Your job contains 1 sequence.
>psy14505
MNQFAKEVISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWN
RPFVKCARVVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAM
RYTECRLNKISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMAT
NIPPHNLTEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRV
IIRAKTHIEEFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSG
MRIVIELKRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKE
VIKRRTIFELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDV
SKIIGFNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYE
NVIKKVIDLTDILSNSKRIIEIITDELNIIKNKYGSHKKNIRRSEIILNAINPSTEDLIA
SQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSN
YGRLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTS
LGIVKKTLLSNFSNPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSV
RAMGRSARGVIGMRLEKKQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKG
IISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILITVENK
SKLCGVQRLCKITMIKKYIPVITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLS
AINNNIQLDNELELVILIKKLNYNFLGKEVYLNGVNVTTLIRNEKVSNNASKIAKFKNIR
KELFKIQVKFRKFPGLVADGRDMGTTVFPDAFLKIFLTADIKQRTKRRYKQLMQKGFSVS
MSDLLINLIKRDIRDKTRNLSPLKCPEQAHLLNTSKMNINQVVNQILDCFATLFKESLLR
HDMRSGEVISAEVIGLDRNFVIINADLKSEAFIPIEEFKNDNGELEVKIGDFVSVAIESL
ENGFGDTILSRDKAKRLASWLSLEKAMESGEIITGTINGKVKGGLTVLTNGLKAFLPGSL
VDIRPVKDTTPFEGKTMDFKVIKLDRKRNNVVLSHRAVIEESMGEERQKLIETLKEGCTV
KGVVKNITDYGAFIDLGGIDGLLHITDIAWRRVKHPSEILTIGQDISTKILKYDQEKNRV
SLGMKQLGIDPWIGLSFRYPRGTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEMDWINKN
VTPSKIVQLNDTVEIMILEINEERRRISLGMKQCKDNPWENFSIIHKKGEKIKGIIKSIT
DFGIFIGLDGNIDGLIHLSDLSWTDPGEEIIRNFKKGDEIEAIILSIDVEKERISLGIKQ
LEGDPFNNYVNINDKGSLVNGIIKSIDTNKGAIIQLSNEVEGYLRISEEDNKHEKKLKIG
ENIDVLTVLIDHKTRYIQLSFKKKEVIKKKKLLTSINANTISGTTNLGLILKAELEKIK
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy14505
(1619 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|P0AES4 - symbol:gyrA species:83333 "Escherichia... 2298 2.3e-238 1
TIGR_CMR|SO_2411 - symbol:SO_2411 "DNA gyrase, A subunit"... 2294 6.0e-238 1
UNIPROTKB|A6V2Q7 - symbol:gyrA "DNA gyrase subunit A" spe... 1811 6.3e-236 2
TIGR_CMR|CBU_0524 - symbol:CBU_0524 "DNA gyrase, A subuni... 2238 1.7e-233 2
UNIPROTKB|Q9KSJ8 - symbol:gyrA "DNA gyrase subunit A" spe... 2221 3.3e-230 1
TIGR_CMR|VC_1258 - symbol:VC_1258 "DNA gyrase, subunit A"... 2221 3.3e-230 1
UNIPROTKB|Q8A9B6 - symbol:gyrA "DNA gyrase subunit A" spe... 1255 2.7e-204 2
UNIPROTKB|Q74H88 - symbol:gyrA "DNA gyrase subunit A" spe... 1875 1.5e-193 1
TIGR_CMR|GSU_0004 - symbol:GSU_0004 "DNA gyrase, A subuni... 1875 1.5e-193 1
UNIPROTKB|A9WK19 - symbol:gyrA "DNA gyrase subunit A" spe... 1221 3.4e-193 2
TIGR_CMR|DET_1630 - symbol:DET_1630 "DNA gyrase, A subuni... 1226 5.1e-188 2
TIGR_CMR|SPO_2051 - symbol:SPO_2051 "DNA gyrase, A subuni... 1723 1.7e-187 2
UNIPROTKB|Q7NC97 - symbol:gyrA "DNA gyrase subunit A" spe... 1226 1.6e-182 2
UNIPROTKB|P35885 - symbol:gyrA "DNA gyrase subunit A" spe... 1124 5.2e-181 2
UNIPROTKB|Q07702 - symbol:gyrA "DNA gyrase subunit A" spe... 1111 2.1e-179 2
UNIPROTKB|Q89L52 - symbol:gyrA "DNA gyrase subunit A" spe... 1716 1.1e-176 1
UNIPROTKB|Q9RT53 - symbol:gyrA "DNA gyrase subunit A" spe... 1055 1.9e-172 2
TIGR_CMR|NSE_0958 - symbol:NSE_0958 "DNA gyrase, A subuni... 1670 8.0e-172 1
UNIPROTKB|P0AG67 - symbol:rpsA "30S ribosomal subunit pro... 1638 2.0e-168 1
TIGR_CMR|ECH_0858 - symbol:ECH_0858 "DNA gyrase, A subuni... 1620 1.6e-166 1
UNIPROTKB|Q9KQT3 - symbol:VC_1915 "30S ribosomal protein ... 1606 4.8e-165 1
TIGR_CMR|VC_1915 - symbol:VC_1915 "ribosomal protein S1" ... 1606 4.8e-165 1
TIGR_CMR|SO_2402 - symbol:SO_2402 "ribosomal protein S1" ... 1569 4.0e-161 1
TIGR_CMR|CPS_2335 - symbol:CPS_2335 "ribosomal protein S1... 1568 5.1e-161 1
TIGR_CMR|APH_0899 - symbol:APH_0899 "DNA gyrase, A subuni... 1544 1.8e-158 1
TIGR_CMR|CJE_1171 - symbol:CJE_1171 "DNA gyrase, A subuni... 1292 1.9e-155 2
UNIPROTKB|Q7NIY2 - symbol:gyrA "DNA gyrase subunit A" spe... 1133 8.6e-155 2
TIGR_CMR|CBU_0528 - symbol:CBU_0528 "ribosomal protein S1... 1463 6.9e-150 1
TIGR_CMR|CHY_2704 - symbol:CHY_2704 "DNA gyrase, A subuni... 1386 9.9e-142 1
TIGR_CMR|BA_3656 - symbol:BA_3656 "DNA topoisomerase IV, ... 1024 4.9e-137 2
UNIPROTKB|Q8CM44 - symbol:gyrA "DNA gyrase subunit A" spe... 1335 2.5e-136 1
TIGR_CMR|BA_0006 - symbol:BA_0006 "DNA gyrase, A subunit"... 1329 1.1e-135 1
UNIPROTKB|P05653 - symbol:gyrA "DNA gyrase subunit A" spe... 1316 2.6e-134 1
TAIR|locus:2075765 - symbol:GYRA "DNA GYRASE A" species:3... 1225 9.7e-133 2
UNIPROTKB|O67108 - symbol:gyrA "DNA gyrase subunit A" spe... 1115 9.6e-129 2
UNIPROTKB|Q3KMH3 - symbol:gyrA_1 "DNA gyrase subunit A" s... 1135 3.6e-127 2
UNIPROTKB|O50510 - symbol:O50510 "DNA gyrase-like protein... 1060 6.3e-125 2
TIGR_CMR|SPO_0802 - symbol:SPO_0802 "ribosomal protein S1... 1194 2.2e-121 1
UNIPROTKB|Q45066 - symbol:parC "DNA topoisomerase 4 subun... 1159 1.1e-117 1
TIGR_CMR|GSU_2603 - symbol:GSU_2603 "ribosomal protein S1... 1140 1.2e-115 1
TIGR_CMR|SPO_0726 - symbol:SPO_0726 "DNA topoisomerase IV... 982 1.6e-99 2
UNIPROTKB|Q89K54 - symbol:gyrA "Topoisomerase II" species... 880 1.3e-96 2
TIGR_CMR|CBU_1866 - symbol:CBU_1866 "DNA topoisomerase IV... 827 2.8e-93 3
TIGR_CMR|ECH_0402 - symbol:ECH_0402 "putative ribosomal p... 912 1.7e-90 1
TIGR_CMR|APH_0273 - symbol:APH_0273 "ribosomal protein S1... 910 2.8e-90 1
UNIPROTKB|P0AFI2 - symbol:parC species:83333 "Escherichia... 827 7.1e-89 2
UNIPROTKB|A6VD77 - symbol:parC "DNA topoisomerase IV, A s... 804 1.7e-86 2
UNIPROTKB|Q9KPE0 - symbol:VC_2430 "Topoisomerase IV, subu... 808 1.9e-83 2
TIGR_CMR|VC_2430 - symbol:VC_2430 "topoisomerase IV, subu... 808 1.9e-83 2
TIGR_CMR|SO_3897 - symbol:SO_3897 "DNA topoisomerase IV, ... 778 3.6e-83 2
TIGR_CMR|NSE_0408 - symbol:NSE_0408 "ribosomal protein S1... 780 2.6e-76 1
UNIPROTKB|A8ISW5 - symbol:CHLREDRAFT_115934 "Predicted pr... 746 1.1e-72 1
TIGR_CMR|CJE_0972 - symbol:CJE_0972 "ribosomal protein S1... 702 5.7e-68 1
UNIPROTKB|O06147 - symbol:rpsA "30S ribosomal protein S1"... 684 7.5e-67 2
TIGR_CMR|BA_1519 - symbol:BA_1519 "ribosomal protein S1" ... 597 9.3e-57 1
GENEDB_PFALCIPARUM|PFL1120c - symbol:PFL1120c "DNA GyrAse... 619 1.1e-56 4
UNIPROTKB|Q8I0X3 - symbol:GyrA "DNA gyrase subunit A;evid... 619 1.1e-56 4
TIGR_CMR|GSU_1200 - symbol:GSU_1200 "ribosomal protein S1... 558 1.3e-52 1
TIGR_CMR|SO_2403 - symbol:SO_2403 "cytidylate kinase" spe... 492 1.5e-45 1
TIGR_CMR|CPS_2334 - symbol:CPS_2334 "cytidylate kinase" s... 461 3.0e-42 1
UNIPROTKB|P0A6I0 - symbol:cmk "(d)CMP kinase" species:833... 447 1.8e-41 2
TIGR_CMR|CHY_1925 - symbol:CHY_1925 "hydroxymethylbutenyl... 456 1.2e-40 2
UNIPROTKB|Q3KL34 - symbol:gyrA_2 "DNA gyrase subunit A" s... 369 8.4e-40 2
UNIPROTKB|Q9KQT2 - symbol:cmk "Cytidylate kinase" species... 436 1.4e-39 1
TIGR_CMR|VC_1916 - symbol:VC_1916 "cytidylate kinase" spe... 436 1.4e-39 1
TIGR_CMR|CHY_1927 - symbol:CHY_1927 "cytidylate kinase" s... 423 3.3e-38 1
TIGR_CMR|BA_1518 - symbol:BA_1518 "cytidylate kinase" spe... 413 3.9e-37 1
TIGR_CMR|CBU_0527 - symbol:CBU_0527 "cytidylate kinase" s... 411 6.3e-37 1
UNIPROTKB|Q8A1S9 - symbol:BT_3579 "Topoisomerase IV subun... 424 4.9e-36 4
TIGR_CMR|GSU_2605 - symbol:GSU_2605 "cytidylate kinase" s... 339 3.0e-29 1
TIGR_CMR|ECH_0403 - symbol:ECH_0403 "cytidylate kinase" s... 334 1.0e-28 1
UNIPROTKB|P63803 - symbol:cmk "Cytidylate kinase" species... 320 3.1e-27 1
UNIPROTKB|Q8EYM0 - symbol:gyrA "DNA gyrase subunit A" spe... 308 9.4e-25 2
TIGR_CMR|APH_0274 - symbol:APH_0274 "cytidylate monophosp... 283 2.7e-23 1
TIGR_CMR|SPO_A0017 - symbol:SPO_A0017 "cytidylate kinase"... 273 3.1e-22 1
TAIR|locus:2145860 - symbol:RPS1 "ribosomal protein S1" s... 278 3.6e-21 1
ASPGD|ASPL0000029372 - symbol:top2 species:162425 "Emeric... 232 3.9e-17 2
UNIPROTKB|Q5B224 - symbol:AN5406.2 "DNA topoisomerase 2" ... 232 3.9e-17 2
UNIPROTKB|Q7S9W8 - symbol:NCU06338 "DNA topoisomerase 2" ... 272 8.9e-17 2
ZFIN|ZDB-GENE-030131-2453 - symbol:top2a "topoisomerase (... 236 3.4e-15 1
DICTYBASE|DDB_G0279737 - symbol:top2mt "DNA topoisomerase... 231 3.7e-15 2
UNIPROTKB|P41515 - symbol:TOP2A "DNA topoisomerase 2-alph... 215 4.5e-15 3
WB|WBGene00019884 - symbol:R05D3.12 species:6239 "Caenorh... 229 1.3e-14 1
UNIPROTKB|P34534 - symbol:R05D3.12 "Putative DNA topoisom... 229 1.3e-14 1
UNIPROTKB|F1P2F2 - symbol:TOP2A "DNA topoisomerase 2" spe... 230 1.5e-14 1
MGI|MGI:98790 - symbol:Top2a "topoisomerase (DNA) II alph... 213 4.8e-14 3
UNIPROTKB|Q755V8 - symbol:AER410W "DNA topoisomerase 2" s... 217 5.6e-14 2
RGD|62048 - symbol:Top2a "topoisomerase (DNA) II alpha" s... 213 1.8e-13 2
UNIPROTKB|Q7RJ69 - symbol:PY03394 "DNA topoisomerase 2" s... 206 2.1e-13 4
UNIPROTKB|E9PTY5 - symbol:Top2a "DNA topoisomerase 2" spe... 213 9.9e-13 3
ZFIN|ZDB-GENE-041008-136 - symbol:top2b "topoisomerase (D... 213 1.0e-12 1
UNIPROTKB|F1M7A0 - symbol:Top2a "DNA topoisomerase 2" spe... 213 2.0e-12 3
UNIPROTKB|F1NR58 - symbol:TOP2B "DNA topoisomerase 2" spe... 204 2.3e-12 2
UNIPROTKB|O42131 - symbol:TOP2B "DNA topoisomerase 2-beta... 204 2.3e-12 2
UNIPROTKB|E1BZ19 - symbol:TOP2B "DNA topoisomerase 2" spe... 204 2.3e-12 2
UNIPROTKB|Q0DYE1 - symbol:Os02g0699700 "DNA topoisomerase... 206 2.9e-12 1
POMBASE|SPBC1A4.03c - symbol:top2 "DNA topoisomerase II" ... 205 3.8e-12 2
UNIPROTKB|E9PCY5 - symbol:TOP2B "DNA topoisomerase 2" spe... 199 4.2e-12 2
UNIPROTKB|F1Q2M4 - symbol:TOP2A "DNA topoisomerase 2" spe... 224 4.8e-12 2
UNIPROTKB|A8JD08 - symbol:TOP2 "DNA topoisomerase 2" spec... 205 4.8e-12 1
WARNING: Descriptions of 83 database sequences were not reported due to the
limiting value of parameter V = 100.
>UNIPROTKB|P0AES4 [details] [associations]
symbol:gyrA species:83333 "Escherichia coli K-12"
[GO:0042493 "response to drug" evidence=IMP] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA;IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IMP;IDA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IDA] [GO:0006265 "DNA topological change"
evidence=IEA;IMP] [GO:0005737 "cytoplasm" evidence=IEA;IDA]
[GO:0006259 "DNA metabolic process" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0009295 "nucleoid" evidence=IBA]
[GO:0042802 "identical protein binding" evidence=IPI] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016020 "membrane" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0046677
"response to antibiotic" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] HAMAP:MF_01897 InterPro:IPR002205 InterPro:IPR005743
InterPro:IPR006691 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989 SMART:SM00434
GO:GO:0005524 GO:GO:0005737 GO:GO:0005694 GO:GO:0007059
GO:GO:0016020 GO:GO:0042493 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0046677
GO:GO:0006351 Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0009295
GO:GO:0006265 eggNOG:COG0188 HOGENOM:HOG000076278 KO:K02469
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 OMA:IAQEDVV
TIGRFAMs:TIGR01063 ProtClustDB:PRK05560 EMBL:X06373 EMBL:X06744
EMBL:M15631 EMBL:Y00544 PIR:S02340 RefSeq:NP_416734.1
RefSeq:YP_490470.1 PDB:1AB4 PDB:1X75 PDB:1ZI0 PDB:2Y3P PDB:3NUH
PDB:4ELY PDBsum:1AB4 PDBsum:1X75 PDBsum:1ZI0 PDBsum:2Y3P
PDBsum:3NUH PDBsum:4ELY ProteinModelPortal:P0AES4 SMR:P0AES4
DIP:DIP-36179N IntAct:P0AES4 MINT:MINT-201682 SWISS-2DPAGE:P0AES4
PaxDb:P0AES4 PRIDE:P0AES4 EnsemblBacteria:EBESCT00000004656
EnsemblBacteria:EBESCT00000017137 GeneID:12933138 GeneID:946614
KEGG:ecj:Y75_p2193 KEGG:eco:b2231 PATRIC:32119821 EchoBASE:EB0418
EcoGene:EG10423 BioCyc:EcoCyc:EG10423-MONOMER
BioCyc:ECOL316407:JW2225-MONOMER BioCyc:MetaCyc:EG10423-MONOMER
BindingDB:P0AES4 ChEMBL:CHEMBL1858 EvolutionaryTrace:P0AES4
Genevestigator:P0AES4 Gene3D:1.10.268.10 Uniprot:P0AES4
Length = 875
Score = 2298 (814.0 bits), Expect = 2.3e-238, P = 2.3e-238
Identities = 458/876 (52%), Positives = 631/876 (72%)
Query: 1 MNQFAKEVISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWN 60
M+ A+E+ + +EEE+ SYLDYAMSVIVGRALPDVRDGLKPVHRRVL+AM+ + N WN
Sbjct: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60
Query: 61 RPFVKCARVVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAM 120
+ + K ARVVG+ +GKYHPHGD ++YD +VRMAQ FSLR LVDGQGNFGSIDGDSAAAM
Sbjct: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120
Query: 121 RYTECRLNKISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMAT 180
RYTE RL KI++EL+ DL+KET+DF+ NYDG EK P V+PT+IPNLL+NGSSGIAVGMAT
Sbjct: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180
Query: 181 NIPPHNLTEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRV 240
NIPPHNLTEVI+G L + + + SI L++ IP PDFPTA II G + + Y TG+G+V
Sbjct: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240
Query: 241 IIRAKTHIEEFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSG 300
IRA+ +E + R II+ E+PYQVNK L+EKI++LVKEK++E IS LRDESDK G
Sbjct: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300
Query: 301 MRIVIELKRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKE 360
MRIVIE+KR+ + E+VLN LY QTQLQ +FG+NM+AL +GQPK++NLK+I+ F+ HR+E
Sbjct: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360
Query: 361 VIKRRTIFELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDV 420
V+ RRTIFELRKAR+ AHILE L +AL NID I++IR TP EAK ++ + W L +V
Sbjct: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420
Query: 421 SKIIGFNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYE 480
+ ++ + + +++ +Y L++ QAQ IL + LQ+LT +E +K++++Y+
Sbjct: 421 AAMLERAGDDAARPEWLEPEFGVRDG-LYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYK 479
Query: 481 NVIKKVIDLTDILSNSKRXXXXXXXXXXXXKNKYGSHKKNIRRSEIILNAINPSTEDLIA 540
++ ++ +L IL ++ R + ++G RR+EI N+ + + EDLI
Sbjct: 480 ELLDQIAELLRILGSADRLMEVIREELELVREQFGDK----RRTEITANSADINLEDLIT 535
Query: 541 SQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSN 600
+D+V+TLS+ GY+K QP+SEY AQ+RGG+GK A K+ED+I++L +ANTHD+ILCFS+
Sbjct: 536 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSS 595
Query: 601 YGRLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTS 660
GR+Y +KV+Q+P+ +R +RG+PI+N+ L+ E+IT ILP++ +F + VFM+T+
Sbjct: 596 RGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVT----EFEEGVKVFMATA 651
Query: 661 LGIVKKTLLSNFSNPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSV 720
G VKKT+L+ F+ R +G +A+ L + D LIG LT G ++MLFS GK VRF E+SV
Sbjct: 652 NGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSV 711
Query: 721 RAMGRSARGVIGMRLEKKQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKG 780
RAMG + GV G+RL + KV++L+V ++LTAT+NGYGKRT + EY +R TKG
Sbjct: 712 RAMGCNTTGVRGIRLGEGDKVVSLIVPRGDG-AILTATQNGYGKRTAVAEYPTKSRATKG 770
Query: 781 IISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILITVENK 840
+ISIK +RNG VV A V+ +IM+IT G L+RTRVSEI +GR+TQGVILI
Sbjct: 771 VISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAED 830
Query: 841 SKLCGVQRLCKITMIKKYIPVITIDGPTASGKGTVA 876
+ G+QR+ + + ++ + TIDG A G +A
Sbjct: 831 ENVVGLQRVAE-PVDEEDLD--TIDGSAAEGDDEIA 863
>TIGR_CMR|SO_2411 [details] [associations]
symbol:SO_2411 "DNA gyrase, A subunit" species:211586
"Shewanella oneidensis MR-1" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01897 InterPro:IPR002205
InterPro:IPR005743 InterPro:IPR006691 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989
SMART:SM00434 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0006261 EMBL:AE014299 GenomeReviews:AE014299_GR
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265
HOGENOM:HOG000076278 KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 OMA:IAQEDVV TIGRFAMs:TIGR01063 ProtClustDB:PRK05560
Gene3D:1.10.268.10 HSSP:P09097 RefSeq:NP_718001.1
ProteinModelPortal:Q8EEH1 SMR:Q8EEH1 GeneID:1170127
KEGG:son:SO_2411 PATRIC:23524439 Uniprot:Q8EEH1
Length = 919
Score = 2294 (812.6 bits), Expect = 6.0e-238, P = 6.0e-238
Identities = 471/880 (53%), Positives = 621/880 (70%)
Query: 1 MNQFAKEVISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWN 60
M A + I +E+E+ SYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAM E+ N WN
Sbjct: 1 MTDLASSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWN 60
Query: 61 RPFVKCARVVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAM 120
+P+ K ARVVG+ +GKYHPHGD ++YD +VRMAQ FSLR TLVDGQGNFGS+DGDSAAAM
Sbjct: 61 KPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAM 120
Query: 121 RYTECRLNKISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMAT 180
RYTE R++K++++LL DL+KET+D++ NYDG E+ P+VLPTR+PNLLINGSSGIAVGMAT
Sbjct: 121 RYTEIRMDKLAHQLLADLEKETVDYVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMAT 180
Query: 181 NIPPHNLTEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRV 240
NIPPHNLTEV+ G L ++ +P SI L+ IP PDFPTA II G + D Y TG+GR
Sbjct: 181 NIPPHNLTEVVKGCLALIADPALSIEQLMDYIPGPDFPTAAIINGRKGIIDAYKTGRGRA 240
Query: 241 IIRAKTHIEEFNREN-RTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKS 299
I+RA +E EN R II+ E+PYQVNK L+EKI++LVK+KKLE IS LRDESDK
Sbjct: 241 IMRALAEVE--TEENGRERIIVTEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKD 298
Query: 300 GMRIVIELKRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRK 359
GMRIVIE+KR E+ E+VLN LY QTQ+Q +FG+NM+AL NGQPKL NLKE+L FILHR+
Sbjct: 299 GMRIVIEIKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRR 358
Query: 360 EVIKRRTIFELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPD 419
EV+ RRT+FELRKARE AHILE L +AL NID I +I+++ TP +AK K++E W L
Sbjct: 359 EVVTRRTVFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWALGH 418
Query: 420 VSKIIGFNKKNYNTISKINNISKLQN--NDMYKLSDIQAQEILKMPLQRLTNMEQKKIIN 477
V G +K + ++ + + +Y L++ QAQ IL++ L RLT +E KII
Sbjct: 419 VQ---GMLEKAGDDAARPEWLEPEYGIRDGLYYLTEQQAQAILELRLHRLTGLEHDKIIA 475
Query: 478 KYENVIKKVIDLTDILSNSKRXXXXXXXXXXXXKNKYGSHKKNIRRSEIILNAINPSTED 537
+YE +++ + L IL + +R +YG + RR+ I N I+ S ED
Sbjct: 476 EYEELLEFIAGLLFILRSPERLMEVIKEELEEILAEYG----DARRTVINANEIDMSLED 531
Query: 538 LIASQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILC 597
LI +D+V+TLS+LGY K QP+S+Y+AQ+RGG+GK A KDED++ +L +ANTHD ILC
Sbjct: 532 LINEEDVVVTLSHLGYAKYQPLSDYQAQRRGGKGKVATKVKDEDFVEKLLVANTHDTILC 591
Query: 598 FSNYGRLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFM 657
FS++G++YWLKV+Q+P SR SRG+PI+N+ L + E+IT ILP+ R++ ++ Y+ M
Sbjct: 592 FSDFGKMYWLKVYQLPLASRTSRGRPIVNLLPLADGERITAILPV----REYAEDKYIIM 647
Query: 658 STSLGIVKKTLLSNFSNPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNE 717
+TS G VKKT L+ +SNPR +GIIAVNL + D LIG +T+G +IMLFS+ GK VRF E
Sbjct: 648 ATSNGTVKKTALTAYSNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFKE 707
Query: 718 NS-------------------------VRAMGRSARGVIGMRLEKKQKVIALLVSNNQKQ 752
VR MGR A GV G++LE+ Q+V++L+V +
Sbjct: 708 GEEVAVLDENGNPVLDEEGNPQINFKGVRPMGRGATGVRGIKLEEGQRVVSLIVPKDDG- 766
Query: 753 SVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLVNRYHEIMLITTGG 812
++LT TENGYGKRT + EY +R TKG++SIK ++RNG VV A V EIMLI+ G
Sbjct: 767 AILTVTENGYGKRTELSEYPSKSRATKGVVSIKVSERNGAVVGAVQVGGNDEIMLISDKG 826
Query: 813 ILIRTRVSEIRKMGRSTQGVILITVENKSKLCGVQRLCKI 852
L+RT + + +GR+TQGV +I + K+ G+QR+ +I
Sbjct: 827 TLVRTPANGVSIIGRNTQGVTIIRTASDEKVVGLQRIDEI 866
>UNIPROTKB|A6V2Q7 [details] [associations]
symbol:gyrA "DNA gyrase subunit A" species:381754
"Pseudomonas aeruginosa PA7" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01897 InterPro:IPR002205 InterPro:IPR005743
InterPro:IPR006691 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989 SMART:SM00434
GO:GO:0005524 GO:GO:0005737 GO:GO:0005694 GO:GO:0007059
GO:GO:0006261 EMBL:CP000744 GenomeReviews:CP000744_GR
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0009295 GO:GO:0006265
eggNOG:COG0188 HOGENOM:HOG000076278 KO:K02469 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 OMA:IAQEDVV TIGRFAMs:TIGR01063
ProtClustDB:PRK05560 Gene3D:1.10.268.10 RefSeq:YP_001347342.1
ProteinModelPortal:A6V2Q7 SMR:A6V2Q7 STRING:A6V2Q7 GeneID:5355666
KEGG:pap:PSPA7_1961 PATRIC:19825727
BioCyc:PAER381754:GHMY-2022-MONOMER Uniprot:A6V2Q7
Length = 921
Score = 1811 (642.6 bits), Expect = 6.3e-236, Sum P(2) = 6.3e-236
Identities = 342/643 (53%), Positives = 481/643 (74%)
Query: 1 MNQFAKEVISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWN 60
M + AKE++ + +E+E+ +SYLDYAMSVIVGRALPD RDGLKPVHRRVL+AM E+ N WN
Sbjct: 1 MGELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWN 60
Query: 61 RPFVKCARVVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAM 120
+P+ K ARVVG+ +GKYHPHGD+++YD +VRMAQ FSLR LVDGQGNFGS+DGD+AAAM
Sbjct: 61 KPYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAM 120
Query: 121 RYTECRLNKISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMAT 180
RYTE R+ K+++ELL DL+KET+D++ NYDG E+ P+V+PT+IPNLL+NGSSGIAVGMAT
Sbjct: 121 RYTEVRMAKLAHELLADLEKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMAT 180
Query: 181 NIPPHNLTEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRV 240
NIPPHNL EVIDG L ++ NP+ ++++L++ IP PDFPTAGII G + + + Y TG+GR+
Sbjct: 181 NIPPHNLGEVIDGCLALMDNPDLTVDELMQYIPGPDFPTAGIINGRAGIIEAYRTGRGRI 240
Query: 241 IIRAKTHIEEFNREN-RTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKS 299
IRA+ +EE + R III ELPYQ+NK L+EKI++LVKEKK+E IS LRDESDK
Sbjct: 241 YIRARAVVEEMEKGGGREQIIITELPYQLNKARLIEKIAELVKEKKIEGISELRDESDKD 300
Query: 300 GMRIVIELKRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRK 359
GMR+VIEL+R E+ E+VLN LY QTQLQ+ FG+N++ALV+GQP+ LNLK++L F+ HR+
Sbjct: 301 GMRVVIELRRGEVGEVVLNNLYAQTQLQSVFGINVVALVDGQPRTLNLKDMLEVFVRHRR 360
Query: 360 EVIKRRTIFELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPD 419
EV+ RRT++ELRKARE HILEG +AL+NID I++I+S+ TP EAK ++I + W
Sbjct: 361 EVVTRRTVYELRKARERGHILEGQAVALSNIDPVIELIKSSPTPAEAKERLIATAWESSA 420
Query: 420 VSKIIGFNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKY 479
V ++ + ++ L++ Y LS QAQ IL++ L RLT +E +K++++Y
Sbjct: 421 VEAMVERAGADACRPEDLDPQYGLRDGKYY-LSPEQAQAILELRLHRLTGLEHEKLLSEY 479
Query: 480 ENVIKKVIDLTDILSNSKRXXXXXXXXXXXXKNKYGSHKKNIRRSEIILNAINPSTEDLI 539
+ ++ + +L IL+N R K ++G + RR+EI+ + ++ + DLI
Sbjct: 480 QEILNLIGELIRILTNPARLMEVIREELEAVKAEFG----DARRTEIVASQVDLTIADLI 535
Query: 540 ASQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFS 599
+D V+T+S+ GY KSQP++ Y+AQ+RGG+GK A KDED+I L +AN+H +L FS
Sbjct: 536 TEEDRVVTISHGGYAKSQPLAAYQAQRRGGKGKSATGMKDEDYIEHLLVANSHATLLLFS 595
Query: 600 NYGRLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPL 642
+ G++YWL+ ++IP+ SR +RG+P++N+ L E+IT +L +
Sbjct: 596 SKGKVYWLRTFEIPEASRTARGRPLVNLLPLDEGERITAMLQI 638
Score = 487 (176.5 bits), Expect = 6.3e-236, Sum P(2) = 6.3e-236
Identities = 98/200 (49%), Positives = 140/200 (70%)
Query: 650 PKNNYVFMSTSLGIVKKTLLSNFSNPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDS 709
P Y+FM+T+ G VKKT L FS PR SG+IA+ L D LI AA+TDG+ ++MLFS +
Sbjct: 685 PTGAYIFMATAFGTVKKTPLVQFSRPRSSGLIALKLEEGDTLIAAAITDGAKEVMLFSSA 744
Query: 710 GKAVRFNENSVRAMGRSARGVIGMRLEKKQKVIALLVSNNQKQSVLTATENGYGKRTLIK 769
GK +RF E+ VR MGR+ARGV GMRL K Q++I++L+ + Q +LTA+E G+GKRT +
Sbjct: 745 GKVIRFAESVVRIMGRNARGVRGMRLGKGQQLISMLIPESGAQ-ILTASERGFGKRTPLS 803
Query: 770 EYTKHNRGTKGIISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVSEIRKMGRST 829
++ + RG +G+I++ TN+RNG ++AA V EIMLI+ G L+RTRV E+ R+T
Sbjct: 804 KFPRRGRGGQGVIAMVTNERNGALIAAVQVQEGEEIMLISDQGTLVRTRVDEVSLSSRNT 863
Query: 830 QGVILITVENKSKLCGVQRL 849
QGV LI + + L G++R+
Sbjct: 864 QGVTLIKLASDEVLVGLERV 883
>TIGR_CMR|CBU_0524 [details] [associations]
symbol:CBU_0524 "DNA gyrase, A subunit" species:227377
"Coxiella burnetii RSA 493" [GO:0006265 "DNA topological change"
evidence=ISS] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01897 InterPro:IPR002205
InterPro:IPR005743 InterPro:IPR006691 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989
SMART:SM00434 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0006261 EMBL:AE016828 GenomeReviews:AE016828_GR
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265
HOGENOM:HOG000076278 KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 OMA:IAQEDVV TIGRFAMs:TIGR01063 ProtClustDB:PRK05560
Gene3D:1.10.268.10 RefSeq:NP_819556.2 PRIDE:Q83E13 GeneID:1208409
KEGG:cbu:CBU_0524 PATRIC:17929749
BioCyc:CBUR227377:GJ7S-527-MONOMER Uniprot:Q83E13
Length = 850
Score = 2238 (792.9 bits), Expect = 1.7e-233, Sum P(2) = 1.7e-233
Identities = 448/852 (52%), Positives = 605/852 (71%)
Query: 1 MNQFAKEVISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWN 60
M + A E+I I +EEE+ +SYLDYAMSVIVGRALPDVRDGLKPVHRRVL+AM E+ N WN
Sbjct: 3 MAEAAHEIIPITIEEELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWN 62
Query: 61 RPFVKCARVVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAM 120
+P K AR+VG+ +GKYHPHGDV++YD +VRMAQ FSLR L+DGQGNFGS+DGD+ AAM
Sbjct: 63 KPNKKSARIVGDVIGKYHPHGDVAVYDTIVRMAQPFSLRYLLIDGQGNFGSVDGDAPAAM 122
Query: 121 RYTECRLNKISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMAT 180
RYTE RL++ ++ L+ DLDKET+DF NYD E P+VLPTR+PNLLING+SGIAVGMAT
Sbjct: 123 RYTEIRLSRFAHALMADLDKETVDFAPNYDETEMAPAVLPTRVPNLLINGASGIAVGMAT 182
Query: 181 NIPPHNLTEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRV 240
NIPPHNL E+I+ L ++ NP+ ++ +L++ IP PDFPTAGII G + + Y TG+GR+
Sbjct: 183 NIPPHNLNEIINATLALIENPDLNVEELMRHIPGPDFPTAGIINGRNGIVQAYKTGRGRI 242
Query: 241 IIRAKTHIEEFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSG 300
+RAKT IE + R+ I++ ELPYQVNK LLEKI +LV+EK++E IS LRDESDK G
Sbjct: 243 YVRAKTEIET-TKSGRSLIVVHELPYQVNKARLLEKIGELVREKRIEGISGLRDESDKRG 301
Query: 301 MRIVIELKRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKE 360
MR+VIE+ R + EIVLN LY QTQLQ FG+NM+AL NGQP++LNLK++L F+ HR+E
Sbjct: 302 MRMVIEVSRGDNAEIVLNNLYAQTQLQTVFGINMVALDNGQPRVLNLKQLLSAFLQHRRE 361
Query: 361 VIKRRTIFELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWN---L 417
V+ RRT+FELRKARE AHILEGL +AL NID I +I+ TP AK ++ W +
Sbjct: 362 VVTRRTLFELRKARERAHILEGLGVALANIDEVIALIKKAKTPAIAKENLLAQAWKPGAV 421
Query: 418 PDVSKIIGFNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIIN 477
D K G ++ + ++ + K + Y LS QAQ IL + L RLT +E KI
Sbjct: 422 ADFLKKAGSDRTRPDDLAAEFGLRK----EGYYLSPAQAQAILDLRLHRLTGLETDKIRE 477
Query: 478 KYENVIKKVIDLTDILSNSKRXXXXXXXXXXXXKNKYGSHKKNIRRSEIILNAINPSTED 537
+Y +I K+ +L I+S+ + K ++G RR+ II + + + ED
Sbjct: 478 EYIAIIDKIEELIAIVSDPDKLHEVIREELIAVKEQFGDE----RRTVIIDDHSDLTHED 533
Query: 538 LIASQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILC 597
LI + V+TLS+ GYIKSQ +S Y+AQ RGGRGK A K++D++ + +AN+HD ILC
Sbjct: 534 LIPEEHRVVTLSHEGYIKSQSLSSYQAQHRGGRGKLAAAVKEQDFVKNILVANSHDTILC 593
Query: 598 FSNYGRLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFM 657
FS G++YWLKV+Q+PQGSR +RG+PIIN+ L E+I+ ILP+ R + +++VFM
Sbjct: 594 FSTQGKVYWLKVYQVPQGSRIARGRPIINLLPLVKDEQISAILPI----RAYDGSHFVFM 649
Query: 658 STSLGIVKKTLLSNFSNPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNE 717
+T+ G +KK L+ FS PR G IA+ L+ D L+G +TDG +IML +D+GKA+RF+E
Sbjct: 650 ATAQGAIKKVSLAEFSQPRTKGKIALALNEGDRLVGVDITDGKKEIMLVTDAGKAIRFHE 709
Query: 718 NSVRAMGRSARGVIGMRLEKKQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRG 777
VR MGRSARGV G++L+ KQ VIAL+V K ++LTAT +GYG+RT + +Y RG
Sbjct: 710 KEVREMGRSARGVRGIKLKAKQNVIALIVVK-PKGNILTATVHGYGQRTALDDYRSTGRG 768
Query: 778 TKGIISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILITV 837
+G+++I+ N RNGKVV+A V +++LI+ G L+RTRV+EI +MGR+TQGV LI +
Sbjct: 769 GQGVMAIRINSRNGKVVSAAQVFDDDDVLLISDKGTLVRTRVNEISQMGRNTQGVRLIQL 828
Query: 838 ENKSKLCGVQRL 849
L G++ +
Sbjct: 829 SQDELLVGMEAI 840
Score = 37 (18.1 bits), Expect = 1.7e-233, Sum P(2) = 1.7e-233
Identities = 8/26 (30%), Positives = 18/26 (69%)
Query: 1079 LRHDMRSGEVISAEVIGLDRNFVIIN 1104
+R + R+G+V+SA + D + ++I+
Sbjct: 775 IRINSRNGKVVSAAQVFDDDDVLLIS 800
>UNIPROTKB|Q9KSJ8 [details] [associations]
symbol:gyrA "DNA gyrase subunit A" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0003916 "DNA
topoisomerase activity" evidence=ISS] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=ISS]
HAMAP:MF_01897 InterPro:IPR002205 InterPro:IPR005743
InterPro:IPR006691 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989 SMART:SM00434
GO:GO:0005524 GO:GO:0005737 GO:GO:0005694 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006261 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0009330 GO:GO:0006265 KO:K02469
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 OMA:IAQEDVV
TIGRFAMs:TIGR01063 ProtClustDB:PRK05560 Gene3D:1.10.268.10
HSSP:P09097 PIR:E82221 RefSeq:NP_230903.1 ProteinModelPortal:Q9KSJ8
SMR:Q9KSJ8 DNASU:2614695 GeneID:2614695 KEGG:vch:VC1258
PATRIC:20081596 Uniprot:Q9KSJ8
Length = 894
Score = 2221 (786.9 bits), Expect = 3.3e-230, P = 3.3e-230
Identities = 457/880 (51%), Positives = 612/880 (69%)
Query: 1 MNQFAKEVISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWN 60
M+ AKE+ + +E+E+ SYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAM+ + N WN
Sbjct: 1 MSDLAKEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWN 60
Query: 61 RPFVKCARVVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAM 120
+ + K ARVVG+ +GKYHPHGD ++YD +VRMAQ FSLR LVDGQGNFGSIDGDSAAAM
Sbjct: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120
Query: 121 RYTECRLNKISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMAT 180
RYTE R++KI++ELL DLDKET+D++ NYDG E+ P+VLPT+IPNLLING+SGIAVGMAT
Sbjct: 121 RYTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMAT 180
Query: 181 NIPPHNLTEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRV 240
NIPPHNL EVIDG L + N +I++L+ IP PDFPTA +I G + D Y TG+G+V
Sbjct: 181 NIPPHNLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKV 240
Query: 241 IIRAKTHIEEFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSG 300
+R+K IE ++ + II+ E+PYQVNK L+EKI++LVKEKK+E IS LRDESDK G
Sbjct: 241 YMRSKAEIET-DKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDG 299
Query: 301 MRIVIELKRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKE 360
MRIVIE KR+ + E+VLN LY TQLQ TFG+NM+AL NGQPKL NLKE+L F+ HR+E
Sbjct: 300 MRIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRRE 359
Query: 361 VIKRRTIFELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDV 420
V+ RRTIFELRKARE AHILEGL +AL NID I++IR +TP EAK +I W+L +V
Sbjct: 360 VVTRRTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNV 419
Query: 421 SKII---GFNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIIN 477
+ ++ G + + I + Y L++ QAQ IL + L +LT +E +KI++
Sbjct: 420 AAMLERAGTDAARPEWLEPQYGI----RDGKYFLTEQQAQAILDLRLHKLTGLEHEKILD 475
Query: 478 KYENVIKKVIDLTDILSNSKRXXXXXXXXXXXXKNKYGSHKKNIRRSEIILNAINPSTED 537
+Y+ +++++ L IL++++R + + + RR+EI + E+
Sbjct: 476 EYKQLLEEIAALMHILASTERLMEVIREELEAIRAGFS----DARRTEITAATHDIDMEE 531
Query: 538 LIASQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILC 597
LIA +D+V+TLS+ GY+K Q +S+Y AQ+RGG+GK A K+ED+I +L +ANTHD IL
Sbjct: 532 LIAREDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILL 591
Query: 598 FSNYGRLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFM 657
FS G+ Y +KV+Q+P SR +RGKPI+N+ L+ E+IT ILP++ +F ++ ++FM
Sbjct: 592 FSTRGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVT----EFSEDKFIFM 647
Query: 658 STSLGIVKKTLLSNFSNPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNE 717
+T G VKKT L F+N R +G+IA+NL +ED LIG +TDG +IMLFS GK VRF E
Sbjct: 648 ATGDGTVKKTSLDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKE 707
Query: 718 NS-------------------------VRAMGRSARGVIGMRLEKKQKVIALLVSNNQKQ 752
+ VR MGR+A GV GM+L +V++L+V +
Sbjct: 708 SEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKTEGD 767
Query: 753 SVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLVNRYHEIMLITTGG 812
VLT TENGYGKRT + EY RGT+G++SIK ++RNG VV A V E M+IT G
Sbjct: 768 -VLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQVAEGDEFMMITNAG 826
Query: 813 ILIRTRVSEIRKMGRSTQGVILITVENKSKLCGVQRLCKI 852
L+RTRV+E+ ++GR+TQGV LI + G+QR+ +I
Sbjct: 827 TLVRTRVAEVSQVGRNTQGVTLIRTSEGESVVGLQRIDEI 866
>TIGR_CMR|VC_1258 [details] [associations]
symbol:VC_1258 "DNA gyrase, subunit A" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003916 "DNA topoisomerase activity"
evidence=ISS] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01897
InterPro:IPR002205 InterPro:IPR005743 InterPro:IPR006691
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 Pfam:PF03989 SMART:SM00434 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006261
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0009330 GO:GO:0006265
KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
OMA:IAQEDVV TIGRFAMs:TIGR01063 ProtClustDB:PRK05560
Gene3D:1.10.268.10 HSSP:P09097 PIR:E82221 RefSeq:NP_230903.1
ProteinModelPortal:Q9KSJ8 SMR:Q9KSJ8 DNASU:2614695 GeneID:2614695
KEGG:vch:VC1258 PATRIC:20081596 Uniprot:Q9KSJ8
Length = 894
Score = 2221 (786.9 bits), Expect = 3.3e-230, P = 3.3e-230
Identities = 457/880 (51%), Positives = 612/880 (69%)
Query: 1 MNQFAKEVISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWN 60
M+ AKE+ + +E+E+ SYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAM+ + N WN
Sbjct: 1 MSDLAKEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWN 60
Query: 61 RPFVKCARVVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAM 120
+ + K ARVVG+ +GKYHPHGD ++YD +VRMAQ FSLR LVDGQGNFGSIDGDSAAAM
Sbjct: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120
Query: 121 RYTECRLNKISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMAT 180
RYTE R++KI++ELL DLDKET+D++ NYDG E+ P+VLPT+IPNLLING+SGIAVGMAT
Sbjct: 121 RYTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMAT 180
Query: 181 NIPPHNLTEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRV 240
NIPPHNL EVIDG L + N +I++L+ IP PDFPTA +I G + D Y TG+G+V
Sbjct: 181 NIPPHNLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKV 240
Query: 241 IIRAKTHIEEFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSG 300
+R+K IE ++ + II+ E+PYQVNK L+EKI++LVKEKK+E IS LRDESDK G
Sbjct: 241 YMRSKAEIET-DKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDG 299
Query: 301 MRIVIELKRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKE 360
MRIVIE KR+ + E+VLN LY TQLQ TFG+NM+AL NGQPKL NLKE+L F+ HR+E
Sbjct: 300 MRIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRRE 359
Query: 361 VIKRRTIFELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDV 420
V+ RRTIFELRKARE AHILEGL +AL NID I++IR +TP EAK +I W+L +V
Sbjct: 360 VVTRRTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNV 419
Query: 421 SKII---GFNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIIN 477
+ ++ G + + I + Y L++ QAQ IL + L +LT +E +KI++
Sbjct: 420 AAMLERAGTDAARPEWLEPQYGI----RDGKYFLTEQQAQAILDLRLHKLTGLEHEKILD 475
Query: 478 KYENVIKKVIDLTDILSNSKRXXXXXXXXXXXXKNKYGSHKKNIRRSEIILNAINPSTED 537
+Y+ +++++ L IL++++R + + + RR+EI + E+
Sbjct: 476 EYKQLLEEIAALMHILASTERLMEVIREELEAIRAGFS----DARRTEITAATHDIDMEE 531
Query: 538 LIASQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILC 597
LIA +D+V+TLS+ GY+K Q +S+Y AQ+RGG+GK A K+ED+I +L +ANTHD IL
Sbjct: 532 LIAREDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILL 591
Query: 598 FSNYGRLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFM 657
FS G+ Y +KV+Q+P SR +RGKPI+N+ L+ E+IT ILP++ +F ++ ++FM
Sbjct: 592 FSTRGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVT----EFSEDKFIFM 647
Query: 658 STSLGIVKKTLLSNFSNPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNE 717
+T G VKKT L F+N R +G+IA+NL +ED LIG +TDG +IMLFS GK VRF E
Sbjct: 648 ATGDGTVKKTSLDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKE 707
Query: 718 NS-------------------------VRAMGRSARGVIGMRLEKKQKVIALLVSNNQKQ 752
+ VR MGR+A GV GM+L +V++L+V +
Sbjct: 708 SEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSLIVPKTEGD 767
Query: 753 SVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLVNRYHEIMLITTGG 812
VLT TENGYGKRT + EY RGT+G++SIK ++RNG VV A V E M+IT G
Sbjct: 768 -VLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQVAEGDEFMMITNAG 826
Query: 813 ILIRTRVSEIRKMGRSTQGVILITVENKSKLCGVQRLCKI 852
L+RTRV+E+ ++GR+TQGV LI + G+QR+ +I
Sbjct: 827 TLVRTRVAEVSQVGRNTQGVTLIRTSEGESVVGLQRIDEI 866
>UNIPROTKB|Q8A9B6 [details] [associations]
symbol:gyrA "DNA gyrase subunit A" species:226186
"Bacteroides thetaiotaomicron VPI-5482" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] HAMAP:MF_01897 InterPro:IPR002205 InterPro:IPR005743
InterPro:IPR006691 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 Pfam:PF03989 SMART:SM00434 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.1360.40
InterPro:IPR024946 EMBL:AE015928 GenomeReviews:AE015928_GR
GO:GO:0009295 GO:GO:0006265 KO:K02469 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 OMA:IAQEDVV TIGRFAMs:TIGR01063
ProtClustDB:PRK05560 HSSP:P09097 RefSeq:NP_809812.1
ProteinModelPortal:Q8A9B6 SMR:Q8A9B6 GeneID:1076273
KEGG:bth:BT_0899 PATRIC:21056597 BioCyc:BTHE226186:GJXV-915-MONOMER
Uniprot:Q8A9B6
Length = 858
Score = 1255 (446.8 bits), Expect = 2.7e-204, Sum P(2) = 2.7e-204
Identities = 239/413 (57%), Positives = 314/413 (76%)
Query: 8 VISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCA 67
+I I +EEEM SY+DY+MSVIV RALPDVRDG KPVHRR+L+ M E+ N ++P+ K A
Sbjct: 7 IIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPYKKSA 66
Query: 68 RVVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTECRL 127
R+VGE +GKYHPHGD S+Y A+VRMAQ +++R LVDGQGNFGS+DGDS AAMRYTE RL
Sbjct: 67 RIVGEVLGKYHPHGDSSVYYAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYTEARL 126
Query: 128 NKISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNL 187
NK+ ++ DL KET+DF N+D EP V+PTRIPNLL+NG+SGIAVGMATN+PPHNL
Sbjct: 127 NKLGEAMMDDLYKETVDFEPNFDNTLTEPKVMPTRIPNLLVNGASGIAVGMATNMPPHNL 186
Query: 188 TEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRAKTH 247
+EVID + N E ++ +L+ + APDFPT G IYG+S V +GY TG+GRV++RAK
Sbjct: 187 SEVIDACEAYIDNQEITVEELMTYVKAPDFPTGGYIYGISGVREGYLTGRGRVVMRAKAE 246
Query: 248 IEEFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVIEL 307
IE ++ I++ E+PY VNK L++ I+ LV +K++E ISN DESD+ GMRIVI++
Sbjct: 247 IETGQTHDK--IVVTEIPYNVNKAELIKYIADLVNDKRIEGISNANDESDRDGMRIVIDV 304
Query: 308 KRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVIKRRTI 367
KR+ +VLNKLYK T LQ +FG+N +ALV+G+PK LNL++++ YF+ HR EV+ RRT
Sbjct: 305 KRDANASVVLNKLYKMTALQTSFGVNNVALVHGRPKTLNLRDMIKYFVEHRHEVVIRRTQ 364
Query: 368 FELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDV 420
F+LRKA+E AHILEGL IA NID I+IIR+ TP +A +IE +NL ++
Sbjct: 365 FDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER-FNLTEI 416
Score = 744 (267.0 bits), Expect = 2.7e-204, Sum P(2) = 2.7e-204
Identities = 147/430 (34%), Positives = 271/430 (63%)
Query: 447 DMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVIDLTDILSNSKRXXXXXXXX 506
+ + L++IQ++ I++M L++LT + Q ++ +YE ++K++ L IL++ +
Sbjct: 409 ERFNLTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESILADDEVCRKVMKDE 468
Query: 507 XXXXKNKYGSHKKNIRRSEIILNAINPSTEDLIASQDMVITLSNLGYIKSQPISEYRAQK 566
K KYG RRSEI+ ++ + ED A M+IT+S++GYIK P++E+RAQ
Sbjct: 469 LLEVKAKYGDE----RRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRTPLTEFRAQN 524
Query: 567 RGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKVWQIPQGSRNSRGKPIIN 626
RGG G K T+D D++ ++ A H+ ++ F+ G+ YWLKV++IP+G++NS+G+ I N
Sbjct: 525 RGGVGSKGTETRDADFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQN 584
Query: 627 MFSLKNKEKITVILPLSN-NKRDFPKNNYVFMSTSLGIVKKTLLSNFSNPRKSGIIAVNL 685
+ ++ + + +T L + + + ++ ++YV T G++KKTLL +S PR++G+ A+ +
Sbjct: 585 LLNIDSDDSVTAYLRVKSLDDTEYINSHYVLFCTKKGVIKKTLLEQYSRPRQNGVNAITI 644
Query: 686 SNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAMGRSARGVIGMRLEK--KQKVIA 743
+D +I +T+G+ +I++ + +G+A+RF+E +VR MGR+A GV G+ L+ + +VI
Sbjct: 645 REDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVMGRTATGVRGITLDNDGQDEVIG 704
Query: 744 LL-VSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLVNRY 802
++ + + + +SV+ +E GYGKR+ I++Y K NRG KG+ ++ ++ GK+V V
Sbjct: 705 MICIKDLETESVMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITEKTGKLVTIKSVTDE 764
Query: 803 HEIMLITTGGILIRTRVSEIRKMGRSTQGVILITVENKSKLCGVQRLCKITM--IKKYIP 860
+++M+I GI IR +V+++R MGR+TQGV LI +E ++ G +CK+ ++ +P
Sbjct: 765 NDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQIG--SVCKVMTESLEDEVP 822
Query: 861 VITIDGPTAS 870
+G S
Sbjct: 823 AEEAEGTIVS 832
>UNIPROTKB|Q74H88 [details] [associations]
symbol:gyrA "DNA gyrase subunit A" species:243231
"Geobacter sulfurreducens PCA" [GO:0003918 "DNA topoisomerase type
II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01897 InterPro:IPR002205 InterPro:IPR005743
InterPro:IPR006691 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989 SMART:SM00434
GO:GO:0005524 GO:GO:0005737 GO:GO:0005694 GO:GO:0007059
GO:GO:0006261 EMBL:AE017180 GenomeReviews:AE017180_GR
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0009295 GO:GO:0006265
HOGENOM:HOG000076278 KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 OMA:IAQEDVV TIGRFAMs:TIGR01063 ProtClustDB:PRK05560
Gene3D:1.10.268.10 HSSP:P09097 RefSeq:NP_951066.1
ProteinModelPortal:Q74H88 SMR:Q74H88 GeneID:2685711
KEGG:gsu:GSU0004 PATRIC:22022745 BioCyc:GSUL243231:GH27-4-MONOMER
Uniprot:Q74H88
Length = 857
Score = 1875 (665.1 bits), Expect = 1.5e-193, P = 1.5e-193
Identities = 388/852 (45%), Positives = 563/852 (66%)
Query: 10 SILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARV 69
++ +E+EM +SY+DYAMSVI+GRALPDVRDGLKPVHRR L+AM++M N +N+P+ K ARV
Sbjct: 10 AVNIEDEMKRSYMDYAMSVIIGRALPDVRDGLKPVHRRCLYAMYDMGNDYNKPYKKSARV 69
Query: 70 VGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTECRLNK 129
VG+ +GKYHPHGD + YD +VRMAQ FSLR LVDGQGNFGS+DGDS AAMRYTE R+ +
Sbjct: 70 VGDVIGKYHPHGDAAAYDTIVRMAQDFSLRYPLVDGQGNFGSVDGDSPAAMRYTEIRMEQ 129
Query: 130 ISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTE 189
+++ELL DL+KET+D NYDG EP VLP++ PNLL+NGSSGIAVGMATNIPPHNLTE
Sbjct: 130 LAHELLNDLEKETVDLGPNYDGSLTEPLVLPSKFPNLLVNGSSGIAVGMATNIPPHNLTE 189
Query: 190 VIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRAKTHIE 249
VI+G++ + NP S +L+ +IP PDFPT G IYG + GY TG+G V +RA+ IE
Sbjct: 190 VINGIIATIENPNISFEELLALIPGPDFPTGGFIYGREGILQGYRTGRGIVQMRARASIE 249
Query: 250 EFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVIELKR 309
+ R +II+ E+PYQVNK +L+ KI++LV+EKKLE IS++RDESD+ GMRIVI+LKR
Sbjct: 250 THKKTERQSIIVTEIPYQVNKANLITKIAELVREKKLEGISDIRDESDRDGMRIVIDLKR 309
Query: 310 NEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVIKRRTIFE 369
+E P+++LN LYKQTQ+Q +FG+NMLA+V G+P++L L++ + +FI HR+E++ RRTIF+
Sbjct: 310 DENPQVILNHLYKQTQMQTSFGINMLAIVAGRPRVLTLRDAIGHFIDHRREIVTRRTIFD 369
Query: 370 LRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIGFNKK 429
L+KA AHILEG IAL +D I++IR + TP EAK ++ ++ + + +G
Sbjct: 370 LKKAEARAHILEGYKIALDWLDAVIELIRGSKTPAEAKEGLMSGLFSDEEWLRKMGL--- 426
Query: 430 NYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVIDL 489
+ I++ Q +L+++QAQEIL + L RLT +E+ KI+ +Y++++K + L
Sbjct: 427 ---PLPAIHS----QYQKPVRLTEVQAQEILNLRLHRLTGLERDKILQEYDDILKYIARL 479
Query: 490 TDILSNSKRXXXXXXXXXXXXKNKYGSHKKNIRRSEIILNAINPSTEDLIASQDMVITLS 549
+IL++ K K+G RR+EI+ + S ED I +D+V+T+S
Sbjct: 480 KEILASEAEILKIIVGELRELKEKFGDE----RRTEIVDRSAEISLEDTIVEEDVVVTVS 535
Query: 550 NLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKV 609
+ GYIK +S+YR+Q+RGG+GK M TK+ED++ LF+A++ D++L F++ G++Y +KV
Sbjct: 536 HTGYIKRTAVSQYRSQRRGGKGKTGMKTKEEDFVEHLFVASSKDFMLFFTDAGKVYQIKV 595
Query: 610 WQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRD----FPKNNYVFMSTSL---- 661
++IP+G R +RGK I+N+ +L+ E+IT IL + D V + L
Sbjct: 596 YEIPEGGRATRGKAIVNLLNLQENEQITAILSVKGFDDDRNIIMATRLGVVKKSPLREYA 655
Query: 662 GIVKKTLLS-NFSNPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSV 720
I +++ N + K +A+ +D L+ A +G I D + + V
Sbjct: 656 NIRSGGIIAVNLDDGDKLIAVALTDGRQDVLL--ASKNGK-SIRFHEDDARPMGRVSRGV 712
Query: 721 RAMGRSARGV-IGMRLEKKQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTK 779
R M V IGM + + N ++ T TENG+GKRT + EY +RG K
Sbjct: 713 RGMSLEDDDVVIGMEI---------INPNATGSTIFTVTENGFGKRTELDEYRVQSRGGK 763
Query: 780 GIISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILITVEN 839
GII+IKT +RNG VV V +++MLIT G ++R V++ +GR+TQGV L+T E
Sbjct: 764 GIITIKTTERNGCVVDIMQVTDENDLMLITDQGKILRIPVAQFSVIGRNTQGVRLMTAEQ 823
Query: 840 KSKLCGVQRLCK 851
++ V +L +
Sbjct: 824 NERIVAVAKLAE 835
>TIGR_CMR|GSU_0004 [details] [associations]
symbol:GSU_0004 "DNA gyrase, A subunit" species:243231
"Geobacter sulfurreducens PCA" [GO:0003918 "DNA topoisomerase type
II (ATP-hydrolyzing) activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006265 "DNA topological change"
evidence=ISS] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01897 InterPro:IPR002205
InterPro:IPR005743 InterPro:IPR006691 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989
SMART:SM00434 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 EMBL:AE017180 GenomeReviews:AE017180_GR
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0009295 GO:GO:0006265
HOGENOM:HOG000076278 KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 OMA:IAQEDVV TIGRFAMs:TIGR01063 ProtClustDB:PRK05560
Gene3D:1.10.268.10 HSSP:P09097 RefSeq:NP_951066.1
ProteinModelPortal:Q74H88 SMR:Q74H88 GeneID:2685711
KEGG:gsu:GSU0004 PATRIC:22022745 BioCyc:GSUL243231:GH27-4-MONOMER
Uniprot:Q74H88
Length = 857
Score = 1875 (665.1 bits), Expect = 1.5e-193, P = 1.5e-193
Identities = 388/852 (45%), Positives = 563/852 (66%)
Query: 10 SILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARV 69
++ +E+EM +SY+DYAMSVI+GRALPDVRDGLKPVHRR L+AM++M N +N+P+ K ARV
Sbjct: 10 AVNIEDEMKRSYMDYAMSVIIGRALPDVRDGLKPVHRRCLYAMYDMGNDYNKPYKKSARV 69
Query: 70 VGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTECRLNK 129
VG+ +GKYHPHGD + YD +VRMAQ FSLR LVDGQGNFGS+DGDS AAMRYTE R+ +
Sbjct: 70 VGDVIGKYHPHGDAAAYDTIVRMAQDFSLRYPLVDGQGNFGSVDGDSPAAMRYTEIRMEQ 129
Query: 130 ISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTE 189
+++ELL DL+KET+D NYDG EP VLP++ PNLL+NGSSGIAVGMATNIPPHNLTE
Sbjct: 130 LAHELLNDLEKETVDLGPNYDGSLTEPLVLPSKFPNLLVNGSSGIAVGMATNIPPHNLTE 189
Query: 190 VIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRAKTHIE 249
VI+G++ + NP S +L+ +IP PDFPT G IYG + GY TG+G V +RA+ IE
Sbjct: 190 VINGIIATIENPNISFEELLALIPGPDFPTGGFIYGREGILQGYRTGRGIVQMRARASIE 249
Query: 250 EFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVIELKR 309
+ R +II+ E+PYQVNK +L+ KI++LV+EKKLE IS++RDESD+ GMRIVI+LKR
Sbjct: 250 THKKTERQSIIVTEIPYQVNKANLITKIAELVREKKLEGISDIRDESDRDGMRIVIDLKR 309
Query: 310 NEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVIKRRTIFE 369
+E P+++LN LYKQTQ+Q +FG+NMLA+V G+P++L L++ + +FI HR+E++ RRTIF+
Sbjct: 310 DENPQVILNHLYKQTQMQTSFGINMLAIVAGRPRVLTLRDAIGHFIDHRREIVTRRTIFD 369
Query: 370 LRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIGFNKK 429
L+KA AHILEG IAL +D I++IR + TP EAK ++ ++ + + +G
Sbjct: 370 LKKAEARAHILEGYKIALDWLDAVIELIRGSKTPAEAKEGLMSGLFSDEEWLRKMGL--- 426
Query: 430 NYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVIDL 489
+ I++ Q +L+++QAQEIL + L RLT +E+ KI+ +Y++++K + L
Sbjct: 427 ---PLPAIHS----QYQKPVRLTEVQAQEILNLRLHRLTGLERDKILQEYDDILKYIARL 479
Query: 490 TDILSNSKRXXXXXXXXXXXXKNKYGSHKKNIRRSEIILNAINPSTEDLIASQDMVITLS 549
+IL++ K K+G RR+EI+ + S ED I +D+V+T+S
Sbjct: 480 KEILASEAEILKIIVGELRELKEKFGDE----RRTEIVDRSAEISLEDTIVEEDVVVTVS 535
Query: 550 NLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKV 609
+ GYIK +S+YR+Q+RGG+GK M TK+ED++ LF+A++ D++L F++ G++Y +KV
Sbjct: 536 HTGYIKRTAVSQYRSQRRGGKGKTGMKTKEEDFVEHLFVASSKDFMLFFTDAGKVYQIKV 595
Query: 610 WQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRD----FPKNNYVFMSTSL---- 661
++IP+G R +RGK I+N+ +L+ E+IT IL + D V + L
Sbjct: 596 YEIPEGGRATRGKAIVNLLNLQENEQITAILSVKGFDDDRNIIMATRLGVVKKSPLREYA 655
Query: 662 GIVKKTLLS-NFSNPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSV 720
I +++ N + K +A+ +D L+ A +G I D + + V
Sbjct: 656 NIRSGGIIAVNLDDGDKLIAVALTDGRQDVLL--ASKNGK-SIRFHEDDARPMGRVSRGV 712
Query: 721 RAMGRSARGV-IGMRLEKKQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTK 779
R M V IGM + + N ++ T TENG+GKRT + EY +RG K
Sbjct: 713 RGMSLEDDDVVIGMEI---------INPNATGSTIFTVTENGFGKRTELDEYRVQSRGGK 763
Query: 780 GIISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILITVEN 839
GII+IKT +RNG VV V +++MLIT G ++R V++ +GR+TQGV L+T E
Sbjct: 764 GIITIKTTERNGCVVDIMQVTDENDLMLITDQGKILRIPVAQFSVIGRNTQGVRLMTAEQ 823
Query: 840 KSKLCGVQRLCK 851
++ V +L +
Sbjct: 824 NERIVAVAKLAE 835
>UNIPROTKB|A9WK19 [details] [associations]
symbol:gyrA "DNA gyrase subunit A" species:324602
"Chloroflexus aurantiacus J-10-fl" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01897 InterPro:IPR002205 InterPro:IPR005743
InterPro:IPR006691 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 Pfam:PF03989 SMART:SM00434 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.1360.40
InterPro:IPR024946 EMBL:CP000909 GenomeReviews:CP000909_GR
GO:GO:0009295 GO:GO:0006265 eggNOG:COG0188 KO:K02469 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 OMA:IAQEDVV TIGRFAMs:TIGR01063
ProtClustDB:PRK05560 HOGENOM:HOG000076279 RefSeq:YP_001634859.1
ProteinModelPortal:A9WK19 SMR:A9WK19 STRING:A9WK19 GeneID:5828345
KEGG:cau:Caur_1241 PATRIC:21413315
BioCyc:CAUR324602:GIXU-1260-MONOMER Uniprot:A9WK19
Length = 822
Score = 1221 (434.9 bits), Expect = 3.4e-193, Sum P(2) = 3.4e-193
Identities = 247/469 (52%), Positives = 338/469 (72%)
Query: 13 LEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGE 72
+ EM +YL YAMSVIV RALPD RDGLKPV RR+L+ M +M N+P+ K AR+VG+
Sbjct: 11 ITNEMRTAYLSYAMSVIVSRALPDARDGLKPVQRRILYGMWDMGFRSNQPYKKSARIVGD 70
Query: 73 TMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTECRLNKISN 132
+GK HPHGD ++YDAL RMAQ +S+R L+DGQGNFGSIDGD AAMRYTE RL I+
Sbjct: 71 VLGKMHPHGDSAVYDALARMAQPWSMRYPLIDGQGNFGSIDGDPPAAMRYTEARLAPIAE 130
Query: 133 ELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVID 192
ELL +++K+T+DF N+DG +EP VLP +PNLL+NG+SGIAVGMATNIPPHNL E+ D
Sbjct: 131 ELLSEIEKDTVDFRDNFDGSYREPVVLPAILPNLLLNGASGIAVGMATNIPPHNLGELCD 190
Query: 193 GVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRAKTHIEEFN 252
+ Y++ +PE ++ +L+KIIP PDFPTAG+I G + Y TG+G++ +RAKTHIEE
Sbjct: 191 AISYLIEHPEATVEELMKIIPGPDFPTAGLILGTEGILAAYSTGRGQITLRAKTHIEEAG 250
Query: 253 RENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVIELKRNEI 312
R I++ ELPYQVNK L E+I++LVK++K+E I ++RDESD++GMR+VI LK++
Sbjct: 251 R-GAFMIVVTELPYQVNKARLQERIAELVKDRKIEGIRDVRDESDRTGMRLVILLKQDAQ 309
Query: 313 PEIVLNKLYKQTQLQNTFGMNMLALV-NG-QPKLLNLKEILYYFILHRKEVIKRRTIFEL 370
P+ VLN LYK TQ+Q TFG+NMLALV +G QP++L LK +L +I HR+EVI+RRT F+L
Sbjct: 310 PKKVLNALYKHTQMQTTFGINMLALVEHGRQPRVLTLKRLLQEYITHRQEVIRRRTEFDL 369
Query: 371 RKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPD--VSKIIGFNK 428
+ARE AHILEGL IAL N+D IQ IR + T + A+N ++ S ++L + I+
Sbjct: 370 ARARERAHILEGLKIALDNLDAVIQTIRDSRTAESARNNLM-SNFSLTERQAQAILDLQL 428
Query: 429 KNYNTIS--KINNISKLQNNDMYKLSDIQA--QEILKMPLQRLTNMEQK 473
+ + KI + + + +L DI A +++L + Q LT +++K
Sbjct: 429 RRLAALERKKIEDEYREVIKLIAELEDILANPRKVLHLIQQDLTRLKEK 477
Score = 673 (242.0 bits), Expect = 3.4e-193, Sum P(2) = 3.4e-193
Identities = 152/417 (36%), Positives = 241/417 (57%)
Query: 433 TISKINNISKLQNNDM--YKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVIDLT 490
TI +NN M + L++ QAQ IL + L+RL +E+KKI ++Y VIK + +L
Sbjct: 395 TIRDSRTAESARNNLMSNFSLTERQAQAILDLQLRRLAALERKKIEDEYREVIKLIAELE 454
Query: 491 DILSNSKRXXXXXXXXXXXXKNKYGSHKKNIRRSEIILNAINP-STEDLIASQDMVITLS 549
DIL+N ++ K KYG RR+ II + S EDLI ++ITL+
Sbjct: 455 DILANPRKVLHLIQQDLTRLKEKYGDP----RRTRIIPDVTGEVSDEDLIPDVRVMITLT 510
Query: 550 NLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKV 609
+ GYIK Q YR Q+RGGRG K M+T+++D + L N+ D +L F++ G++Y LK
Sbjct: 511 DRGYIKRQLPDAYRTQRRGGRGIKGMLTREQDIVRHLLTCNSLDNLLFFTDRGKVYQLKA 570
Query: 610 WQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLL 669
++P SR ++G P++N+ SL+ E++T +L + R+F Y+ M+T G +K+T L
Sbjct: 571 HEVPDSSRTAKGLPLVNLISLEPGEQVTSMLAV----REFDAE-YLVMATVRGKIKRTQL 625
Query: 670 SNFSNPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAMGRSARG 729
+S R +G+IA+ L D L ++ G DI+L + G+ +RF ++ VR MGR A G
Sbjct: 626 REYSQVRSNGLIAIGLEEGDVLGWVRVSHGHEDILLTTARGQTLRFEQSEVRPMGRPATG 685
Query: 730 VIGMRLEKKQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKR 789
VIG+ L +V+++ ++ + +L T G GKRT + EY R T G+I+IK
Sbjct: 686 VIGINLADGDRVVSMDLAE-EGADLLVVTARGIGKRTALSEYPVKGRATGGVITIKLRND 744
Query: 790 NGKVVAATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILITVENKSKLCGV 846
+V AA +V + + ITTGG+++RT SEI ++GR+TQGV ++ V ++ +
Sbjct: 745 LDEVAAAAVVREHSLLTFITTGGMVLRTSASEISRLGRATQGVTIVNVATGDRVAAL 801
Score = 106 (42.4 bits), Expect = 2.9e-133, Sum P(2) = 2.9e-133
Identities = 47/204 (23%), Positives = 101/204 (49%)
Query: 552 GYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKVWQ 611
G IK + EY +Q R G A+ ++ D + + +++ H+ IL + G+ + +
Sbjct: 618 GKIKRTQLREY-SQVRSN-GLIAIGLEEGDVLGWVRVSHGHEDILLTTARGQTLRFEQSE 675
Query: 612 I-PQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLS 670
+ P G R + G +I + +L + +++ V + L+ D + + T+ GI K+T LS
Sbjct: 676 VRPMG-RPATG--VIGI-NLADGDRV-VSMDLAEEGAD------LLVVTARGIGKRTALS 724
Query: 671 NFSNPRKS--GIIAVNLSNEDFLIGAALTDGSYDIMLF-SDSGKAVRFNENSVRAMGRSA 727
+ ++ G+I + L N+ + AA + ++ F + G +R + + + +GR+
Sbjct: 725 EYPVKGRATGGVITIKLRNDLDEVAAAAVVREHSLLTFITTGGMVLRTSASEISRLGRAT 784
Query: 728 RGVIGMRLEKKQKVIALLVSNNQK 751
+GV + + +V AL V + ++
Sbjct: 785 QGVTIVNVATGDRVAALSVEDPEE 808
Score = 55 (24.4 bits), Expect = 7.0e-128, Sum P(2) = 7.0e-128
Identities = 22/108 (20%), Positives = 43/108 (39%)
Query: 544 MVITLSNLGYIKSQPISEYRAQKRGGRGKKAM-MTKDEDWINQLFIANTHDYILCFSNYG 602
+V+T +G K +SEY + R G + + D D + + H + + G
Sbjct: 710 LVVTARGIG--KRTALSEYPVKGRATGGVITIKLRNDLDEVAAAAVVREHSLLTFITTGG 767
Query: 603 RLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFP 650
+ +I + R ++G I+N+ + ++V P N P
Sbjct: 768 MVLRTSASEISRLGRATQGVTIVNVATGDRVAALSVEDPEENGNGSTP 815
>TIGR_CMR|DET_1630 [details] [associations]
symbol:DET_1630 "DNA gyrase, A subunit" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003916 "DNA topoisomerase
activity" evidence=ISS] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01897
InterPro:IPR002205 InterPro:IPR005743 InterPro:IPR006691
InterPro:IPR013758 InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989
SMART:SM00434 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0006261 EMBL:CP000027 GenomeReviews:CP000027_GR
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 eggNOG:COG0188
HOGENOM:HOG000076278 KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 OMA:IAQEDVV TIGRFAMs:TIGR01063 ProtClustDB:PRK05560
RefSeq:YP_182324.1 ProteinModelPortal:Q3Z625 SMR:Q3Z625
STRING:Q3Z625 GeneID:3229170 KEGG:det:DET1630 PATRIC:21610274
BioCyc:DETH243164:GJNF-1631-MONOMER Uniprot:Q3Z625
Length = 809
Score = 1226 (436.6 bits), Expect = 5.1e-188, Sum P(2) = 5.1e-188
Identities = 238/415 (57%), Positives = 310/415 (74%)
Query: 11 ILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVV 70
I +EEEM SYLDYAMSVIV RALPDVRDGLKPV RR+L+AM+++ N P+ K AR+V
Sbjct: 9 INIEEEMKGSYLDYAMSVIVSRALPDVRDGLKPVQRRILYAMNDLGMKHNTPYKKSARIV 68
Query: 71 GETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTECRLNKI 130
GE +GKYHPHGD S+YDA+VRMAQ FS R LVDGQGNFGS+D D AAMRYTE RL +I
Sbjct: 69 GEVLGKYHPHGDSSVYDAMVRMAQPFSYRYPLVDGQGNFGSVDNDPPAAMRYTEARLAQI 128
Query: 131 SNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEV 190
+ +LL D+DK T+DF+ N+D +EP+VLP RIPNLL+NGSSGIAVGMATNIPPHNL E+
Sbjct: 129 AEQLLTDIDKNTVDFMPNFDASLEEPTVLPARIPNLLMNGSSGIAVGMATNIPPHNLAEL 188
Query: 191 IDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRAKTHIEE 250
+ Y++ NP+C ++DL++ + PDFPT G I G + Y TGKG+++I+AK HI E
Sbjct: 189 CQAICYLIDNPDCGVDDLMQFVSGPDFPTGGTILGTDGIKSAYATGKGKIVIQAKAHIGE 248
Query: 251 FNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVIELKRN 310
+NR AI + E+PYQVNK L+ KI++LVK++K+ IS+LRDESD+ GMR+VIELKR+
Sbjct: 249 V--DNRKAIFVTEIPYQVNKAELVVKIAELVKDRKIVGISDLRDESDRQGMRVVIELKRD 306
Query: 311 EIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVIKRRTIFEL 370
P+ VLN LYK T ++ +F +NMLALV+GQP++L+LKE+L FI R +I RR+ FEL
Sbjct: 307 AEPQQVLNSLYKHTNMRTSFFVNMLALVDGQPQVLSLKEVLKNFIDFRHLIITRRSQFEL 366
Query: 371 RKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEA-KNKIIESTWNLPDVSKII 424
+ A++ AHILEGL AL ID I IIR++ A KN + E +++ I+
Sbjct: 367 KAAKDRAHILEGLKKALDFIDRIIAIIRNSENGDTARKNLVAEFDFSVIQAQAIL 421
Score = 619 (223.0 bits), Expect = 5.1e-188, Sum P(2) = 5.1e-188
Identities = 158/475 (33%), Positives = 269/475 (56%)
Query: 387 LTNIDNFIQII---RSTSTPQEAKNK--IIESTWNLPD-VSKIIGF--NKKNYNTISKIN 438
L N +F +I RS + AK++ I+E D + +II N +N +T K N
Sbjct: 347 LKNFIDFRHLIITRRSQFELKAAKDRAHILEGLKKALDFIDRIIAIIRNSENGDTARK-N 405
Query: 439 NISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVIDLTDILSNSKR 498
+++ + S IQAQ IL + L+RL N+E++KI+++Y ++K++ L D+LS+ ++
Sbjct: 406 LVAE------FDFSVIQAQAILDLQLRRLANLERQKILDEYAELMKRIGYLEDLLSHPEK 459
Query: 499 XXXXXXXXXXXXKNKYGSHKKNIRRSEIILNAINPSTEDLIASQDMVITLSNLGYIKSQP 558
K YG + S+ I EDL+ D+++TLS G+IK P
Sbjct: 460 IYALVKEDAKDLKGSYGQPRATEISSQ---GVIEFRVEDLVPHMDVIVTLSERGFIKRVP 516
Query: 559 ISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKVWQIPQ-GSR 617
+ +R Q RGG G M T++ D + L +++THD +L F+N G+++ L+ + IP SR
Sbjct: 517 ANVFRLQHRGGTGIMGMPTREADAVRFLSVSDTHDTLLFFTNRGKVFSLRCFDIPDDASR 576
Query: 618 NSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFSNPRK 677
++G I+N+ + E+IT IL L + FP ++++ M+T+ G +KKT L F+ R
Sbjct: 577 IAKGTAIVNLIPVTQDERITAILDL----KSFPADHFLLMATNKGEIKKTSLQEFTAVRS 632
Query: 678 SGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAMGRSARGVIGMRLEK 737
SG+IA++L+ D L+ A T DI+L + G+++RF + +R R++ GV + L K
Sbjct: 633 SGLIAMDLATSDELVAAVETTEEKDILLATRMGQSIRFPVSELRTSLRASGGVKAIVLSK 692
Query: 738 KQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAAT 797
+V+++ V+ + V+T TENG GK T I+EY + +R G+I+ K + G+VVA+
Sbjct: 693 GDEVVSMDVAQ-EGTLVITVTENGAGKLTAIEEYPQQHRAGSGVINFKVVDKTGEVVASK 751
Query: 798 LVNRYHEIMLITTGGILIRTRVSE------IRKMGRSTQGVILITVENKSKLCGV 846
+V+ ++MLI+ G++ RT+V E I MGR+TQGV ++ +E ++ V
Sbjct: 752 VVSETDQMMLISADGMVTRTQVKEEDPSHGIPIMGRATQGVRVMRLEEGDRVVAV 806
Score = 43 (20.2 bits), Expect = 3.8e-127, Sum P(2) = 3.8e-127
Identities = 7/23 (30%), Positives = 17/23 (73%)
Query: 1084 RSGEVISAEVIGLDRNFVIINAD 1106
++GEV++++V+ ++I+AD
Sbjct: 743 KTGEVVASKVVSETDQMMLISAD 765
Score = 42 (19.8 bits), Expect = 4.9e-127, Sum P(2) = 4.9e-127
Identities = 50/219 (22%), Positives = 85/219 (38%)
Query: 1019 VSMSDLLINLIKRDIRDKTRNLSPLKCPEQAHLL--NTSKMNINQV-----VNQILDCFA 1071
+S+SD L+ R K +L P+ A + T+ +N+ V + ILD
Sbjct: 544 LSVSDTHDTLLFFTNRGKVFSLRCFDIPDDASRIAKGTAIVNLIPVTQDERITAILD-LK 602
Query: 1072 TLFKESLLRHDMRSGEV--ISAEVIGLDRNFVIINADLKS--EAFIPIEEFKNDNGELEV 1127
+ + L GE+ S + R+ +I DL + E +E + + L
Sbjct: 603 SFPADHFLLMATNKGEIKKTSLQEFTAVRSSGLIAMDLATSDELVAAVETTEEKDILLAT 662
Query: 1128 KIGDFVSVAIESLENGF----GDTILSRDKAKRLASWLSLEKAMESGEIITGTINGKVKG 1183
++G + + L G + K + +S++ A E +IT T NG G
Sbjct: 663 RMGQSIRFPVSELRTSLRASGGVKAIVLSKGDEV---VSMDVAQEGTLVITVTENGA--G 717
Query: 1184 GLTVLTNGLKAFLPGSLVDIRPVKDTTPFEGKTMDFKVI 1222
LT + + GS V V D T G+ + KV+
Sbjct: 718 KLTAIEEYPQQHRAGSGVINFKVVDKT---GEVVASKVV 753
>TIGR_CMR|SPO_2051 [details] [associations]
symbol:SPO_2051 "DNA gyrase, A subunit" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003916 "DNA topoisomerase activity"
evidence=ISS] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01897
InterPro:IPR002205 InterPro:IPR005743 InterPro:IPR006691
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 Pfam:PF03989 SMART:SM00434 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006261
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265
HOGENOM:HOG000076278 KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 OMA:IAQEDVV TIGRFAMs:TIGR01063 ProtClustDB:PRK05560
Gene3D:1.10.268.10 RefSeq:YP_167281.1 ProteinModelPortal:Q5LRS4
SMR:Q5LRS4 GeneID:3193149 KEGG:sil:SPO2051 PATRIC:23377441
Uniprot:Q5LRS4
Length = 891
Score = 1723 (611.6 bits), Expect = 1.7e-187, Sum P(2) = 1.7e-187
Identities = 337/738 (45%), Positives = 503/738 (68%)
Query: 10 SILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARV 69
++ +E EM SYLDYAMSVIV RA+PD+RDGLKPVHRR+L+AMHE N ++P+ K AR
Sbjct: 4 TVSIESEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNGHDKPYRKSARP 63
Query: 70 VGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTECRLNK 129
VG+ MGKYHPHGD +IYDALVRMAQ FS+ L+DGQGNFGS+DGD+ AAMRYTE R++K
Sbjct: 64 VGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDK 123
Query: 130 ISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTE 189
+ LL D+DKET+DF NYDGK++EP+VLP R PN+L+NG+ GIAVGMATNIPPHNL E
Sbjct: 124 PAAFLLSDIDKETVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 183
Query: 190 VIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRAKTHIE 249
V+D L ++ +P+ + LI +P PDFPT G++ G S Y G+G VIIRAKT +E
Sbjct: 184 VVDATLALIDDPDLTSEQLIDYVPGPDFPTGGVMLGRSGARKAYLEGRGSVIIRAKTRVE 243
Query: 250 EFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVIELKR 309
E R++R AII+DE+PYQVNK +++EKI++ V+EK++E +++++DESD++G+R+V+ELKR
Sbjct: 244 EL-RKDRYAIIVDEIPYQVNKATMIEKIAEAVREKRIEGVAHVQDESDRNGVRVVVELKR 302
Query: 310 NEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVIKRRTIFE 369
+ PE+VLN+LY+ + +Q +FG NMLAL G+P+ L L+ L FI R+EV+ RRT +
Sbjct: 303 DATPEVVLNQLYRFSPMQTSFGCNMLALNGGRPEQLTLRRFLTCFIDFREEVVARRTAHD 362
Query: 370 LRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIGFNKK 429
LRKARE +H+L GL +A++N+D + IRS++ +A+ K++ W D++ +
Sbjct: 363 LRKARERSHVLCGLAVAVSNVDEVVATIRSSADAADAREKLMTRRWPAADIAAYL----- 417
Query: 430 NYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVIDL 489
I + +SK+ + Y L+++QA+ IL + LQRLT + K++ ++ E + K+ +
Sbjct: 418 --RLID--DPLSKMNEDGTYNLTEVQARAILDLRLQRLTQLGVKEVTDELEVLAGKIKEY 473
Query: 490 TDILSNSKRXXXXXXXXXXXXKNKYGSHKKNIRRSEIILNAINPSTEDLIASQDMVITLS 549
+IL + +R + ++ RR+EI+ + + EDLI +DMV+T++
Sbjct: 474 LEILGSRERIMGIIADELREVREQFAVP----RRTEIVDWSGDMEDEDLIEREDMVVTVT 529
Query: 550 NLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKV 609
+ GYIK P++++RAQKRGG+G M TK+ED + LF+ANTH +L F+ G +Y LK
Sbjct: 530 SGGYIKRTPLADFRAQKRGGKGLSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKT 589
Query: 610 WQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLL 669
W++PQ R +GK I+N+ + I I+P+ ++ VF +TS G V++ L
Sbjct: 590 WRLPQSGRTGKGKAIVNILPIPTGVSIAAIMPVDVPDEEWDALQIVF-ATSAGDVRRNAL 648
Query: 670 SNFSNPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAM-GRSAR 728
S+F+N +++G IA+ L + L+ A + D+ML ++SG+A+RF VR GR +
Sbjct: 649 SDFTNVKRNGKIAMKLPEDVELVNARICSEEDDVMLITNSGRAIRFPTTDVRVFKGRDST 708
Query: 729 GVIGMRLEKKQKVIALLV 746
GV G+RL+ +V+++ V
Sbjct: 709 GVRGIRLQNGDRVVSMSV 726
Score = 117 (46.2 bits), Expect = 1.7e-187, Sum P(2) = 1.7e-187
Identities = 31/98 (31%), Positives = 46/98 (46%)
Query: 754 VLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLVNRYHEIMLITTGGI 813
+LT T G GK + +Y RG +G+ +I R G + A+ V +IML T+GG
Sbjct: 785 ILTITVTGLGKLSSSHDYPVRGRGGQGVKAISAGPRGGTLAASFPVLMDDQIMLATSGGQ 844
Query: 814 LIRTRVSEIRKMGRSTQGVILITVENKSKLCGVQRLCK 851
IR V I RS GV + ++ V R+ +
Sbjct: 845 SIRVPVEGISFRSRSAGGVRVFNTSKGEEVVSVARIAE 882
>UNIPROTKB|Q7NC97 [details] [associations]
symbol:gyrA "DNA gyrase subunit A" species:251221
"Gloeobacter violaceus PCC 7421" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01897 InterPro:IPR002205 InterPro:IPR005743
InterPro:IPR006691 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 Pfam:PF03989 SMART:SM00434 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0009295 GO:GO:0006265 KO:K02469
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 OMA:IAQEDVV
TIGRFAMs:TIGR01063 ProtClustDB:PRK05560 EMBL:BA000045
GenomeReviews:BA000045_GR HSSP:P09097 RefSeq:NP_926028.1
ProteinModelPortal:Q7NC97 SMR:Q7NC97 GeneID:2601483
KEGG:gvi:gvip425 PATRIC:22045635
BioCyc:GVIO251221:GH9A-3132-MONOMER Uniprot:Q7NC97
Length = 840
Score = 1226 (436.6 bits), Expect = 1.6e-182, Sum P(2) = 1.6e-182
Identities = 236/408 (57%), Positives = 305/408 (74%)
Query: 8 VISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCA 67
+I L EM +SYL+YAMSVIVGRALPD RDGLKPVHRR+LFAMHE+ +RP+ KCA
Sbjct: 4 IIPTNLRNEMQRSYLEYAMSVIVGRALPDARDGLKPVHRRILFAMHELGLGPDRPYRKCA 63
Query: 68 RVVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTECRL 127
RVVG+ +GKYHPHGD ++YDALVR+AQ FS R L+DG GNFGS+D D AAMRYTECRL
Sbjct: 64 RVVGDVLGKYHPHGDSAVYDALVRLAQDFSTRYLLIDGHGNFGSVDNDPPAAMRYTECRL 123
Query: 128 NKISNE-LLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHN 186
++ + LL DL+ ET+DF N+DG ++EP+VLP+R+P LL+NGS+GIAVGMATNIPPH
Sbjct: 124 TPLTRDTLLADLEAETVDFSDNFDGSQQEPTVLPSRLPQLLLNGSAGIAVGMATNIPPHQ 183
Query: 187 LTEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRAKT 246
L E++DGV +L NP I +L++ IP PDFPT G I G S + + Y TG+G + +R
Sbjct: 184 LGELVDGVTALLANPNLGIPELMRYIPGPDFPTGGTILGQSGIREAYTTGRGSITMRGVA 243
Query: 247 HIEEFN---RENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRI 303
IE R +R AI+I ELPYQV K +L+EKI++LV +K+++ IS++RDESD+ G+R
Sbjct: 244 AIETIQVRGRPDREAIVITELPYQVCKAALIEKIAELVNDKRIDGISDIRDESDRDGLRA 303
Query: 304 VIELKRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVIK 363
VIELKR+ P +VLN L+K T LQ FG NMLALVNG+P+LLNLKE L FI R EVI
Sbjct: 304 VIELKRDAYPRVVLNNLFKLTPLQTNFGCNMLALVNGEPRLLNLKEFLQTFIDFRAEVIT 363
Query: 364 RRTIFELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKII 411
RRT +ELRKARE HIL G+ +AL N+++ I +IR+ A+ +++
Sbjct: 364 RRTHYELRKARERDHILMGMLVALANLESVIALIRAADDTASARAELV 411
Score = 567 (204.7 bits), Expect = 1.6e-182, Sum P(2) = 1.6e-182
Identities = 130/412 (31%), Positives = 228/412 (55%)
Query: 449 YKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVIDLTDILSNSKRXXXXXXXXXX 508
++LS+ QA+ IL+M L+RLT ME +I ++ +I K+ DL+D+L +R
Sbjct: 414 FELSEAQAEAILQMQLRRLTGMEAGRIEAEHRELIAKIADLSDVLERRERIDQIIRDELL 473
Query: 509 XXKNKYGSHKKNI-RRSEIILNAINPSTEDLIASQDMVITLSNLGYIKSQPISEYRAQKR 567
K + ++ I ++E I+ + DLIA+Q+MV+ ++ GYIK P+ + Q+R
Sbjct: 474 TAKQRLNDPRRTIIEKAE---GEIDDA--DLIANQEMVVLVTEQGYIKRLPVDTFDRQRR 528
Query: 568 GGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKVWQIPQGSRNSRGKPIINM 627
RGK +++D + HD +L F+N G +Y L+ +QIP GSR ++G P++ +
Sbjct: 529 ATRGKSGARMREDDAVEHFITCCNHDTVLFFTNRGVVYALRGYQIPAGSRTAKGTPVVQL 588
Query: 628 FSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFSNPRKSGIIAVNLSN 687
+ +EK+T I+P+ ++F + ++ M T G +KKT L+ F+N R +G+IA+ L
Sbjct: 589 LPIPIEEKVTSIVPV----QEFASDEFLVMLTRTGFIKKTALAAFANLRANGLIAIGLEE 644
Query: 688 EDFLIGAALTDGSYDIMLFSDSGKAVRF--NENSVRAMGRSARGVIGMRLEKKQKVIAL- 744
D L DI++ S +G A+RF +E +R +GR+ARGV M L K +++++
Sbjct: 645 GDELRWVRRARAEDDILVGSRAGMAIRFRADEEQLRPLGRTARGVKSMELRKGDELVSMD 704
Query: 745 LVSNNQKQS----------VLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVV 794
++S Q++ VL T +G+GKR E+ NRG G+I+ K + ++
Sbjct: 705 ILSCEQRERAEANGECGPWVLVVTADGFGKRVPFSEFRAQNRGGMGVIATKFRDQGDELA 764
Query: 795 AATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILITVENKSKLCGV 846
A +V+ E+M++T G++IR + EI + R+ GV + ++ + GV
Sbjct: 765 ALRVVSCEDELMIVTARGVIIRQQSEEISQQSRAATGVRVQRLDEDDTIVGV 816
Score = 106 (42.4 bits), Expect = 8.5e-134, Sum P(2) = 8.5e-134
Identities = 50/230 (21%), Positives = 96/230 (41%)
Query: 528 LNAINPSTEDLIASQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDE-DWINQL 586
+ +I P E AS + ++ L+ G+IK ++ + + G + DE W+ +
Sbjct: 597 VTSIVPVQE--FASDEFLVMLTRTGFIKKTALAAFANLRANGLIAIGLEEGDELRWVRR- 653
Query: 587 FIANTHDYILCFSNYGRLYWLKV--WQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSN 644
A D IL S G + Q+ R +RG + L+ +++ + LS
Sbjct: 654 --ARAEDDILVGSRAGMAIRFRADEEQLRPLGRTARG---VKSMELRKGDELVSMDILSC 708
Query: 645 NKRDFPKNN-----YVFMSTSLGIVKKTLLSNF--SNPRKSGIIAVNLSNE-DFLIGAAL 696
+R+ + N +V + T+ G K+ S F N G+IA ++ D L +
Sbjct: 709 EQRERAEANGECGPWVLVVTADGFGKRVPFSEFRAQNRGGMGVIATKFRDQGDELAALRV 768
Query: 697 TDGSYDIMLFSDSGKAVRFNENSVRAMGRSARGVIGMRLEKKQKVIALLV 746
++M+ + G +R + R+A GV RL++ ++ + V
Sbjct: 769 VSCEDELMIVTARGVIIRQQSEEISQQSRAATGVRVQRLDEDDTIVGVAV 818
>UNIPROTKB|P35885 [details] [associations]
symbol:gyrA "DNA gyrase subunit A" species:100226
"Streptomyces coelicolor A3(2)" [GO:0003918 "DNA topoisomerase type
II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01897 InterPro:IPR002205 InterPro:IPR005743
InterPro:IPR006691 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 Pfam:PF03989 SMART:SM00434 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 GenomeReviews:AL645882_GR
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0009295 GO:GO:0006265
eggNOG:COG0188 HOGENOM:HOG000076278 KO:K02469 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 OMA:IAQEDVV TIGRFAMs:TIGR01063
ProtClustDB:PRK05560 EMBL:L27063 EMBL:AL939118 RefSeq:NP_628060.1
ProteinModelPortal:P35885 GeneID:1099309 KEGG:sco:SCO3873
PATRIC:23737530 Uniprot:P35885
Length = 857
Score = 1124 (400.7 bits), Expect = 5.2e-181, Sum P(2) = 5.2e-181
Identities = 235/482 (48%), Positives = 321/482 (66%)
Query: 5 AKEVISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFV 64
A V + LE EM +SYLDYAMSVIV RALPDVRDGLKPVHRRVL+AM++ R F
Sbjct: 10 AMRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPERGFY 69
Query: 65 KCARVVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTE 124
KCARVVG+ MG YHPHGD SIYDALVR+AQ +S+R LVD GNFGS D AAAMRYTE
Sbjct: 70 KCARVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAAAMRYTE 129
Query: 125 CRLNKISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPP 184
C++ +S E++ D+D+ET+DF NYDG+ +EP+VLP R PNLLINGS+GIAVGMATNIPP
Sbjct: 130 CKMAPLSMEMVRDIDEETVDFTDNYDGRSQEPTVLPARFPNLLINGSAGIAVGMATNIPP 189
Query: 185 HNLTEVIDGVLYVLHNPECS----INDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRV 240
HNL EV G + L N E S ++ LI+ I PDFPT ++ G + + Y TG+G +
Sbjct: 190 HNLREVAAGAQWYLENYEASHEELLDALIERIKGPDFPTGALVVGRKGIEEAYRTGRGSI 249
Query: 241 IIRAKTHIEEFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDE-SDKS 299
+RA +EE +NR +++ ELPYQ N +L +KI+ LVK+ K+ I+++RDE S ++
Sbjct: 250 TMRAVVEVEEI--QNRQCLVVTELPYQTNPDNLAQKIADLVKDGKVGGIADVRDETSSRT 307
Query: 300 GMRIVIELKRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRK 359
G R+VI LKR+ + ++VLN LYK T LQ+ FG NMLALV+G P+ L+L + +++ H+
Sbjct: 308 GQRLVIVLKRDAVAKVVLNNLYKHTDLQSNFGANMLALVDGVPRTLSLDAFIRHWVNHQI 367
Query: 360 EVIKRRTIFELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPD 419
EVI RRT F LRKA E AHIL GL AL ID I +IR + T + A+ +++ + +
Sbjct: 368 EVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVEIARGGLMDLL-EIDE 426
Query: 420 VSKIIGFNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPL-QR-LTNMEQKKIIN 477
+ + + ++ + ++ +D + + EIL P+ QR + + E ++
Sbjct: 427 I-QANAILEMQLRRLAALERQKIVREHDELQAKITEYNEILASPVRQRGIVSEELTALVE 485
Query: 478 KY 479
KY
Sbjct: 486 KY 487
Score = 659 (237.0 bits), Expect = 5.2e-181, Sum P(2) = 5.2e-181
Identities = 142/409 (34%), Positives = 239/409 (58%)
Query: 447 DMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVIDLTDILSNSKRXXXXXXXX 506
D+ ++ +IQA IL+M L+RL +E++KI+ +++ + K+ + +IL++ R
Sbjct: 420 DLLEIDEIQANAILEMQLRRLAALERQKIVREHDELQAKITEYNEILASPVRQRGIVSEE 479
Query: 507 XXXXKNKYGSHKKNIRRSEIILNAINPSTEDLIASQDMVITLSNLGYIKSQPISEYRAQK 566
KYG +K +++I + S EDLIA +D+V+T++ GYIK +YRAQK
Sbjct: 480 LTALVEKYGDDRK----TKLIPYEGDMSIEDLIAEEDIVVTVTRGGYIKRTKTDDYRAQK 535
Query: 567 RGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKVWQIPQGSRNSRGKPIIN 626
RGG+G + K++D +N F++ TH ++L F+N GR+Y K +++P R++RG+ + N
Sbjct: 536 RGGKGVRGTKLKEDDIVNHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVAN 595
Query: 627 MFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFSNPRKSGIIAVNL- 685
+ + + E I I + RD+ Y+ ++T G+VKKT L ++ +PR G+IA+NL
Sbjct: 596 LLAFQPDETIAQIRAI----RDYEAVPYLVLATKAGLVKKTPLKDYDSPRSGGVIAINLR 651
Query: 686 ----SNEDFLIGAALTDGSYDIMLFSDSGKAVRF--NENSVRAMGRSARGVIGMRLEKKQ 739
++D LIGA L D++L S +++RF +++++R MGR+ GV GM +
Sbjct: 652 EQADGSDDELIGAELVSAEDDLLLISKKAQSIRFTASDDTLRPMGRATSGVKGMSFREGD 711
Query: 740 KVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLV 799
+++++ V V TAT+ GY KRT + EY RG GI + K + G +V A +V
Sbjct: 712 ELLSMNVVR-AGTFVFTATDGGYAKRTSVDEYRVQGRGGLGIKAAKIVEDRGSLVGALVV 770
Query: 800 NRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILITVENKSKLCGVQR 848
+ EI+ IT G +IRTRV+ +R+ GR T GV LI + + + G+ R
Sbjct: 771 EEHDEILAITLSGGVIRTRVNGVRETGRDTMGVQLINLGKRDAVVGIAR 819
>UNIPROTKB|Q07702 [details] [associations]
symbol:gyrA "DNA gyrase subunit A" species:1773
"Mycobacterium tuberculosis" [GO:0000287 "magnesium ion binding"
evidence=IDA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA]
[GO:0005618 "cell wall" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0006265 "DNA topological change" evidence=IDA] [GO:0046982
"protein heterodimerization activity" evidence=IPI] HAMAP:MF_01897
InterPro:IPR002205 InterPro:IPR005743 InterPro:IPR006691
InterPro:IPR013758 InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989
SMART:SM00434 GO:GO:0005886 GO:GO:0005524 GO:GO:0005737
GO:GO:0005618 GO:GO:0005694 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0000287 GO:GO:0046677 EMBL:BX842572
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 eggNOG:COG0188
HOGENOM:HOG000076278 KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 OMA:IAQEDVV TIGRFAMs:TIGR01063 ProtClustDB:PRK05560
EMBL:L27512 EMBL:L11919 EMBL:X72872 PIR:D70698 RefSeq:NP_214520.1
RefSeq:NP_334415.1 RefSeq:YP_006513318.1 PDB:3IFZ PDB:3ILW PDB:3UC1
PDBsum:3IFZ PDBsum:3ILW PDBsum:3UC1 ProteinModelPortal:Q07702
SMR:Q07702 EnsemblBacteria:EBMYCT00000001336
EnsemblBacteria:EBMYCT00000068956 GeneID:13315979 GeneID:887105
GeneID:922437 KEGG:mtc:MT0006 KEGG:mtu:Rv0006 KEGG:mtv:RVBD_0006
PATRIC:18121736 TubercuList:Rv0006 BindingDB:Q07702
ChEMBL:CHEMBL4165 EvolutionaryTrace:Q07702 Uniprot:Q07702
Length = 838
Score = 1111 (396.2 bits), Expect = 2.1e-179, Sum P(2) = 2.1e-179
Identities = 220/405 (54%), Positives = 290/405 (71%)
Query: 13 LEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGE 72
+E+EM +SY+DYAMSVIVGRALP+VRDGLKPVHRRVL+AM + +R K AR V E
Sbjct: 20 IEQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAE 79
Query: 73 TMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTECRLNKISN 132
TMG YHPHGD SIYD+LVRMAQ +SLR LVDGQGNFGS D AAMRYTE RL ++
Sbjct: 80 TMGNYHPHGDASIYDSLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEARLTPLAM 139
Query: 133 ELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVID 192
E+L ++D+ET+DFI NYDG+ +EP+VLP+R PNLL NGS GIAVGMATNIPPHNL E+ D
Sbjct: 140 EMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNIPPHNLRELAD 199
Query: 193 GVLYVLHNPECSINDLIKII----PAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRAKTHI 248
V + L N + + + + PDFPTAG+I G D Y TG+G + +R +
Sbjct: 200 AVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQGTADAYKTGRGSIRMRGVVEV 259
Query: 249 EEFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDES-DKSGMRIVIEL 307
EE +R RT+++I ELPYQVN + + I++ V++ KL ISN+ D+S D+ G+RIVIE+
Sbjct: 260 EEDSR-GRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRVGLRIVIEI 318
Query: 308 KRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVIKRRTI 367
KR+ + ++V+N LYK TQLQ +FG NMLA+V+G P+ L L +++ Y++ H+ +VI RRT
Sbjct: 319 KRDAVAKVVINNLYKHTQLQTSFGANMLAIVDGVPRTLRLDQLIRYYVDHQLDVIVRRTT 378
Query: 368 FELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIE 412
+ LRKA E AHIL GL AL +D I +IR++ T A+ +IE
Sbjct: 379 YRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARAGLIE 423
Score = 659 (237.0 bits), Expect = 2.1e-179, Sum P(2) = 2.1e-179
Identities = 141/404 (34%), Positives = 238/404 (58%)
Query: 447 DMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVIDLTDILSNSKRXXXXXXXX 506
++ + +IQAQ IL M L+RL +E+++II+ + ++ DL DIL+ +R
Sbjct: 423 ELLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDE 482
Query: 507 XXXXKNKYGSHKKNIRRSEIILNAINPSTEDLIASQDMVITLSNLGYIKSQPISEYRAQK 566
+++G RR+ II + S EDLIA +D+V+T++ GY K YR+QK
Sbjct: 483 LAEIVDRHGDD----RRTRIIAADGDVSDEDLIAREDVVVTITETGYAKRTKTDLYRSQK 538
Query: 567 RGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKVWQIPQGSRNSRGKPIIN 626
RGG+G + K +D + F+ +THD IL F+ GR+Y K + +P+ SR +RG+ + N
Sbjct: 539 RGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVAN 598
Query: 627 MFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFSNPRKSGIIAVNLS 686
+ + + +E+I ++ + D P Y+ ++T G+VKK+ L++F + R GI+AVNL
Sbjct: 599 LLAFQPEERIAQVIQI-RGYTDAP---YLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLR 654
Query: 687 NEDFLIGAALTDGSYDIMLFSDSGKAVRFN--ENSVRAMGRSARGVIGMRLEKKQKVIAL 744
+ D L+GA L D++L S +G+++RF+ + ++R MGR+ GV GMR ++++L
Sbjct: 655 DNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLVSL 714
Query: 745 LVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLVNRYHE 804
V + +L AT GY KRT I+EY RG KG++++ ++R G++V A +V+ E
Sbjct: 715 NVVR-EGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSE 773
Query: 805 IMLITTGGILIRTRVSEIRKMGRSTQGVILITVENKSKLCGVQR 848
+ +T+GG +IRT ++RK GR T+GV L+ + L + R
Sbjct: 774 LYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAIAR 817
Score = 39 (18.8 bits), Expect = 6.8e-114, Sum P(2) = 6.8e-114
Identities = 8/31 (25%), Positives = 19/31 (61%)
Query: 1513 NDKGSLVNGIIKSIDTNKG--AIIQLSNEVE 1541
N++ ++ G++K++D A+I+ S V+
Sbjct: 385 NERAHILRGLVKALDALDEVIALIRASETVD 415
>UNIPROTKB|Q89L52 [details] [associations]
symbol:gyrA "DNA gyrase subunit A" species:224911
"Bradyrhizobium japonicum USDA 110" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01897 InterPro:IPR002205 InterPro:IPR005743
InterPro:IPR006691 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989 SMART:SM00434
GO:GO:0005524 GO:GO:0005737 GO:GO:0005694 GO:GO:0007059
GO:GO:0006261 Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0009295
GO:GO:0006265 EMBL:BA000040 GenomeReviews:BA000040_GR
HOGENOM:HOG000076278 KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 OMA:IAQEDVV TIGRFAMs:TIGR01063 ProtClustDB:PRK05560
Gene3D:1.10.268.10 HSSP:P09097 RefSeq:NP_771336.2
ProteinModelPortal:Q89L52 GeneID:1052360 KEGG:bja:bll4696
PATRIC:21193036 BioCyc:BJAP224911:GJEJ-4729-MONOMER Uniprot:Q89L52
Length = 884
Score = 1716 (609.1 bits), Expect = 1.1e-176, P = 1.1e-176
Identities = 358/833 (42%), Positives = 537/833 (64%)
Query: 17 MCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGETMGK 76
M KSYLDYAMSVIV RALPD RDGLKPVHRR+L++M+E + ++ +VK ARVVG+ +GK
Sbjct: 1 MKKSYLDYAMSVIVARALPDARDGLKPVHRRILYSMNEQGHTPDKKYVKSARVVGDVIGK 60
Query: 77 YHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTECRLNKISNELLI 136
YHPHGD SIYDA+VRMAQ FS+R L+DGQGNFGS+DGD AA RYTE RL K + LL
Sbjct: 61 YHPHGDQSIYDAMVRMAQDFSMRVPLIDGQGNFGSVDGDPPAAYRYTEARLTKAALALLA 120
Query: 137 DLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGVLY 196
D+DK+T+DF NYD E EPSVLP + PNLL+NG+ GIAVGMATNIPPHNL EVID +
Sbjct: 121 DIDKDTVDFQPNYDNNETEPSVLPAKFPNLLVNGAGGIAVGMATNIPPHNLGEVIDACVA 180
Query: 197 VLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRAKTHIEEFNRENR 256
++ NP +I++LI I+P PDFPT G+I G + + Y+ G+G +++R K IE +E R
Sbjct: 181 LIDNPALTIDELINIVPGPDFPTGGVILGRAGIRAAYHLGRGSIVMRGKVAIETIRKE-R 239
Query: 257 TAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVIELKRNEIPEIV 316
A+II E+PYQVNK +++E+I++LVKEKK+E I +LRDESD+ G R+VIELKR+ + ++V
Sbjct: 240 EALIITEIPYQVNKATMVERIAELVKEKKIEGIGDLRDESDRDGYRVVIELKRDAVADVV 299
Query: 317 LNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVIKRRTIFELRKAREY 376
LN+LY+ T LQ +FG+NM+AL +G+P++++LK++L F+ R+ V+ RRT F L KAR+
Sbjct: 300 LNQLYRFTPLQTSFGVNMVALDSGRPRIMHLKDLLAIFVDFRERVVTRRTKFLLAKARDR 359
Query: 377 AHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIGFNKKNYNTISK 436
AHIL GL IA+ NID I++IR++ P A++ ++ W DV ++ + IS
Sbjct: 360 AHILVGLAIAVANIDEMIRVIRTSPDPTTARDTLMSRDWPARDVEDMLTLIDDPRHRISP 419
Query: 437 INNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVIDLTDILSNS 496
I +LS QA+ IL + LQRLT + + +I ++ + + ++ D DIL +
Sbjct: 420 DGTI---------RLSMEQARAILDLRLQRLTALGRDEIRDELDKLAGEIADYLDILRSR 470
Query: 497 KRXXXXXXXXXXXXKNKYGSHKKNIRRSEIILNAINPSTEDLIASQDMVITLSNLGYIKS 556
+R K ++ + RR+ I+ EDLI +DMV+T+S+ GY+K
Sbjct: 471 ERVLGIIKTELAEVKAEFATP----RRTVIMEQEGEVEDEDLIQREDMVVTVSHAGYVKR 526
Query: 557 QPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKVWQIPQGS 616
P+S YRAQ+RGG+G+ M T+DED++++LF+A+TH +L FS+ G++Y KVW++P +
Sbjct: 527 VPLSAYRAQRRGGKGRAGMQTRDEDFVSRLFVASTHTPVLFFSSRGQVYKEKVWRLPMAA 586
Query: 617 RNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFSNPR 676
N+RGK +IN+ L+ E+IT I+PL ++ + + +F +T G V++ LS+F + R
Sbjct: 587 PNARGKALINILPLEQGERITTIMPLPEDESTWGNLDVMFATTG-GNVRRNKLSDFVDVR 645
Query: 677 KSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAM-GRSARGVIGMRL 735
+SGIIA+ L + ++ + D++L G+ +RF VR GR++ GV G+ L
Sbjct: 646 RSGIIAMKLDENEAIVDVQICTERDDVLLTGAGGQCIRFPVTDVRVFTGRTSMGVRGIAL 705
Query: 736 EKKQKVIALLV------SNNQKQSVLTATENGYGKRTLIKEYTKHN-RGTKGIISIKTNK 788
+ KVI+L + +++++ + L G+ T + T G + +
Sbjct: 706 GEGDKVISLAILRHVETTSDERSAYLKMRRAVAGEATAEEPAADAEAEETSGSFQL-AQE 764
Query: 789 RNGKVVAATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILITVENKS 841
R ++ AA V ++ ++ G RT E R GR +G++ ++V N++
Sbjct: 765 RYVEMSAAEQV-----VLTVSVNGYGKRTSSYEYRTTGRGGKGIVAMSVNNRN 812
Score = 198 (74.8 bits), Expect = 1.9e-11, P = 1.9e-11
Identities = 45/99 (45%), Positives = 58/99 (58%)
Query: 751 KQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLVNRYHEIMLITT 810
+Q VLT + NGYGKRT EY RG KGI+++ N RNG +VA+ V +IML+T
Sbjct: 773 EQVVLTVSVNGYGKRTSSYEYRTTGRGGKGIVAMSVNNRNGNLVASFPVEDADQIMLVTD 832
Query: 811 GGILIRTRVSEIRKMGRSTQGVILITVENKSKLCGVQRL 849
G LIR V IR GRSTQGVI+ + V+ +
Sbjct: 833 KGQLIRCPVEGIRIAGRSTQGVIVFDTAEDEHVVSVEHI 871
>UNIPROTKB|Q9RT53 [details] [associations]
symbol:gyrA "DNA gyrase subunit A" species:243230
"Deinococcus radiodurans R1" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01897 InterPro:IPR002205 InterPro:IPR005743
InterPro:IPR006691 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989 SMART:SM00434
GO:GO:0005524 GO:GO:0005737 GO:GO:0005694 GO:GO:0007059
GO:GO:0006261 Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0009295
EMBL:AE000513 GenomeReviews:AE000513_GR GO:GO:0006265
HOGENOM:HOG000076278 KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 OMA:IAQEDVV TIGRFAMs:TIGR01063 ProtClustDB:PRK05560
Gene3D:1.10.268.10 HSSP:P09097 PIR:E75338 RefSeq:NP_295636.1
ProteinModelPortal:Q9RT53 GeneID:1798351 KEGG:dra:DR_1913
PATRIC:21631472 BioCyc:DRAD243230:GH46-2282-MONOMER Uniprot:Q9RT53
Length = 812
Score = 1055 (376.4 bits), Expect = 1.9e-172, Sum P(2) = 1.9e-172
Identities = 208/402 (51%), Positives = 295/402 (73%)
Query: 13 LEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGE 72
+ E+ ++++YAM+VIV RALPDVRDG+KPV RR+++AM + N K A VVGE
Sbjct: 9 ITSEVKTNFINYAMNVIVDRALPDVRDGMKPVQRRIMYAMLQEGLASNVKHAKSASVVGE 68
Query: 73 TMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTECRLNKISN 132
M +YHPHGD SIYDA+VR+ Q +++R TLVD QGNFGS+DGD AAAMRYTE R+ K++
Sbjct: 69 VMKRYHPHGDSSIYDAMVRLGQWWNMRYTLVDPQGNFGSMDGDMAAAMRYTEARMTKVAE 128
Query: 133 ELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVID 192
E+L DL+KET+D NYD EP+VLP+ +PNLLING+SGIAVGMATNIPPHNLTE+ +
Sbjct: 129 EILADLEKETVDLKPNYDETTTEPTVLPSAVPNLLINGASGIAVGMATNIPPHNLTEISN 188
Query: 193 GVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRAKTHIEEFN 252
G+L ++ NP ++++++ + PDFPT G I + + + Y TG + +R K IEE
Sbjct: 189 GLLALIDNPAITLDEMMTHVQGPDFPTGGRIAKVG-IREAYATGHAGLKVRGKARIEE-G 246
Query: 253 RENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESD-KSGMRIVIELKRNE 311
+ RT III E+PYQ+NK +LL+ IS + K K+ I LRDESD K +RIVIELKR+
Sbjct: 247 KNGRTQIIISEIPYQLNKTNLLQTISAMYKAGKIPDIGALRDESDRKEPVRIVIELKRSA 306
Query: 312 --IPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVIKRRTIFE 369
+ +VLN+LYK TQLQ+++ + L++VNG+P++L L + + YF+ HR++V+ RRT+++
Sbjct: 307 AGMGTLVLNQLYKYTQLQSSYTVMNLSIVNGEPRVLPLIDTMRYFLDHRRDVVTRRTVYD 366
Query: 370 LRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKII 411
LRKA+E AH+LEGL AL +ID I +IR+++T EA++ ++
Sbjct: 367 LRKAKERAHVLEGLLKALDHIDEVISLIRASNTGAEARDGLM 408
Score = 655 (235.6 bits), Expect = 1.9e-172, Sum P(2) = 1.9e-172
Identities = 143/398 (35%), Positives = 240/398 (60%)
Query: 449 YKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVIDLTDILSNSKRXXXXXXXXXX 508
+ LS+IQAQ IL M LQRL +E++K+ +Y+ + K + L IL + K
Sbjct: 411 FGLSEIQAQAILDMRLQRLVGLEREKLQGEYDELQKTITRLESILGDEKLLWREIKKEIR 470
Query: 509 XXKNKYGSHKKNIRRSEIILNAINPSTEDLIASQDMVITLSNLGYIKSQPISEYRAQKRG 568
+++YG + RRS I + + EDLIA +DMVIT++ GY+K ++ YR QKRG
Sbjct: 471 DIRDRYG----DARRSVITELEEDINKEDLIAVEDMVITMTRAGYVKRTNLTAYREQKRG 526
Query: 569 GRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKVWQIPQGSRNSRGKPIINMF 628
GRG ++ED +F+ +THDY+L F++ GR++ K++ +P+ R+++G I N+
Sbjct: 527 GRGSSGGKLREEDANTGVFVGSTHDYLLFFTDQGRVFHEKIYDLPEAGRDAKGTHIRNLL 586
Query: 629 -SLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFSNPRKSGIIAVNLSN 687
L++ E I +L +S D P +++F +T G++KK+L+++++N +G+IA+NL
Sbjct: 587 PGLRDDENIASVLSVSGF--DQP-GSFIF-ATKSGVIKKSLITDYANITSAGLIAINLQP 642
Query: 688 EDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAMGRSARGVIGMRLEKKQKVI--ALL 745
D LIG + D++L + +G+A+RF VR GR+ +GVIG+RL + +V+ AL+
Sbjct: 643 GDELIGVDIQQDGDDVVLATKNGQAMRFEATLVRDTGRATQGVIGIRLREGDEVVSMALV 702
Query: 746 VSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLVNRYHEI 805
N+++ +L +E G GKRT + +Y RG G+I++ + GK+V V E+
Sbjct: 703 PGNDEEGELLAISECGLGKRTKVSDYPSKGRGGLGVITLDVTDKTGKLVTLAHVAGNEEL 762
Query: 806 MLITTGGILIRTRVSEIRKMGRSTQGVILITVENKSKL 843
M++T G +IRTRV E+R GR+ QGV +I + +K ++
Sbjct: 763 MVLTEKGTVIRTRVEEVRVTGRNAQGVKVINIGDKDRV 800
Score = 102 (41.0 bits), Expect = 5.1e-114, Sum P(2) = 5.1e-114
Identities = 52/235 (22%), Positives = 101/235 (42%)
Query: 515 GSHKKNI----RRSEIILNAINPSTEDLIASQDMVITLSNLGYIKSQPISEYRAQKRGGR 570
G+H +N+ R E I + ++ S D S I + G IK I++Y G
Sbjct: 579 GTHIRNLLPGLRDDENIASVLSVSGFDQPGS---FIFATKSGVIKKSLITDYANITSAGL 635
Query: 571 GKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKVWQIPQGSRNSRGKPIINMFSL 630
+ DE I + D +L N G+ + + R ++G +I +
Sbjct: 636 IAINLQPGDE-LIGVDIQQDGDDVVLATKN-GQAMRFEATLVRDTGRATQG--VIGIRLR 691
Query: 631 KNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFSNPRKSGIIAVNLSNEDF 690
+ E +++ L N++ + + G+ K+T +S++ + + G+ + L D
Sbjct: 692 EGDEVVSMALVPGNDEE-----GELLAISECGLGKRTKVSDYPSKGRGGLGVITLDVTDK 746
Query: 691 ---LIGAALTDGSYDIMLFSDSGKAVRFNENSVRAMGRSARGVIGMRLEKKQKVI 742
L+ A G+ ++M+ ++ G +R VR GR+A+GV + + K +VI
Sbjct: 747 TGKLVTLAHVAGNEELMVLTEKGTVIRTRVEEVRVTGRNAQGVKVINIGDKDRVI 801
Score = 48 (22.0 bits), Expect = 2.6e-108, Sum P(2) = 2.6e-108
Identities = 12/55 (21%), Positives = 23/55 (41%)
Query: 539 IASQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHD 593
+A + ++ L+ G + + E R R +G K + D+D + F D
Sbjct: 756 VAGNEELMVLTEKGTVIRTRVEEVRVTGRNAQGVKVINIGDKDRVIDAFPIRKED 810
>TIGR_CMR|NSE_0958 [details] [associations]
symbol:NSE_0958 "DNA gyrase, A subunit" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003916 "DNA
topoisomerase activity" evidence=ISS] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=ISS]
InterPro:IPR002205 InterPro:IPR005743 InterPro:IPR006691
InterPro:IPR013758 InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989
SMART:SM00434 GO:GO:0005524 GO:GO:0005694 Gene3D:3.30.1360.40
InterPro:IPR024946 EMBL:CP000237 GenomeReviews:CP000237_GR
GO:GO:0006265 eggNOG:COG0188 HOGENOM:HOG000076278 KO:K02469
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 OMA:IAQEDVV
TIGRFAMs:TIGR01063 ProtClustDB:PRK05560 RefSeq:YP_506822.1
ProteinModelPortal:Q2GCH4 STRING:Q2GCH4 GeneID:3932182
KEGG:nse:NSE_0958 PATRIC:22681889
BioCyc:NSEN222891:GHFU-960-MONOMER Uniprot:Q2GCH4
Length = 869
Score = 1670 (592.9 bits), Expect = 8.0e-172, P = 8.0e-172
Identities = 375/862 (43%), Positives = 532/862 (61%)
Query: 8 VISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCA 67
+I + LE+E+ SYL YAMSVI+ RA+PDVRDGLKPVHRR+L++M+E++ WN+P+ K A
Sbjct: 4 IIPVNLEQELKSSYLSYAMSVIINRAIPDVRDGLKPVHRRILYSMNELSFYWNKPYRKSA 63
Query: 68 RVVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTECRL 127
RV+GE +GKYHPHGD +IYDALVRMAQ+FSL L+DGQGNFGSIDGD AAAMRYTE RL
Sbjct: 64 RVIGEVIGKYHPHGDSAIYDALVRMAQNFSLLVPLIDGQGNFGSIDGDPAAAMRYTEVRL 123
Query: 128 NKISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNL 187
IS LL DL + ++DF SNYD E EP VLP + PN+L+NG++G+AVGMATN+P HNL
Sbjct: 124 EYISKFLLDDLYENSVDFRSNYDNSETEPVVLPAKFPNILVNGTAGVAVGMATNVPTHNL 183
Query: 188 TEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRAKTH 247
+EVI+ L N + ++L+K+I PDFPT G+I G + + +G+G +IIR+KTH
Sbjct: 184 SEVIEACKLYLENNNVTTDELLKVIKGPDFPTGGLIIGEEGIKASFESGRGSIIIRSKTH 243
Query: 248 IEEFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVIEL 307
EE E AII+DELPYQVNK L+E I+ LVKEK+L+ IS+LRDES+K G+R+VIEL
Sbjct: 244 FEE--TEAGKAIIVDELPYQVNKAKLIENIALLVKEKRLDSISDLRDESNKEGIRVVIEL 301
Query: 308 KRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVIKRRTI 367
KR E+VLN+L++ TQLQ ++ NM+ L N +P L++L++IL FI HRKEVI RRT
Sbjct: 302 KRGASFEVVLNQLFQMTQLQTSYSTNMVLLDNMRPTLMSLRDILAAFIAHRKEVISRRTE 361
Query: 368 FELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIGFN 427
F L KARE A++L L +A+ NID + I++S+ + A + W + + +++
Sbjct: 362 FRLAKAREKANVLVALYVAILNIDEVVHILKSSGDNEAAIKALSAKHWAIDEELELL--- 418
Query: 428 KKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVI 487
+ I+NI KL N + YKLS Q++ IL+M +QR+TN E+ +++ + + V
Sbjct: 419 ------VETISNI-KLLNRE-YKLSTAQSKAILEMKMQRITNTEKGQLVAEIHAEMDIVK 470
Query: 488 DLTDILSNSKRXXXXXXXXXXXXKNKYGSHKKNIRRSEIILNAINPSTEDLIASQDMVIT 547
+ IL + K KY +K+I + NA+ + EDLI + +V+T
Sbjct: 471 ECASILGSEAVLTNVIVRELNEIKAKYPQARKSIILKNV--NAVY-AEEDLIEREQVVVT 527
Query: 548 LSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWL 607
+ GYIK IS YR Q+RGG+G+ A K ED + Q+F+ +THD IL FS+ G++Y L
Sbjct: 528 ATYSGYIKRVHISNYRVQRRGGKGRIAQNIKSEDQLAQIFVLSTHDEILFFSSRGKVYKL 587
Query: 608 KVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRD---F----PKNNYVFMSTS 660
K +++P G SRG+ ++N+F L + E IT ILPL ++ + F K MS
Sbjct: 588 KAYKLPIGEPQSRGRALVNIFDLADDESITSILPLKSSDAENLIFLTAQGKVKRNSMSDF 647
Query: 661 LGIVKKTLLSNFSNPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSV 720
+ ++ N + I NED + + DG L D + V
Sbjct: 648 AYVPANGKVAIRLNDNDALISVKTAQNEDCVF-ISTRDGKCIRFLVGDLRVLKSRSSEGV 706
Query: 721 RA--MGRSARGVIGMRLEK------------KQKVIALLVS--NNQKQSVLTATENGYGK 764
+A +G+ + L K K K + + N+++Q VLT TENGYGK
Sbjct: 707 KAITLGKDDNAISLSILNKQVLSPEDKAEYMKTKFFERIQNPENHEEQFVLTVTENGYGK 766
Query: 765 RTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVSEIRK 824
T EY NRG GII+I T++RNGKVV++ V + IML+T G +IR + I
Sbjct: 767 ITSSYEYRITNRGGVGIINISTSERNGKVVSSFKVTLSNHIMLVTNRGQVIRIEANNIPV 826
Query: 825 MGRSTQGVILITVENKSKLCGV 846
+GR+TQGV L ++ + ++ V
Sbjct: 827 LGRNTQGVRLFSIRAEERVASV 848
>UNIPROTKB|P0AG67 [details] [associations]
symbol:rpsA "30S ribosomal subunit protein S1"
species:83333 "Escherichia coli K-12" [GO:2000766 "negative
regulation of cytoplasmic translation" evidence=IEP;IDA]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0016020 "membrane"
evidence=IDA] [GO:0022627 "cytosolic small ribosomal subunit"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0006412
"translation" evidence=IMP] [GO:0003735 "structural constituent of
ribosome" evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0016020
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006412 GO:GO:0003729 GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 PDB:2BH8 PDBsum:2BH8 GO:GO:0022627
GO:GO:2000766 EMBL:X04864 EMBL:X00785 EMBL:V00352 eggNOG:COG0539
HOGENOM:HOG000044052 KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299
TIGRFAMs:TIGR00717 EMBL:V00342 PIR:F64830 RefSeq:NP_415431.1
RefSeq:YP_489183.1 PDB:2KHI PDB:2KHJ PDBsum:2KHI PDBsum:2KHJ
ProteinModelPortal:P0AG67 SMR:P0AG67 DIP:DIP-35884N IntAct:P0AG67
MINT:MINT-1315122 PhosSite:P010447 SWISS-2DPAGE:P0AG67 PaxDb:P0AG67
PRIDE:P0AG67 EnsemblBacteria:EBESCT00000004097
EnsemblBacteria:EBESCT00000004098 EnsemblBacteria:EBESCT00000004099
EnsemblBacteria:EBESCT00000017224 GeneID:12934066 GeneID:945536
KEGG:ecj:Y75_p0883 KEGG:eco:b0911 PATRIC:32117035 EchoBASE:EB0893
EcoGene:EG10900 BioCyc:EcoCyc:EG10900-MONOMER
BioCyc:ECOL316407:JW0894-MONOMER EvolutionaryTrace:P0AG67
Genevestigator:P0AG67 Uniprot:P0AG67
Length = 557
Score = 1638 (581.7 bits), Expect = 2.0e-168, P = 2.0e-168
Identities = 301/543 (55%), Positives = 404/543 (74%)
Query: 1068 DCFATLFKESLLRHDMRSGEVISAEVIGLDRNFVIINADLKSEAFIPIEEFKNDNGELEV 1127
+ FA LF+ESL + R G ++ V+ +D++ V+++A LKSE+ IP E+FKN GELE+
Sbjct: 3 ESFAQLFEESLKEIETRPGSIVRGVVVAIDKDVVLVDAGLKSESAIPAEQFKNAQGELEI 62
Query: 1128 KIGDFVSVAIESLENGFGDTILSRDKAKRLASWLSLEKAMESGEIITGTINGKVKGGLTV 1187
++GD V VA++++E+GFG+T+LSR+KAKR +W++LEKA E E +TG INGKVKGG TV
Sbjct: 63 QVGDEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGFTV 122
Query: 1188 LTNGLKAFLPGSLVDIRPVKDTTPFEGKTMDFKVIKLDRKRNNVVLSHRAVIEESMGEER 1247
NG++AFLPGSLVD+RPV+DT EGK ++FKVIKLD+KRNNVV+S RAVIE ER
Sbjct: 123 ELNGIRAFLPGSLVDVRPVRDTLHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAER 182
Query: 1248 QKLIETLKEGCTVKGVVKNITDYGAFIDLGGIDGLLHITDIAWRRVKHPSEILTIGQDIS 1307
+L+E L+EG VKG+VKN+TDYGAF+DLGG+DGLLHITD+AW+RVKHPSEI+ +G +I+
Sbjct: 183 DQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEIT 242
Query: 1308 TKILKYDQEKNRVSLGMKQLGIDPWIGLSFRYPRGTRLLGKVTNLTDYGAFVEIEKGIEG 1367
K+LK+D+E+ RVSLG+KQLG DPW+ ++ RYP GT+L G+VTNLTDYG FVEIE+G+EG
Sbjct: 243 VKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEG 302
Query: 1368 LVHISEMDWINKNVTPSKIVQLNDTVEIMILEINEERRRISLGMKQCKDNPWENFXXXXX 1427
LVH+SEMDW NKN+ PSK+V + D VE+M+L+I+EERRRISLG+KQCK NPW+ F
Sbjct: 303 LVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKANPWQQFAETHN 362
Query: 1428 XXXXXXXXXXXXTDFGIFIGLDGNIDGLIHLSDLSWTDPGEEIIRNFKKGDEIEAIILSI 1487
TDFGIFIGLDG IDGL+HLSD+SW GEE +R +KKGDEI A++L +
Sbjct: 363 KGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQV 422
Query: 1488 DVEKERISLGIKQLEGDPFNNYVNINDKGSLVNGIIKSIDTNKGAIIQLSNEVEGYLRIS 1547
D E+ERISLG+KQL DPFNN+V +N KG++V G + ++D KGA ++L++ VEGYLR S
Sbjct: 423 DAERERISLGVKQLAEDPFNNWVALNKKGAIVTGKVTAVDA-KGATVELADGVEGYLRAS 481
Query: 1548 E--EDNKHEKKL--KIGENIDVLTVLIDHKTRYIQLSFXXXXXXXXXXLLTSINANTISG 1603
E D + L +G+ ++ +D K R I LS + ++N +
Sbjct: 482 EASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSVRAKDEADEKDAIATVNKQEDAN 541
Query: 1604 TTN 1606
+N
Sbjct: 542 FSN 544
>TIGR_CMR|ECH_0858 [details] [associations]
symbol:ECH_0858 "DNA gyrase, A subunit" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003916 "DNA
topoisomerase activity" evidence=ISS] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=ISS]
HAMAP:MF_01897 InterPro:IPR002205 InterPro:IPR005743
InterPro:IPR006691 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 Pfam:PF03989 SMART:SM00434 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006261
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 eggNOG:COG0188
HOGENOM:HOG000076278 KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 OMA:IAQEDVV TIGRFAMs:TIGR01063 ProtClustDB:PRK05560
RefSeq:YP_507653.1 ProteinModelPortal:Q2GFY0 STRING:Q2GFY0
GeneID:3927477 KEGG:ech:ECH_0858 PATRIC:20577126
BioCyc:ECHA205920:GJNR-861-MONOMER Uniprot:Q2GFY0
Length = 898
Score = 1620 (575.3 bits), Expect = 1.6e-166, P = 1.6e-166
Identities = 355/841 (42%), Positives = 516/841 (61%)
Query: 8 VISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCA 67
VI + +E+E+ SYL YAMSVIV RA+PD+RDGLKPVHRR+L++M++ + +P+ K A
Sbjct: 7 VIPVSIEQELEDSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDYGKPYKKAA 66
Query: 68 RVVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTECRL 127
RVVG+ MGKYHPH D +IYD+LVRMAQ FSL L+D QGNFGSIDGD A+MRYTE RL
Sbjct: 67 RVVGDVMGKYHPHADAAIYDSLVRMAQDFSLLLPLIDSQGNFGSIDGDPPASMRYTEARL 126
Query: 128 NKISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNL 187
K ++ LL D+D++T+DF NYD E EP VLP PN+L+NG+ G+AVGM+TNIP HNL
Sbjct: 127 AKAAHFLLNDIDEDTVDFRPNYDENEVEPVVLPAEFPNILVNGAGGVAVGMSTNIPSHNL 186
Query: 188 TEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRAKTH 247
EVID + + NPE + ++LI I+ PDFPT G I G + + + TGKG +II+ KTH
Sbjct: 187 GEVIDACIAYIDNPEITFDELINIVRGPDFPTGGTILGDAGIRSAFMTGKGTIIIQGKTH 246
Query: 248 IEEFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVIEL 307
+E+ + AIIIDE+PYQVNK L+E+I +L+KEKK+E I +LRDES+K G+R+ IEL
Sbjct: 247 LEDLP-SGKQAIIIDEIPYQVNKAKLIERIHELIKEKKIEGILDLRDESNKMGIRVAIEL 305
Query: 308 KRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVIKRRTI 367
K+ +++LN++ T L+ +F +N L L N +PK+++L +I+ F+ +RKEV+ RRT
Sbjct: 306 KKQVSHQVILNQILGLTPLRTSFSINTLVLDNNKPKVMSLPDIISTFVEYRKEVLTRRTQ 365
Query: 368 FELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWN-LPDVSKIIGF 426
F LRK RE AH+ G+ IA+ NID I IIRS+ EA +++E W+ L V ++I
Sbjct: 366 FRLRKVRERAHLYIGMYIAVLNIDKVIAIIRSSRDTAEATKRLLECKWDALTSVREMIEL 425
Query: 427 NKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKV 486
+ + + I+N+ +L + +Q + IL+M LQRLTN+E++K+ ++++ +
Sbjct: 426 VADSKSIV--IDNVCQL--------TGVQVKSILEMKLQRLTNLEKEKLELDLKSMVSMI 475
Query: 487 IDLTDILSNSKRXXXXXXXXXXXXKNKYGSHKKNIRRSEIILNAINPSTEDLIASQDMVI 546
T++L N + K K RR+ I + EDLI +DMV+
Sbjct: 476 KQYTELLKNKESLLQLIKDGFKEIKAKLAVP----RRTTIDYSHFETDIEDLIPKEDMVV 531
Query: 547 TLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYW 606
T++ GYIK +S YRAQKRGG+G+ K+ED I LF+ NTH +L FSN GR+Y
Sbjct: 532 TVTMSGYIKRAKLSNYRAQKRGGKGRIGQAIKEEDVITNLFVVNTHTSVLFFSNIGRVYK 591
Query: 607 LKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKK 666
LKV+++P G SRG+ ++N+F L E IT ++PL +N D N VF +T+ G +++
Sbjct: 592 LKVYKLPLGEPTSRGRSLVNIFPLSENESITSVMPLPDNVEDAEILNIVF-ATASGNLRR 650
Query: 667 TLLSNFSNPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAM-GR 725
LS+F +G IA+ L D LI + ++L + GK++RF+ ++VR GR
Sbjct: 651 NALSDFQYVPSNGKIAMVLDTGDTLISVKVCKEEDHVLLSTRLGKSIRFSVSNVRQFKGR 710
Query: 726 SARGVIGMRLEKKQKVIALLVS-----NNQKQSVLTATENGYGKRTLIKEYTKHNRGTKG 780
+ GV ++L VI++ V +++K+ + KR +KE N G G
Sbjct: 711 MSDGVRAIKLSSDDNVISMSVLLAMDIDSEKKDLYLKVP--LDKRMCVKEEGVVN-G--G 765
Query: 781 IISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGV--ILITVE 838
I I + + + T+V I+ +T G RT E R R GV IL T
Sbjct: 766 IAKILCDLGLEQDIFVTMVQNEQFILTVTENGFGKRTSAYEYRTTLRGGVGVVNILTTAR 825
Query: 839 N 839
N
Sbjct: 826 N 826
Score = 258 (95.9 bits), Expect = 6.8e-18, P = 6.8e-18
Identities = 82/246 (33%), Positives = 124/246 (50%)
Query: 616 SRNSRGKPIINMFSLKNKEKITVILPLSN---NKRDFPKNNYVFMSTSLGIVKKTLLSN- 671
S N R + + + + KI ++L + + + + ++V +ST LG + +SN
Sbjct: 645 SGNLRRNALSDFQYVPSNGKIAMVLDTGDTLISVKVCKEEDHVLLSTRLGKSIRFSVSNV 704
Query: 672 --FSNPRKSGIIAVNLSNEDFLIGAALT-----DGSY-DIMLFSDSGKAVRFNENSVRAM 723
F G+ A+ LS++D +I ++ D D+ L K + E V
Sbjct: 705 RQFKGRMSDGVRAIKLSSDDNVISMSVLLAMDIDSEKKDLYLKVPLDKRMCVKEEGV-VN 763
Query: 724 GRSARGVIGMRLEKKQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIIS 783
G A+ + + LE Q + +V N +Q +LT TENG+GKRT EY RG G+++
Sbjct: 764 GGIAKILCDLGLE--QDIFVTMVQN--EQFILTVTENGFGKRTSAYEYRTTLRGGVGVVN 819
Query: 784 IKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILITVENKSKL 843
I T RNG VVA+ V IMLIT G LIR VS+IR +GRSTQGV L E + K+
Sbjct: 820 ILTTARNGNVVASFPVESNDHIMLITDKGKLIRIAVSDIRIIGRSTQGVTLFKTEKREKV 879
Query: 844 CGVQRL 849
V ++
Sbjct: 880 VSVAKI 885
>UNIPROTKB|Q9KQT3 [details] [associations]
symbol:VC_1915 "30S ribosomal protein S1" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR000110 InterPro:IPR003029
Pfam:PF00575 PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126
GO:GO:0006412 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723
GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 HSSP:P05055
KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299 TIGRFAMs:TIGR00717
PIR:B82141 RefSeq:NP_231549.1 ProteinModelPortal:Q9KQT3 SMR:Q9KQT3
DNASU:2613544 GeneID:2613544 KEGG:vch:VC1915 PATRIC:20082874
Uniprot:Q9KQT3
Length = 556
Score = 1606 (570.4 bits), Expect = 4.8e-165, P = 4.8e-165
Identities = 296/534 (55%), Positives = 395/534 (73%)
Query: 1068 DCFATLFKESLLRHDMRSGEVISAEVIGLDRNFVIINADLKSEAFIPIEEFKNDNGELEV 1127
+ FA LF+E L + G ++ V+ ++ +V+++A LKSE+ IP E+FKN GELEV
Sbjct: 3 ESFAQLFEEFLNETQFQQGTIVKGTVVAIENGYVLVDAGLKSESAIPAEQFKNAAGELEV 62
Query: 1128 KIGDFVSVAIESLENGFGDTILSRDKAKRLASWLSLEKAMESGEIITGTINGKVKGGLTV 1187
++G V VA++++E+GFG+T LSR+KAKR +W+ LEKA E + G INGKVKGG TV
Sbjct: 63 QVGSQVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAATVIGIINGKVKGGFTV 122
Query: 1188 LTNGLKAFLPGSLVDIRPVKDTTPFEGKTMDFKVIKLDRKRNNVVLSHRAVIEESMGEER 1247
NG++AFLPGSLVD+RP++DT E K ++FKVIKLD+KRNNVV+S RAVIE ER
Sbjct: 123 ELNGIRAFLPGSLVDVRPIRDTAHLENKELEFKVIKLDQKRNNVVVSRRAVIESESSVER 182
Query: 1248 QKLIETLKEGCTVKGVVKNITDYGAFIDLGGIDGLLHITDIAWRRVKHPSEILTIGQDIS 1307
+L+ETL+EG VKG+VKN+TDYGAF+DLGG+DGLLHITD+AW+RVKHPSEI+ +G +I
Sbjct: 183 DELLETLQEGTEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEIL 242
Query: 1308 TKILKYDQEKNRVSLGMKQLGIDPWIGLSFRYPRGTRLLGKVTNLTDYGAFVEIEKGIEG 1367
K+LK+D+++ RVSLG+KQLG DPW+ ++ RYP G +L G+VTNLTDYG FVEIE+G+EG
Sbjct: 243 VKVLKFDRDRTRVSLGLKQLGEDPWVAIAKRYPEGHKLSGRVTNLTDYGCFVEIEEGVEG 302
Query: 1368 LVHISEMDWINKNVTPSKIVQLNDTVEIMILEINEERRRISLGMKQCKDNPWENFXXXXX 1427
LVH+SEMDW NKN+ PSK+V + D VE+M+L+I+EERRRISLG+KQCK NPW++F
Sbjct: 303 LVHVSEMDWTNKNIHPSKVVNVGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEAQA 362
Query: 1428 XXXXXXXXXXXXTDFGIFIGLDGNIDGLIHLSDLSWTDPGEEIIRNFKKGDEIEAIILSI 1487
TDFGIFIGL+G IDGL+HLSD+SW PGEE +R FKKGDEI A++L++
Sbjct: 363 KGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWNVPGEEAVREFKKGDEISAVVLAV 422
Query: 1488 DVEKERISLGIKQLEGDPFNNYVNINDKGSLVNGIIKSIDTNKGAIIQLSNEVEGYLRIS 1547
D E+ERISLGIKQ+E DPFN YV+ N KG+LVNG + ++D KGA I+L + VEGY+R S
Sbjct: 423 DAERERISLGIKQMENDPFNAYVSDNKKGALVNGTVTAVDA-KGATIELEDGVEGYIRAS 481
Query: 1548 E--EDNKHEKKL--KIGENIDVLTVLIDHKTRYIQLSFXXXXXXXXXXLLTSIN 1597
E D + L +G+ ++ +D K R I LS ++ ++N
Sbjct: 482 EVSRDRIEDASLILNVGDKVEAKFTGVDRKNRVINLSIKAKDEAEEQEVMATLN 535
>TIGR_CMR|VC_1915 [details] [associations]
symbol:VC_1915 "ribosomal protein S1" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0005840
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 KO:K02945 OMA:QLGQDPW
ProtClustDB:PRK06299 TIGRFAMs:TIGR00717 PIR:B82141
RefSeq:NP_231549.1 ProteinModelPortal:Q9KQT3 SMR:Q9KQT3
DNASU:2613544 GeneID:2613544 KEGG:vch:VC1915 PATRIC:20082874
Uniprot:Q9KQT3
Length = 556
Score = 1606 (570.4 bits), Expect = 4.8e-165, P = 4.8e-165
Identities = 296/534 (55%), Positives = 395/534 (73%)
Query: 1068 DCFATLFKESLLRHDMRSGEVISAEVIGLDRNFVIINADLKSEAFIPIEEFKNDNGELEV 1127
+ FA LF+E L + G ++ V+ ++ +V+++A LKSE+ IP E+FKN GELEV
Sbjct: 3 ESFAQLFEEFLNETQFQQGTIVKGTVVAIENGYVLVDAGLKSESAIPAEQFKNAAGELEV 62
Query: 1128 KIGDFVSVAIESLENGFGDTILSRDKAKRLASWLSLEKAMESGEIITGTINGKVKGGLTV 1187
++G V VA++++E+GFG+T LSR+KAKR +W+ LEKA E + G INGKVKGG TV
Sbjct: 63 QVGSQVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAATVIGIINGKVKGGFTV 122
Query: 1188 LTNGLKAFLPGSLVDIRPVKDTTPFEGKTMDFKVIKLDRKRNNVVLSHRAVIEESMGEER 1247
NG++AFLPGSLVD+RP++DT E K ++FKVIKLD+KRNNVV+S RAVIE ER
Sbjct: 123 ELNGIRAFLPGSLVDVRPIRDTAHLENKELEFKVIKLDQKRNNVVVSRRAVIESESSVER 182
Query: 1248 QKLIETLKEGCTVKGVVKNITDYGAFIDLGGIDGLLHITDIAWRRVKHPSEILTIGQDIS 1307
+L+ETL+EG VKG+VKN+TDYGAF+DLGG+DGLLHITD+AW+RVKHPSEI+ +G +I
Sbjct: 183 DELLETLQEGTEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEIL 242
Query: 1308 TKILKYDQEKNRVSLGMKQLGIDPWIGLSFRYPRGTRLLGKVTNLTDYGAFVEIEKGIEG 1367
K+LK+D+++ RVSLG+KQLG DPW+ ++ RYP G +L G+VTNLTDYG FVEIE+G+EG
Sbjct: 243 VKVLKFDRDRTRVSLGLKQLGEDPWVAIAKRYPEGHKLSGRVTNLTDYGCFVEIEEGVEG 302
Query: 1368 LVHISEMDWINKNVTPSKIVQLNDTVEIMILEINEERRRISLGMKQCKDNPWENFXXXXX 1427
LVH+SEMDW NKN+ PSK+V + D VE+M+L+I+EERRRISLG+KQCK NPW++F
Sbjct: 303 LVHVSEMDWTNKNIHPSKVVNVGDEVEVMVLDIDEERRRISLGLKQCKANPWQSFAEAQA 362
Query: 1428 XXXXXXXXXXXXTDFGIFIGLDGNIDGLIHLSDLSWTDPGEEIIRNFKKGDEIEAIILSI 1487
TDFGIFIGL+G IDGL+HLSD+SW PGEE +R FKKGDEI A++L++
Sbjct: 363 KGDKVTGKIKSITDFGIFIGLEGGIDGLVHLSDISWNVPGEEAVREFKKGDEISAVVLAV 422
Query: 1488 DVEKERISLGIKQLEGDPFNNYVNINDKGSLVNGIIKSIDTNKGAIIQLSNEVEGYLRIS 1547
D E+ERISLGIKQ+E DPFN YV+ N KG+LVNG + ++D KGA I+L + VEGY+R S
Sbjct: 423 DAERERISLGIKQMENDPFNAYVSDNKKGALVNGTVTAVDA-KGATIELEDGVEGYIRAS 481
Query: 1548 E--EDNKHEKKL--KIGENIDVLTVLIDHKTRYIQLSFXXXXXXXXXXLLTSIN 1597
E D + L +G+ ++ +D K R I LS ++ ++N
Sbjct: 482 EVSRDRIEDASLILNVGDKVEAKFTGVDRKNRVINLSIKAKDEAEEQEVMATLN 535
>TIGR_CMR|SO_2402 [details] [associations]
symbol:SO_2402 "ribosomal protein S1" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 HOGENOM:HOG000044052
KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299 TIGRFAMs:TIGR00717
RefSeq:NP_717992.1 ProteinModelPortal:Q8EEI0 SMR:Q8EEI0
GeneID:1170119 KEGG:son:SO_2402 PATRIC:23524423 Uniprot:Q8EEI0
Length = 555
Score = 1569 (557.4 bits), Expect = 4.0e-161, P = 4.0e-161
Identities = 289/534 (54%), Positives = 391/534 (73%)
Query: 1068 DCFATLFKESLLRHDMRSGEVISAEVIGLDRNFVIINADLKSEAFIPIEEFKNDNGELEV 1127
+ FA LF++SL + R G ++ V+ ++ V+++A LKSE+ IP E+FKN G LE+
Sbjct: 3 ESFADLFEQSLQTLEFRPGSIVRGTVVAIENGMVLVDAGLKSESPIPAEQFKNAQGVLEI 62
Query: 1128 KIGDFVSVAIESLENGFGDTILSRDKAKRLASWLSLEKAMESGEIITGTINGKVKGGLTV 1187
+GD V VA++S+E+GFG+T LSR+KAKR +W+ LEKA E E + G INGKVKGG TV
Sbjct: 63 AVGDEVDVALDSVEDGFGETQLSREKAKRHEAWIVLEKAYEDAETVIGIINGKVKGGFTV 122
Query: 1188 LTNGLKAFLPGSLVDIRPVKDTTPFEGKTMDFKVIKLDRKRNNVVLSHRAVIEESMGEER 1247
NG++AFLPGSLVD+RPV+DT E K ++FKVIKLD+KRNNVV+S RAVIE ER
Sbjct: 123 ELNGIRAFLPGSLVDVRPVRDTAHLEYKELEFKVIKLDQKRNNVVVSRRAVIESESSAER 182
Query: 1248 QKLIETLKEGCTVKGVVKNITDYGAFIDLGGIDGLLHITDIAWRRVKHPSEILTIGQDIS 1307
L+E L+EG VKG+VKN+TDYGAF+DLGG+DGLLHITD+AW+RVKHPSEI+ +G +I+
Sbjct: 183 DALLENLQEGQAVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEIN 242
Query: 1308 TKILKYDQEKNRVSLGMKQLGIDPWIGLSFRYPRGTRLLGKVTNLTDYGAFVEIEKGIEG 1367
K+LKYD+E+ RVSLG+KQLG DPW+ +S RYP T+L G+VTNLTDYG FVEIE+G+EG
Sbjct: 243 VKVLKYDRERTRVSLGLKQLGEDPWLEISKRYPENTKLTGRVTNLTDYGCFVEIEEGVEG 302
Query: 1368 LVHISEMDWINKNVTPSKIVQLNDTVEIMILEINEERRRISLGMKQCKDNPWENFXXXXX 1427
LVH+SEMDW NKN+ PSK+V L D VE+++L+I+EERRRISLG+KQCK NPW++F
Sbjct: 303 LVHVSEMDWTNKNIHPSKVVNLGDEVEVLVLDIDEERRRISLGLKQCKTNPWDDFATRYN 362
Query: 1428 XXXXXXXXXXXXTDFGIFIGLDGNIDGLIHLSDLSWTDPGEEIIRNFKKGDEIEAIILSI 1487
TDFGIFIGLDG IDGL+HLSD+SW GE+ + +KKGDEI A++LS+
Sbjct: 363 KGDKVSGKIKSITDFGIFIGLDGGIDGLVHLSDISWNGTGEDAVSEYKKGDEIHAVVLSV 422
Query: 1488 DVEKERISLGIKQLEGDPFNNYVNINDKGSLVNGIIKSIDTNKGAIIQLSNEVEGYLRIS 1547
D E+ERISLG+KQ E DPFN Y+ KG++V+G + ++D KG ++L++ VEGY+R++
Sbjct: 423 DPERERISLGVKQTEDDPFNAYLADKKKGTIVHGTVSAVDA-KGVTVELADTVEGYIRVA 481
Query: 1548 EEDNKHEKKLK----IGENIDVLTVLIDHKTRYIQLSFXXXXXXXXXXLLTSIN 1597
+ + + +G+ I+ + +D K R I LS ++ ++N
Sbjct: 482 DISRERIEDASTVYSVGDAIEAKFMGVDRKNRSISLSIKAKDEAEEKEVMATLN 535
>TIGR_CMR|CPS_2335 [details] [associations]
symbol:CPS_2335 "ribosomal protein S1" species:167879
"Colwellia psychrerythraea 34H" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539
HOGENOM:HOG000044052 KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299
TIGRFAMs:TIGR00717 RefSeq:YP_269055.1 ProteinModelPortal:Q482G3
SMR:Q482G3 STRING:Q482G3 GeneID:3519189 KEGG:cps:CPS_2335
PATRIC:21467761 BioCyc:CPSY167879:GI48-2400-MONOMER Uniprot:Q482G3
Length = 553
Score = 1568 (557.0 bits), Expect = 5.1e-161, P = 5.1e-161
Identities = 299/547 (54%), Positives = 396/547 (72%)
Query: 1070 FATLFKESLLRHDMRSGEVISAEVIGLDRNFVIINADLKSEAFIPIEEFKNDNGELEVKI 1129
FA LF+ESL + R G +I ++ ++++ VI++A LKSE+ I I++FKN GE+EV +
Sbjct: 5 FAQLFEESLKEIETRPGSIIRGTIVAVNKDNVIVDAGLKSESVISIDQFKNAAGEVEVVV 64
Query: 1130 GDFVSVAIESLENGFGDTILSRDKAKRLASWLSLEKAMESGEIITGTINGKVKGGLTVLT 1189
GD + VA+++ ++GFG+TILSR+KAKR +W LEKA E E + G INGKVKGG TV
Sbjct: 65 GDEIDVALDATDDGFGETILSREKAKRHEAWQVLEKAYEEKETVIGVINGKVKGGFTVEV 124
Query: 1190 NGLKAFLPGSLVDIRPVKDTTPFEGKTMDFKVIKLDRKRNNVVLSHRAVIEESMGEERQK 1249
+ ++AFLPGSLVD+RPV+DT EGK ++FKVIKLD+KRNNVV+S RAVIE ER +
Sbjct: 125 SDIRAFLPGSLVDVRPVRDTAHLEGKPLEFKVIKLDQKRNNVVVSRRAVIEAEGSAERDE 184
Query: 1250 LIETLKEGCTVKGVVKNITDYGAFIDLGGIDGLLHITDIAWRRVKHPSEILTIGQDISTK 1309
L+E+L EG VKG+VKN+TDYGAF+DLGGIDGLLHITD+AW+RVKHPSEI+ +G +I K
Sbjct: 185 LLESLAEGQEVKGIVKNLTDYGAFVDLGGIDGLLHITDMAWKRVKHPSEIVNVGDEIQVK 244
Query: 1310 ILKYDQEKNRVSLGMKQLGIDPWIGLSFRYPRGTRLLGKVTNLTDYGAFVEIEKGIEGLV 1369
+LK+D+E+ RVSLGMKQLG DPW+ ++ RYP G++L G+VTNLTDYG FVEI++G+EGLV
Sbjct: 245 VLKFDRERTRVSLGMKQLGEDPWVAIANRYPEGSKLSGRVTNLTDYGCFVEIQEGVEGLV 304
Query: 1370 HISEMDWINKNVTPSKIVQLNDTVEIMILEINEERRRISLGMKQCKDNPWENFXXXXXXX 1429
H+SEMDW NKN+ PSK+V L DTVE+++LEI+EERRRISLG+KQC NPWE F
Sbjct: 305 HVSEMDWTNKNIHPSKVVNLGDTVEVLVLEIDEERRRISLGLKQCIANPWEEFAKNFNKG 364
Query: 1430 XXXXXXXXXXTDFGIFIGLDGNIDGLIHLSDLSWTDPGEEIIRNFKKGDEIEAIILSIDV 1489
TDFGIFIGLDG IDGL+HLSD+SW GEE +R++KKGDEI+AI+L +D
Sbjct: 365 DKVSGKIKSITDFGIFIGLDGGIDGLVHLSDISWAG-GEEAVRDYKKGDEIDAIVLQVDP 423
Query: 1490 EKERISLGIKQLEGDPFNNYVNINDKGSLVNGIIKSIDTNKGAIIQLSNEVEGYLRIS-- 1547
E+ERISLG+KQ E DPFN Y+ KG++V G + +D KGA I L+ VEGYLR+S
Sbjct: 424 ERERISLGVKQAEDDPFNMYLADKKKGAIVTGKVTEVDA-KGATILLAESVEGYLRVSDI 482
Query: 1548 --EEDNKHEKKLKIGENIDVLTVLIDHKTRYIQLSFXXXXXXXXXXLLTSINANTISGTT 1605
E LK+G++++ + +D K R I LS + ++N +G +
Sbjct: 483 SVERIEDASTVLKVGDDVEARFMGVDRKNRTISLSIKAKDQADEREAMDNLNQVEETGLS 542
Query: 1606 NLGLILK 1612
+ K
Sbjct: 543 AMAAAFK 549
>TIGR_CMR|APH_0899 [details] [associations]
symbol:APH_0899 "DNA gyrase, A subunit" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003916 "DNA topoisomerase
activity" evidence=ISS] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01897
InterPro:IPR002205 InterPro:IPR005743 InterPro:IPR006691
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 Pfam:PF03989 SMART:SM00434 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 GO:GO:0006261 EMBL:CP000235 GenomeReviews:CP000235_GR
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 eggNOG:COG0188
HOGENOM:HOG000076278 KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 OMA:IAQEDVV TIGRFAMs:TIGR01063 ProtClustDB:PRK05560
Gene3D:1.10.268.10 RefSeq:YP_505474.1 ProteinModelPortal:Q2GJH7
STRING:Q2GJH7 GeneID:3931204 KEGG:aph:APH_0899 PATRIC:20950506
BioCyc:APHA212042:GHPM-912-MONOMER Uniprot:Q2GJH7
Length = 906
Score = 1544 (548.6 bits), Expect = 1.8e-158, P = 1.8e-158
Identities = 340/841 (40%), Positives = 515/841 (61%)
Query: 8 VISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCA 67
V+ + +E+E+ SYL YAMSVIV RA+PDVRDGLKPVHRR+L++M++ ++P+ K A
Sbjct: 5 VLPVSIEKELEDSYLSYAMSVIVSRAIPDVRDGLKPVHRRILYSMYKSGYDHDKPYKKAA 64
Query: 68 RVVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTECRL 127
RVVG+ MG+YHPH D +IYDALVRMAQ FSL L+D QGNFGS+DGD A+MRYTE RL
Sbjct: 65 RVVGDVMGRYHPHADTAIYDALVRMAQDFSLLVPLIDSQGNFGSVDGDPPASMRYTEARL 124
Query: 128 NKISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNL 187
+ ++ LL D+D++T+DF NYD E+EP VLP PN+L+NG+ G+AVGM+TNIP HNL
Sbjct: 125 AQAAHFLLNDIDEDTVDFRPNYDENEQEPVVLPAEFPNVLVNGAGGVAVGMSTNIPSHNL 184
Query: 188 TEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRAKTH 247
E+ID + + NPE ++ +L+ +IP PDFPT G+I G + + + TG+G +II+ KTH
Sbjct: 185 GEIIDASVMYIDNPEVTLEELMTVIPGPDFPTGGVIMGDAGIKSAFATGRGTIIIQGKTH 244
Query: 248 IEEFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVIEL 307
IEE R AIIIDE+PYQ NK L+E+I +LVKEKK+E +S+LRDES+KSG+R+ IEL
Sbjct: 245 IEELP-SGRQAIIIDEIPYQTNKAKLVERIHELVKEKKIEGVSDLRDESNKSGIRVAIEL 303
Query: 308 KRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVIKRRTI 367
K+ ++VLN+L T L+ +F +N L L N +P++++L EI+ F+ RKEV+ RRT
Sbjct: 304 KKQINSQVVLNQLLGLTPLRTSFSINTLVLDNSRPRVMSLIEIIETFVAFRKEVLVRRTR 363
Query: 368 FELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIGFN 427
+ L+K RE AH+ G+ IA+ NID + IIR++ EA + E TW+ P ++ G
Sbjct: 364 YRLKKVRERAHLFIGMYIAVLNIDEIVAIIRASKDAAEAAAALRERTWS-PS-EEVRGM- 420
Query: 428 KKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVI 487
I +++ + + Y+L+ Q + IL+M LQRLT +E+ K+ + ++++ +
Sbjct: 421 ------IELVSDSTGVIEGGRYRLTAPQIKAILEMRLQRLTGLEKGKLEVELQSMVALIT 474
Query: 488 DLTDILSNSKRXXXXXXXXXXXXKNKYGSHKKN-IRRSEIILNAINPSTEDLIASQDMVI 546
+ T ILS K + + ++ I S+ ++A E LI ++MV+
Sbjct: 475 EYTKILSTDSLLMCMVREGLLDVKRRVATPRRTTIEESKGDIDA-----ESLIPREEMVV 529
Query: 547 TLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYW 606
T++ G++K +S YRAQKRGG+G+ A K+ED +LF+ +TH +L FSN G++Y
Sbjct: 530 TVTMNGFVKRVKLSNYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFSNVGKVYK 589
Query: 607 LKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNY-VFMSTSLGIVK 665
LKV+++P G SRG+ ++N+F L E IT ++PL + D + V +TS G ++
Sbjct: 590 LKVYKLPLGEPASRGRSLVNIFPLAEGETITSVMPLPDVGVDGGVESMDVVFATSSGNIR 649
Query: 666 KTLLSNFSNPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAM-G 724
+ L++F +G IA+ L+ D LI A + + ++L S GK++RF+ +VR G
Sbjct: 650 RNALADFQYVPSNGKIAMVLTPGDQLISANVCVSTDHVLLSSRMGKSIRFSVGNVRQFKG 709
Query: 725 RSARGVIGMRLEKKQKVIALLVSNNQKQSVLTATENGYGKRTL---IKEYTKHNRGT-KG 780
R + GV ++L + +VI++ V + + S + Y K + IK K
Sbjct: 710 RMSDGVRAIKLAEGDQVISMSVLHGSEAS--SEVREAYLKIPVDSRIKAAESDGESIGKR 767
Query: 781 IISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGV--ILITVE 838
+ + + + +V + I+ +T G RT E R R GV IL T
Sbjct: 768 VSGMLEGLQLSEETFVDMVKKEQFILTVTENGFGKRTSAYEYRTTARGGVGVLNILTTAR 827
Query: 839 N 839
N
Sbjct: 828 N 828
Score = 242 (90.2 bits), Expect = 3.6e-16, P = 3.6e-16
Identities = 68/204 (33%), Positives = 108/204 (52%)
Query: 653 NYVFMSTSLGIVKKTLLSN---FSNPRKSGIIAVNLSNEDFLIGAALTDGSY------DI 703
++V +S+ +G + + N F G+ A+ L+ D +I ++ GS +
Sbjct: 685 DHVLLSSRMGKSIRFSVGNVRQFKGRMSDGVRAIKLAEGDQVISMSVLHGSEASSEVREA 744
Query: 704 MLFSDSGKAVRFNENSVRAMGRSARGVI-GMRLEKKQKVIALLVSNNQKQSVLTATENGY 762
L ++ E+ ++G+ G++ G++L ++ V + ++Q +LT TENG+
Sbjct: 745 YLKIPVDSRIKAAESDGESIGKRVSGMLEGLQLSEETFVDMV----KKEQFILTVTENGF 800
Query: 763 GKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVSEI 822
GKRT EY RG G+++I T RNGKVVA+ V ++MLIT G LIR VS+I
Sbjct: 801 GKRTSAYEYRTTARGGVGVLNILTTARNGKVVASFSVAHTDQVMLITDKGKLIRISVSDI 860
Query: 823 RKMGRSTQGVILITVENKSKLCGV 846
R +GRSTQGV L E K+ V
Sbjct: 861 RIIGRSTQGVTLFKTEKGEKVVSV 884
>TIGR_CMR|CJE_1171 [details] [associations]
symbol:CJE_1171 "DNA gyrase, A subunit" species:195099
"Campylobacter jejuni RM1221" [GO:0003916 "DNA topoisomerase
activity" evidence=ISS] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01897
InterPro:IPR002205 InterPro:IPR005743 InterPro:IPR006691
InterPro:IPR013758 InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989
SMART:SM00434 GO:GO:0005524 GO:GO:0005737 GO:GO:0005694
GO:GO:0006261 EMBL:CP000025 GenomeReviews:CP000025_GR
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 eggNOG:COG0188
HOGENOM:HOG000076278 KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 OMA:IAQEDVV TIGRFAMs:TIGR01063 ProtClustDB:PRK05560
RefSeq:YP_179162.1 ProteinModelPortal:Q5HU73 SMR:Q5HU73
STRING:Q5HU73 GeneID:3231680 KEGG:cjr:CJE1171 PATRIC:20044135
BioCyc:CJEJ195099:GJC0-1198-MONOMER Uniprot:Q5HU73
Length = 862
Score = 1292 (459.9 bits), Expect = 1.9e-155, Sum P(2) = 1.9e-155
Identities = 259/495 (52%), Positives = 361/495 (72%)
Query: 2 NQFAKEV-ISIL-LEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLW 59
N F+K+ I ++ +E + SYLDY+MSVI+GRALPD RDGLKPVHRR+L+AM
Sbjct: 3 NIFSKDSDIELVDIENSIKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKS 62
Query: 60 NRPFVKCARVVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAA 119
FVK AR+VG +G+YHPHGD ++YDALVRMAQ FS+R + GQGNFGSIDGDSAAA
Sbjct: 63 RTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAA 122
Query: 120 MRYTECRLNKISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMA 179
MRYTE +++K+S+ELL D+DK+T+DF+ NYDG E EP VLP+R+PNLL+NGSSGIAVGMA
Sbjct: 123 MRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMA 182
Query: 180 TNIPPHNLTEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGR 239
TNIPPH+L E+IDG+LY+L + + S+ ++++ I PDFPT GIIYG + + Y TG+GR
Sbjct: 183 TNIPPHSLNELIDGLLYLLDSKDVSLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGR 242
Query: 240 VIIRAKTHIEEFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKS 299
V +RAKTHIE+ + N+ I+IDELPYQ NK L+E+I++LVKEK++E IS +RDES+K
Sbjct: 243 VKVRAKTHIEK--KTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNKE 300
Query: 300 GMRIVIELKRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRK 359
G+R+VIELKR + EIVLN L+K T +++TFG+ MLA+ N +PK+ +L E+L F+ HRK
Sbjct: 301 GIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHRK 360
Query: 360 EVIKRRTIFELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPD 419
VI RRTIFEL+KAR AHILEGL IAL NID I +I+++S A++ ++ + + L +
Sbjct: 361 TVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLV-AKFGLSE 419
Query: 420 VSKIIGFNKKNYNTISKINNISKLQNNDMYKLSDI-QAQEILKMP--LQRLTNMEQKKII 476
+ + K ++ + K++N + +I + +EILK L+ L E K+I
Sbjct: 420 LQANAILDMK-LGRLTGLER-EKIENELAELMKEIARLEEILKSETLLENLIRDELKEIR 477
Query: 477 NKYENVIKKVIDLTD 491
+K++ + ++ + D
Sbjct: 478 SKFD--VPRITQIED 490
Score = 452 (164.2 bits), Expect = 4.1e-59, Sum P(2) = 4.1e-59
Identities = 115/336 (34%), Positives = 191/336 (56%)
Query: 379 ILEGLTIALTNIDNFIQIIRSTSTPQEAKNK--IIESTW-NLPDVSKIIGFNKKNYNTIS 435
+LE L + LT+ I I R+ Q+A+ + I+E L ++ ++I K S
Sbjct: 348 LLELLNLFLTHRKTVI-IRRTIFELQKARARAHILEGLKIALDNIDEVIALIKN-----S 401
Query: 436 KINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVIDLTDILSN 495
NN ++ + LS++QA IL M L RLT +E++KI N+ ++K++ L +IL +
Sbjct: 402 SDNNTARDSLVAKFGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIARLEEILKS 461
Query: 496 SKRXXXXXXXXXXXXKNKYGSHKKNIRRSEIILNAINPSTEDLIASQDMVITLSNLGYIK 555
++K+ + I + E + I+ EDLI +++MV+T+++ GYIK
Sbjct: 462 ETLLENLIRDELKEIRSKFDVPR--ITQIEDDYDDID--IEDLIPNENMVVTITHRGYIK 517
Query: 556 SQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKVWQIPQG 615
P +Y QKRGG+GK A+ T D+D+I F ANTHD ++ ++ G+LYWLKV++IP+G
Sbjct: 518 RVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEG 577
Query: 616 SRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFSNP 675
SR ++GK ++N+ +L+ +EKI I+P + DF ++ + T GIVK+T LS + N
Sbjct: 578 SRTAKGKAVVNLINLQAEEKIMAIIPTT----DFDESKSLCFFTKNGIVKRTNLSEYQNI 633
Query: 676 RKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGK 711
R G+ A+NL D L+ A + D +F+ G+
Sbjct: 634 RSVGVRAINLDENDELVTAIIVQRDED-EIFATGGE 668
Score = 245 (91.3 bits), Expect = 1.9e-155, Sum P(2) = 1.9e-155
Identities = 57/172 (33%), Positives = 94/172 (54%)
Query: 671 NFSNPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFS--DSGKAVRFNENSVRAMGRSAR 728
N N + NL NE+ + T G MLF+ G ++F VR +GR +R
Sbjct: 670 NLENQEIENLDDENLENEE----SVSTQGK---MLFAVTKKGMCIKFPLAKVREIGRVSR 722
Query: 729 GVIGMRL-EKKQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTN 787
GV ++ EK +++ +V N +Q +L+ + G GKRT EY +RG KG+I +K
Sbjct: 723 GVTAIKFKEKNDELVGAVVIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLT 782
Query: 788 KRNGKVVAATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILITVEN 839
++ +++ +V+ ++M +T+ G +IR + IRK GR+T GVI++ VEN
Sbjct: 783 EKTKDLISVVIVDETMDLMALTSSGKMIRVDMQSIRKAGRNTSGVIVVNVEN 834
Score = 164 (62.8 bits), Expect = 4.9e-150, Sum P(3) = 4.9e-150
Identities = 58/226 (25%), Positives = 107/226 (47%)
Query: 648 DFPKNNYVFMSTSLGIVKKTLLSNFSNPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFS 707
DF ++ + T GIVK+T LS + N R G+ A+NL D L+ A + D +F+
Sbjct: 606 DFDESKSLCFFTKNGIVKRTNLSEYQNIRSVGVRAINLDENDELVTAIIVQRDED-EIFA 664
Query: 708 DSGKAVRFNENSVRAMGRSARGVIGMRLEKKQKVIALLVSNNQKQSVLTATENGYGKRTL 767
G+ EN + + LE ++ V + Q + + T+ G +
Sbjct: 665 TGGE-----EN---LENQEIENLDDENLENEESV------STQGKMLFAVTKKGMCIKFP 710
Query: 768 IKEYTKHNRGTKGIISIKTNKRNGKVVAATLV-NRYHEIMLITTGGILIRTRVSEIRKMG 826
+ + + R ++G+ +IK ++N ++V A ++ N EI+ I+ GI RT E R
Sbjct: 711 LAKVREIGRVSRGVTAIKFKEKNDELVGAVVIENDEQEILSISAKGIGKRTNAGEYRLQS 770
Query: 827 RSTQGVILITVENKSKLCGVQRLCKITMIKKYIPVITIDGPTASGK 872
R +GVI + + K+K L + ++ + + ++ + T+SGK
Sbjct: 771 RGGKGVICMKLTEKTK-----DLISVVIVDETMDLMAL---TSSGK 808
Score = 144 (55.7 bits), Expect = 1.9e-148, Sum P(3) = 1.9e-148
Identities = 59/222 (26%), Positives = 101/222 (45%)
Query: 650 PKNNYVFMSTSLGIVKKTLLSNFSNPRKSGI--IAVNLSNEDFLIGAALTDGSYDIMLF- 706
P N V T G +K+ + ++ G +AV ++DF I + T ++D ++F
Sbjct: 502 PNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDF-IESFFTANTHDTLMFV 560
Query: 707 SDSG-----KAVRFNENSVRAMGRSARGVIGMRLEKKQKVIALLVSNNQKQSVLTATENG 761
+D G K + E S A G++ +I ++ E+K I ++ +S+ T+NG
Sbjct: 561 TDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKSLCFFTKNG 620
Query: 762 YGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLVNRYHEIMLITTGGI--LIRTRV 819
KRT + EY N + G+ +I ++ N ++V A +V R E + TGG L +
Sbjct: 621 IVKRTNLSEY--QNIRSVGVRAINLDE-NDELVTAIIVQR-DEDEIFATGGEENLENQEI 676
Query: 820 SEI------RKMGRSTQGVILITVENKSKLCGVQRLCKITMI 855
+ + STQG +L V K +C L K+ I
Sbjct: 677 ENLDDENLENEESVSTQGKMLFAVTKKG-MCIKFPLAKVREI 717
Score = 119 (46.9 bits), Expect = 3.8e-142, Sum P(2) = 3.8e-142
Identities = 39/166 (23%), Positives = 78/166 (46%)
Query: 579 DEDWINQLFIANTHDYILCFSNYGRLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITV 638
DE+ N+ ++ + + G + ++ + R SRG I F KN E +
Sbjct: 681 DENLENEESVSTQGKMLFAVTKKGMCIKFPLAKVREIGRVSRGVTAIK-FKEKNDELVGA 739
Query: 639 ILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFSNPRKSG--IIAVNLSNEDF-LIGAA 695
++ + N++++ + ++ GI K+T + + G +I + L+ + LI
Sbjct: 740 VV-IENDEQE------ILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTEKTKDLISVV 792
Query: 696 LTDGSYDIMLFSDSGKAVRFNENSVRAMGRSARGVIGMRLEKKQKV 741
+ D + D+M + SGK +R + S+R GR+ GVI + +E + V
Sbjct: 793 IVDETMDLMALTSSGKMIRVDMQSIRKAGRNTSGVIVVNVENDEVV 838
Score = 103 (41.3 bits), Expect = 1.9e-140, Sum P(2) = 1.9e-140
Identities = 29/107 (27%), Positives = 56/107 (52%)
Query: 545 VITLSNLGYIKSQPISEYRAQKRGGRGKKAM-MT-KDEDWINQLFIANTHDYILCFSNYG 602
++++S G K EYR Q RGG+G M +T K +D I+ + + T D ++ ++ G
Sbjct: 749 ILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTEKTKDLISVVIVDETMD-LMALTSSG 807
Query: 603 RLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVI-LPLSNNKRD 648
++ + + I + RN+ G ++N+ +N E +++ P N D
Sbjct: 808 KMIRVDMQSIRKAGRNTSGVIVVNV---ENDEVVSIAKCPKEENDED 851
Score = 100 (40.3 bits), Expect = 2.7e-143, Sum P(3) = 2.7e-143
Identities = 30/105 (28%), Positives = 53/105 (50%)
Query: 745 LVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLVNRYHE 804
L+ N + V+T T GY KR K+Y K RG KG +++ T + + + N +
Sbjct: 500 LIPN--ENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYD-DDFIESFFTANTHDT 556
Query: 805 IMLITTGGILIRTRVSEIRKMGRSTQG---VILITVENKSKLCGV 846
+M +T G L +V +I + R+ +G V LI ++ + K+ +
Sbjct: 557 LMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQAEEKIMAI 601
Score = 75 (31.5 bits), Expect = 1.7e-137, Sum P(2) = 1.7e-137
Identities = 42/178 (23%), Positives = 82/178 (46%)
Query: 518 KKNIRRSEII-LNAINPSTEDLIASQD-MVITLSNLGYIKSQPISEYRAQKRGGRGKKAM 575
++N+ EI L+ N E+ +++Q M+ ++ G P+++ R R RG A+
Sbjct: 668 EENLENQEIENLDDENLENEESVSTQGKMLFAVTKKGMCIKFPLAKVREIGRVSRGVTAI 727
Query: 576 MTKD--EDWINQLFIANTHDYILCFSNYGRLYWLKVWQIPQGSRNSRGKPIINM-FSLKN 632
K+ ++ + + I N IL S G + SR GK +I M + K
Sbjct: 728 KFKEKNDELVGAVVIENDEQEILSISAKGIGKRTNAGEYRLQSRG--GKGVICMKLTEKT 785
Query: 633 KEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFSNPRK-SGIIAVNLSNED 689
K+ I+V++ + D + +++S +++ + S R SG+I VN+ N++
Sbjct: 786 KDLISVVIV--DETMDL-----MALTSSGKMIRVDMQSIRKAGRNTSGVIVVNVENDE 836
Score = 50 (22.7 bits), Expect = 1.9e-148, Sum P(3) = 1.9e-148
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 1368 LVHISEMDWINKNVTPSKIVQLNDT-VEIMILEINEERRRISLGMK 1412
L + E+ +++ VT K + ND V +++E N+E+ +S+ K
Sbjct: 711 LAKVREIGRVSRGVTAIKFKEKNDELVGAVVIE-NDEQEILSISAK 755
Score = 49 (22.3 bits), Expect = 9.5e-135, Sum P(2) = 9.5e-135
Identities = 21/98 (21%), Positives = 38/98 (38%)
Query: 440 ISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVIDLTDILSNSKRX 499
I K N Y+L + ++ M L T K +I+ ++ + +DL + S+ K
Sbjct: 757 IGKRTNAGEYRLQSRGGKGVICMKLTEKT----KDLISVV--IVDETMDLMALTSSGKMI 810
Query: 500 XXXXXXXXXXXKNKYGSHKKNIRRSEIILNAINPSTED 537
+N G N+ E++ A P E+
Sbjct: 811 RVDMQSIRKAGRNTSGVIVVNVENDEVVSIAKCPKEEN 848
Score = 45 (20.9 bits), Expect = 4.9e-150, Sum P(3) = 4.9e-150
Identities = 18/67 (26%), Positives = 31/67 (46%)
Query: 1062 VVNQILDCFATLFKESLLRHDMRSGEVISAEVIGLDRNFVIINAD---LKSEAFIPIEEF 1118
+V++ +D A ++R DM+S G+ +++N + + S A P EE
Sbjct: 793 IVDETMDLMALTSSGKMIRVDMQSIRKAGRNTSGV----IVVNVENDEVVSIAKCPKEE- 847
Query: 1119 KNDNGEL 1125
ND EL
Sbjct: 848 -NDEDEL 853
Score = 42 (19.8 bits), Expect = 1.9e-06, Sum P(3) = 1.9e-06
Identities = 29/109 (26%), Positives = 44/109 (40%)
Query: 553 YIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKVWQI 612
Y K I YR + GR K T E N+ I D + +N RL + QI
Sbjct: 227 YGKKGIIEAYRTGR--GRVKVRAKTHIEKKTNKDVIVI--DELPYQTNKARL----IEQI 278
Query: 613 PQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSL 661
+ + + + I + NKE I V++ L N +F ST++
Sbjct: 279 AELVKEKQIEGISEVRDESNKEGIRVVIELKREAMSEIVLNNLFKSTTM 327
Score = 38 (18.4 bits), Expect = 3.4e-147, Sum P(3) = 3.4e-147
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 1455 LIHLSDLSWTDPGEEIIRNFKKGDE-IEAIILSIDVEKERISLGIK 1499
L + ++ G I+ +K DE + A+++ D E+E +S+ K
Sbjct: 711 LAKVREIGRVSRGVTAIKFKEKNDELVGAVVIEND-EQEILSISAK 755
Score = 38 (18.4 bits), Expect = 1.5e-142, Sum P(3) = 1.5e-142
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 1240 EESMGEERQKLIETLKEGCTVKGVVKNITDYG 1271
EES+ + + L K+G +K + + + G
Sbjct: 687 EESVSTQGKMLFAVTKKGMCIKFPLAKVREIG 718
Score = 37 (18.1 bits), Expect = 1.2e-136, Sum P(3) = 1.2e-136
Identities = 14/66 (21%), Positives = 30/66 (45%)
Query: 935 VNVTTLIRNEKVSNNASKIAKFKNIRKELFKIQVKFRKFPGLVADGRDMGTTVFPDAFLK 994
+++ LI NE + + K + + ++ Q + K G+ + T + D F++
Sbjct: 495 IDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGK-------GK-LAVTTYDDDFIE 546
Query: 995 IFLTAD 1000
F TA+
Sbjct: 547 SFFTAN 552
>UNIPROTKB|Q7NIY2 [details] [associations]
symbol:gyrA "DNA gyrase subunit A" species:251221
"Gloeobacter violaceus PCC 7421" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR002205 InterPro:IPR005743 InterPro:IPR006691
InterPro:IPR013758 InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989
SMART:SM00434 GO:GO:0005524 GO:GO:0005694 GO:GO:0007059
GO:GO:0006261 Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0009295
GO:GO:0006265 KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 TIGRFAMs:TIGR01063 EMBL:BA000045
GenomeReviews:BA000045_GR HSSP:P09097 RefSeq:NP_924996.1
ProteinModelPortal:Q7NIY2 GeneID:2600452 KEGG:gvi:gvip274
PATRIC:22043559 OMA:PNYDGTR BioCyc:GVIO251221:GH9A-2101-MONOMER
Uniprot:Q7NIY2
Length = 825
Score = 1133 (403.9 bits), Expect = 8.6e-155, Sum P(2) = 8.6e-155
Identities = 217/415 (52%), Positives = 295/415 (71%)
Query: 8 VISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCA 67
V+ L EM +SYL+YAMSVIVGRALPDVRDGLKPVHRR+LFAMHE+ +RPF KCA
Sbjct: 16 VVPTALHSEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILFAMHELGLAPDRPFRKCA 75
Query: 68 RVVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTECRL 127
RVVG+ +GKYHPHGD ++YDALVR+ Q FS R L+ G GNFGSID D AAMRYTECRL
Sbjct: 76 RVVGDVLGKYHPHGDTAVYDALVRLVQDFSSRYPLLSGHGNFGSIDNDPPAAMRYTECRL 135
Query: 128 NKIS-NELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHN 186
+ + LL ++D +T++F N+DG ++EP VLP R+P LL+NGS+GIAVGMATNIPPHN
Sbjct: 136 AAVGVDALLAEIDDQTVEFTDNFDGSQREPEVLPARLPVLLLNGSAGIAVGMATNIPPHN 195
Query: 187 LTEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRAKT 246
L E++DG++ ++ NPE + L++IIP PDFPT G I G + + Y TG+G + +R T
Sbjct: 196 LGELVDGLVALIDNPELADEQLLRIIPGPDFPTGGQIIGTEGIREAYLTGRGSITMRGIT 255
Query: 247 HIEEFN--RENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIV 304
H EE R + AII+ LPYQVNK + +EK+++LV K+ IS+LRDES++ G+R+V
Sbjct: 256 HCEEVGSGRRRKPAIIVTALPYQVNKAAWIEKVAELVNLGKVNGISDLRDESNREGVRVV 315
Query: 305 IELKRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVIKR 364
+E+KR PE +L LY+ T LQ FG +L LV GQP+LL L+E+L F+ R + R
Sbjct: 316 LEMKREARPEAILAGLYRLTPLQANFGTILLTLVGGQPRLLKLRELLEQFLEFRVATLTR 375
Query: 365 RTIFELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPD 419
R + LR+A E AH LEG +AL N+ +Q++ + +A+ ++ E+++ L +
Sbjct: 376 RIQYNLRRASERAHQLEGQLVALANLQPIVQMLSAARDAAQARAEL-EASYGLSE 429
Score = 400 (145.9 bits), Expect = 8.6e-155, Sum P(2) = 8.6e-155
Identities = 108/404 (26%), Positives = 202/404 (50%)
Query: 449 YKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVIDLTDILSNSKRXXXXXXXXXX 508
Y LS+ Q++EIL+MPL+RLT ++++++ +++ + +KVI+L L + ++
Sbjct: 425 YGLSERQSEEILQMPLRRLTQLDRERLASEHRELREKVIELQSQLDSRRKLLGLLKRELR 484
Query: 509 XXKNKYGSHKKNIRRSEIILNAINPSTEDLIASQDMVITLSNLGYIKSQPISEYRAQKRG 568
K K+ ++ + A P+ ++ + ++V+ L++ GY++ P + + + R
Sbjct: 485 DLKKKHADPRRTCIEAR---TAPLPTLAEITSDDEVVVQLTHRGYVRRIPAAAFERRSRS 541
Query: 569 GRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKVWQIPQGSRNSRGKPIINMF 628
R T+D D++ + + T + +L + GR Y LKV +IP+ SRG P++ +
Sbjct: 542 RRA--VSRTEDNDFVVESYPTRTRNELLVITRSGRAYSLKVSEIPETGPRSRGTPLVTLL 599
Query: 629 SLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFSNPRKSGIIAVNLSNE 688
S++ E+I N +P + ++ + T G +KK LLS +N G++ + LS E
Sbjct: 600 SIQG-EQIAATFVREN----YPPDLFLVLLTREGRIKKLLLSECANLTGRGLMMLKLSEE 654
Query: 689 DFLIGAALTDGSYDIMLFSDSGKAVRF--NENSVRAMGRSARGVIGMRLEKKQKVIALLV 746
D LI L I++ + +G+ +RF +E + AMGRSA G+ ++L + + + A+ V
Sbjct: 655 DQLIQVGLATAHSQIVVGTSAGRLLRFVADEAQLPAMGRSALGLQAIKLRRGESLAAMTV 714
Query: 747 SNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATL-VNRYHEI 805
N + +L + G GKR E R G +RNG + A L V E+
Sbjct: 715 VGNG-EDLLMVSRLGLGKRLKTGEIRLQERAGLGTPVGLLRERNGDSLLAVLAVGAEGEV 773
Query: 806 MLITTGGILIRTRVSEIRKMGRSTQGVILITVENKSKLCGVQRL 849
+ T L++ + E+ RS+ G L + ++ V RL
Sbjct: 774 AMATDQERLVQVDLGELAATDRSSPGKPLAVLNPAEQIIAVTRL 817
Score = 48 (22.0 bits), Expect = 1.3e-117, Sum P(2) = 1.3e-117
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 997 LTADIKQRTKRRYKQLMQKGFSV-SMSDL---LINLIKRDIRD-KTRNLSPLK-CPE 1047
LT ++R +++L +K + S D L+ L+KR++RD K ++ P + C E
Sbjct: 443 LTQLDRERLASEHRELREKVIELQSQLDSRRKLLGLLKRELRDLKKKHADPRRTCIE 499
Score = 47 (21.6 bits), Expect = 1.7e-117, Sum P(2) = 1.7e-117
Identities = 17/63 (26%), Positives = 27/63 (42%)
Query: 374 REYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIGFNKKNYNT 433
R+ IL+ LT +D R S +E + K+IE L K++G K+
Sbjct: 430 RQSEEILQMPLRRLTQLDRE----RLASEHRELREKVIELQSQLDSRRKLLGLLKRELRD 485
Query: 434 ISK 436
+ K
Sbjct: 486 LKK 488
>TIGR_CMR|CBU_0528 [details] [associations]
symbol:CBU_0528 "ribosomal protein S1" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] InterPro:IPR000110 InterPro:IPR003029
Pfam:PF00575 PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126
GO:GO:0006412 GO:GO:0003723 GO:GO:0005840 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
HSSP:P05055 eggNOG:COG0539 RefSeq:NP_819560.2
ProteinModelPortal:Q83E09 SMR:Q83E09 PRIDE:Q83E09 GeneID:1208413
KEGG:cbu:CBU_0528 PATRIC:17929757 HOGENOM:HOG000044052 KO:K02945
OMA:QLGQDPW ProtClustDB:PRK06299 BioCyc:CBUR227377:GJ7S-531-MONOMER
TIGRFAMs:TIGR00717 Uniprot:Q83E09
Length = 551
Score = 1463 (520.1 bits), Expect = 6.9e-150, P = 6.9e-150
Identities = 281/553 (50%), Positives = 390/553 (70%)
Query: 1068 DCFATLFKESLLRHDMRSGEVISAEVIGLDRNFVIINADLKSEAFIPIEEFKNDNGELEV 1127
+ FA LF++SL D+R G ++ A V+ + + VI+NA LKSE IP EF+N+ E
Sbjct: 3 ETFAELFEKSLTETDLRPGALVKATVVEVRPDRVIVNAGLKSEGIIPASEFRNE----EP 58
Query: 1128 KIGDFVSVAIESLENGFGDTILSRDKAKRLASWLSLEKAMESGEIITGTINGKVKGGLTV 1187
+GD V IE+ +NGFG+T LSR+KA+R +W LEKA ++GE++ G I +VKGG TV
Sbjct: 59 HVGDEFFVVIEASDNGFGETRLSREKARRAKAWSELEKAYKAGEMVKGVIIERVKGGFTV 118
Query: 1188 LTNGLKAFLPGSLVDIRPVKDTTPFEGKTMDFKVIKLDRKRNNVVLSHRAVIEESMGEER 1247
N ++AFLPGSLVD++PV+D E K +DFK+IK+D++RNNVV+S RAV+E ER
Sbjct: 119 DLNSVRAFLPGSLVDVKPVRDPGYLEDKEIDFKIIKMDQRRNNVVVSRRAVMEAETSAER 178
Query: 1248 QKLIETLKEGCTVKGVVKNITDYGAFIDLGGIDGLLHITDIAWRRVKHPSEILTIGQDIS 1307
Q +E L+EG +KGV+KNITDYGAF+DLGG+DGLLHITD+AW RVKHPS++L +G ++
Sbjct: 179 QARLEELQEGQEIKGVIKNITDYGAFVDLGGVDGLLHITDMAWGRVKHPSDLLNVGDEVH 238
Query: 1308 TKILKYDQEKNRVSLGMKQLGIDPWIGLSFRYPRGTRLLGKVTNLTDYGAFVEIEKGIEG 1367
K+LK+D++K RVSLGMKQL DPW + RYP +R+ GKVTN+TDYG FV++E+G+EG
Sbjct: 239 VKVLKFDRDKKRVSLGMKQLADDPWAKIERRYPVNSRVFGKVTNITDYGCFVKLEEGVEG 298
Query: 1368 LVHISEMDWINKNVTPSKIVQLNDTVEIMILEINEERRRISLGMKQCKDNPWENFXXXXX 1427
LVH SE+DW NKN+ PSK+VQ + VE+M+LEI+EERRRISLG+KQCK NPW+ F
Sbjct: 299 LVHTSELDWTNKNIHPSKVVQSGEEVEVMVLEIDEERRRISLGIKQCKRNPWQEFAEKHE 358
Query: 1428 XXXXXXXXXXXXTDFGIFIGLDGNIDGLIHLSDLSWTDPGEEIIRNFKKGDEIEAIILSI 1487
TDFG+FIGL+G+IDGL+HLSD+SWT+ GEE IRN+KKGDE++A+IL I
Sbjct: 359 KDEKITGKVRSITDFGMFIGLEGDIDGLVHLSDISWTESGEEAIRNYKKGDEVQAVILGI 418
Query: 1488 DVEKERISLGIKQLEGDPFNNYVNINDKGSLVNGIIKSIDTNKGAIIQLSNEVEGYLRIS 1547
D E+ERISLGIKQLEGDPF +V DK +++ +K +++ K A+++L+++V G +R++
Sbjct: 419 DPERERISLGIKQLEGDPFMEFVESYDKDAVIQAKVKEVES-KQAVLELADQVLGQMRLA 477
Query: 1548 EEDNKHEK----KLKIGENIDVLTVLIDHKTRYIQLSFXXXXXXXXXXLLTSINANTISG 1603
+ K +L +G+ + V V +D K R I +S T + T
Sbjct: 478 DYTYDRVKDLTQELNVGDEVAVKIVNVDRKNRLINVSHKAVEGRSEKGTRTVSDVPT--- 534
Query: 1604 TTNLGLILKAELE 1616
T LG +LK +++
Sbjct: 535 KTTLGDLLKEKIQ 547
>TIGR_CMR|CHY_2704 [details] [associations]
symbol:CHY_2704 "DNA gyrase, A subunit" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003916 "DNA
topoisomerase activity" evidence=ISS] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=ISS]
HAMAP:MF_01897 InterPro:IPR002205 InterPro:IPR005743
InterPro:IPR006691 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 Pfam:PF03989 SMART:SM00434 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006261
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 eggNOG:COG0188
KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
OMA:IAQEDVV TIGRFAMs:TIGR01063 ProtClustDB:PRK05560
HOGENOM:HOG000076279 RefSeq:YP_361486.1 ProteinModelPortal:Q3A8P8
SMR:Q3A8P8 STRING:Q3A8P8 GeneID:3728127 KEGG:chy:CHY_2704
PATRIC:21278429 BioCyc:CHYD246194:GJCN-2702-MONOMER Uniprot:Q3A8P8
Length = 812
Score = 1386 (493.0 bits), Expect = 9.9e-142, P = 9.9e-142
Identities = 328/821 (39%), Positives = 485/821 (59%)
Query: 7 EVISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKC 66
+V+ + LEEEM SYLDYAMSVIVGRALPDVRDGLKPVHRR+L+AMH + ++P K
Sbjct: 6 KVLPVKLEEEMKSSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMHILGMTPDKPHRKS 65
Query: 67 ARVVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTECR 126
A +VGE +GK+HPHGDV++YDA+VRMAQ FS R L+DG GNFGS+DGDSAAAMRYTE R
Sbjct: 66 AHIVGEVLGKFHPHGDVAVYDAMVRMAQDFSTRYPLIDGHGNFGSVDGDSAAAMRYTEAR 125
Query: 127 LNKISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHN 186
+ KI+ E+L D+DKET+DF+ NYD KEP VLP+RIPNLL+NGSSGIAVGMATNIPPHN
Sbjct: 126 MAKITVEMLRDIDKETVDFMPNYDNSTKEPVVLPSRIPNLLVNGSSGIAVGMATNIPPHN 185
Query: 187 LTEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRAKT 246
L EVIDGV+ ++ +PE I +L+KII PDFPT G I G + Y TG+G + +RA T
Sbjct: 186 LREVIDGVVKMIDDPEVEIGELMKIIKGPDFPTGGKIMGRQGIRQAYTTGRGTIKVRAVT 245
Query: 247 HIEEFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVIE 306
E+ + +TAII+ ELPYQVNK L+EKI++LV++KK++ I++LRDESD+ GMRIVIE
Sbjct: 246 TFEKLSG-GKTAIIVTELPYQVNKAKLIEKIAELVRDKKIDGIADLRDESDRKGMRIVIE 304
Query: 307 LKRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVIKRRT 366
LKR+ P++VLN+L+K TQLQ+TFG+ MLALV+ QP++LNLKEIL+Y++ H+K+V+ RRT
Sbjct: 305 LKRDANPQVVLNQLFKHTQLQDTFGIIMLALVDNQPRILNLKEILFYYLEHQKDVVTRRT 364
Query: 367 IFELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPD--VSKII 424
++L KA E AHILEGL IAL N+D I+IIR + A+ ++ S + L + I+
Sbjct: 365 RYDLNKAEERAHILEGLKIALANLDEVIKIIRGSKDVDTAREGLM-SRFGLTEKQAQAIL 423
Query: 425 GFNKKNYNTIS--KINNISKLQNNDMYKLSDIQAQE--ILKMPLQRLTNMEQKKIINKYE 480
+ + KI+ + + + I A E +L + Q L +++K +
Sbjct: 424 DMRLQRLTALEREKIDEEYRELIKKIEYFNSILADERVLLGVIRQELLEIKEKYGDARRT 483
Query: 481 NVIKK--VIDLTDILSNSKRXXXXXXXXXXXXKNKYGSHKKNIRRSEIILNAINPSTEDL 538
+ + + D D+++ + K KN RR + A+ ED
Sbjct: 484 QITNEESIFDEEDLIA--EEDMVITITHQGYIKRLPVDTYKNQRRGGRGVTAMATKEEDF 541
Query: 539 I------ASQDMVITLSNLG--Y-IKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIA 589
+ ++ + ++ +N G Y +K I E Q +G + ++ I +
Sbjct: 542 VRHLFVTSTHNYLLFFTNKGKVYRLKVHEIPEAGRQAKGTPIVNLLYVDQDERITAIIPV 601
Query: 590 N--THDYILCFSNYGRLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKR 647
T D+ L + +K + + +SR II + SL+ +K+ + + LS +
Sbjct: 602 KEFTDDHYLFMVTKNGI--VKKTVLSEYD-SSRRDGIIAL-SLEEGDKL-IDVKLSTGQE 656
Query: 648 DFPKNNYVFMSTSLGIVKKTLLSNFSNPRKS--GIIAVNLSNEDFLIGAALTDGSYDIML 705
+ V + T G+ + ++ ++ G+ + LS D +IG + D +++
Sbjct: 657 E------VIIGTKKGMAIRFSETDVRPMGRTARGVKGITLSPGDEVIGLEVVDEQAELLT 710
Query: 706 FSDSG--KAVRFNENSVRAMGRSARGVIGMRLEKKQKVIALLVSNNQKQSVLTATENGYG 763
+ G K F+E R GR +G+I M++ +K + +V+ + V+ + G
Sbjct: 711 VTSKGFGKKTPFSE--YRVQGRGGKGIINMKVTQKNGEVVGIVAVRPEDEVMAISGEGIM 768
Query: 764 KRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLVNRYHE 804
R E + R T+G+ +K NK + A + + E
Sbjct: 769 IRVKAAEISTQGRATQGVTLMKLNKDDQLTAVAKIAAQEDE 809
Score = 782 (280.3 bits), Expect = 1.6e-76, P = 1.6e-76
Identities = 165/401 (41%), Positives = 250/401 (62%)
Query: 449 YKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVIDLTDILSNSKRXXXXXXXXXX 508
+ L++ QAQ IL M LQRLT +E++KI +Y +IKK+ IL++ +
Sbjct: 412 FGLTEKQAQAILDMRLQRLTALEREKIDEEYRELIKKIEYFNSILADERVLLGVIRQELL 471
Query: 509 XXKNKYGSHKKNIRRSEIILNAINPSTEDLIASQDMVITLSNLGYIKSQPISEYRAQKRG 568
K KYG + RR++I EDLIA +DMVIT+++ GYIK P+ Y+ Q+RG
Sbjct: 472 EIKEKYG----DARRTQITNEESIFDEEDLIAEEDMVITITHQGYIKRLPVDTYKNQRRG 527
Query: 569 GRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKVWQIPQGSRNSRGKPIINMF 628
GRG AM TK+ED++ LF+ +TH+Y+L F+N G++Y LKV +IP+ R ++G PI+N+
Sbjct: 528 GRGVTAMATKEEDFVRHLFVTSTHNYLLFFTNKGKVYRLKVHEIPEAGRQAKGTPIVNLL 587
Query: 629 SLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFSNPRKSGIIAVNLSNE 688
+ E+IT I+P+ ++F ++Y+FM T GIVKKT+LS + + R+ GIIA++L
Sbjct: 588 YVDQDERITAIIPV----KEFTDDHYLFMVTKNGIVKKTVLSEYDSSRRDGIIALSLEEG 643
Query: 689 DFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAMGRSARGVIGMRLEKKQKVIALLVSN 748
D LI L+ G ++++ + G A+RF+E VR MGR+ARGV G+ L +VI L V +
Sbjct: 644 DKLIDVKLSTGQEEVIIGTKKGMAIRFSETDVRPMGRTARGVKGITLSPGDEVIGLEVVD 703
Query: 749 NQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLVNRYHEIMLI 808
Q + +LT T G+GK+T EY RG KGII++K ++NG+VV V E+M I
Sbjct: 704 EQAE-LLTVTSKGFGKKTPFSEYRVQGRGGKGIINMKVTQKNGEVVGIVAVRPEDEVMAI 762
Query: 809 TTGGILIRTRVSEIRKMGRSTQGVILITVENKSKLCGVQRL 849
+ GI+IR + +EI GR+TQGV L+ + +L V ++
Sbjct: 763 SGEGIMIRVKAAEISTQGRATQGVTLMKLNKDDQLTAVAKI 803
>TIGR_CMR|BA_3656 [details] [associations]
symbol:BA_3656 "DNA topoisomerase IV, A subunit"
species:198094 "Bacillus anthracis str. Ames" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009340 "DNA topoisomerase IV
complex" evidence=ISS] InterPro:IPR002205 InterPro:IPR005741
InterPro:IPR006691 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 Pfam:PF03989 SMART:SM00434 GO:GO:0005524 GO:GO:0005694
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 HOGENOM:HOG000076279 KO:K02621
ProtClustDB:PRK05561 TIGRFAMs:TIGR01061 HSSP:P09097
RefSeq:NP_845921.1 RefSeq:YP_020291.1 RefSeq:YP_029648.1
ProteinModelPortal:Q81Y99 SMR:Q81Y99 DNASU:1085874
EnsemblBacteria:EBBACT00000011931 EnsemblBacteria:EBBACT00000015898
EnsemblBacteria:EBBACT00000022636 GeneID:1085874 GeneID:2818280
GeneID:2851102 KEGG:ban:BA_3656 KEGG:bar:GBAA_3656 KEGG:bat:BAS3391
OMA:SYIAHRK BioCyc:BANT260799:GJAJ-3453-MONOMER
BioCyc:BANT261594:GJ7F-3562-MONOMER Uniprot:Q81Y99
Length = 807
Score = 1024 (365.5 bits), Expect = 4.9e-137, Sum P(2) = 4.9e-137
Identities = 211/484 (43%), Positives = 317/484 (65%)
Query: 5 AKEVISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFV 64
A++ + LE+ + + Y+ +I RALPD RDGLKPV RR+L++M+ N+ ++ F
Sbjct: 3 AEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAFR 62
Query: 65 KCARVVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTE 124
K A+ VG +G YHPHGD S+Y+A+VR++Q++ +R LV+ GN GS+DGD AAAMRYTE
Sbjct: 63 KSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYTE 122
Query: 125 CRLNKISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPP 184
RL+ I++ELL DLDKET++F+SN+D +EP VLP PNLL+NGS+GI+ G AT IPP
Sbjct: 123 ARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIPP 182
Query: 185 HNLTEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRA 244
H+L EVID + + P +++DL+ ++ PDFPT GII G+ + Y TGKG++IIR
Sbjct: 183 HHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIRG 242
Query: 245 KTHIEEFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIV 304
K +E R + I+I E+PY+VNK +L++K+ +L +KKL+ I+ +RDE+D++G+RIV
Sbjct: 243 KAEVETV-RGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIV 301
Query: 305 IELKRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVIKR 364
+ELK+ E +LN LYK T LQ + NM+A+ N +P L+ L +IL +I H+KEV+ R
Sbjct: 302 VELKKEANSEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTR 361
Query: 365 RTIFELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKII 424
R+ +ELRKA HI+EGL AL+ +D I+ IR++ + AK+ NL S
Sbjct: 362 RSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKD-------NL---SAKF 411
Query: 425 GFNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILK--MPLQRLTNMEQKKIINKYENV 482
GF + I + + +L N D+ L +A E+ K + LQ + E K+++ +
Sbjct: 412 GFTEAQAEAIVSLQ-LYRLTNTDITALQQ-EADELNKKIIELQAILQSE-KRLLQVIKTD 468
Query: 483 IKKV 486
+K+V
Sbjct: 469 LKRV 472
Score = 353 (129.3 bits), Expect = 4.9e-137, Sum P(2) = 4.9e-137
Identities = 105/397 (26%), Positives = 188/397 (47%)
Query: 449 YKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVIDLTDILSNSKRXXXXXXXXXX 508
+ ++ QA+ I+ + L RLTN + + + + + KK+I+L IL + KR
Sbjct: 411 FGFTEAQAEAIVSLQLYRLTNTDITALQQEADELNKKIIELQAILQSEKRLLQVIKTDLK 470
Query: 509 XXKNKYGSHKKNIRRSEIILNAINPSTEDLIASQDMVITLSNLGYIKSQPISEYRAQKRG 568
K Y ++ I +I I E +I +D+++T++ GY+K + +R+
Sbjct: 471 RVKKTYSDDRRAIIEDQI--EEIKIDVEVMIPQEDVIVTVTKEGYVKR---TGWRSHN-A 524
Query: 569 GRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKVWQIPQGSRNSRGKPIINMF 628
GK M K+ D + + F NT + +L F+N G +L V+++P G+ + N+
Sbjct: 525 SNGKDFGM-KEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIV 583
Query: 629 SLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFSNPRKS-GIIAVNLSN 687
SL E I + N + + K VF+ T G++KKT L+ + R S +AVNL
Sbjct: 584 SLDRDETIIWATVVPNFEEE--KRFIVFV-TKNGMIKKTELNQYKVQRYSRAFVAVNLKK 640
Query: 688 EDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAMGRSARGVIGMRLEKKQKVIALLVS 747
+D ++ TDG+ DI+L + A+ F+E+ V +G A GV + L++ V +
Sbjct: 641 DDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSPVGVRAAGVKAINLKEDDYVASGKPL 700
Query: 748 NNQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNG-KVVAATLVNRYHEIM 806
N K ++ T+ G KR E K R +G++ K KRN ++V +V +
Sbjct: 701 NADKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPYRIVGIEIVRDDELVY 760
Query: 807 LITTGGILIRTRVSEIRKMGRSTQGVILITVENKSKL 843
+ T I+ R R + G +++ V + ++
Sbjct: 761 MKTEKHIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEV 797
>UNIPROTKB|Q8CM44 [details] [associations]
symbol:gyrA "DNA gyrase subunit A" species:189518
"Leptospira interrogans serovar Lai str. 56601" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] HAMAP:MF_01897 InterPro:IPR002205 InterPro:IPR005743
InterPro:IPR006691 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 Pfam:PF03989 SMART:SM00434 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0009295 GO:GO:0006265 HOGENOM:HOG000076278
KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
OMA:IAQEDVV TIGRFAMs:TIGR01063 ProtClustDB:PRK05560 EMBL:AE010300
GenomeReviews:AE010300_GR HSSP:P09097 RefSeq:NP_710187.1
ProteinModelPortal:Q8CM44 SMR:Q8CM44 GeneID:1149349
KEGG:lil:LA_0006 PATRIC:22380851 BioCyc:LINT189518:GJBB-6-MONOMER
Uniprot:Q8CM44
Length = 834
Score = 1335 (475.0 bits), Expect = 2.5e-136, P = 2.5e-136
Identities = 308/805 (38%), Positives = 470/805 (58%)
Query: 8 VISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCA 67
VI + +E++M ++YL YAMSVIVGRALPDVRDGLKPVHRR+L AM+E +RP+VKCA
Sbjct: 32 VIPVEIEDQMKEAYLGYAMSVIVGRALPDVRDGLKPVHRRILHAMNERAWRSDRPYVKCA 91
Query: 68 RVVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTECRL 127
++VGE +G YHPHGD S+Y+ALVRM Q FSLR L+DGQGNFGSIDGD+ AA RYTE RL
Sbjct: 92 KIVGEVIGNYHPHGDASVYEALVRMVQEFSLRVPLIDGQGNFGSIDGDNPAAYRYTEARL 151
Query: 128 NKISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNL 187
K++ ELL D++KET+ F NYD +++P VLP PNLL+NGSSGIAVGMATNIPPHNL
Sbjct: 152 EKVAEELLRDIEKETVSFSPNYDDTKEQPDVLPANFPNLLVNGSSGIAVGMATNIPPHNL 211
Query: 188 TEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRAKTH 247
E ID V+ V+ NPE +I +++KIIP PDFPT+GII G + Y TGKG + IR+K
Sbjct: 212 RETIDAVIAVIRNPEITIPEILKIIPGPDFPTSGIIIGGEGLISAYSTGKGSIRIRSKVE 271
Query: 248 IEEFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVIEL 307
IEE + R I++ E+PYQVNKK LLEKI LV EK++E IS + D SD+ G+R+ I +
Sbjct: 272 IEE-KKNGREVIVVTEIPYQVNKKVLLEKIGDLVNEKQIEGISEILDLSDRKGIRVEIHI 330
Query: 308 KRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVIKRRTI 367
K++ +++LN+LYK TQLQ ++G+ MLA+++ +PK+ N+KEIL + HR+EVI RRT
Sbjct: 331 KKDANAQVILNQLYKMTQLQVSYGITMLAILDNKPKIFNIKEILTAYAAHRREVIVRRTQ 390
Query: 368 FELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSK--IIG 425
F+L KA + AHILEGL IAL NI++ I++IR++ P EAK +++ ++L +V I+
Sbjct: 391 FDLDKAEKRAHILEGLKIALENIEDVIKVIRASKNPPEAKQQLM-IRFSLSEVQSDAILE 449
Query: 426 FNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMP--LQRLTNMEQKKIINKYENVI 483
+ ++ I +L+ ++ KL I ++IL P + + E +++ +KY N
Sbjct: 450 MRLQRLTSLEVQKIIDELE--EVRKLI-IDLKDILAKPSRVNEIVCTELQEVGDKYGNKR 506
Query: 484 KKVIDLTDILSNSKRXXXXXXXXXXXXKNKYGSHKKNI--------RRSEIILNAINPST 535
K I + I S+S + Y K + +R + ++
Sbjct: 507 KTEISIETIESSSFNAEDLIADEEIVIQITYDQFIKRLPIDTFKRQKRGGKGIQGLSQKR 566
Query: 536 EDLIA------SQDMVITLSNLGYIKSQPISEYRAQKRGGRGK--KAMMT-KDEDWINQL 586
+D+I + D ++ SN+G + E + RGK KA++ +++++I+ +
Sbjct: 567 DDVIKIMKAAMTHDNIMFFSNIGKVYVMKAYELPIASKEARGKSLKAIINLREDEYISSV 626
Query: 587 FIANTHDYILCFSNYGRLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNK 646
F D R ++K Q+ + N + II + L+ +++ + +++
Sbjct: 627 FTFRGEDMDKDLLLVTRKGFIKRIQLKEFG-NVKKSGIIAI-GLREGDELIKVESMTD-- 682
Query: 647 RDFPKNNYVFMSTSLGIVKKTLLSNFSNPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLF 706
+D +F L + + + SG+ + L+ +D ++G + DI +
Sbjct: 683 KD---EVMIFSKKGLALRIEGNIIRAQGRTASGVTGMRLAEDDAIVGLSKYKEGEDIFVV 739
Query: 707 SDSGKAVRFNENSVRAMGRSARGVIGMRLEKKQKVIALLVSNNQKQSVLTATENGYGKRT 766
S+ G R A GR +G+ +++ +K S + ++ T+ G R
Sbjct: 740 SEEGYGKRLGFEEFAAKGRGGKGMAYLKITEKNGFSVGTGSVGSEDEIILITQQGMTIRI 799
Query: 767 LIKEYTKHNRGTKG--IISIKTNKR 789
+ +K R G I+ +K N +
Sbjct: 800 NAFDISKLGRTAVGVRIVDLKDNDK 824
Score = 614 (221.2 bits), Expect = 1.4e-58, P = 1.4e-58
Identities = 151/432 (34%), Positives = 239/432 (55%)
Query: 416 NLPDVSKIIGFNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKI 475
N+ DV K+I +K +K Q + LS++Q+ IL+M LQRLT++E +KI
Sbjct: 412 NIEDVIKVIRASKNPPE--------AKQQLMIRFSLSEVQSDAILEMRLQRLTSLEVQKI 463
Query: 476 INKYENVIKKVIDLTDILSNSKRXXXXXXXXXXXXKNKYGSHKKNIRRSEIILNAINPST 535
I++ E V K +IDL DIL+ R +KYG N R++EI + I S+
Sbjct: 464 IDELEEVRKLIIDLKDILAKPSRVNEIVCTELQEVGDKYG----NKRKTEISIETIESSS 519
Query: 536 ---EDLIASQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTH 592
EDLIA +++VI ++ +IK PI ++ QKRGG+G + + K +D I + A TH
Sbjct: 520 FNAEDLIADEEIVIQITYDQFIKRLPIDTFKRQKRGGKGIQGLSQKRDDVIKIMKAAMTH 579
Query: 593 DYILCFSNYGRLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKN 652
D I+ FSN G++Y +K +++P S+ +RGK + + +L+ E I+ + D K+
Sbjct: 580 DNIMFFSNIGKVYVMKAYELPIASKEARGKSLKAIINLREDEYISSVFTFRGE--DMDKD 637
Query: 653 NYVFMSTSLGIVKKTLLSNFSNPRKSGIIAVNLSNEDFLIGA-ALTDGSYDIMLFSDSGK 711
+ + T G +K+ L F N +KSGIIA+ L D LI ++TD ++M+FS G
Sbjct: 638 --LLLVTRKGFIKRIQLKEFGNVKKSGIIAIGLREGDELIKVESMTDKD-EVMIFSKKGL 694
Query: 712 AVRFNENSVRAMGRSARGVIGMRLEKKQKVIALLVSNNQKQSVLTATENGYGKRTLIKEY 771
A+R N +RA GR+A GV GMRL + ++ L + + + +E GYGKR +E+
Sbjct: 695 ALRIEGNIIRAQGRTASGVTGMRLAEDDAIVGLS-KYKEGEDIFVVSEEGYGKRLGFEEF 753
Query: 772 TKHNRGTKGIISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQG 831
RG KG+ +K ++NG V V EI+LIT G+ IR +I K+GR+ G
Sbjct: 754 AAKGRGGKGMAYLKITEKNGFSVGTGSVGSEDEIILITQQGMTIRINAFDISKLGRTAVG 813
Query: 832 VILITVENKSKL 843
V ++ +++ K+
Sbjct: 814 VRIVDLKDNDKV 825
>TIGR_CMR|BA_0006 [details] [associations]
symbol:BA_0006 "DNA gyrase, A subunit" species:198094
"Bacillus anthracis str. Ames" [GO:0003918 "DNA topoisomerase type
II (ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISS] HAMAP:MF_01897
InterPro:IPR002205 InterPro:IPR005743 InterPro:IPR006691
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 Pfam:PF03989 SMART:SM00434 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0006261 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0006265 KO:K02469 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 OMA:IAQEDVV TIGRFAMs:TIGR01063
ProtClustDB:PRK05560 Gene3D:1.10.268.10 HOGENOM:HOG000076279
HSSP:P09097 RefSeq:NP_842578.1 RefSeq:YP_016609.1
RefSeq:YP_026297.1 ProteinModelPortal:Q81W30 SMR:Q81W30
DNASU:1083944 EnsemblBacteria:EBBACT00000012746
EnsemblBacteria:EBBACT00000018520 EnsemblBacteria:EBBACT00000022030
GeneID:1083944 GeneID:2816389 GeneID:2851434 KEGG:ban:BA_0006
KEGG:bar:GBAA_0006 KEGG:bat:BAS0006
BioCyc:BANT260799:GJAJ-6-MONOMER BioCyc:BANT261594:GJ7F-6-MONOMER
Uniprot:Q81W30
Length = 823
Score = 1329 (472.9 bits), Expect = 1.1e-135, P = 1.1e-135
Identities = 308/807 (38%), Positives = 480/807 (59%)
Query: 2 NQFAKEVISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNR 61
NQ + I + EM S+LDYAMSVIV RALPDVRDGLKPVHRRVL+AM+++ ++
Sbjct: 4 NQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITADK 63
Query: 62 PFVKCARVVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMR 121
+ K AR+VGE +GKYHPHGD ++Y+ +VRMAQ FS R LVDG GNFGS+DGDSAAAMR
Sbjct: 64 AYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAAMR 123
Query: 122 YTECRLNKISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATN 181
YTE R++KIS EL+ D+ K TID+ NYDG E+EP VLP R PNLL+NG++GIAVGMATN
Sbjct: 124 YTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMATN 183
Query: 182 IPPHNLTEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVI 241
IPPH L EVIDGVL + HNP+ +I +L++ IP PDFPTAG+I G S + Y TG+G +I
Sbjct: 184 IPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLILGRSGIRRAYETGRGSII 243
Query: 242 IRAKTHIEEFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSGM 301
+RAK IEE + +II+ ELPYQVNK L+EKI++LV++KK+E I++LRDESD++GM
Sbjct: 244 LRAKVEIEE-KSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNGM 302
Query: 302 RIVIELKRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEV 361
RIV+E++R+ ++LN LYK T LQ +FG+NML+LVNG+P++LNLK+ LY+++ H+K V
Sbjct: 303 RIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKVV 362
Query: 362 IKRRTIFELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPD-- 419
I+RRT +EL KA AHILEGL IAL ++D I +IRS+ T + AK ++E + L +
Sbjct: 363 IRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMER-FGLSEKQ 421
Query: 420 VSKIIGFNKKNYNTISKINNISKLQNNDMYKL-SDIQA-----QEILKMPLQRLTNMEQK 473
I+ + + + I + + D+ KL ++++A +++L++ + LT ++++
Sbjct: 422 AQAILDMRLQRLTGLER-EKIEQ-EYQDLMKLIAELKAILADEEKVLEIIREELTEVKER 479
Query: 474 -KIINKYENVIKKVIDLTDILSNSKRXXXXXXXXXXXXKNKYGSHKKNIRRSEIILNAIN 532
+ E I + + D ++ K S K R + +
Sbjct: 480 FNDKRRTEITIGGMESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRGGRGVQGMG 539
Query: 533 PSTEDLI------ASQDMVITLSNLGYI---KSQPISEYRAQKRGGRGKKAMMTKDEDWI 583
+ +D + ++ D ++ +N G + K I EY +G + +WI
Sbjct: 540 TNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLLGVDKGEWI 599
Query: 584 NQLFIANTH--DYILCFSNYGRLYWLKVWQIPQGS-RNSRGKPIINMFSLKNKEKITVIL 640
N + D L F+ + K + P S N R +I + SL+ ++++ + +
Sbjct: 600 NAIIPIREFGDDEFLFFTTKQGIS--K--RTPLSSFANIRTNGLIAI-SLREEDEV-ISV 653
Query: 641 PLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFSNPRKS--GIIAVNLSNEDFLIGAALTD 698
L++ +D + + TS G++ + + + ++ G+ A+ L ED ++G + +
Sbjct: 654 RLTSGDKD------IIVGTSNGMLIRFNEQDVRSMGRNAAGVKAITLGEEDQVVGMEIVE 707
Query: 699 GSYDIMLFSDSGKAVRFNENSVRAMGRSARGVIGMRLEKKQKVIALLVSNNQKQSVLTAT 758
++++ + +G R + R R +G+ + K + + S ++ ++ T
Sbjct: 708 EDVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKLVAVKSVTGEEDIMLIT 767
Query: 759 ENGYGKRTLIKEYTKHNRGTKGIISIK 785
G R + + ++ R T+G+ I+
Sbjct: 768 AAGVIIRMPVDQISQMGRNTQGVRLIR 794
Score = 753 (270.1 bits), Expect = 2.0e-73, P = 2.0e-73
Identities = 164/418 (39%), Positives = 257/418 (61%)
Query: 435 SKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVIDLTDILS 494
SK I+K + + LS+ QAQ IL M LQRLT +E++KI +Y++++K + +L IL+
Sbjct: 401 SKTAEIAKQGLMERFGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILA 460
Query: 495 NSKRXXXXXXXXXXXXKNKYGSHKKNIRRSEIILNAINP-STEDLIASQDMVITLSNLGY 553
+ ++ K ++ RR+EI + + EDLI Q++ ITL++ GY
Sbjct: 461 DEEKVLEIIREELTEVKERFNDK----RRTEITIGGMESIEDEDLIPEQNIAITLTHNGY 516
Query: 554 IKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKVWQIP 613
IK P S Y+ Q RGGRG + M T D+D++ L +THD+IL F+N G++Y K ++IP
Sbjct: 517 IKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIP 576
Query: 614 QGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFS 673
+ SR ++G PIIN+ + E I I+P+ R+F + ++F +T GI K+T LS+F+
Sbjct: 577 EYSRTAKGIPIINLLGVDKGEWINAIIPI----REFGDDEFLFFTTKQGISKRTPLSSFA 632
Query: 674 NPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAMGRSARGVIGM 733
N R +G+IA++L ED +I LT G DI++ + +G +RFNE VR+MGR+A GV +
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGRNAAGVKAI 692
Query: 734 RLEKKQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKV 793
L ++ +V+ + + + +VL T+NGYGKRT I EY +RG KG+ + +NGK+
Sbjct: 693 TLGEEDQVVGMEIVE-EDVNVLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKNGKL 751
Query: 794 VAATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILITVENKSKLCGVQRLCK 851
VA V +IMLIT G++IR V +I +MGR+TQGV LI +E++ ++ V + K
Sbjct: 752 VAVKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQK 809
>UNIPROTKB|P05653 [details] [associations]
symbol:gyrA "DNA gyrase subunit A" species:224308 "Bacillus
subtilis subsp. subtilis str. 168" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01897 InterPro:IPR002205 InterPro:IPR005743
InterPro:IPR006691 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 Pfam:PF03989 SMART:SM00434 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 EMBL:AL009126
GenomeReviews:AL009126_GR Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0009295 EMBL:D26185 EMBL:X02369 GO:GO:0006265 eggNOG:COG0188
HOGENOM:HOG000076278 KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 OMA:IAQEDVV TIGRFAMs:TIGR01063 PIR:F22930
RefSeq:NP_387888.1 ProteinModelPortal:P05653 SMR:P05653
IntAct:P05653 EnsemblBacteria:EBBACT00000002843 GeneID:940002
KEGG:bsu:BSU00070 PATRIC:18971463 GenoList:BSU00070
ProtClustDB:PRK05560 BioCyc:BSUB:BSU00070-MONOMER BindingDB:P05653
ChEMBL:CHEMBL4216 Uniprot:P05653
Length = 821
Score = 1316 (468.3 bits), Expect = 2.6e-134, P = 2.6e-134
Identities = 304/824 (36%), Positives = 484/824 (58%)
Query: 3 QFAKEVISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRP 62
Q +V I + +EM S+LDYAMSVIV RALPDVRDGLKPVHRR+L+AM+++ ++P
Sbjct: 4 QNTPQVREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKP 63
Query: 63 FVKCARVVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRY 122
+ K AR+VGE +GKYHPHGD ++Y+++VRMAQ F+ R LVDG GNFGS+DGDSAAAMRY
Sbjct: 64 YKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRY 123
Query: 123 TECRLNKISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNI 182
TE R++KIS E+L D+ K+TID+ NYDG E+EP V+P+R PNLL+NG++GIAVGMATNI
Sbjct: 124 TEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNI 183
Query: 183 PPHNLTEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVII 242
PPH L E+IDGVL V NP+ +I +L+++IP PDFPTAG I G S + Y +G+G + I
Sbjct: 184 PPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITI 243
Query: 243 RAKTHIEEFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMR 302
RAK IE+ + + II+ ELPYQVNK L+EKI+ LV++KK+E I++LRDESD++GMR
Sbjct: 244 RAKAEIEQTS-SGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMR 302
Query: 303 IVIELKRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVI 362
IVIE++R+ ++LN LYKQT LQ +FG+N+LALV+GQPK+L LK+ L +++ H+K VI
Sbjct: 303 IVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQPKVLTLKQCLEHYLDHQKVVI 362
Query: 363 KRRTIFELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPD--- 419
+RRT +ELRKA AHILEGL +AL ++D I +IR++ T + A+ +IE ++L +
Sbjct: 363 RRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEIARTGLIEQ-FSLTEKQA 421
Query: 420 -------VSKIIGFNKKN----YNTISK-INNISKLQNNDMYKLSDIQAQEILKMPLQRL 467
+ ++ G ++ Y ++ K I + + N+ YK+ +I +E+ ++ +R
Sbjct: 422 QAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANE-YKVLEIIREELTEIK-ERF 479
Query: 468 TNMEQKKIINKYENVIKKVIDLTDILSNSKRXXXXXXXXXXXXKNKYGSHKKNIRRSEII 527
+ + +I+ I+ DL + N + Y S K+ + + +
Sbjct: 480 NDERRTEIVTSGLETIEDE-DLIE-RENIVVTLTHNGYVKRLPASTYRSQKRGGKGVQGM 537
Query: 528 LNAINPSTEDLIASQ--DMVITLSNLGYI---KSQPISEYRAQKRGGRGKKAMMTKDEDW 582
+ E LI++ D ++ SN G + K I EY +G + + +W
Sbjct: 538 GTNEDDFVEHLISTSTHDTILFFSNKGKVYRAKGYEIPEYGRTAKGIPIINLLEVEKGEW 597
Query: 583 INQLFIANTHDYILCFSNYGRLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPL 642
IN + + L + K + Q + N R +I + SL+ +++ +
Sbjct: 598 INAIIPVTEFNAELYLFFTTKHGVSKRTSLSQFA-NIRNNGLIAL-SLREDDELMGVRLT 655
Query: 643 SNNKRDFPKNNYVFMSTSLGIVKKTLLSNFSNPRKS--GIIAVNLSNEDFLIGAALTDGS 700
K+ + + T G++ + ++ ++ G+ + L+++D ++G + +
Sbjct: 656 DGTKQ-------IIIGTKNGLLIRFPETDVREMGRTAAGVKGITLTDDDVVVGMEILEEE 708
Query: 701 YDIMLFSDSGKAVRFNENSVRAMGRSARGVIGMRLEKKQKVIALLVSNNQKQSVLTATEN 760
+++ ++ G R R R +G+ ++ + + + + ++ ++ T +
Sbjct: 709 SHVLIVTEKGYGKRTPAEEYRTQSRGGKGLKTAKITENNGQLVAVKATKGEEDLMIITAS 768
Query: 761 GYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLVNRYHE 804
G R I + + R T+G+ I+ + V LV + E
Sbjct: 769 GVLIRMDINDISITGRVTQGVRLIRMAEEE-HVATVALVEKNEE 811
Score = 713 (256.0 bits), Expect = 3.8e-69, P = 3.8e-69
Identities = 151/401 (37%), Positives = 242/401 (60%)
Query: 447 DMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVIDLTDILSNSKRXXXXXXXX 506
+ + L++ QAQ IL M LQRLT +E++KI +Y++++K + +L DIL+N +
Sbjct: 412 EQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKVLEIIREE 471
Query: 507 XXXXKNKYGSHKKNIRRSEIILNAINP-STEDLIASQDMVITLSNLGYIKSQPISEYRAQ 565
K ++ RR+EI+ + + EDLI +++V+TL++ GY+K P S YR+Q
Sbjct: 472 LTEIKERFNDE----RRTEIVTSGLETIEDEDLIERENIVVTLTHNGYVKRLPASTYRSQ 527
Query: 566 KRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKVWQIPQGSRNSRGKPII 625
KRGG+G + M T ++D++ L +THD IL FSN G++Y K ++IP+ R ++G PII
Sbjct: 528 KRGGKGVQGMGTNEDDFVEHLISTSTHDTILFFSNKGKVYRAKGYEIPEYGRTAKGIPII 587
Query: 626 NMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFSNPRKSGIIAVNL 685
N+ ++ E I I+P++ +F Y+F +T G+ K+T LS F+N R +G+IA++L
Sbjct: 588 NLLEVEKGEWINAIIPVT----EFNAELYLFFTTKHGVSKRTSLSQFANIRNNGLIALSL 643
Query: 686 SNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAMGRSARGVIGMRLEKKQKVIALL 745
+D L+G LTDG+ I++ + +G +RF E VR MGR+A GV G+ L V+ +
Sbjct: 644 REDDELMGVRLTDGTKQIIIGTKNGLLIRFPETDVREMGRTAAGVKGITLTDDDVVVGME 703
Query: 746 VSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLVNRYHEI 805
+ + VL TE GYGKRT +EY +RG KG+ + K + NG++VA ++
Sbjct: 704 ILEEESH-VLIVTEKGYGKRTPAEEYRTQSRGGKGLKTAKITENNGQLVAVKATKGEEDL 762
Query: 806 MLITTGGILIRTRVSEIRKMGRSTQGVILITVENKSKLCGV 846
M+IT G+LIR +++I GR TQGV LI + + + V
Sbjct: 763 MIITASGVLIRMDINDISITGRVTQGVRLIRMAEEEHVATV 803
Score = 180 (68.4 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 59/234 (25%), Positives = 122/234 (52%)
Query: 651 KNNYVFMSTSLGIVKKTLLSNFSNPRKSGIIAVNL-SNEDFLIGAALTDGSYD-IMLFSD 708
+ N V T G VK+ S + + ++ G + +NED + ++ ++D I+ FS+
Sbjct: 503 RENIVVTLTHNGYVKRLPASTYRSQKRGGKGVQGMGTNEDDFVEHLISTSTHDTILFFSN 562
Query: 709 SGKAVRFNENSVRAMGRSARGV--IGM-RLEKKQKVIALL-VSN-NQKQSVLTATENGYG 763
GK R + GR+A+G+ I + +EK + + A++ V+ N + + T++G
Sbjct: 563 KGKVYRAKGYEIPEYGRTAKGIPIINLLEVEKGEWINAIIPVTEFNAELYLFFTTKHGVS 622
Query: 764 KRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVSEIR 823
KRT + ++ N G+I++ + + +++ L + +I++ T G+LIR +++R
Sbjct: 623 KRTSLSQFA--NIRNNGLIALSL-REDDELMGVRLTDGTKQIIIGTKNGLLIRFPETDVR 679
Query: 824 KMGRSTQGVILITVENKSKLCGVQRLCKITMIKKYIPVITIDGPTASGKGTVAQ 877
+MGR+ GV IT+ + + G++ L + + ++ ++T G GK T A+
Sbjct: 680 EMGRTAAGVKGITLTDDDVVVGMEILEE----ESHVLIVTEKG---YGKRTPAE 726
>TAIR|locus:2075765 [details] [associations]
symbol:GYRA "DNA GYRASE A" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=ISS] [GO:0003916 "DNA topoisomerase
activity" evidence=IEA;IGI] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA;IBA] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0006200 "ATP catabolic process"
evidence=IBA] [GO:0006259 "DNA metabolic process" evidence=IEA]
[GO:0006261 "DNA-dependent DNA replication" evidence=RCA;IBA]
[GO:0006265 "DNA topological change" evidence=IEA;IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=IBA] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0009295 "nucleoid" evidence=IDA] [GO:0016592 "mediator complex"
evidence=IDA] [GO:0009220 "pyrimidine ribonucleotide biosynthetic
process" evidence=RCA] InterPro:IPR002205 InterPro:IPR005743
InterPro:IPR006691 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 Pfam:PF03989 SMART:SM00434 GO:GO:0005739 GO:GO:0005524
GO:GO:0009507 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005694
GO:GO:0007059 GO:GO:0006355 GO:GO:0006351 EMBL:AC011560
EMBL:AC011708 GO:GO:0006261 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0009330 GO:GO:0009295 GO:GO:0016592 GO:GO:0006265
eggNOG:COG0188 HOGENOM:HOG000076278 KO:K02469 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 IPI:IPI00544444
RefSeq:NP_187680.2 UniGene:At.39883 ProteinModelPortal:Q9CAF6
SMR:Q9CAF6 IntAct:Q9CAF6 STRING:Q9CAF6 PaxDb:Q9CAF6 PRIDE:Q9CAF6
EnsemblPlants:AT3G10690.1 GeneID:820238 KEGG:ath:AT3G10690
GeneFarm:2654 TAIR:At3g10690 InParanoid:Q9CAF6 OMA:IAQEDVV
PhylomeDB:Q9CAF6 ProtClustDB:CLSN2690844 Genevestigator:Q9CAF6
GermOnline:AT3G10690 TIGRFAMs:TIGR01063 Uniprot:Q9CAF6
Length = 950
Score = 1225 (436.3 bits), Expect = 9.7e-133, Sum P(2) = 9.7e-133
Identities = 239/497 (48%), Positives = 351/497 (70%)
Query: 8 VISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCA 67
++ L +E +SY+ YA+SV++GRALPDVRDGLKPVHRR+LFAMHE+ +P+ KCA
Sbjct: 101 IVPFELHKEATESYMSYALSVLLGRALPDVRDGLKPVHRRILFAMHELGMSSKKPYKKCA 160
Query: 68 RVVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTECRL 127
RVVGE +GK+HPHGD ++YD+LVRMAQSFSLRC L+ G GNFGSID D AAMRYTECRL
Sbjct: 161 RVVGEVLGKFHPHGDTAVYDSLVRMAQSFSLRCPLIQGHGNFGSIDADPPAAMRYTECRL 220
Query: 128 NKISNELLI-DLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHN 186
+ ++ +L+ DLD++T+DF++N+D +KEP+VLP R+P LL+NG+SGIAVGMATNIPPHN
Sbjct: 221 DPLAEAVLLSDLDQDTVDFVANFDNSQKEPAVLPARLPALLLNGASGIAVGMATNIPPHN 280
Query: 187 LTEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRAKT 246
L E++D + ++HNPE ++ +L++ +PAPDFPT GII G V D Y TG+GRV++R K
Sbjct: 281 LGELVDVLCALIHNPEATLQELLEYMPAPDFPTGGIIMGNLGVLDAYRTGRGRVVVRGKA 340
Query: 247 HIEEFN-RENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVI 305
+E + + R A+II E+PYQ NK +L++KI++LV+ K LE IS++RDESD++GMR+VI
Sbjct: 341 EVELLDPKTKRNAVIITEIPYQTNKATLVQKIAELVENKTLEGISDIRDESDRNGMRVVI 400
Query: 306 ELKRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVIKRR 365
ELKR P +VLN LY+ T LQ++F NM+ + +G+PKL+ LKE+L FI R V++RR
Sbjct: 401 ELKRGGDPALVLNNLYRHTALQSSFSCNMVGICDGEPKLMGLKELLQAFIDFRCSVVERR 460
Query: 366 TIFELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIG 425
F+L A++ HI+EG+ + L N+D I++I S+ A ++S + G
Sbjct: 461 ARFKLSHAQQRKHIIEGIVVGLDNVDEVIELITKASSHSSA-TAALQSEY---------G 510
Query: 426 FNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKK 485
++K I +I + +L + K +D ++ + +++T +EQ +++ N++K
Sbjct: 511 LSEKQAEAILEIT-LRRLTALERKKFTD-ESSSLT----EQITKLEQ--LLSTRTNILKL 562
Query: 486 V----IDLTDILSNSKR 498
+ I+L D S+ +R
Sbjct: 563 IEQEAIELKDRFSSPRR 579
Score = 375 (137.1 bits), Expect = 1.9e-30, P = 1.9e-30
Identities = 107/405 (26%), Positives = 201/405 (49%)
Query: 401 STPQEAKNKIIES-TWNLPDVSKIIGFNKKNYNTISKINNISKLQNNDMYKLSDIQAQEI 459
S Q+ K+ IIE L +V ++I K S + + LQ+ Y LS+ QA+ I
Sbjct: 466 SHAQQRKH-IIEGIVVGLDNVDEVIELITK---ASSHSSATAALQSE--YGLSEKQAEAI 519
Query: 460 LKMPLQRLTNMEQKKIINKYENVIKKVIDLTDILSNSKRXXXXXXXXXXXXKNKYGSHKK 519
L++ L+RLT +E+KK ++ ++ +++ L +LS K+++ S ++
Sbjct: 520 LEITLRRLTALERKKFTDESSSLTEQITKLEQLLSTRTNILKLIEQEAIELKDRFSSPRR 579
Query: 520 NIRRSEIILNAINPSTEDLIASQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKD 579
++ ++ + D+I +++M++ +S GY+K + Q RG GK +
Sbjct: 580 SMLEDS---DSGDLEDIDVIPNEEMLMAVSEKGYVKRMKADTFNLQHRGTIGKSVGKLRV 636
Query: 580 EDWINQLFIANTHDYILCFSNYGRLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVI 639
+D ++ + + HD++L FS+ G +Y + ++IP+ SRN+ G P++ + S+ E++T I
Sbjct: 637 DDAMSDFLVCHAHDHVLFFSDRGIVYSTRAYKIPECSRNAAGTPLVQILSMSEGERVTSI 696
Query: 640 LPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFSNPRKSGIIAVNLSNEDFLIGAALTDG 699
+P+S +F ++ Y+ M T G +KK L FS R +GIIA+ L++ D L
Sbjct: 697 VPVS----EFAEDRYLLMLTVNGCIKKVSLKLFSGIRSTGIIAIQLNSGDELKWVRCCSS 752
Query: 700 SYDIMLFSDSGKAVRFNENSVRAMGRSARGVIGMRLEKKQKVIALLV------------- 746
+ + S +G + VR + R+ +GV MRL+ + K+ ++ +
Sbjct: 753 DDLVAMASQNGMVALSTCDGVRTLSRNTKGVTAMRLKNEDKIASMDIIPASLRKDMEEKS 812
Query: 747 --SNNQKQS----VLTATENGYGKRTLIKEYTKHNRGTKGIISIK 785
++ KQS +L ENGYGKR + + + G+ K
Sbjct: 813 EDASLVKQSTGPWLLFVCENGYGKRVPLSSFRRSRLNRVGLSGYK 857
Score = 97 (39.2 bits), Expect = 9.7e-133, Sum P(2) = 9.7e-133
Identities = 38/171 (22%), Positives = 79/171 (46%)
Query: 683 VNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRF-NENSVRAMGRSARGVIGMRLEKKQKV 741
V +++++ ++ + DG + + A+R NE+ + +M + +E+K +
Sbjct: 756 VAMASQNGMVALSTCDGVRTLSRNTKGVTAMRLKNEDKIASMDIIPAS-LRKDMEEKSED 814
Query: 742 IALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLVNR 801
A LV + +L ENGYGKR + + + G+ K + + +AA V
Sbjct: 815 -ASLVKQSTGPWLLFVCENGYGKRVPLSSFRRSRLNRVGLSGYKFAEDDR--LAAVFVVG 871
Query: 802 Y---------HEIMLITTGGILIRTRVSEIRKMGRSTQGVILITVENKSKL 843
Y +++L++ G + R +V +I R +GVIL+ +++ K+
Sbjct: 872 YSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQSRRARGVILMRLDHAGKI 922
Score = 91 (37.1 bits), Expect = 4.2e-132, Sum P(2) = 4.2e-132
Identities = 32/97 (32%), Positives = 47/97 (48%)
Query: 662 GIVKKTLLSNFSNPR--KSGIIAVNLSNED-----FLIGAALT-DGSYD--IMLFSDSGK 711
G K+ LS+F R + G+ + +D F++G +L DG D ++L S SG
Sbjct: 833 GYGKRVPLSSFRRSRLNRVGLSGYKFAEDDRLAAVFVVGYSLAEDGESDEQVVLVSQSGT 892
Query: 712 AVRFNENSVRAMGRSARGVIGMRLEKKQKV-IALLVS 747
R + R ARGVI MRL+ K+ A L+S
Sbjct: 893 VNRIKVRDISIQSRRARGVILMRLDHAGKIQSASLIS 929
Score = 91 (37.1 bits), Expect = 4.2e-132, Sum P(2) = 4.2e-132
Identities = 47/208 (22%), Positives = 96/208 (46%)
Query: 648 DFPKNNYVFMSTS-LGIVKKTLLSNFSNPRKSGII--AVNLSNEDFLIGAALTDGSYD-I 703
D N + M+ S G VK+ F N + G I +V D + L ++D +
Sbjct: 594 DVIPNEEMLMAVSEKGYVKRMKADTF-NLQHRGTIGKSVGKLRVDDAMSDFLVCHAHDHV 652
Query: 704 MLFSDSGKAVRFNENSVRAMGRSARG---VIGMRLEKKQKVIALL-VSN-NQKQSVLTAT 758
+ FSD G + R+A G V + + + ++V +++ VS + + +L T
Sbjct: 653 LFFSDRGIVYSTRAYKIPECSRNAAGTPLVQILSMSEGERVTSIVPVSEFAEDRYLLMLT 712
Query: 759 ENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTR 818
NG K+ +K ++ R T GII+I+ N + ++ + + + + G++ +
Sbjct: 713 VNGCIKKVSLKLFSGI-RST-GIIAIQLNSGD-ELKWVRCCSSDDLVAMASQNGMVALST 769
Query: 819 VSEIRKMGRSTQGVILITVENKSKLCGV 846
+R + R+T+GV + ++N+ K+ +
Sbjct: 770 CDGVRTLSRNTKGVTAMRLKNEDKIASM 797
Score = 51 (23.0 bits), Expect = 7.0e-128, Sum P(2) = 7.0e-128
Identities = 18/78 (23%), Positives = 33/78 (42%)
Query: 552 GYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIAN--------THDYILCFSNYGR 603
GY K P+S +R + G ++D + +F+ + + ++ S G
Sbjct: 833 GYGKRVPLSSFRRSRLNRVGLSGYKFAEDDRLAAVFVVGYSLAEDGESDEQVVLVSQSGT 892
Query: 604 LYWLKVWQIPQGSRNSRG 621
+ +KV I SR +RG
Sbjct: 893 VNRIKVRDISIQSRRARG 910
Score = 48 (22.0 bits), Expect = 1.5e-127, Sum P(2) = 1.5e-127
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 1148 ILSRDKAKRLASWLSLEKAMESGEIITGTINGKVKGGLTVLTNGLKA 1194
ILS + +R+ S + + + E ++ T+NG +K L +G+++
Sbjct: 684 ILSMSEGERVTSIVPVSEFAEDRYLLMLTVNGCIKKVSLKLFSGIRS 730
Score = 37 (18.1 bits), Expect = 2.1e-126, Sum P(2) = 2.1e-126
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 541 SQDMVITLSNLGYIKSQPISEYRAQKRGGRG 571
S + V+ +S G + + + Q R RG
Sbjct: 880 SDEQVVLVSQSGTVNRIKVRDISIQSRRARG 910
>UNIPROTKB|O67108 [details] [associations]
symbol:gyrA "DNA gyrase subunit A" species:224324 "Aquifex
aeolicus VF5" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01897 InterPro:IPR002205 InterPro:IPR005743
InterPro:IPR006691 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 Pfam:PF03989 SMART:SM00434 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0009295 EMBL:AE000657
GenomeReviews:AE000657_GR GO:GO:0006265 PIR:A70385
RefSeq:NP_213671.1 PDB:3NO0 PDBsum:3NO0 ProteinModelPortal:O67108
GeneID:1193742 KEGG:aae:aq_980 PATRIC:20959298 eggNOG:COG0188
HOGENOM:HOG000076278 KO:K02469 OMA:HRLEVIL ProtClustDB:CLSK2299574
BioCyc:AAEO224324:GJBH-704-MONOMER EvolutionaryTrace:O67108
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Uniprot:O67108
Length = 744
Score = 1115 (397.6 bits), Expect = 9.6e-129, Sum P(2) = 9.6e-129
Identities = 210/407 (51%), Positives = 307/407 (75%)
Query: 6 KEVISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVK 65
+ ++ I +EEE+ ++Y+DYAMSVIVGRA+PDVRDGLKPV RR+L++M+EM L ++PF K
Sbjct: 5 ENLVEIPIEEEVKQAYIDYAMSVIVGRAIPDVRDGLKPVQRRILYSMYEMGLLPDKPFKK 64
Query: 66 CARVVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTEC 125
AR+VGET+GKYHPHGD ++Y+ALVRMAQ F++R L+ GQGNFGSIDGD AA MRYTE
Sbjct: 65 SARIVGETLGKYHPHGDQAVYEALVRMAQDFTMRYPLIIGQGNFGSIDGDPAAQMRYTEA 124
Query: 126 RLNKISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPH 185
+L+ ++ E+L D+DK+T+DF N+D EP VLP++ PNLL NG+SGIAVG+AT+IPPH
Sbjct: 125 KLSPLAVEMLTDIDKDTVDFQPNFDDTLMEPEVLPSKFPNLLCNGTSGIAVGLATSIPPH 184
Query: 186 NLTEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRAK 245
NLTEV + ++ + NP+ S++++++I+ PDFPT G+I + V + Y TG+G + ++ K
Sbjct: 185 NLTEVGNALVKLAQNPQISVDEIMEILKGPDFPTGGVIENFAQVKEIYKTGRGIIKVKGK 244
Query: 246 THIEEFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVI 305
H+E+ + R I+I E+PYQVNK L++KI+ V+ K++ IS++RDE+DK G+RIV+
Sbjct: 245 AHVEKV-QGGRERIVITEIPYQVNKAELIKKIADNVRNGKIKEISDIRDETDKEGIRIVV 303
Query: 306 ELKRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVIKRR 365
ELKR+ E VL KLYK T L+ F +N++ L++ +PKL+++K +L FI HR EVI RR
Sbjct: 304 ELKRDAKGEEVLKKLYKYTPLEKGFPVNLVVLIDKEPKLVDIKTLLREFIKHRLEVILRR 363
Query: 366 TIFELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIE 412
+ + L+K ++ HI+EGL A+ ID+ I+ IR + EA+N ++E
Sbjct: 364 SKYFLKKVQDRLHIVEGLLKAINFIDDIIERIRRSKDASEARNYLME 410
Score = 175 (66.7 bits), Expect = 9.6e-129, Sum P(2) = 9.6e-129
Identities = 64/213 (30%), Positives = 98/213 (46%)
Query: 599 SNYGRLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMS 658
SN GR+YW+ Q QGS+ SLK++E+ ++ K F N + ++
Sbjct: 535 SNRGRVYWIAGSQALQGSK----------VSLKSREE-KIVGAFIREK--F--GNRLLLA 579
Query: 659 TSLGIVKKTLLSNFSNPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNEN 718
T G VKK L+ F + G+ + L+ D ++ A + I+LF+ G+ RF+
Sbjct: 580 TKKGYVKKIPLAEFEY-KAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVR 638
Query: 719 SVRAMGRSARGVIGMRLEKKQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGT 778
V ARGV G++LEK + L + N + +L T G K+ +E K NRG
Sbjct: 639 EVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPY-LLVITAKGRVKKISHEEIPKTNRGV 697
Query: 779 KGIISIKTNKRNGKVVAATLVNRYHEI-MLITT 810
KG T K L+ E+ +LITT
Sbjct: 698 KG-----TEVSGTKDTLVDLIPIKEEVELLITT 725
Score = 117 (46.2 bits), Expect = 1.3e-122, Sum P(2) = 1.3e-122
Identities = 69/370 (18%), Positives = 153/370 (41%)
Query: 422 KIIGFNKKNYNTISKINNISKLQNNDM--YKLSDIQAQEILKMPLQRLTNMEQKKIINKY 479
K I F I + + S+ +N M + LS+ QAQ +L + LQRLT++E++K++ +
Sbjct: 383 KAINFIDDIIERIRRSKDASEARNYLMEEFGLSEKQAQAVLDLRLQRLTSLEREKLLEEE 442
Query: 480 ENVIKKVIDLTDILSNSKRXXXXXXXXXXXXKNKYGSHK-------KNIRRSEIILNAIN 532
+ + +K+ ++++ KYG + K ++ I + +
Sbjct: 443 KELREKIEYYKKLVASEGERIKVFIEETEELVKKYGDKRRTFIGGVKEVKEGSITVAVLQ 502
Query: 533 PSTEDLIASQDMVITLSNLGYIKSQPISE--YRAQKRG------G----RGKKAMMTKDE 580
+ +I +++ + + + I P +E + RG G +G K + E
Sbjct: 503 DGS--IIPVEELPLEKAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKSRE 560
Query: 581 DWINQLFIANTH-DYILCFSNYGRLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVI 639
+ I FI + +L + G ++K + + ++G PII + + E +++
Sbjct: 561 EKIVGAFIREKFGNRLLLATKKG---YVKKIPLAEFEYKAQGMPIIKL--TEGDEVVSIA 615
Query: 640 LPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNF--SNPRKSGIIAVNLSNEDFLIGAALT 697
+ ++ + T G V + + S P G+ + L D G +
Sbjct: 616 SSVDET--------HILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIW 667
Query: 698 DGSYDIMLFSDSGKAVRFNENSVRAMGRSARGVIGMRLEKKQKVIALLVSNNQKQSVLTA 757
+G +++ + G+ + + + ++ RGV G + + + L+ ++ +L
Sbjct: 668 NGEPYLLVITAKGRVKKISHEEIP---KTNRGVKGTEVSGTKDTLVDLIPIKEEVELLIT 724
Query: 758 TENG---YGK 764
T+NG YG+
Sbjct: 725 TKNGKAFYGQ 734
Score = 90 (36.7 bits), Expect = 9.2e-120, Sum P(2) = 9.2e-120
Identities = 42/173 (24%), Positives = 76/173 (43%)
Query: 737 KKQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAA 796
+++K++ + +L AT+ GY K+ + E+ +G+ IK + + V A
Sbjct: 559 REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYK---AQGMPIIKLTEGDEVVSIA 615
Query: 797 TLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILITVENKSKLCGVQRLCKITMIK 856
+ V+ H I+L T G + R V E+ +GV I +E + G+ +I +
Sbjct: 616 SSVDETH-ILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGL----RIWNGE 670
Query: 857 KYIPVITIDGPTASGKGTVAQLVASKLGFHYLD-SGALYRLVTLSAINNNIQL 908
Y+ VIT G K + ++ + G + SG LV L I ++L
Sbjct: 671 PYLLVITAKGRVK--KISHEEIPKTNRGVKGTEVSGTKDTLVDLIPIKEEVEL 721
Score = 89 (36.4 bits), Expect = 1.2e-119, Sum P(2) = 1.2e-119
Identities = 44/171 (25%), Positives = 87/171 (50%)
Query: 552 GYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHD--YILCFSNYGRLYWLKV 609
GY+K P++E+ + +G K +T+ ++ ++ IA++ D +IL F+ GR+ V
Sbjct: 583 GYVKKIPLAEFEYKAQGMPIIK--LTEGDEVVS---IASSVDETHILLFTKKGRVARFSV 637
Query: 610 WQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLL 669
++P + +RG I + KN E T L + N + P Y+ + T+ G VKK +
Sbjct: 638 REVPPSTPGARGVQGIKLE--KNDE--TSGLRIWNGE---P---YLLVITAKGRVKK--I 685
Query: 670 SNFSNPRKS-GIIAVNLSN-EDFLIGAALTDGSYDIMLFSDSGKAVRFNEN 718
S+ P+ + G+ +S +D L+ ++++ + +GKA + +N
Sbjct: 686 SHEEIPKTNRGVKGTEVSGTKDTLVDLIPIKEEVELLITTKNGKAF-YGQN 735
Score = 68 (29.0 bits), Expect = 1.9e-117, Sum P(2) = 1.9e-117
Identities = 22/113 (19%), Positives = 48/113 (42%)
Query: 545 VITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRL 604
++ + G + + E G RG + + + D + L I N Y+L + GR+
Sbjct: 623 ILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYLLVITAKGRV 682
Query: 605 YWLKVWQIPQGSRNSRGKPIINMFS-----LKNKEKITVILPLSNNKRDFPKN 652
+ +IP+ +R +G + + KE++ +++ N K + +N
Sbjct: 683 KKISHEEIPKTNRGVKGTEVSGTKDTLVDLIPIKEEVELLITTKNGKAFYGQN 735
Score = 56 (24.8 bits), Expect = 5.4e-119, Sum P(3) = 5.4e-119
Identities = 24/79 (30%), Positives = 37/79 (46%)
Query: 1180 KVKGGLTVLTNGLKA--FLPGSLVDIRPVKDTTPFEGKTMDFKVIKLDRKRNNVVLSHRA 1237
KV+ L ++ LKA F+ + IR KD + E + + L K+ VL R
Sbjct: 370 KVQDRLHIVEGLLKAINFIDDIIERIRRSKDAS--EARNYLMEEFGLSEKQAQAVLDLR- 426
Query: 1238 VIEESMGEERQKLIETLKE 1256
++ ER+KL+E KE
Sbjct: 427 -LQRLTSLEREKLLEEEKE 444
Score = 44 (20.5 bits), Expect = 5.4e-119, Sum P(3) = 5.4e-119
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 1456 IHLSDLSWTDPGEEIIRNFKKGDEIEAIILSID 1488
I L++ + G II+ +GDE+ +I S+D
Sbjct: 588 IPLAEFEYKAQGMPIIK-LTEGDEVVSIASSVD 619
Score = 39 (18.8 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 109 FGSIDGDSAAAMRYTECRLNKISNELLIDLDKETIDFISNY 149
FG + + A + RL + E L++ +KE + I Y
Sbjct: 412 FGLSEKQAQAVLDLRLQRLTSLEREKLLEEEKELREKIEYY 452
Score = 37 (18.1 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 274 LEKISQLVKEKKLECISNLRDE 295
L++++ L +EK LE LR++
Sbjct: 427 LQRLTSLEREKLLEEEKELREK 448
Score = 37 (18.1 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 8/39 (20%), Positives = 16/39 (41%)
Query: 525 EIILNAINPSTEDLIASQDMVITLSNLGYIKSQPISEYR 563
+ + A+ +D ++I N G I P ++ R
Sbjct: 82 QAVYEALVRMAQDFTMRYPLIIGQGNFGSIDGDPAAQMR 120
>UNIPROTKB|Q3KMH3 [details] [associations]
symbol:gyrA_1 "DNA gyrase subunit A" species:315277
"Chlamydia trachomatis A/HAR-13" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
HAMAP:MF_01897 InterPro:IPR002205 InterPro:IPR005743
InterPro:IPR006691 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 Pfam:PF03989 SMART:SM00434 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0009295 EMBL:CP000051
GenomeReviews:CP000051_GR GO:GO:0006265 eggNOG:COG0188
HOGENOM:HOG000076278 KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 OMA:IAQEDVV TIGRFAMs:TIGR01063 ProtClustDB:PRK05560
RefSeq:YP_327997.1 ProteinModelPortal:Q3KMH3 STRING:Q3KMH3
GeneID:3687233 KEGG:cta:CTA_0207 PATRIC:32022280
BioCyc:CTRA315277:GI4C-249-MONOMER Uniprot:Q3KMH3
Length = 836
Score = 1135 (404.6 bits), Expect = 3.6e-127, Sum P(2) = 3.6e-127
Identities = 233/492 (47%), Positives = 328/492 (66%)
Query: 13 LEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGE 72
LEEEM +SYL Y+MSVI+ RALPD RDGLKP RR+L+AM ++N KCA++ G+
Sbjct: 13 LEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKHRKCAKICGD 72
Query: 73 TMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTECRLNKISN 132
T G YHPHG+ IY LVRMAQ +++R LVDGQGNFGSIDGD AAAMRYTE RL +
Sbjct: 73 TSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTEARLTHSAI 132
Query: 133 ELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVID 192
LL DLDK+T+D + NYD + EP V P++ PNLL NGSSGIAVGMATNIPPHNL E+I+
Sbjct: 133 FLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPPHNLGELIE 192
Query: 193 GVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRAKTHIEEFN 252
L VL N + SI D+++++P PDFPT GII G + YYTG+G++ +RA+ H+EE +
Sbjct: 193 ATLLVLANSQTSIEDILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRLRARMHVEENS 252
Query: 253 RENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVIELKRNEI 312
+ R II+ E+PY VNK L+E+I++L+ EK L IS++RDESDK G+R+V+ELK+ E
Sbjct: 253 DKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRVVLELKKGES 312
Query: 313 PEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVIKRRTIFELRK 372
E+V+N+LYK T +Q TFG NMLAL P+ +N+ ++ +I HR +VI+RRT +EL K
Sbjct: 313 SEVVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRMDVIQRRTRYELNK 372
Query: 373 AREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIGFNKKNYN 432
A AHILEG AL+ +D ++ IR +S + AK +++E ++ + + + Y
Sbjct: 373 AEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE-LFSFSEAQALAILELRLYQ 431
Query: 433 -TISKINNISKLQNNDMYKLS---DIQAQE-----ILKMPLQRLTNMEQKKIINKYENVI 483
T + + + K + + K++ + A+E I++ LQ L + + + E
Sbjct: 432 LTGLEADKVQKEYSELLEKITYYRKVLAEEELVKDIIREELQELHKVHKTPRRTRIEMDA 491
Query: 484 KKVIDLTDILSN 495
V D+ DI+S+
Sbjct: 492 GDVRDIEDIISD 503
Score = 674 (242.3 bits), Expect = 5.6e-65, P = 5.6e-65
Identities = 147/413 (35%), Positives = 243/413 (58%)
Query: 441 SKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVIDLTDILSNSKRXX 500
+K Q +++ S+ QA IL++ L +LT +E K+ +Y +++K+ +L+ +
Sbjct: 406 AKQQLVELFSFSEAQALAILELRLYQLTGLEADKVQKEYSELLEKITYYRKVLAEEE--- 462
Query: 501 XXXXXXXXXXKNKYGSHKKNIRRSEIILNAINP-STEDLIASQDMVITLSNLGYIKSQPI 559
+ + HK RR+ I ++A + ED+I+ + ++IT+S Y+K P+
Sbjct: 463 LVKDIIREELQELHKVHKTP-RRTRIEMDAGDVRDIEDIISDESVIITISGDDYVKRMPV 521
Query: 560 SEYRAQKRGGRGKKAM-MTKDEDWINQLFIANTHDYILCFSNYGRLYWLKVWQIPQGSRN 618
+R QKRGG+G M K D++ ++ A+T DY+L F+N+G+ YWLKVW++P+G R
Sbjct: 522 KVFREQKRGGQGVTGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWRLPEGERK 581
Query: 619 SRGKPIINMFS-LKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFSNPRK 677
++GKPIIN ++ E++ +L N KR F + Y+F++T G+VKK L F +PRK
Sbjct: 582 AKGKPIINFLEGIRPGEQVAAVL---NVKR-FEQGEYLFLATKKGVVKKVSLDAFGSPRK 637
Query: 678 SGIIAVNLSNEDFLIGAA-LTDGSYDIMLFSDSGKAVRFNENSVRAMGRSARGVIGMRLE 736
GI A+ + + D LI A + + +MLF+ G AVRF + VR MGR+ARGV G+ L+
Sbjct: 638 KGIRALEIDDGDELIAARHIANDEEKVMLFTRLGMAVRFPHDKVRPMGRAARGVRGVSLK 697
Query: 737 KKQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAA 796
+Q + + QSVL +NG+GKR+L+ ++ + NRG+ G+ SI N+RNG V+ A
Sbjct: 698 NEQDFVVSCQVVTEDQSVLVVCDNGFGKRSLVCDFRETNRGSVGVRSIVINQRNGDVLGA 757
Query: 797 TLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILITVENKSKLCGVQRL 849
V I+L++ G IR + ++R MGR+TQGV L+ + L +++L
Sbjct: 758 ISVTDCDSILLMSAQGQAIRINMQDVRVMGRATQGVRLVNLREGDTLVAMEKL 810
Score = 136 (52.9 bits), Expect = 3.6e-127, Sum P(2) = 3.6e-127
Identities = 55/215 (25%), Positives = 98/215 (45%)
Query: 552 GYIKSQPISEYRAQKRGGRGKKAMMTKDED-WINQLFIANTHDYILCFSNYGRLYWLKVW 610
G +K + + + ++ +G +A+ D D I IAN + ++ F+ G
Sbjct: 622 GVVKKVSLDAFGSPRK--KGIRALEIDDGDELIAARHIANDEEKVMLFTRLGMAVRFPHD 679
Query: 611 QI-PQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLL 669
++ P G R +RG + SLKN++ V + + V + G K++L+
Sbjct: 680 KVRPMG-RAARG---VRGVSLKNEQDFVVSCQVVTEDQS------VLVVCDNGFGKRSLV 729
Query: 670 SNFSNPRKSGI----IAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAMGR 725
+F + + I +N N D L ++TD I+L S G+A+R N VR MGR
Sbjct: 730 CDFRETNRGSVGVRSIVINQRNGDVLGAISVTDCD-SILLMSAQGQAIRINMQDVRVMGR 788
Query: 726 SARGVIGMRLEKKQKVIALLVSNNQKQSVLTATEN 760
+ +GV + L + ++A+ + +SV T EN
Sbjct: 789 ATQGVRLVNLREGDTLVAMEKLSINTESVETE-EN 822
>UNIPROTKB|O50510 [details] [associations]
symbol:O50510 "DNA gyrase-like protein" species:100226
"Streptomyces coelicolor A3(2)" [GO:0003918 "DNA topoisomerase type
II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR002205 InterPro:IPR006691 InterPro:IPR013758
InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989 SMART:SM00434
GO:GO:0005524 GO:GO:0005694 GO:GO:0007059 GO:GO:0006261
GenomeReviews:AL645882_GR Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0009295 GO:GO:0006265 HOGENOM:HOG000076278 KO:K02469
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
ProtClustDB:PRK05561 HSSP:P09097 EMBL:AL939125 PIR:T35872
RefSeq:NP_629959.1 ProteinModelPortal:O50510 GeneID:1101278
KEGG:sco:SCO5836 PATRIC:23741572 OMA:YSRALPD Uniprot:O50510
Length = 818
Score = 1060 (378.2 bits), Expect = 6.3e-125, Sum P(2) = 6.3e-125
Identities = 206/421 (48%), Positives = 291/421 (69%)
Query: 2 NQFAKEVISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNR 61
+ + + ++ I + +EM S+L+YA SVI RALPD RDGLKPVHRR+++ M+EM R
Sbjct: 13 DSYEERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMNEMGLRPER 72
Query: 62 PFVKCARVVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSA-AAM 120
+VKCARVVGE MGK HPHGD SIYDALVRMAQSFS+R LVDG GNFGS+ D AAM
Sbjct: 73 GYVKCARVVGEVMGKLHPHGDASIYDALVRMAQSFSMRVPLVDGHGNFGSLGNDDPPAAM 132
Query: 121 RYTECRLNKISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMAT 180
RYTECR+ + + + +D++T+DF NYDG+E+EP LP PNLL+NG+SGIAVGMAT
Sbjct: 133 RYTECRMAEAAGLMTESIDEDTVDFAPNYDGQEQEPVALPAAFPNLLVNGASGIAVGMAT 192
Query: 181 NIPPHNLTEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRV 240
N+PPHNL EVI +++ P ++ L+K +P PD PT G I GL + D Y TG+G
Sbjct: 193 NMPPHNLREVIAAARHLIRYPNADLDALMKHVPGPDLPTGGRIVGLPGIRDAYETGRGTF 252
Query: 241 IIRAKTHIEEFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKS- 299
IRA +E R +++ ELP+ V + ++ KI LV KK++ I++++D +D++
Sbjct: 253 KIRATVSVETVTAR-RKGLVVTELPFAVGPEKVISKIKDLVGAKKIQGIADVKDLTDRAH 311
Query: 300 GMRIVIELKRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRK 359
G+R+VIE+K +PE VL +LYK T ++ +FG+N +ALV+GQP L LKE+L ++ HR
Sbjct: 312 GLRLVIEIKNGFVPEAVLEQLYKLTAMEESFGINNVALVDGQPLTLGLKELLEVYLDHRF 371
Query: 360 EVIKRRTIFELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPD 419
V++RR+ F K R+ H++EGL AL +ID I++IRS+ +AK +++E ++L D
Sbjct: 372 TVVRRRSEFRRSKRRDRLHLVEGLLTALVDIDEVIRLIRSSENSAQAKQRLMER-FSLSD 430
Query: 420 V 420
V
Sbjct: 431 V 431
Score = 200 (75.5 bits), Expect = 6.3e-125, Sum P(2) = 6.3e-125
Identities = 91/416 (21%), Positives = 177/416 (42%)
Query: 390 IDNFIQIIRSTSTPQEAKNK----IIESTWN-LPDVSKIIGFNKKNYNTISKINNISKLQ 444
+D+ ++R S + +K + ++E L D+ ++I + + N+ +K +
Sbjct: 367 LDHRFTVVRRRSEFRRSKRRDRLHLVEGLLTALVDIDEVIRLIRSSENSAQ-----AKQR 421
Query: 445 NNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVIDLTDILSNSKRXXXXXX 504
+ + LSD+Q Q IL PL+RLT ++ ++ ++ + + ++ +LT IL +
Sbjct: 422 LMERFSLSDVQTQYILDTPLRRLTKYDRIELESEKDRLNAEIEELTRILDSDAELRKLVS 481
Query: 505 XXXXXXKNKYGSHKKNIRRSEIILNAINP-STEDL-IASQDMVITLSNLGYIKSQPISEY 562
K+G+ RR+ ++ ++ P + L +A + LS+ G + E
Sbjct: 482 AELAAVAKKFGTD----RRTTLLESSGAPVAAVPLQVADDPCRVLLSSTGLLARTANDEP 537
Query: 563 RAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKVWQIPQ-----GSR 617
+ G + K D I A + ++ GRL + V +PQ +
Sbjct: 538 LVTEAGAKRVK------HDLIVSAVPATARGEVGVVTSGGRLLRVNVVDLPQLPEAMPTP 591
Query: 618 N-SRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFSNPR 676
N + G P+ SL++ E + + L + P + + T G+VK+ + SN
Sbjct: 592 NLAGGAPLAEFVSLEDDEDVVCLTTLDESS---PG---LALGTEQGVVKRVVPDYPSN-- 643
Query: 677 KSGIIAVNLSNEDFLIGAA-LTDGSYDIMLFSDSGKAVRFNENSVRAMGRSARGVIGMRL 735
K + + L + D ++G L G D++ +D + +R+ + VR GR A GV G++L
Sbjct: 644 KDELEVITLKDGDRIVGGVELRTGDEDLVFITDDAQLLRYQASQVRPQGRPAGGVAGVKL 703
Query: 736 EKKQKVIALLVSNNQKQSVLTATENGYG----------KRTLIKEYTKHNRGTKGI 781
KVI+ + +V+ G K T +Y + R T G+
Sbjct: 704 ADGAKVISFTAVDPAADAVVFTVAGSRGTLDDSVQTTAKLTPFDQYPRKGRATGGV 759
Score = 85 (35.0 bits), Expect = 8.7e-113, Sum P(2) = 8.7e-113
Identities = 27/109 (24%), Positives = 50/109 (45%)
Query: 735 LEKKQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVV 794
LE + V+ L + + TE G KR ++ +Y N+ +I++K R V
Sbjct: 605 LEDDEDVVCLTTLDESSPGLALGTEQGVVKR-VVPDYPS-NKDELEVITLKDGDRI--VG 660
Query: 795 AATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILITVENKSKL 843
L +++ IT L+R + S++R GR GV + + + +K+
Sbjct: 661 GVELRTGDEDLVFITDDAQLLRYQASQVRPQGRPAGGVAGVKLADGAKV 709
Score = 46 (21.3 bits), Expect = 1.1e-108, Sum P(2) = 1.1e-108
Identities = 9/33 (27%), Positives = 20/33 (60%)
Query: 793 VVAATLVNRYHEIMLITTGGILIRTRVSEIRKM 825
+V+A E+ ++T+GG L+R V ++ ++
Sbjct: 552 IVSAVPATARGEVGVVTSGGRLLRVNVVDLPQL 584
>TIGR_CMR|SPO_0802 [details] [associations]
symbol:SPO_0802 "ribosomal protein S1" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006412 GO:GO:0003723 GO:GO:0005840
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HOGENOM:HOG000044052 KO:K02945
ProtClustDB:PRK06299 TIGRFAMs:TIGR00717 OMA:SRRYPQG
RefSeq:YP_166055.1 ProteinModelPortal:Q5LVA0 SMR:Q5LVA0
GeneID:3195039 KEGG:sil:SPO0802 PATRIC:23374881 Uniprot:Q5LVA0
Length = 558
Score = 1194 (425.4 bits), Expect = 2.2e-121, P = 2.2e-121
Identities = 238/559 (42%), Positives = 350/559 (62%)
Query: 1062 VVNQILDCFATLFKESLLRHDMRSGEVISAEVIGLDRNFVIINADLKSEAFIPIEEFKND 1121
+ N ++ F L ES G V+ +VI ++ II+ K E + ++EF N
Sbjct: 1 MANASMEEFEALLNESFEMDTPEEGSVVKGKVIAIEAGQAIIDVGYKMEGRVELKEFANP 60
Query: 1122 NGELEVKIGDFVSVAIESLENGFGDTILSRDKAKRLASWLSLEKAMESGEIITGTINGKV 1181
E+ IGD V V + + EN G+ ++SR+ A+R +W LEKA + + G I G+V
Sbjct: 61 GEAPEISIGDEVEVYLRAAENARGEAVISREMARREEAWDRLEKAYADDQRVEGAIFGRV 120
Query: 1182 KGGLTVLTNGLKAFLPGSLVDIRPVKDTTPFEGKTMDFKVIKLDRKRNNVVLSHRAVIEE 1241
KGG TV G AFLPGS VD+RPV+D P G F+++K+DR+R N+V+S RA++EE
Sbjct: 121 KGGFTVDLGGAVAFLPGSQVDVRPVRDAGPLMGLKQPFQILKMDRRRGNIVVSRRAILEE 180
Query: 1242 SMGEERQKLIETLKEGCTVKGVVKNITDYGAFIDLGGIDGLLHITDIAWRRVKHPSEILT 1301
S E+R ++I L EG TV GVVKNIT+YGAF+DLGG+DGLLH+TD+AWRRV HP+EIL
Sbjct: 181 SRAEQRAEVIGNLTEGQTVDGVVKNITEYGAFVDLGGVDGLLHVTDMAWRRVNHPNEILN 240
Query: 1302 IGQDISTKILKYDQEKNRVSLGMKQLGIDPWIGLSFRYPRGTRLLGKVTNLTDYGAFVEI 1361
IG+ + +++K +++ +R+SLGMKQL DPW + +YP + G+VTN+TDYGAFVE+
Sbjct: 241 IGETVKVQVIKINKDTHRISLGMKQLQEDPWDLVGAKYPLESVHTGRVTNITDYGAFVEL 300
Query: 1362 EKGIEGLVHISEMDWINKNVTPSKIVQLNDTVEIMILEINEERRRISLGMKQCKDNPWEN 1421
E G+EGLVH+SEM W KNV P KIV + VE+M+LEI+ +RR+SLG+KQ NPWE
Sbjct: 301 EPGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVMVLEIDGAKRRVSLGLKQTMRNPWEV 360
Query: 1422 FXXXXXXXXXXXXXXXXXTDFGIFIGLDGNIDGLIHLSDLSWTDPGEEIIRNFKKGDEIE 1481
F T+FG+FIGL G+IDG++HLSDLSW + GE+ I+N++KGD ++
Sbjct: 361 FAETHPEGTVVEGEVKNITEFGLFIGLPGDIDGMVHLSDLSWDERGEDAIQNYRKGDMVK 420
Query: 1482 AIILSIDVEKERISLGIKQLEGDPFNNYVNINDKGSLVNGIIKSIDTNKGAIIQLSNEVE 1541
A++ +D++KERISL IK + GD F V +GS++ + +I+ G ++ ++
Sbjct: 421 AVVSEVDIDKERISLSIKSVGGDKFAEAVGGVKRGSIITVNVTAIEDG-GIEVEYEG-MK 478
Query: 1542 GYLRISE--EDNKHEK--KLKIGENIDVLTVLIDHKTRYIQLSFXXXXXXXXXXLLTSIN 1597
++R S+ D ++ + +G+ +DV +D KTR + LS +
Sbjct: 479 SFIRRSDLSRDRADQRPERFSVGDKVDVRVTNVDSKTRRLGLSIKAREIAEEKEAVEQYG 538
Query: 1598 ANTISGTTNLGLILKAELE 1616
++ SG + LG IL A L+
Sbjct: 539 SSD-SGAS-LGDILGAALK 555
>UNIPROTKB|Q45066 [details] [associations]
symbol:parC "DNA topoisomerase 4 subunit A" species:224308
"Bacillus subtilis subsp. subtilis str. 168" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] InterPro:IPR002205 InterPro:IPR005741
InterPro:IPR005743 InterPro:IPR006691 InterPro:IPR013758
InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989 SMART:SM00434
GO:GO:0005524 GO:GO:0005737 GO:GO:0005694 GO:GO:0007059
GO:GO:0006261 EMBL:AL009126 GenomeReviews:AL009126_GR
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0009295 GO:GO:0006265
eggNOG:COG0188 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
TIGRFAMs:TIGR01063 EMBL:Z73234 EMBL:AF024713 PIR:B69637
RefSeq:NP_389692.2 ProteinModelPortal:Q45066 SMR:Q45066
PRIDE:Q45066 EnsemblBacteria:EBBACT00000001040 GeneID:937107
KEGG:bsu:BSU18100 PATRIC:18975451 GenoList:BSU18100
HOGENOM:HOG000076279 KO:K02621 ProtClustDB:PRK05561
BioCyc:BSUB:BSU18100-MONOMER ChEMBL:CHEMBL3487 HAMAP:MF_00937
TIGRFAMs:TIGR01061 Uniprot:Q45066
Length = 806
Score = 1159 (413.0 bits), Expect = 1.1e-117, P = 1.1e-117
Identities = 282/806 (34%), Positives = 453/806 (56%)
Query: 13 LEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGE 72
LEE + + Y+ +I RALPD RDGLKPV RR+L+AMH N +++ F K A+ VG
Sbjct: 12 LEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHTDGNTFDKNFRKAAKTVGN 71
Query: 73 TMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTECRLNKISN 132
+G YHPHGD S+Y+A+VRM+Q + +R L++ GN GSIDGD AAMRYTE RL+ I++
Sbjct: 72 VIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLSPIAS 131
Query: 133 ELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVID 192
ELL D+DK T++F+ N+D KEP VLP PNLL+NGS+GI+ G AT+IPPH+L EVID
Sbjct: 132 ELLRDIDKNTVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLGEVID 191
Query: 193 GVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRAKTHIEEFN 252
V+ + P CS+++L+++I PDFPT GII G+ + Y TGKG++IIR K IE
Sbjct: 192 AVIKRIQMPSCSVDELMEVIKGPDFPTGGIIQGVDGIRKAYETGKGKIIIRGKAEIETI- 250
Query: 253 RENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVIELKRNEI 312
R R I+I E+P++VNK +L++K+ + +KK+E IS +RDE+D++G+R+VIELK+
Sbjct: 251 RGGREQIVITEIPFEVNKANLVKKMDEFRIDKKVEGISEVRDETDRTGLRVVIELKKEAD 310
Query: 313 PEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVIKRRTIFELRK 372
+ +LN LYK T LQ T+ NM+A+ N +P L++L IL +I H+KEV+ R+++EL+K
Sbjct: 311 AKGILNFLYKNTDLQITYNFNMVAIHNRRPMLMSLPSILDAYIGHQKEVVTNRSVYELQK 370
Query: 373 AREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIES-TWNLPDVSKIIGFNKKNY 431
A++ HI+EGL AL+ +D I IRS+S ++AKN +I + P I+
Sbjct: 371 AKDRHHIVEGLMKALSILDEVIATIRSSSDKRDAKNNLIAKYEFTEPQAEAIVSLQLYRL 430
Query: 432 -NT-ISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVID- 488
NT I+ + ++ + +L I + + K L+ +TN K + KY + + VI+
Sbjct: 431 TNTDITALKEEAEELGKKIEELESILSND--KKLLKVITN-SLKALKKKYADTRRSVIEE 487
Query: 489 -LTDILSNSKRXXXXXXXXXXXXKNKYGSHKKNIRRSEIILNAINPSTEDL--------I 539
+ +I N + K+ Y K+ +RS N + +D +
Sbjct: 488 KIEEIKINLEVMVASEDVYVTVTKDGY--LKRTSQRSFAASNGQDFGMKDTDRMLHQFEM 545
Query: 540 ASQDMVITLSNLG---YIKSQPISEYRAQKRGGRGKKAM-MTKDEDWINQLFIA--NTHD 593
+ D+++ +N G Y + + R + G + + +DE + + I +
Sbjct: 546 NTTDVLLLFTNKGSYIYCPVHQLPDIRWKDMGQHFSNLITIDRDETIVKAIPIKEFDPSA 605
Query: 594 YILCFSNYGRLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNN 653
Y+L F+ G + K ++ K ++ + +LK ++++ + + ++N + +
Sbjct: 606 YLLFFTKNGMV---KKTELTHYKAQRYSKALVAL-NLKGEDEL-IDVHVTNGE------S 654
Query: 654 YVFMSTSLG--IVKKTLLSNFSNPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGK 711
+FM+T LG + N R +G+ +NL +DF++ + S I+LF+ G
Sbjct: 655 QIFMATHLGYGLWFGEDEVNVVGARAAGVKGINLKEDDFVVSGEILQQSDSIVLFTQRGA 714
Query: 712 AVRFNENSVRAMGRSARGVIGMRLEKKQ--KVIALLVSNNQKQSVLTATENGYGKRTLIK 769
R + + R+ RGV+ +R KK +V+AL + Q ++ TE G K K
Sbjct: 715 VKRMSLSEFEKTSRAKRGVVMLRELKKNPHRVVALFACGLE-QRLMAETEKGDRKELQTK 773
Query: 770 EYTKHNRGTKGIISIKTNKRNGKVVA 795
E ++R + G + +GKV A
Sbjct: 774 ELRTNDRYSNGSFFFD-EEESGKVTA 798
Score = 407 (148.3 bits), Expect = 4.3e-34, P = 4.3e-34
Identities = 125/458 (27%), Positives = 218/458 (47%)
Query: 398 RSTSTPQEAKNK--IIESTWN-LPDVSKIIGFNKKNYNTISKINN-ISKLQNNDMYKLSD 453
RS Q+AK++ I+E L + ++I + + + NN I+K Y+ ++
Sbjct: 363 RSVYELQKAKDRHHIVEGLMKALSILDEVIATIRSSSDKRDAKNNLIAK------YEFTE 416
Query: 454 IQAQEILKMPLQRLTNMEQKKIINKYENVIKKVIDLTDILSNSKRXXXXXXXXXXXXKNK 513
QA+ I+ + L RLTN + + + E + KK+ +L ILSN K+ K K
Sbjct: 417 PQAEAIVSLQLYRLTNTDITALKEEAEELGKKIEELESILSNDKKLLKVITNSLKALKKK 476
Query: 514 YGSHKKNIRRSEIILNAINPSTEDLIASQDMVITLSNLGYIKSQPISEYRAQKRGGRGKK 573
Y ++++ +I I + E ++AS+D+ +T++ GY+K + A G+
Sbjct: 477 YADTRRSVIEEKI--EEIKINLEVMVASEDVYVTVTKDGYLKRTSQRSFAASN----GQD 530
Query: 574 AMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKVWQIPQGSRNSRGKPIINMFSLKNK 633
M KD D + F NT D +L F+N G + V Q+P G+ N+ ++
Sbjct: 531 FGM-KDTDRMLHQFEMNTTDVLLLFTNKGSYIYCPVHQLPDIRWKDMGQHFSNLITIDRD 589
Query: 634 EKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFSNPRKS-GIIAVNLSNEDFLI 692
E I +P+ ++F + Y+ T G+VKKT L+++ R S ++A+NL ED LI
Sbjct: 590 ETIVKAIPI----KEFDPSAYLLFFTKNGMVKKTELTHYKAQRYSKALVALNLKGEDELI 645
Query: 693 GAALTDGSYDIMLFSDSGKAVRFNENSVRAMGRSARGVIGMRLEKKQKVIALLVSNNQKQ 752
+T+G I + + G + F E+ V +G A GV G+ L++ V++ + Q
Sbjct: 646 DVHVTNGESQIFMATHLGYGLWFGEDEVNVVGARAAGVKGINLKEDDFVVSGEILQ-QSD 704
Query: 753 SVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNG-KVVAATLVNRYHEIMLITTG 811
S++ T+ G KR + E+ K +R +G++ ++ K+N +VVA +M T
Sbjct: 705 SIVLFTQRGAVKRMSLSEFEKTSRAKRGVVMLRELKKNPHRVVALFACGLEQRLMAETEK 764
Query: 812 GILIRTRVSEIRKMGRSTQGVILITVENKSKLCGVQRL 849
G + E+R R + G E K+ V RL
Sbjct: 765 GDRKELQTKELRTNDRYSNGSFFFDEEESGKVTAVWRL 802
>TIGR_CMR|GSU_2603 [details] [associations]
symbol:GSU_2603 "ribosomal protein S1" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR000110
InterPro:IPR003029 Pfam:PF00575 PIRSF:PIRSF002111 PRINTS:PR00681
PROSITE:PS50126 GO:GO:0006412 GO:GO:0003723 GO:GO:0005840
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HOGENOM:HOG000044052 KO:K02945
ProtClustDB:PRK06299 TIGRFAMs:TIGR00717 RefSeq:NP_953648.2
GeneID:2686316 KEGG:gsu:GSU2603 PATRIC:22028059
BioCyc:GSUL243231:GH27-2582-MONOMER Uniprot:Q749Y9
Length = 586
Score = 1140 (406.4 bits), Expect = 1.2e-115, P = 1.2e-115
Identities = 233/556 (41%), Positives = 344/556 (61%)
Query: 1070 FATLFKESLLRHDMRSGEVISAEVIGLDRNFVIINADLKSEAFIPIEEFKNDNGELEVKI 1129
FA LF+ES+ H + GEV+ +V+ + ++V+++ KSE IP+EEF ++ G L V++
Sbjct: 33 FAELFQESIRHHHV--GEVVKGKVVHISNDYVLVDIGYKSEGSIPVEEFLDEAGNLTVQV 90
Query: 1130 GDFVSVAIESLENGFGDTILSRDKAKRLASWLSLEKAMESGEIITGTINGKVKGGLTVLT 1189
GD V E EN G +LS+ KA RL++W S++ A G I+ G I GKVKGGLTV
Sbjct: 91 GDEVKALFERKENQKGYAVLSKRKADRLSAWDSIDAAGGEGGIVEGKITGKVKGGLTV-D 149
Query: 1190 NGLKAFLPGSLVDIRPVKDTTPFEGKTMDFKVIKLDRKRNNVVLSHRAVIEESMGEERQK 1249
G++AFLP S VD+RP + + G T FKV+KL++KR N+VLS R ++EE R +
Sbjct: 150 IGVQAFLPASQVDLRPGGNLDKYIGVTDRFKVLKLNKKRGNIVLSRRVLLEEERAGVRTE 209
Query: 1250 LIETLKEGCTVKGVVKNITDYGAFIDLGGIDGLLHITDIAWRRVKHPSEILTIGQDISTK 1309
+ L EG T +GVVKNITDYGAF+D+GG+DGLLH+TD++W R+ HPSE+L G +S K
Sbjct: 210 TLANLAEGQTREGVVKNITDYGAFVDIGGVDGLLHVTDMSWGRLGHPSEMLKPGDKLSVK 269
Query: 1310 ILKYDQEKNRVSLGMKQLGIDPWIGLSFRYPRGTRLLGKVTNLTDYGAFVEIEKGIEGLV 1369
ILKYDQEK ++SLG+KQ+ DPW+ + ++ G R+ G+V ++TDYGAFV +++G+EGLV
Sbjct: 270 ILKYDQEKGKISLGLKQITPDPWLAVEQKFQVGDRVSGRVVSMTDYGAFVALDEGVEGLV 329
Query: 1370 HISEMDWINKNVTPSKIVQLNDTVEIMILEINEERRRISLGMKQCKDNPWENFXXXXXXX 1429
H+SEM W + PS ++ + D VE ++L I+ RRISLG+KQ + NPW
Sbjct: 330 HVSEMSWTKRLRHPSDLLTVGDEVETVVLGIDTGNRRISLGLKQAQANPWTQLEEKYPVG 389
Query: 1430 XXXXXXXXXXTDFGIFIGLDGNIDGLIHLSDLSWTD----PGEEIIRNFKKGDEIEAIIL 1485
TDFG+FIG+D IDGL+H+SD+SWT PGE + KG ++A++L
Sbjct: 390 TKLEGQIKSITDFGVFIGVDEGIDGLVHVSDISWTKRIKHPGEV----YAKGQTVQAVVL 445
Query: 1486 SIDVEKERISLGIKQLEGDPFNNYVNINDKGSLVNGIIKSIDTNKGAIIQLSNEVEGYLR 1545
++D E ER+SLGIKQL DP++ G+ V G + S+ T+ G +++ +EG +
Sbjct: 446 NVDAENERLSLGIKQLTPDPWSVIPATYRPGTRVRGKVTSV-TDFGVFLEIEEGIEGLVH 504
Query: 1546 ISEEDNKHEKKLK----IGENIDVLTVLIDHKTRYIQLSFXXXXXXXXXXLLTSINANTI 1601
+SE + K +G+ +D + + +D + I LS L S +
Sbjct: 505 VSELSREKVASPKDFASVGDELDAVVLSVDDVEKKIALSVKALQAAAEKAELESYMQDRG 564
Query: 1602 SGTTNLGLILKAELEK 1617
T+NLG +L+ + K
Sbjct: 565 EATSNLGALLREGMRK 580
>TIGR_CMR|SPO_0726 [details] [associations]
symbol:SPO_0726 "DNA topoisomerase IV, A subunit"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009340 "DNA
topoisomerase IV complex" evidence=ISS] InterPro:IPR002205
InterPro:IPR006691 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989 SMART:SM00434
GO:GO:0005524 GO:GO:0005694 EMBL:CP000031 GenomeReviews:CP000031_GR
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10 KO:K02621
ProtClustDB:PRK05561 HOGENOM:HOG000076277 RefSeq:YP_165980.1
ProteinModelPortal:Q5LVH5 GeneID:3193734 KEGG:sil:SPO0726
PATRIC:23374725 OMA:KYKDGGL Uniprot:Q5LVH5
Length = 782
Score = 982 (350.7 bits), Expect = 1.6e-99, Sum P(2) = 1.6e-99
Identities = 209/554 (37%), Positives = 331/554 (59%)
Query: 9 ISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCAR 68
+S L + + YL YA+S I+ RALPD RDGLKPVHRR+L+AM E+ + F K A+
Sbjct: 19 VSEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMRELRLSSSGGFRKSAK 78
Query: 69 VVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTECRLN 128
+ G+ MG YHPHGD +IYDA+ R+AQ F++R LVDGQGNFG+IDGD+ AA RYTE R+
Sbjct: 79 ISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARMT 138
Query: 129 KISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLT 188
++ LL L+++ +DF NYDG EP VLP + PNLL NGSSGIAVGMATNIPPHN+
Sbjct: 139 IVAEALLDGLNEDAVDFRDNYDGTLTEPVVLPAQFPNLLANGSSGIAVGMATNIPPHNIA 198
Query: 189 EVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGL-SSVHDGYYTGKGRVIIRAKTH 247
E+ D L+++ P+ + L+ +P PDFPT GII S+ Y TG+G +R K
Sbjct: 199 ELCDACLHLIKTPDARDDTLLNYVPGPDFPTGGIIVEPPESIAQAYRTGRGSFRLRCKYE 258
Query: 248 IEEFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVIEL 307
+E+ R + I++ E+PYQV K L+EK++++++ KK+ ++++RDES +R+++E
Sbjct: 259 VEDLGR-GQWQIVVTEIPYQVQKSKLIEKLAEVIQTKKVPILADVRDES-ADDIRLILEP 316
Query: 308 K-RNEIPEIVLNKLYKQTQLQNTFGMNMLALVNG-QPKLLNLKEILYYFILHRKEVIKRR 365
+ +N PE+++ LY+ + L+ F +NM L++G PK+ ++KE+L F+ HR+EV+ RR
Sbjct: 317 RTKNVDPEVLMGMLYRNSDLEVRFSLNMNVLIDGVTPKVCSMKEVLRAFLDHRQEVLLRR 376
Query: 366 TIFELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIG 425
+ L K +LEG IA N+D I IIR P+ A ++ W + D + +
Sbjct: 377 SRHRLGKIDHRLEVLEGFIIAFLNLDRVIDIIRYDEDPKAA---LMREEWGI-DHPRAL- 431
Query: 426 FNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKK 485
N+ +Y +S +LS++QA+ IL M L+ L +E+ ++I + + ++ +
Sbjct: 432 -NEADY--------VSPAPGEG--ELSEVQAEAILNMRLRSLRRLEEMELIRERDALMAE 480
Query: 486 VIDLTDILSNSKRXXXXXXXXXXXXKNKYGSH-KKNIRRSEII-LNAINP-STEDLIASQ 542
++ D+L++ K +G RR+ + E +I +
Sbjct: 481 RAEIEDLLADPALQWARISDQLKETKKTFGKDFPGGARRTRFAEAGEVEEVPLEAMIERE 540
Query: 543 DMVITLSNLGYIKS 556
+ + S +G++++
Sbjct: 541 PITVVCSQMGWVRA 554
Score = 133 (51.9 bits), Expect = 0.00015, P = 0.00015
Identities = 64/293 (21%), Positives = 132/293 (45%)
Query: 450 KLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVIDLTDILSNSKRXXXXXXXXXXX 509
+LS++QA+ IL M L+ L +E+ ++I + + ++ + ++ D+L++
Sbjct: 445 ELSEVQAEAILNMRLRSLRRLEEMELIRERDALMAERAEIEDLLADPALQWARISDQLKE 504
Query: 510 XKNKYGSH-KKNIRRSEII-LNAINP-STEDLIASQDMVITLSNLGYIKSQPISEYRAQK 566
K +G RR+ + E +I + + + S +G++++ ++ +
Sbjct: 505 TKKTFGKDFPGGARRTRFAEAGEVEEVPLEAMIEREPITVVCSQMGWVRA--MTGHIDLT 562
Query: 567 RGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKVWQIPQGSRNSRGKPIIN 626
R + KD D +F A T D +L F++ GR Y + +P G G+P+
Sbjct: 563 R------ELKFKDGDGPRFIFHAETTDKLLVFASNGRFYTIGAANLPGG--RGMGEPLRL 614
Query: 627 MFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLG--IVKKTLLSNFSNPRKSGIIAVN 684
M L N+ +I IL P+ + ST+ +V +T + + R +G +N
Sbjct: 615 MVDLPNEAEIVDILIHQ------PERKLLVASTAGNGFVVPETEV--VAQTR-TGKQVLN 665
Query: 685 LSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAMGRSARGVIGMRLEK 737
+ +++ + G + + + S +GK + F + + MGR G+RL+K
Sbjct: 666 VRDDERALICVPVAGDH-VAVVSQNGKFLVFPLDEMPEMGRGK----GVRLQK 713
Score = 42 (19.8 bits), Expect = 1.6e-99, Sum P(2) = 1.6e-99
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 1466 PGEEIIRNFKKGDEIEAIILSIDVEKERISLGIKQL 1501
PG F + E+E + L +E+E I++ Q+
Sbjct: 514 PGGARRTRFAEAGEVEEVPLEAMIEREPITVVCSQM 549
>UNIPROTKB|Q89K54 [details] [associations]
symbol:gyrA "Topoisomerase II" species:224911
"Bradyrhizobium japonicum USDA 110" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR002205 InterPro:IPR005742 InterPro:IPR006691
InterPro:IPR013758 InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989
SMART:SM00434 GO:GO:0005524 GO:GO:0005694 GO:GO:0007059
GO:GO:0006261 Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0009295
GO:GO:0006265 EMBL:BA000040 GenomeReviews:BA000040_GR GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 KO:K02621 ProtClustDB:PRK05561
HOGENOM:HOG000076277 TIGRFAMs:TIGR01062 HSSP:P09097 OMA:KYKDGGL
RefSeq:NP_771697.1 ProteinModelPortal:Q89K54 GeneID:1051823
KEGG:bja:bll5057 PATRIC:21193782
BioCyc:BJAP224911:GJEJ-5094-MONOMER Uniprot:Q89K54
Length = 751
Score = 880 (314.8 bits), Expect = 1.3e-96, Sum P(2) = 1.3e-96
Identities = 179/411 (43%), Positives = 263/411 (63%)
Query: 7 EVISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKC 66
E+ + L E + + YL YA+S I+ RALPD RDGLKPVHRR+L+ M + F K
Sbjct: 12 EIHEVPLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGTAFKKS 71
Query: 67 ARVVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTECR 126
A++VG+ MG +HPHGD +IYDA+VR+AQ FS R LVDGQGNFG+IDGD+ AA RYTE R
Sbjct: 72 AKIVGDVMGSFHPHGDQAIYDAMVRLAQDFSSRYPLVDGQGNFGNIDGDNPAAYRYTEAR 131
Query: 127 LNKISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHN 186
+ ++ LL +D++ ++F NYDG+ KEP VLP PNLL NG+ GIAVGMAT+IPPHN
Sbjct: 132 MTDVARLLLEGIDEDGVEFRPNYDGQSKEPIVLPGGFPNLLANGAQGIAVGMATSIPPHN 191
Query: 187 LTEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGI-IYGLSSVHDGYYTGKGRVIIRAK 245
E+ D L+++ P+ L+K + PDFPT GI + ++ + Y TG+G +RA+
Sbjct: 192 AAELCDAALHLIEKPDAKSKALLKWVKGPDFPTGGICVDSKQAIAEAYTTGRGSFRVRAR 251
Query: 246 THIEEFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVI 305
EE R +++ E+P+ V K L+EKI++L +KKL + ++RDES + +RIVI
Sbjct: 252 WEQEEGAR-GTWVVVVTEIPFLVQKSRLIEKIAELQDQKKLPLVGDVRDESAED-VRIVI 309
Query: 306 ELK-RNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQ-PKLLNLKEILYYFILHRKEVIK 363
E K +N P +++ L++ T+L+N +N+ L+ G+ PK++ L E L ++ H ++V+
Sbjct: 310 EPKSKNVDPALMMESLFRLTELENKIPLNLNVLIKGRIPKVVGLAECLREWLDHLRDVLI 369
Query: 364 RRTIFELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIEST 414
RR+ + + +L G IA NID I+IIR+ P+ A K + T
Sbjct: 370 RRSNYRKAQIEHRLEVLGGFLIAYLNIDKVIKIIRTEDEPKPALMKAFKLT 420
Score = 120 (47.3 bits), Expect = 1.3e-96, Sum P(2) = 1.3e-96
Identities = 61/284 (21%), Positives = 116/284 (40%)
Query: 449 YKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVIDLTDILSNSKRXXXXXXXXXX 508
+KL+++QA+ IL M L+ L +E+ +I + +N+ ++ + +L++
Sbjct: 417 FKLTEVQAEAILNMRLRSLRKLEEMEIRTEDKNLRNELKGINAVLASEAEQWKKVGEQVG 476
Query: 509 XXKNKYGSHKKNIRRSEIILNAINPSTEDLIASQDMVITLSNLGYIKSQPISEYRAQKRG 568
++ +G +R +A P DL A ++ + + + S R K
Sbjct: 477 KVRDMFGPKTPLGKRRTTFADA--PE-HDLAAIEEAFVEREPVTVVVSDK-GWIRTMKGH 532
Query: 569 GRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKVWQIPQGSRNSRGKPIINMF 628
+ K +D + F A T +L F+ G+ Y L V ++P G G+PI +F
Sbjct: 533 VEDLSGLAFKQDDRLGFAFFAETTSKLLLFATNGKFYSLDVAKLPGG--RGHGEPI-RLF 589
Query: 629 SLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFSNPRKSG--IIAVNLS 686
+E V L ++ R F V G V + K G ++ V++
Sbjct: 590 IDLEQEAAPVALFVNKGGRKF----LVASHEGQGFVVNE--DDCVGTTKKGKQVLNVDMP 643
Query: 687 NEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAMGRSARGV 730
NE + + D + + ++ K + F + + M R RGV
Sbjct: 644 NEARTVTEVVGD---TVAVIGENRKMLVFPLDQIPEMARG-RGV 683
>TIGR_CMR|CBU_1866 [details] [associations]
symbol:CBU_1866 "DNA topoisomerase IV, A subunit"
species:227377 "Coxiella burnetii RSA 493" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009340 "DNA
topoisomerase IV complex" evidence=ISS] InterPro:IPR002205
InterPro:IPR005742 InterPro:IPR006691 InterPro:IPR013758
InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989 SMART:SM00434
GO:GO:0005524 GO:GO:0005694 EMBL:AE016828 GenomeReviews:AE016828_GR
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 KO:K02621 ProtClustDB:PRK05561
HOGENOM:HOG000076277 TIGRFAMs:TIGR01062 HSSP:P09097
RefSeq:NP_820843.1 ProteinModelPortal:Q83AL7 PRIDE:Q83AL7
GeneID:1209779 KEGG:cbu:CBU_1866 PATRIC:17932465 OMA:RIDFEAL
BioCyc:CBUR227377:GJ7S-1842-MONOMER Uniprot:Q83AL7
Length = 753
Score = 827 (296.2 bits), Expect = 2.8e-93, Sum P(3) = 2.8e-93
Identities = 175/398 (43%), Positives = 264/398 (66%)
Query: 13 LEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGE 72
L E + K+YLDY+MSVI+ RALP + DGLKPV RR+++AM E+ + K AR VG+
Sbjct: 19 LSEFVEKAYLDYSMSVILDRALPHIADGLKPVQRRIVYAMSELGLKSTAKYKKSARTVGD 78
Query: 73 TMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGD-SAAAMRYTECRLNKIS 131
+GK+HPHGD + Y+A+V MAQ FS R VDGQGN+GS D S AAMRYTE RL+ +
Sbjct: 79 VLGKFHPHGDTACYEAMVLMAQPFSFRYPFVDGQGNWGSADDPKSFAAMRYTEARLSAYA 138
Query: 132 NELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVI 191
LL +L + T+D+I N+DG KEP++LP R+PN+L+NG+SGIAVGMAT+IPPHNLTEV
Sbjct: 139 QLLLKELQEGTVDWIPNFDGTLKEPALLPARLPNVLLNGTSGIAVGMATDIPPHNLTEVA 198
Query: 192 DGVLYVLHNPECSINDLIKIIPAPDFPTAG-IIYGLSSVHDGYYTGKGRVIIRAKTHIEE 250
D +++L +PE ++ D++K I PD+PTA II + + Y TG+G + +RA
Sbjct: 199 DACIHLLEHPEATLKDVMKFIQGPDYPTAAEIITPTAEIRTLYRTGQGSLRMRAT----- 253
Query: 251 FNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESD-KSGMRIVIELKR 309
+ +EN I+I LP+QV+ ++E+I+ + KKL +S++RDESD ++ R+VI +
Sbjct: 254 YQKENGE-IVITALPHQVSGNRVMEQIAAQMVAKKLPAVSDIRDESDHENPTRLVITPRS 312
Query: 310 NEIP--EIVLNKLYKQTQLQNTFGMNMLAL-VNGQPKLLNLKEILYYFILHRKEVIKRRT 366
N I E++ + L+ T L+ ++ +N+ + ++G+PK+ +L +L ++ R + +++R
Sbjct: 313 NRINIHELMAH-LFVTTDLERSYRVNLNMIGIDGRPKVKDLISLLKEWLEFRMQTVRKRL 371
Query: 367 IFELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQ 404
+ L+ E H+LEG IA N+D I IIR P+
Sbjct: 372 QYRLQFVIERLHLLEGFIIAYLNLDAIIAIIRKEDKPK 409
Score = 115 (45.5 bits), Expect = 2.8e-93, Sum P(3) = 2.8e-93
Identities = 32/140 (22%), Positives = 66/140 (47%)
Query: 449 YKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVIDLTDILSNSKRXXXXXXXXXX 508
+KLSD QA+ IL++ L++L +E+KKI ++ + K+ ++ L++ +
Sbjct: 416 FKLSDRQAEAILEIKLRQLAKLEEKKIRDEQAILTKERDEIEKTLASKTKLKKLIRGELA 475
Query: 509 XXKNKYGSHKKNIRRSEIILNAINPSTEDLIASQDMVITLSNLGYIKSQPISEYRAQKRG 568
K KYG + + I I E+++ S+ + + LS G+I++ E +
Sbjct: 476 ADKEKYGDKRCSPLMERPIAKMIRE--EEMVPSEPVTVVLSKKGWIRAAKGHEVEGETLN 533
Query: 569 GRGKKAMMTKDEDWINQLFI 588
R + + + N+L +
Sbjct: 534 YRSGDEFLMQAQGRTNELAV 553
Score = 57 (25.1 bits), Expect = 3.1e-84, Sum P(2) = 3.1e-84
Identities = 21/109 (19%), Positives = 45/109 (41%)
Query: 540 ASQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFS 599
A D+ + S+ GY + + R G+ + + + Q Y+ +
Sbjct: 598 ADDDLFLLASDAGYGFLTSLVNLHVKNRSGKAVIKLPKGAQVMLPQRVHDKETQYLAAIT 657
Query: 600 NYGRLYWLKVWQIPQGSRNSRGKPIINMFSLK--NKEKITVILPLSNNK 646
+ GRL + ++P+ + +G II + + N+E+ V L + + K
Sbjct: 658 SEGRLLLFPIAELPELPKG-KGNKIIQIAPARVANREEYCVALAVLHEK 705
Score = 52 (23.4 bits), Expect = 2.8e-93, Sum P(3) = 2.8e-93
Identities = 43/176 (24%), Positives = 84/176 (47%)
Query: 686 SNEDFLIGAALTDGSYDIMLFSDS-GKAVRFNENSVRAMGRSARGV---IGMRLEKKQKV 741
S ++FL+ A + ++ +F DS GK+ + + SARG+ + RL+
Sbjct: 536 SGDEFLMQAQ--GRTNELAVFLDSAGKSYALPAHILP----SARGLGDPLTSRLKPASGA 589
Query: 742 --IALLVSNNQKQSVLTATENGYGKRT-LIKEYTKHNRGTKGIISIKTNKRNGKVVAATL 798
+ +L+ + +L A++ GYG T L+ + K NR K +I + + +V+ L
Sbjct: 590 HFVGVLMGADDDLFLL-ASDAGYGFLTSLVNLHVK-NRSGKAVIKLP---KGAQVM---L 641
Query: 799 VNRYHE-----IMLITTGGILIRTRVSEIRKM--GRSTQGVILIT---VENKSKLC 844
R H+ + IT+ G L+ ++E+ ++ G+ + +I I V N+ + C
Sbjct: 642 PQRVHDKETQYLAAITSEGRLLLFPIAELPELPKGKGNK-IIQIAPARVANREEYC 696
Score = 38 (18.4 bits), Expect = 3.4e-85, Sum P(3) = 3.4e-85
Identities = 10/38 (26%), Positives = 22/38 (57%)
Query: 554 IKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANT 591
IK + +++ +K R ++A++TK+ D I + + T
Sbjct: 429 IKLRQLAKLEEKKI--RDEQAILTKERDEIEKTLASKT 464
>TIGR_CMR|ECH_0402 [details] [associations]
symbol:ECH_0402 "putative ribosomal protein S1"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] [GO:0015935 "small ribosomal subunit"
evidence=ISS] InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006412 GO:GO:0003723 GO:GO:0005840
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539
HOGENOM:HOG000044052 KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299
RefSeq:YP_507222.1 ProteinModelPortal:Q2GH61 STRING:Q2GH61
GeneID:3927480 KEGG:ech:ECH_0402 PATRIC:20576281
BioCyc:ECHA205920:GJNR-403-MONOMER Uniprot:Q2GH61
Length = 567
Score = 912 (326.1 bits), Expect = 1.7e-90, P = 1.7e-90
Identities = 186/514 (36%), Positives = 298/514 (57%)
Query: 1070 FATLFKESLLRHDMRSGEVISAEVIGLDRNFVIINADLKSEAFIPIEEFKNDNGELEVKI 1129
F KE + ++ G++I +I +D+ +V I++ LKSE+ + ++EF+ + + I
Sbjct: 45 FQHALKE-FIDDSVKEGQIIEGTIICIDKGYVTIDSGLKSESIVSLKEFELGDDYQNISI 103
Query: 1130 GDFVSVAIESLENGFGDTILSRDKAKRLASWLSLEKAMESGEIITGTINGKVKGGLTVLT 1189
G V + +E +E G +LSR+KA R W LE+A E E + G I +K G TV
Sbjct: 104 GSKVKLYLEKIEGRNGSVVLSREKAIRDELWQKLEEAAEKKEDVEGVIFSSIKCGYTVDI 163
Query: 1190 NGLKAFLPGSLVDIRPVKDTTPFEGKTMDFKVIKLDRKRNNVVLSHRAVIEESMGEERQK 1249
G+ AFLP S V +R VKD TP GK F+++K+D+K+ N+V+S +A++EES+ + +
Sbjct: 164 KGVVAFLPASHVALRQVKDITPLLGKKQKFRILKMDKKQGNIVVSRKAILEESLADAKSL 223
Query: 1250 LIETLKEGCTVKGVVKNITDYGAFIDL------GGIDGLLHITDIAWRRVKHPSEILTIG 1303
+ L EG ++G VK+IT YG FI++ G +DGLLHITDI+W RV HPS + + G
Sbjct: 224 YLSQLNEGDIIEGKVKSITKYGVFIEIHESPSVGVVDGLLHITDISWSRVSHPSAVFSCG 283
Query: 1304 QDISTKILKYDQEKNRVSLGMKQLGIDPWIGLSFRYPRGTRLLGKVTNLTDYGAFVEIEK 1363
Q + TKI+K D+E ++SLG+KQL PW + +YP + G VT++ +YG FVE+E
Sbjct: 284 QTVKTKIIKIDRENKKISLGVKQLEESPWSNIEKKYPVDSIHKGIVTSIEEYGVFVELET 343
Query: 1364 GIEGLVHISEMDWINKNVTPSKIVQLNDTVEIMILEINEERRRISLGMKQCKDNPWENFX 1423
GIEGLVH+SE+ W ++ +++ + +++ +L I+ + R+SL MK+C+DNPW+ F
Sbjct: 344 GIEGLVHVSEVSWTKNSLPINQLFMRGEEIQVKVLSIDTAKSRMSLSMKRCQDNPWQAFT 403
Query: 1424 XXXXXXXXXXXXXXXXTDFGIFIGLDGN-----IDGLIHLSDLSWTDPGEEIIRNFKKGD 1478
T+ GIF+ N I+GLI ++LSW+ E I+ + GD
Sbjct: 404 LKYPLGSIVSTKIKNITNLGIFVSFQDNTLNDGIEGLIRTTELSWSLSPEAAIKKYNVGD 463
Query: 1479 EIEAIILSIDVEKERISLGIKQLEGDPFNNYVNINDKGSLVNGIIKSIDTNKGAIIQLSN 1538
+EA IL I+ K +I LG+KQLE DPF + + + G + + + + G ++ + N
Sbjct: 464 SVEAKILMINPNKSKIDLGVKQLEYDPFLDLLKKINLGDKIPVTVTKVVEDTGILVDVFN 523
Query: 1539 EVEGY-LRISEEDNKHEKKLKIGENIDVLTVLID 1571
+ L I +E KK G+ ++ +LI+
Sbjct: 524 GSNSFNLLIEQEYLPDNKKFFPGDRLEAEVLLIE 557
Score = 431 (156.8 bits), Expect = 4.7e-39, P = 4.7e-39
Identities = 133/491 (27%), Positives = 244/491 (49%)
Query: 1126 EVKIGDFVSVAIESLENGFGDTILSRDKAKRLASWLSLEKAMESGEIITGTINGKVKGGL 1185
++K F+S +E +E+ D+ S + L ++ + +++ G+II GTI KG +
Sbjct: 21 KIKSNKFISHNLE-VEDSDNDS--SSEFQHALKEFI--DDSVKEGQIIEGTIICIDKGYV 75
Query: 1186 TVLTNGLKAFLPGSLVDIRPVKDTTPFE-GKTMDFKVIKLDRKRNNVVLSHRAVIEESMG 1244
T+ +GLK+ SL + D G + + K++ + +VVLS I + +
Sbjct: 76 TI-DSGLKSESIVSLKEFELGDDYQNISIGSKVKLYLEKIEGRNGSVVLSREKAIRDELW 134
Query: 1245 EERQKLIETLKEGCTVKGVVKNITDYGAFIDLGGIDGLLHITDIAWRRVKHPSEILTIGQ 1304
QKL E ++ V+GV+ + G +D+ G+ L + +A R+VK + +L Q
Sbjct: 135 ---QKLEEAAEKKEDVEGVIFSSIKCGYTVDIKGVVAFLPASHVALRQVKDITPLLGKKQ 191
Query: 1305 DISTKILKYDQEK---NRVSLGMKQLGIDPWIGLSFRYPRGTRLLGKVTNLTDYGAFVEI 1361
+ Q +R ++ + L + LS + G + GKV ++T YG F+EI
Sbjct: 192 KFRILKMDKKQGNIVVSRKAILEESLADAKSLYLS-QLNEGDIIEGKVKSITKYGVFIEI 250
Query: 1362 EKG-----IEGLVHISEMDWINKNVTPSKIVQLNDTVEIMILEINEERRRISLGMKQCKD 1416
+ ++GL+HI+++ W ++ PS + TV+ I++I+ E ++ISLG+KQ ++
Sbjct: 251 HESPSVGVVDGLLHITDISW-SRVSHPSAVFSCGQTVKTKIIKIDRENKKISLGVKQLEE 309
Query: 1417 NPWENFXXXXXXXXXXXXXXXXXTDFGIFIGLDGNIDGLIHLSDLSWTDPGEEIIRNFKK 1476
+PW N ++G+F+ L+ I+GL+H+S++SWT I + F +
Sbjct: 310 SPWSNIEKKYPVDSIHKGIVTSIEEYGVFVELETGIEGLVHVSEVSWTKNSLPINQLFMR 369
Query: 1477 GDEIEAIILSIDVEKERISLGIKQLEGDPFNNYVNINDKGSLVNGIIKSIDTNKGAIIQ- 1535
G+EI+ +LSID K R+SL +K+ + +P+ + GS+V+ IK+I TN G +
Sbjct: 370 GEEIQVKVLSIDTAKSRMSLSMKRCQDNPWQAFTLKYPLGSIVSTKIKNI-TNLGIFVSF 428
Query: 1536 ----LSNEVEGYLRISE-----EDNKHEKKLKIGENIDVLTVLIDHKTRYIQLSFXXXXX 1586
L++ +EG +R +E KK +G++++ ++I+ I L
Sbjct: 429 QDNTLNDGIEGLIRTTELSWSLSPEAAIKKYNVGDSVEAKILMINPNKSKIDLGVKQLEY 488
Query: 1587 XXXXXLLTSIN 1597
LL IN
Sbjct: 489 DPFLDLLKKIN 499
Score = 334 (122.6 bits), Expect = 1.1e-26, P = 1.1e-26
Identities = 110/414 (26%), Positives = 199/414 (48%)
Query: 1106 DLKSE-AFIPIEEFK-NDNGELEVKIGDFVSVAIESLENGFGDTILSRDKA---KRLASW 1160
D+K AF+P ++ +G I ++ G+ ++SR KA + LA
Sbjct: 162 DIKGVVAFLPASHVALRQVKDITPLLGKKQKFRILKMDKKQGNIVVSR-KAILEESLADA 220
Query: 1161 LSLEKA-MESGEIITGTINGKVKGGLTVLTNGLKAF--LPGSL--VDIRPVKDTTP---F 1212
SL + + G+II G + K G+ + + + + G L DI + + P F
Sbjct: 221 KSLYLSQLNEGDIIEGKVKSITKYGVFIEIHESPSVGVVDGLLHITDISWSRVSHPSAVF 280
Query: 1213 E-GKTMDFKVIKLDRKRNNVVLSHRAVIEESMGE-ERQKLIETLKEGCTVKGVVKNITDY 1270
G+T+ K+IK+DR+ + L + + E E++ ++++ KG+V +I +Y
Sbjct: 281 SCGQTVKTKIIKIDRENKKISLGVKQLEESPWSNIEKKYPVDSIH-----KGIVTSIEEY 335
Query: 1271 GAFIDLG-GIDGLLHITDIAWRRVKHP-SEILTIGQDISTKILKYDQEKNRVSLGMKQLG 1328
G F++L GI+GL+H+++++W + P +++ G++I K+L D K+R+SL MK+
Sbjct: 336 GVFVELETGIEGLVHVSEVSWTKNSLPINQLFMRGEEIQVKVLSIDTAKSRMSLSMKRCQ 395
Query: 1329 IDPWIGLSFRYPRGTRLLGKVTNLTDYGAFVEIEK-----GIEGLVHISEMDWINKNVTP 1383
+PW + +YP G+ + K+ N+T+ G FV + GIEGL+ +E+ W
Sbjct: 396 DNPWQAFTLKYPLGSIVSTKIKNITNLGIFVSFQDNTLNDGIEGLIRTTELSWSLSPEAA 455
Query: 1384 SKIVQLNDTVEIMILEINEERRRISLGMKQCKDNPWENFXXXXXXXXXXXXXXXXXT-DF 1442
K + D+VE IL IN + +I LG+KQ + +P+ + D
Sbjct: 456 IKKYNVGDSVEAKILMINPNKSKIDLGVKQLEYDPFLDLLKKINLGDKIPVTVTKVVEDT 515
Query: 1443 GIFIGLDGNIDGLIHLSDLSWTDPGEEIIRNFKKGDEIEAIILSIDVEKERISL 1496
GI + + + L + + P + F GD +EA +L I+ +SL
Sbjct: 516 GILVDVFNGSNSFNLLIEQEYL-PDN---KKFFPGDRLEAEVLLIETYNMILSL 565
Score = 180 (68.4 bits), Expect = 8.0e-10, P = 8.0e-10
Identities = 56/187 (29%), Positives = 88/187 (47%)
Query: 1440 TDFGIFIGLD-----GNIDGLIHLSDLSWTDPGEEIIRNFKKGDEIEAIILSIDVEKERI 1494
T +G+FI + G +DGL+H++D+SW+ F G ++ I+ ID E ++I
Sbjct: 242 TKYGVFIEIHESPSVGVVDGLLHITDISWSRVSHPSAV-FSCGQTVKTKIIKIDRENKKI 300
Query: 1495 SLGIKQLEGDPFNNYVNINDKGSLVNGIIKSIDTNKGAIIQLSNEVEGYLRISEED-NKH 1553
SLG+KQLE P++N S+ GI+ SI+ G ++L +EG + +SE K+
Sbjct: 301 SLGVKQLEESPWSNIEKKYPVDSIHKGIVTSIE-EYGVFVELETGIEGLVHVSEVSWTKN 359
Query: 1554 EKKLKI----GENIDVLTVLIDHKTRYIQLSFXXXXXXXXXXL-----LTSINANTISGT 1604
+ GE I V + ID + LS L SI + I
Sbjct: 360 SLPINQLFMRGEEIQVKVLSIDTAKSRMSLSMKRCQDNPWQAFTLKYPLGSIVSTKIKNI 419
Query: 1605 TNLGLIL 1611
TNLG+ +
Sbjct: 420 TNLGIFV 426
>TIGR_CMR|APH_0273 [details] [associations]
symbol:APH_0273 "ribosomal protein S1" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 GO:GO:0003735 EMBL:CP000235
GenomeReviews:CP000235_GR Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR002792 PROSITE:PS50926
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539
HOGENOM:HOG000044052 KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299
RefSeq:YP_504887.1 ProteinModelPortal:Q2GL64 STRING:Q2GL64
GeneID:3930767 KEGG:aph:APH_0273 PATRIC:20949120
BioCyc:APHA212042:GHPM-305-MONOMER Uniprot:Q2GL64
Length = 542
Score = 910 (325.4 bits), Expect = 2.8e-90, P = 2.8e-90
Identities = 184/505 (36%), Positives = 294/505 (58%)
Query: 1078 LLRHDMRSGEVISAEVIGLDRNFVIINADLKSEAFIPIEEFKNDNGELEVKIGDFVSVAI 1137
LL R GE+I VI D ++ ++A LKSE + + EF+ G+ ++++G V + +
Sbjct: 28 LLDGGPREGEIIEGTVICKDSGYITVDAGLKSEGVVSLREFELGEGKQDIEVGSKVKLYL 87
Query: 1138 ESLENGFGDTILSRDKAKRLASWLSLEKAMESGEIITGTINGKVKGGLTVLTNGLKAFLP 1197
E E G +LSR+KA R W LE+A I G I G +K G TV G+ AFLP
Sbjct: 88 EKTEGKSGSVVLSREKAVRDELWQKLEQAAAENLDIEGVIFGSIKCGFTVDVGGVVAFLP 147
Query: 1198 GSLVDIRPVKDTTPFEGKTMDFKVIKLDRKRNNVVLSHRAVIEESMGEERQKLIETLKEG 1257
S V +R VKD TP GK F+++K+D+K+ NVV+S +AV+EES+ + + + TL+EG
Sbjct: 148 ASHVGLRQVKDITPLLGKKQKFRILKMDKKQGNVVVSRKAVLEESLADAKDSFLSTLEEG 207
Query: 1258 CTVKGVVKNITDYGAFIDL------GGIDGLLHITDIAWRRVKHPSEILTIGQDISTKIL 1311
V+G VK+IT YG FI++ G +DGLLHITDI+W RV HPS + + GQ + KI+
Sbjct: 208 SIVEGKVKSITKYGVFIEIHESPTVGVVDGLLHITDISWSRVSHPSAVFSCGQTVRAKII 267
Query: 1312 KYDQEKNRVSLGMKQLGIDPWIGLSFRYPRGTRLLGKVTNLTDYGAFVEIEKGIEGLVHI 1371
+ D+E ++SLG+KQL PW + RYP G+ G VT++ DYG FVE+E G+EGL+H+
Sbjct: 268 RIDRENRKISLGVKQLEESPWANVEERYPVGSIHKGTVTSIEDYGIFVELETGVEGLIHV 327
Query: 1372 SEMDWINKNVTPSKIVQLNDTVEIMILEINEERRRISLGMKQCKDNPWENFXXXXXXXXX 1431
SE+ W+ ++ +++ + +E+ +L I+ + R+SL +K+CK+NPWE F
Sbjct: 328 SEVSWVRSHLPVNQLFMRGEEIEVKVLSIDATKNRMSLSIKRCKENPWEAFIEKHPVGSI 387
Query: 1432 XXXXXXXXTDFGIFIGL---DGN--IDGLIHLSDLSWTDPGEEIIRNFKKGDEIEAIILS 1486
+ G+F+ L D N I+GLI ++LSW+ E ++ + GD ++A IL
Sbjct: 388 VNTKVKSIGNLGMFVSLTDDDTNSGIEGLIRSTELSWSGSPESALKRYNIGDCLQAKILM 447
Query: 1487 IDVEKERISLGIKQLEGDPFNNYVNINDKGSLVNGIIKSIDTNKGAIIQLSNEVEGYLRI 1546
+ + +I LG+KQ+E DPF + G + + + + G ++ + + E + +
Sbjct: 448 VSANRNKIDLGVKQIEHDPFLGLLRRVGIGERIPVTVSKVLEDVGVMVDVFDGSESFNVL 507
Query: 1547 SEEDNKHE-KKLKIGENIDVLTVLI 1570
E+ + E KK G+ ++ ++I
Sbjct: 508 VEQKHIPEGKKFFPGDRVEAEVLMI 532
>UNIPROTKB|P0AFI2 [details] [associations]
symbol:parC species:83333 "Escherichia coli K-12"
[GO:0007059 "chromosome segregation" evidence=IDA;IMP] [GO:0003916
"DNA topoisomerase activity" evidence=IEA;IDA] [GO:0019897
"extrinsic to plasma membrane" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA;IBA;IDA] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=IDA] [GO:0006265
"DNA topological change" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0030541 "plasmid partitioning"
evidence=IDA] [GO:0007062 "sister chromatid cohesion" evidence=IMP]
[GO:0005694 "chromosome" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0009295 "nucleoid" evidence=IBA] [GO:0005515
"protein binding" evidence=IPI] [GO:0016853 "isomerase activity"
evidence=IEA] InterPro:IPR002205 InterPro:IPR005742
InterPro:IPR006691 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 Pfam:PF03989 SMART:SM00434 GO:GO:0005524 GO:GO:0005737
GO:GO:0005694 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0019897 EMBL:U28377
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0009330 GO:GO:0009295
GO:GO:0007062 GO:GO:0006265 EMBL:M63491 eggNOG:COG0188
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 DrugBank:DB00817
GO:GO:0030541 KO:K02621 ProtClustDB:PRK05561 EMBL:M58408
EMBL:L22025 PIR:A65089 RefSeq:NP_417491.1 RefSeq:YP_491211.1
PDB:1ZVT PDB:1ZVU PDBsum:1ZVT PDBsum:1ZVU ProteinModelPortal:P0AFI2
SMR:P0AFI2 DIP:DIP-36030N IntAct:P0AFI2 MINT:MINT-1227290
PaxDb:P0AFI2 PRIDE:P0AFI2 EnsemblBacteria:EBESCT00000000502
EnsemblBacteria:EBESCT00000015620 GeneID:12933371 GeneID:947499
KEGG:ecj:Y75_p2945 KEGG:eco:b3019 PATRIC:32121452 EchoBASE:EB0680
EcoGene:EG10686 HOGENOM:HOG000076277 OMA:YKAGDSY
BioCyc:EcoCyc:EG10686-MONOMER BioCyc:ECOL316407:JW2987-MONOMER
BindingDB:P0AFI2 ChEMBL:CHEMBL1895 EvolutionaryTrace:P0AFI2
Genevestigator:P0AFI2 HAMAP:MF_00936 TIGRFAMs:TIGR01062
Uniprot:P0AFI2
Length = 752
Score = 827 (296.2 bits), Expect = 7.1e-89, Sum P(2) = 7.1e-89
Identities = 188/472 (39%), Positives = 296/472 (62%)
Query: 11 ILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVV 70
+ L E +YL+Y+M VI+ RALP + DGLKPV RR+++AM E+ + F K AR V
Sbjct: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67
Query: 71 GETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGD-SAAAMRYTECRLNK 129
G+ +GKYHPHGD + Y+A+V MAQ FS R LVDGQGN+G+ D S AAMRYTE RL+K
Sbjct: 68 GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 127
Query: 130 ISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTE 189
S LL +L + T D++ N+DG +EP +LP R+PN+L+NG++GIAVGMAT+IPPHNL E
Sbjct: 128 YSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLRE 187
Query: 190 VIDGVLYVLHNPECSINDLIKIIPAPDFPT-AGIIYGLSSVHDGYYTGKGRVIIRAKTHI 248
V + ++ P+ +++ L+ I+ PD+PT A II + + Y G+G V +RA
Sbjct: 188 VAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV--- 244
Query: 249 EEFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESD-KSGMRIVIEL 307
+ +E+ A++I LP+QV+ +LE+I+ ++ KKL + +LRDESD ++ R+VI
Sbjct: 245 --WKKEDG-AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301
Query: 308 KRNEIP-EIVLNKLYKQTQLQNTF--GMNMLALVNGQPKLLNLKEILYYFILHRKEVIKR 364
+ N + + V+N L+ T L+ ++ +NM+ L +G+P + NL EIL +++ R++ ++R
Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGL-DGRPAVKNLLEILSEWLVFRRDTVRR 360
Query: 365 RTIFELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKII 424
R + L K + HILEGL +A NID I+IIR+ P+ A + S + L +
Sbjct: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----LMSRFGLTETQAEA 416
Query: 425 GFNKKNYNTISKINNIS-KLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKI 475
K ++K+ + + + +++ K D Q Q IL +++ N+ +K++
Sbjct: 417 ILELK-LRHLAKLEEMKIRGEQSELEKERD-QLQGILASE-RKMNNLLKKEL 465
Score = 101 (40.6 bits), Expect = 7.1e-89, Sum P(2) = 7.1e-89
Identities = 43/203 (21%), Positives = 90/203 (44%)
Query: 449 YKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVIDLTDILSNSKRXXXXXXXXXX 508
+ L++ QA+ IL++ L+ L +E+ KI + + K+ L IL++ ++
Sbjct: 407 FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQ 466
Query: 509 XXKNKYGSHKKNIRRSEIILNAINPSTEDLIASQDMVITLSNLGYIKSQPISEYRAQ--- 565
YG +++ + A+ S D++ S+ + I LS +G+++S + A
Sbjct: 467 ADAQAYGDDRRSPLQEREEAKAM--SEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLN 524
Query: 566 -KRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKVWQIPQGSRNSRGKPI 624
K G K A+ K + +F+ +T GR Y + +P S +G+P+
Sbjct: 525 YKAGDSFKAAVKGKSNQPV--VFVDST----------GRSYAIDPITLP--SARGQGEPL 570
Query: 625 INMFSLKNKEKITVILPLSNNKR 647
+L + +L S++++
Sbjct: 571 TGKLTLPPGATVDHMLMESDDQK 593
Score = 77 (32.2 bits), Expect = 2.4e-86, Sum P(2) = 2.4e-86
Identities = 36/167 (21%), Positives = 75/167 (44%)
Query: 694 AALTDGSYDIMLFSDS-GKAVRFNE---NSVRAMGRSARGVIGMRLEKKQKVIALLVSNN 749
AA+ S ++F DS G++ + S R G G + L V +L+ ++
Sbjct: 533 AAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKL--TLPPGATVDHMLMESD 590
Query: 750 QKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLVNRYHEIML-I 808
Q +L A++ GYG + NR K +I++ N V+ ++ +++L I
Sbjct: 591 D-QKLLMASDAGYGFVCTFNDLVARNRAGKALITLP---ENAHVMPPVVIEDASDMLLAI 646
Query: 809 TTGGILIRTRVSEIRKMGRSTQGVILITVENKSKLCGVQRLCKITMI 855
T G ++ VS++ ++ + +G +I + + G L ++ ++
Sbjct: 647 TQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAEAARGEDGLAQLYVL 692
Score = 69 (29.3 bits), Expect = 1.7e-85, Sum P(2) = 1.7e-85
Identities = 26/93 (27%), Positives = 46/93 (49%)
Query: 538 LIASQDMVITL-SNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDW--INQLFIANTHDY 594
L+ S D + + S+ GY ++ A+ R G KA++T E+ + + I + D
Sbjct: 586 LMESDDQKLLMASDAGYGFVCTFNDLVARNRAG---KALITLPENAHVMPPVVIEDASDM 642
Query: 595 ILCFSNYGRLYWLKVWQIPQGSRNSRGKPIINM 627
+L + GR+ V +PQ S+ +G IIN+
Sbjct: 643 LLAITQAGRMLMFPVSDLPQLSKG-KGNKIINI 674
Score = 40 (19.1 bits), Expect = 1.9e-82, Sum P(2) = 1.9e-82
Identities = 7/36 (19%), Positives = 20/36 (55%)
Query: 1221 VIKLDRKRNNVVLSHRAVIEESMGEERQKLIETLKE 1256
++ +RK NN++ ++ G++R+ ++ +E
Sbjct: 450 ILASERKMNNLLKKELQADAQAYGDDRRSPLQEREE 485
>UNIPROTKB|A6VD77 [details] [associations]
symbol:parC "DNA topoisomerase IV, A subunit"
species:381754 "Pseudomonas aeruginosa PA7" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] InterPro:IPR002205 InterPro:IPR005742
InterPro:IPR006691 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 Pfam:PF03989 SMART:SM00434 GO:GO:0005524 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 EMBL:CP000744 GenomeReviews:CP000744_GR
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0009295 GO:GO:0006265
eggNOG:COG0188 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
KO:K02621 ProtClustDB:PRK05561 HOGENOM:HOG000076277 OMA:YKAGDSY
TIGRFAMs:TIGR01062 RefSeq:YP_001351012.1 ProteinModelPortal:A6VD77
SMR:A6VD77 STRING:A6VD77 GeneID:5358846 KEGG:pap:PSPA7_5693
PATRIC:19832871 BioCyc:PAER381754:GHMY-5699-MONOMER Uniprot:A6VD77
Length = 754
Score = 804 (288.1 bits), Expect = 1.7e-86, Sum P(2) = 1.7e-86
Identities = 169/391 (43%), Positives = 260/391 (66%)
Query: 19 KSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGETMGKYH 78
++YL+Y+M VI+ RALP + DGLKPV RR+++AM E+ + K AR VG+ +GK+H
Sbjct: 23 QAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLDADSKHKKSARTVGDVLGKFH 82
Query: 79 PHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGD-SAAAMRYTECRLNKISNELLID 137
PHGD++ Y+A+V MAQ FS R LVDGQGN+G+ D S AAMRYTE RL++ S LL +
Sbjct: 83 PHGDLACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTEARLSRYSEVLLSE 142
Query: 138 LDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGVLYV 197
L + T+D++ N+DG EP+VLP R+PNLL+NG++GIAVGMAT++PPHNL EV + +
Sbjct: 143 LGQGTVDWVPNFDGTLDEPAVLPARLPNLLLNGTTGIAVGMATDVPPHNLREVASACVRL 202
Query: 198 LHNPECSINDLIKIIPAPDFPT-AGIIYGLSSVHDGYYTGKGRVIIRAKTHIEEFNRENR 256
L P ++ +L + +P PDFPT A II + + Y TG+G V +RA +E+ +
Sbjct: 203 LDQPGATVAELCEHVPGPDFPTEAEIITPRADLQKVYETGRGSVRMRAVYRVEDGD---- 258
Query: 257 TAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESD-KSGMRIVIELKRNEIP-E 314
I+I LP+QV+ +LE+I+ ++ KKL +++LRDESD ++ RIVI + N + E
Sbjct: 259 --IVIHALPHQVSGSKVLEQIAGQMQAKKLPMVADLRDESDHENPTRIVIIPRSNRVDVE 316
Query: 315 IVLNKLYKQTQLQNTFGMNMLAL-VNGQPKLLNLKEILYYFILHRKEVIKRRTIFELRKA 373
++ L+ T L+ T+ +N+ + ++G+P++ +L+++L ++ +R ++RR F L K
Sbjct: 317 ELMTHLFATTDLETTYRVNLNIIGLDGKPQVKDLRQLLSEWLQYRIGTVRRRLQFRLDKV 376
Query: 374 REYAHILEGLTIALTNIDNFIQIIRSTSTPQ 404
H+L+GL IA N+D I IIR+ P+
Sbjct: 377 ERRLHLLDGLLIAFLNLDEVIHIIRTEDQPK 407
Score = 102 (41.0 bits), Expect = 1.7e-86, Sum P(2) = 1.7e-86
Identities = 72/344 (20%), Positives = 137/344 (39%)
Query: 447 DMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVIDLTDILSNSKRXXXXXXXX 506
+ ++LS++QA IL L++L +E+ KI + E ++K+ L +L + +
Sbjct: 412 ERFELSEVQADYILDTRLRQLARLEEMKIRGEQEELLKEQKRLQTLLGSEAKLKKLVREE 471
Query: 507 XXXXKNKYGSHKKN--IRRSEIILNAINPSTEDLIASQDMVITLSNLGYIKSQPISEYRA 564
YG +++ + R+E A++ TE L+ ++ + + LS G+++ + A
Sbjct: 472 LIKDAETYGDDRRSPIVARAEA--RALS-ETE-LMPTEPVTVVLSEKGWVRCAKGHDIDA 527
Query: 565 QKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKVWQIPQGSRNSRGKPI 624
G KA D ++ Y + + GR Y L +P S +G+P+
Sbjct: 528 ---AGLSYKA-----GDGFKAAAPGRSNQYAVFIDSTGRSYSLPAHSLP--SARGQGEPL 577
Query: 625 INMFSLKNKEKIT-VILPLSNNKRDFPKN---NYVFMSTSLGIVKKTLLSNFSNPRKSGI 680
+ V+LP + + +V L K + S P + +
Sbjct: 578 SGRLTPPPGASFECVLLPDDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNGAAV 637
Query: 681 IA---VNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAMGRSARGVIGMRLEK 737
+A V +D+L A T+G ++LF S + G G+ G R+
Sbjct: 638 VAPRPVRDVEQDWL-AAVTTEGR--LLLFKVSDLP-----QLGKGKGNKIIGIPGERVAS 689
Query: 738 KQKVIA-LLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKG 780
+++ + L V VL A + + E+ K RG +G
Sbjct: 690 REEYLTDLAVLPAGATLVLQAGKRTLSLKGDDLEHYKGERGRRG 733
Score = 58 (25.5 bits), Expect = 7.4e-82, Sum P(2) = 7.4e-82
Identities = 21/81 (25%), Positives = 39/81 (48%)
Query: 757 ATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLVNRYHE---IMLITTGGI 813
A++ GYG ++ N+ K ++S+ NG V A R E + +TT G
Sbjct: 604 ASDAGYGFVVKGEDLQAKNKAGKALLSLP----NGAAVVAPRPVRDVEQDWLAAVTTEGR 659
Query: 814 LIRTRVSEIRKMGRSTQGVIL 834
L+ +VS++ ++G+ I+
Sbjct: 660 LLLFKVSDLPQLGKGKGNKII 680
>UNIPROTKB|Q9KPE0 [details] [associations]
symbol:VC_2430 "Topoisomerase IV, subunit A" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0007059 "chromosome
segregation" evidence=ISS] [GO:0009340 "DNA topoisomerase IV
complex" evidence=ISS] InterPro:IPR002205 InterPro:IPR005742
InterPro:IPR006691 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 Pfam:PF03989 SMART:SM00434 GO:GO:0005524 GO:GO:0005694
GO:GO:0007059 GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 KO:K02621 ProtClustDB:PRK05561
OMA:YKAGDSY TIGRFAMs:TIGR01062 HSSP:P09097 GO:GO:0009340 PIR:F82078
RefSeq:NP_232060.1 ProteinModelPortal:Q9KPE0 SMR:Q9KPE0
DNASU:2612972 GeneID:2612972 KEGG:vch:VC2430 PATRIC:20083879
Uniprot:Q9KPE0
Length = 761
Score = 808 (289.5 bits), Expect = 1.9e-83, Sum P(2) = 1.9e-83
Identities = 182/462 (39%), Positives = 288/462 (62%)
Query: 20 SYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGETMGKYHP 79
+YL+Y+M VI+ RALP + DGLKPV RR+++AM E+ + + K AR VG+ +GKYHP
Sbjct: 22 AYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKKSARTVGDVLGKYHP 81
Query: 80 HGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGD-SAAAMRYTECRLNKISNELLIDL 138
HGD + Y+A+V MAQ FS R LVDGQGN+G+ D S AAMRYTE +L+K + LL +L
Sbjct: 82 HGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTEAKLSKFAEILLSEL 141
Query: 139 DKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGVLYVL 198
+ T+D+ N+DG +EP +LP R+P++L+NG +GIAVGMAT+IPPHN+ EV D ++++
Sbjct: 142 GQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPPHNVREVADATIHLI 201
Query: 199 HNPECSINDLIKIIPAPDFPT-AGIIYGLSSVHDGYYTGKGRVIIRAKTHIEEFNRENRT 257
NP + DL++ + PDFPT A II + Y +G+G + +RA + +E +
Sbjct: 202 DNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSIKMRAV-----WCKEG-S 255
Query: 258 AIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESD-KSGMRIVIELKRNEIP-EI 315
I+I LP+QV+ LLE+I+ ++ KKL + +LRDESD ++ RIVI + N + ++
Sbjct: 256 DIVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRIVIVPRSNRVDCDL 315
Query: 316 VLNKLYKQTQLQNTF--GMNMLALVNGQPKLLNLKEILYYFILHRKEVIKRRTIFELRKA 373
++N L+ T L+ +F +NM+ L N +P++ L +IL +I R+E ++ R + L K
Sbjct: 316 LMNHLFASTDLEKSFRVNLNMIGLDN-RPQVKGLVQILSEWISFRRETVRSRLQYRLDKV 374
Query: 374 REYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIGFNKKNYNT 433
HIL+GL IA N+D I+IIR+ P+ ++ + ++L D+ + K
Sbjct: 375 LARLHILQGLLIAYLNLDEVIEIIRNEDDPKA----VLMARFDLTDIQADAILDTK-LRH 429
Query: 434 ISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKI 475
++K+ + D + + +E+L +RL N+ +K+I
Sbjct: 430 LAKLEEMKIRGEQDELEKERKKLEELLGSE-RRLNNLLKKEI 470
Score = 69 (29.3 bits), Expect = 1.9e-83, Sum P(2) = 1.9e-83
Identities = 29/116 (25%), Positives = 51/116 (43%)
Query: 564 AQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKVWQIPQGSRNSRGKP 623
++ R G+ + E Q+ +D IL +N GR+ + +PQ S+ +G
Sbjct: 618 SKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLSKG-KGNK 676
Query: 624 IINMFSLKNKEKITVILPLSNNKRDFPKNNYVFM---STSLGIVKKTLLSNFSNPR 676
IIN+ + K K + V+ +N P+ + + LG+ K + L NF R
Sbjct: 677 IINIPAAKAKTREEVL----SNLMVLPQGASITLYAGKRKLGL-KVSDLDNFRGER 727
Score = 66 (28.3 bits), Expect = 3.9e-83, Sum P(2) = 3.9e-83
Identities = 31/158 (19%), Positives = 63/158 (39%)
Query: 686 SNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAMGRSARGVIGMRLEKKQKVIALL 745
+ +++L A + L SD G++ +++ + + G + I +
Sbjct: 532 AGDNYLTHACGKSNQQAVFLGSD-GRSYSLESHTLPSARGQGEPITGRLNVAEGTTIRQV 590
Query: 746 VSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKR-NGKVVAATLVNRYHE 804
V + Q L ++ GYG + NR K +I++ N V A L N E
Sbjct: 591 VMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDN--DE 648
Query: 805 IMLITTGGILIRTRVSEIRKMGRSTQGVILITVENKSK 842
I+ IT G ++ + ++ ++ + I+ K+K
Sbjct: 649 ILAITNQGRMLLFPIKDLPQLSKGKGNKIINIPAAKAK 686
Score = 38 (18.4 bits), Expect = 3.5e-80, Sum P(2) = 3.5e-80
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 1162 SLEKAMESGEIITGTINGKVKGGLTV 1187
+L A GE ITG +N V G T+
Sbjct: 564 TLPSARGQGEPITGRLN--VAEGTTI 587
>TIGR_CMR|VC_2430 [details] [associations]
symbol:VC_2430 "topoisomerase IV, subunit A" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0006265 "DNA topological change"
evidence=ISS] [GO:0007059 "chromosome segregation" evidence=ISS]
[GO:0009340 "DNA topoisomerase IV complex" evidence=ISS]
InterPro:IPR002205 InterPro:IPR005742 InterPro:IPR006691
InterPro:IPR013758 InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989
SMART:SM00434 GO:GO:0005524 GO:GO:0005694 GO:GO:0007059
GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 KO:K02621 ProtClustDB:PRK05561
OMA:YKAGDSY TIGRFAMs:TIGR01062 HSSP:P09097 GO:GO:0009340 PIR:F82078
RefSeq:NP_232060.1 ProteinModelPortal:Q9KPE0 SMR:Q9KPE0
DNASU:2612972 GeneID:2612972 KEGG:vch:VC2430 PATRIC:20083879
Uniprot:Q9KPE0
Length = 761
Score = 808 (289.5 bits), Expect = 1.9e-83, Sum P(2) = 1.9e-83
Identities = 182/462 (39%), Positives = 288/462 (62%)
Query: 20 SYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGETMGKYHP 79
+YL+Y+M VI+ RALP + DGLKPV RR+++AM E+ + + K AR VG+ +GKYHP
Sbjct: 22 AYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKKSARTVGDVLGKYHP 81
Query: 80 HGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGD-SAAAMRYTECRLNKISNELLIDL 138
HGD + Y+A+V MAQ FS R LVDGQGN+G+ D S AAMRYTE +L+K + LL +L
Sbjct: 82 HGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTEAKLSKFAEILLSEL 141
Query: 139 DKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGVLYVL 198
+ T+D+ N+DG +EP +LP R+P++L+NG +GIAVGMAT+IPPHN+ EV D ++++
Sbjct: 142 GQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPPHNVREVADATIHLI 201
Query: 199 HNPECSINDLIKIIPAPDFPT-AGIIYGLSSVHDGYYTGKGRVIIRAKTHIEEFNRENRT 257
NP + DL++ + PDFPT A II + Y +G+G + +RA + +E +
Sbjct: 202 DNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSIKMRAV-----WCKEG-S 255
Query: 258 AIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESD-KSGMRIVIELKRNEIP-EI 315
I+I LP+QV+ LLE+I+ ++ KKL + +LRDESD ++ RIVI + N + ++
Sbjct: 256 DIVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRIVIVPRSNRVDCDL 315
Query: 316 VLNKLYKQTQLQNTF--GMNMLALVNGQPKLLNLKEILYYFILHRKEVIKRRTIFELRKA 373
++N L+ T L+ +F +NM+ L N +P++ L +IL +I R+E ++ R + L K
Sbjct: 316 LMNHLFASTDLEKSFRVNLNMIGLDN-RPQVKGLVQILSEWISFRRETVRSRLQYRLDKV 374
Query: 374 REYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIGFNKKNYNT 433
HIL+GL IA N+D I+IIR+ P+ ++ + ++L D+ + K
Sbjct: 375 LARLHILQGLLIAYLNLDEVIEIIRNEDDPKA----VLMARFDLTDIQADAILDTK-LRH 429
Query: 434 ISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKI 475
++K+ + D + + +E+L +RL N+ +K+I
Sbjct: 430 LAKLEEMKIRGEQDELEKERKKLEELLGSE-RRLNNLLKKEI 470
Score = 69 (29.3 bits), Expect = 1.9e-83, Sum P(2) = 1.9e-83
Identities = 29/116 (25%), Positives = 51/116 (43%)
Query: 564 AQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKVWQIPQGSRNSRGKP 623
++ R G+ + E Q+ +D IL +N GR+ + +PQ S+ +G
Sbjct: 618 SKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLSKG-KGNK 676
Query: 624 IINMFSLKNKEKITVILPLSNNKRDFPKNNYVFM---STSLGIVKKTLLSNFSNPR 676
IIN+ + K K + V+ +N P+ + + LG+ K + L NF R
Sbjct: 677 IINIPAAKAKTREEVL----SNLMVLPQGASITLYAGKRKLGL-KVSDLDNFRGER 727
Score = 66 (28.3 bits), Expect = 3.9e-83, Sum P(2) = 3.9e-83
Identities = 31/158 (19%), Positives = 63/158 (39%)
Query: 686 SNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAMGRSARGVIGMRLEKKQKVIALL 745
+ +++L A + L SD G++ +++ + + G + I +
Sbjct: 532 AGDNYLTHACGKSNQQAVFLGSD-GRSYSLESHTLPSARGQGEPITGRLNVAEGTTIRQV 590
Query: 746 VSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKR-NGKVVAATLVNRYHE 804
V + Q L ++ GYG + NR K +I++ N V A L N E
Sbjct: 591 VMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDN--DE 648
Query: 805 IMLITTGGILIRTRVSEIRKMGRSTQGVILITVENKSK 842
I+ IT G ++ + ++ ++ + I+ K+K
Sbjct: 649 ILAITNQGRMLLFPIKDLPQLSKGKGNKIINIPAAKAK 686
Score = 38 (18.4 bits), Expect = 3.5e-80, Sum P(2) = 3.5e-80
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 1162 SLEKAMESGEIITGTINGKVKGGLTV 1187
+L A GE ITG +N V G T+
Sbjct: 564 TLPSARGQGEPITGRLN--VAEGTTI 587
>TIGR_CMR|SO_3897 [details] [associations]
symbol:SO_3897 "DNA topoisomerase IV, A subunit"
species:211586 "Shewanella oneidensis MR-1" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0009340 "DNA
topoisomerase IV complex" evidence=ISS] InterPro:IPR002205
InterPro:IPR005742 InterPro:IPR006691 InterPro:IPR013758
InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989 SMART:SM00434
GO:GO:0005524 GO:GO:0005694 EMBL:AE014299 GenomeReviews:AE014299_GR
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 KO:K02621 ProtClustDB:PRK05561
HOGENOM:HOG000076277 OMA:YKAGDSY TIGRFAMs:TIGR01062 HSSP:P09097
RefSeq:NP_719428.1 ProteinModelPortal:Q8EAK5 SMR:Q8EAK5
GeneID:1171537 KEGG:son:SO_3897 PATRIC:23527476 Uniprot:Q8EAK5
Length = 758
Score = 778 (278.9 bits), Expect = 3.6e-83, Sum P(2) = 3.6e-83
Identities = 178/467 (38%), Positives = 283/467 (60%)
Query: 19 KSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGETMGKYH 78
++YL+Y+M VI+ RALP + DGLKPV RR+++AM E+ K AR VG+ +GKYH
Sbjct: 23 EAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLSAQSKHKKSARTVGDVLGKYH 82
Query: 79 PHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGD-SAAAMRYTECRLNKISNELLID 137
PHGD + Y+A+V MAQ FS R LVDGQGN+G+ D S AAMRYTE RL+K S LL +
Sbjct: 83 PHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTEARLSKFSEVLLSE 142
Query: 138 LDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGVLYV 197
L + T+++ +N+DG KEP VLP R+P++L+NG +GIAVGMAT+IPPHN+ E+++ + +
Sbjct: 143 LGQGTVEWGANFDGTLKEPKVLPARLPHILLNGITGIAVGMATDIPPHNVRELVNACVAL 202
Query: 198 LHNPECSINDLIKIIPAPDFPT-AGIIYGLSSVHDGYYTGKGRVIIRAKTHIEEFNRENR 256
L P+ + L+ +P PD+PT A II + + Y TG+G + RA +E
Sbjct: 203 LDEPKLDLEQLMAYVPGPDYPTEAEIITPAADIAKIYETGRGSLKARAVYSVEAGE---- 258
Query: 257 TAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESD-KSGMRIVIELKRNEIP-E 314
I+I LP+Q + +LE I+ ++ KKL +++LRDESD ++ +R+VI + N + +
Sbjct: 259 --IVITALPHQASSGKILELIAAQMQAKKLPMVADLRDESDHENPVRLVIVPRSNRVDCD 316
Query: 315 IVLNKLYKQTQLQNTFGMNMLAL-VNGQPKLLNLKEILYYFILHRKEVIKRRTIFELRKA 373
++ L+ T L+ +F +N+ L ++G+P++ LK++L ++ R + ++RR + L K
Sbjct: 317 QLMAHLFATTDLEKSFRVNLNVLGLDGRPRVKGLKDLLTEWLEFRVDTVRRRLEYRLDKV 376
Query: 374 REYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIGFNKKNYNT 433
HILE L IA NID I+IIR P K +++ + +NL D + +
Sbjct: 377 LARLHILEALMIAFLNIDEVIEIIRFHDEP---KAELM-ARFNLTD-KQAEAILELKLRH 431
Query: 434 ISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYE 480
++K+ D + + +++L +RL + +K++I E
Sbjct: 432 LAKLEEFKIKAEQDELEAEREKLEQLLGSE-RRLKTLIKKELIQDGE 477
Score = 97 (39.2 bits), Expect = 3.6e-83, Sum P(2) = 3.6e-83
Identities = 71/342 (20%), Positives = 141/342 (41%)
Query: 449 YKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVIDLTDILSNSKRXXXXXXXXXX 508
+ L+D QA+ IL++ L+ L +E+ KI + + + + L +L + +R
Sbjct: 414 FNLTDKQAEAILELKLRHLAKLEEFKIKAEQDELEAEREKLEQLLGSERRLKTLIKKELI 473
Query: 509 XXKNKYGSHKKN--IRRSEIILNAINPSTEDLIASQDMVITLSNLGYIKSQPISEYRAQK 566
YG +++ + R E A+ + ++L S+ + + LS+ G+++S + A+
Sbjct: 474 QDGETYGDDRRSPIVERHES--KAL--TEQELTPSEPVTVVLSDKGWVRSAKGHDIDAES 529
Query: 567 RGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKVWQIPQGSRNSRGKPIIN 626
+ + NQ + +I + GR + +P S S+G+PI
Sbjct: 530 LSYKAGDQYLCSAMGRSNQAAV-----FI---DSSGRAFATDSHSLP--SARSQGEPITT 579
Query: 627 MFSLKNKEKITVILPLSNNKRDF---PKNNYVFMSTSLGIVK-----KTLLSNFSNPRKS 678
F++ E + ++ L +++ F Y F+ T +V K LLS +N +
Sbjct: 580 RFNMAPGETMQHVI-LGEDEQCFLLATDAGYGFICTFNDMVSRNKAGKALLSLPTNAKSL 638
Query: 679 GIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAMGRSARGVIGMRLEKK 738
++ N + I A +G ++LFS + + G G+ R + +
Sbjct: 639 PPKPID-RNREMSILAITNEGR--MLLFS-----LEALPQLSKGKGNKIIGIPSERAKNR 690
Query: 739 QKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKG 780
++++ L SV G K TL +H RG +G
Sbjct: 691 EELMTHLQLVPADTSVTLWA--GKRKLTLKPSDLEHYRGERG 730
Score = 73 (30.8 bits), Expect = 1.2e-80, Sum P(2) = 1.2e-80
Identities = 30/140 (21%), Positives = 60/140 (42%)
Query: 705 LFSDS-GKAVRFNENSVRAMGRSARGVIGMRLEKKQ-KVIALLVSNNQKQSVLTATENGY 762
+F DS G+A + +S+ + RS I R + + ++ +Q L AT+ GY
Sbjct: 551 VFIDSSGRAFATDSHSLPS-ARSQGEPITTRFNMAPGETMQHVILGEDEQCFLLATDAGY 609
Query: 763 GKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVSEI 822
G + N+ K ++S+ TN ++ NR I+ IT G ++ + +
Sbjct: 610 GFICTFNDMVSRNKAGKALLSLPTNAKSLPPKPIDR-NREMSILAITNEGRMLLFSLEAL 668
Query: 823 RKMGRSTQGVILITVENKSK 842
++ + I+ ++K
Sbjct: 669 PQLSKGKGNKIIGIPSERAK 688
>TIGR_CMR|NSE_0408 [details] [associations]
symbol:NSE_0408 "ribosomal protein S1" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:CP000237
GenomeReviews:CP000237_GR InterPro:IPR022967 SMART:SM00316
eggNOG:COG0539 HOGENOM:HOG000044052 KO:K02945 OMA:QLGQDPW
RefSeq:YP_506295.1 ProteinModelPortal:Q2GE01 STRING:Q2GE01
GeneID:3932255 KEGG:nse:NSE_0408 PATRIC:22680873
ProtClustDB:CLSK2527828 BioCyc:NSEN222891:GHFU-431-MONOMER
Uniprot:Q2GE01
Length = 553
Score = 780 (279.6 bits), Expect = 2.6e-76, P = 2.6e-76
Identities = 175/543 (32%), Positives = 295/543 (54%)
Query: 1047 EQAHLLNTSKMNINQVVNQILDC----FATLFKESLLRHDMRSGEVISAEVIGLDRNFVI 1102
+Q + T+K + + +++ D F T+ +E +R G+++ + + +FV+
Sbjct: 3 KQQFYITTNKASERRFYSEVPDYNEEDFTTILEERFSDSLIREGDMVEGVIKSISPHFVL 62
Query: 1103 INADLKSEAFIPIEEFKNDNGELEVKIGDFVSVAIESLENGFGDTILSRDKAKRLASWLS 1162
+N LKSE IP+++F +D G LEV G + V +E E G G+ +LS KA + W
Sbjct: 63 VNLGLKSEGKIPVQQF-HDLGTLEV--GSKIIVYVEKTETGSGNLVLSYTKALKQKVWNR 119
Query: 1163 LEKAMESG--EIITGTINGKVKGGLTVLTNGLKAFLPGSLVDIRPVKDTTPFEGKTMDFK 1220
L + +G E + G I +K G V GL AFLP S +D+RPV D G + F+
Sbjct: 120 LYEMYLNGSDEDVMGVILYTIKSGCIVEVEGLNAFLPNSHLDVRPVSDPATLVGVKLKFR 179
Query: 1221 VIKLDRKRNNVVLSHRAVIEESMGEERQKLIETLKEGCTVKGVVKNITDYGAFIDL---- 1276
++K+D K + +S R + R + I T+KEG + G VK+I YG F+ +
Sbjct: 180 ILKMDPKTGKIFVSRRKALGAVHEAARSEYISTIKEGDIIDGRVKSIASYGVFVQIHESD 239
Query: 1277 --GGIDGLLHITDIAWRRVKHPSEILTIGQDISTKILKYDQEKNRVSLGMKQLGIDPWIG 1334
G +DGLL++ DI+W RV HPS I ++GQ++ K++ D EK R+SLG+KQL +PW
Sbjct: 240 KVGVVDGLLYVNDISWARVTHPSSIYSVGQEVRVKVIAVDPEKGRISLGVKQLTENPWKD 299
Query: 1335 LSFRYPRGTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEMDWINKNVTPSKIVQLNDTVE 1394
+S +Y G G VT++ DYG FV +E+G+EGLVH E+ W + P + N V
Sbjct: 300 VSKKYTPGNVYPGVVTSVEDYGIFVRLEEGVEGLVHSGEISWTREK--P--LFLPNSKVN 355
Query: 1395 IMILEINEERRRISLGMKQCKDNPWENFXXXXXXXXXXXXXXXXXTDFGIFIGL-DGN-- 1451
+M+L ++EE +I+L +KQC DNPW+ F TD GI + L D
Sbjct: 356 VMLLSVDEEGHKIALSVKQCSDNPWKKFLDAYGLGVVVKCKVVEITDSGIVLTLLDPGYS 415
Query: 1452 -IDGLIHLSDLSWTDPGEEIIRNFKKGDEIEAIILSIDVEKERISLGIKQLEGDPFNNYV 1510
+ G + L+++SW+ + ++ F GDE+EA ++ ++ ++ R+ IK +E DPF ++
Sbjct: 416 YVRGYVRLANISWSQNPRKELKRFTIGDEVEAKLVHVNPDRGRVMFNIKYVEYDPFEEFI 475
Query: 1511 N-INDKGSLVNGIIKSIDTNKGAIIQLSNEVEGYLRISEEDNKHEKKLKIGENIDVLTVL 1569
+ +N+K ++N + ++ + G I++ +E + S+ +L +G+++ +
Sbjct: 476 SRVNEK-DIINAKVIRVEDD-GIYIEVREGLEFFTAQSDVS-----RLTVGQHLSFVVCS 528
Query: 1570 IDH 1572
DH
Sbjct: 529 KDH 531
Score = 140 (54.3 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 50/253 (19%), Positives = 108/253 (42%)
Query: 1160 WLSLEKAMESGEIITGTINGKVKGGLTV-LTNGLKAFLPGSLVDIRPVKDTTPF-EGKTM 1217
W + K G + G + G+ V L G++ + +I ++ F +
Sbjct: 297 WKDVSKKYTPGNVYPGVVTSVEDYGIFVRLEEGVEGLVHSG--EISWTREKPLFLPNSKV 354
Query: 1218 DFKVIKLDRKRNNVVLSHRAVIEESMGEERQKLIETLKEGCTVKGVVKNITDYG---AFI 1274
+ ++ +D + + + LS +++ +K ++ G VK V ITD G +
Sbjct: 355 NVMLLSVDEEGHKIALS----VKQCSDNPWKKFLDAYGLGVVVKCKVVEITDSGIVLTLL 410
Query: 1275 DLGG--IDGLLHITDIAW-RRVKHPSEILTIGQDISTKILKYDQEKNRVSLGMKQLGIDP 1331
D G + G + + +I+W + + + TIG ++ K++ + ++ RV +K + DP
Sbjct: 411 DPGYSYVRGYVRLANISWSQNPRKELKRFTIGDEVEAKLVHVNPDRGRVMFNIKYVEYDP 470
Query: 1332 WIGLSFRYPRGTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEMDWINKNVTPSKIVQLND 1391
+ R + KV + D G ++E+ +G+E S++ + S +V D
Sbjct: 471 FEEFISRVNEKDIINAKVIRVEDDGIYIEVREGLEFFTAQSDVSRLTVGQHLSFVVCSKD 530
Query: 1392 TVEIMILEINEER 1404
+ + I +E+
Sbjct: 531 HYSVKLEIITDEK 543
Score = 41 (19.5 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 147 SNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGVLYV 197
S Y KE ++ R+ ++ S G+ V I + V+DG+LYV
Sbjct: 207 SEYISTIKEGDIIDGRVKSI---ASYGVFV----QIHESDKVGVVDGLLYV 250
>UNIPROTKB|A8ISW5 [details] [associations]
symbol:CHLREDRAFT_115934 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR002205 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 SMART:SM00434 GO:GO:0005524 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0009295 GO:GO:0006265 eggNOG:COG0188 KO:K02469 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 EMBL:DS496122
RefSeq:XP_001692279.1 ProteinModelPortal:A8ISW5 STRING:A8ISW5
EnsemblPlants:EDP04229 GeneID:5717863 KEGG:cre:CHLREDRAFT_115934
BioCyc:CHLAMY:CHLREDRAFT_115934-MONOMER Uniprot:A8ISW5
Length = 315
Score = 746 (267.7 bits), Expect = 1.1e-72, P = 1.1e-72
Identities = 145/303 (47%), Positives = 202/303 (66%)
Query: 26 MSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGETMGKYHPHGDVSI 85
MSVIV RALPDVRDGLKPVHRR+L+AMHE+ + +P+ KCARVVGE +GK+HPHGD ++
Sbjct: 1 MSVIVSRALPDVRDGLKPVHRRILYAMHELGLVATKPYKKCARVVGEVLGKFHPHGDNAV 60
Query: 86 YDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTECRLNKISNELLI-DLDKETID 144
YD+LVR+AQ FS+R LV G GNFGS+D D AAAMRYTECRL + LL+ DL T++
Sbjct: 61 YDSLVRLAQDFSMRVPLVQGHGNFGSVDADPAAAMRYTECRLAPAAEGLLLGDLGAATVE 120
Query: 145 FISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGVLYVLHNPECS 204
+ +D ++EP VLP +PNLL+NGS GIAVG+A+ IPPHNL EV+ + ++ NPE +
Sbjct: 121 WRDTFDASQQEPVVLPAVVPNLLVNGSQGIAVGLASTIPPHNLGEVVAALRRLIANPEVT 180
Query: 205 INDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRAKTHIEEFNRENRTAIIIDEL 264
+L++ + PD+PT G + + Y TG+G E I+I EL
Sbjct: 181 TEELMECVRGPDYPTGGQLITGPELLAAYRTGRGSAAAEKLAQAAETADGGPELIVITEL 240
Query: 265 PYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVIELKRNEIPEIVLNKLYKQT 324
PY V K + + + ++++RDESD++GMR+V+E+K E++L +L+K T
Sbjct: 241 PYSVCKVGVKPLTTTCQRTAHCAGVADVRDESDRTGMRVVVEVKMGWNAELLLAQLFKDT 300
Query: 325 QLQ 327
+LQ
Sbjct: 301 RLQ 303
>TIGR_CMR|CJE_0972 [details] [associations]
symbol:CJE_0972 "ribosomal protein S1" species:195099
"Campylobacter jejuni RM1221" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539
HOGENOM:HOG000044052 KO:K02945 ProtClustDB:PRK06299
RefSeq:YP_178970.1 ProteinModelPortal:Q5HUR5 STRING:Q5HUR5
GeneID:3231483 KEGG:cjr:CJE0972 PATRIC:20043727 OMA:SRRYPQG
BioCyc:CJEJ195099:GJC0-992-MONOMER Uniprot:Q5HUR5
Length = 556
Score = 702 (252.2 bits), Expect = 5.7e-68, P = 5.7e-68
Identities = 161/538 (29%), Positives = 276/538 (51%)
Query: 1084 RSGEVISAE--VIGLDRNFVIINADLKSEAFIPIEEFKNDNGELEVKIGDFVSVAIESLE 1141
+S E + E ++ + + V ++ KSE + + E + DN +L +GD + VA+
Sbjct: 30 KSREEATTEGVIVEIKNDEVYVDIGKKSEGILALSEIQGDNSKLLFNVGDSIKVAVMG-S 88
Query: 1142 NGFGDTILSRDKAKRLASWLSLEKAMESGE--IITGTINGKVKGGLTVLT-NGLKAFLPG 1198
G G ++LS KA R + K + + I T + GK KGGL V+ N ++ FLP
Sbjct: 89 RG-GRSLLSHKKALRKEKVIEFIKNYQENQDDIFTVKVVGKNKGGLIVVDENDVEFFLPK 147
Query: 1199 SLVDIRPVKDTTPFEGKTMDFKVIKLDRKRNNVVLSHRAVIEESMGEERQKLIETLKEGC 1258
S K+T GKT K+IK+D+ ++++S + +++ + ++ + ++
Sbjct: 148 SQYGF---KETNNIIGKTFKVKIIKIDKDEQSIIVSRKKTLDDERRKRKELINNVAQQED 204
Query: 1259 TVKGVVKNITDYGAFIDLGGIDGLLHITDIAWRRVKHPSEILTIGQDISTKILKYDQEKN 1318
++G+VK IT YG F+D+GG+DGL+H ++I+++ +P + G + K++KYD+E+
Sbjct: 205 LIEGIVKKITTYGMFVDVGGVDGLVHYSEISYKGPVNPGTLYKEGDKVPVKVIKYDKERK 264
Query: 1319 RVSLGMKQLGIDPWIGLSFRYPRGTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEMDWIN 1378
+SL +K DPW + G + V+N+ YGAFV++ IEG +HISE+ W +
Sbjct: 265 HLSLSIKAALPDPWSEIKDTLDVGDTIKVIVSNIEPYGAFVDLGNDIEGFLHISEISW-D 323
Query: 1379 KNV-TPSKIVQLNDTVEIMILEINEERRRISLGMKQCKDNPWENFXXXXXXXXXXXXXXX 1437
KN+ P + +++ ++EIN RR+ + ++ P++ F
Sbjct: 324 KNIKNPKDYINKGQEIDVEVIEINPNERRLRVSLRNLLSRPFDEFMKSYKIADVVEGEIT 383
Query: 1438 XXTDFGIFIGLDGNIDGLIHLSDLSWTDPGEEIIRNFKKGDEIEAIILSIDVEKERISLG 1497
T FG F+ L G I+GL+H D SW D ++ F +GD+I+ I+ ID E ++ISL
Sbjct: 384 SVTSFGAFVKL-GGIEGLLHNEDASW-DRNDKCKDKFSQGDKIKVKIIKIDEENQKISLS 441
Query: 1498 IKQLEGDPFNNYVNINDKGSLVNGIIKSIDTNKGAIIQLSNEVEGYLRISEEDNKHEKKL 1557
K+L P Y I+ G +V G I+ I + G ++LS V+ + + + L
Sbjct: 442 AKELNSSPVQEYAKIHKVGDIVKGTIRDIK-DFGVFVELSKNVDALIHKEDISTSMLENL 500
Query: 1558 KIGENIDVLTVLIDHKTRYIQLSFXXXXXXXXXXLLTSINANTISGTTNLGLILKAEL 1615
KIG++I+ V ID K I+LS +L IN + LG I+K +L
Sbjct: 501 KIGDDIEAAIVFIDEKKNRIRLSVKNLVRIKEREVLNEINNDD---KVTLGDIIKDQL 555
Score = 493 (178.6 bits), Expect = 1.4e-46, Sum P(2) = 1.4e-46
Identities = 134/462 (29%), Positives = 235/462 (50%)
Query: 1076 ESLLRHDMRSGEVISAEVIGLDRNFVIINADLKSEAFIPIEE--FKNDNGELEVKIGDFV 1133
E + + ++ + +V+G ++ +I+ + E F+P + FK N IG
Sbjct: 108 EFIKNYQENQDDIFTVKVVGKNKGGLIVVDENDVEFFLPKSQYGFKETNNI----IGKTF 163
Query: 1134 SVAIESLENGFGDTILSRDKA---KRLASWLSLEKAMESGEIITGTINGKVKGGLTVLTN 1190
V I ++ I+SR K +R + + ++I G + G+ V
Sbjct: 164 KVKIIKIDKDEQSIIVSRKKTLDDERRKRKELINNVAQQEDLIEGIVKKITTYGMFVDVG 223
Query: 1191 GLKAFLPGSLVDIR-PVKDTTPF-EGKTMDFKVIKLDRKRNNVVLSHRAVIEESMGEERQ 1248
G+ + S + + PV T + EG + KVIK D++R ++ LS +A + + E +
Sbjct: 224 GVDGLVHYSEISYKGPVNPGTLYKEGDKVPVKVIKYDKERKHLSLSIKAALPDPWSEIK- 282
Query: 1249 KLIETLKEGCTVKGVVKNITDYGAFIDLGG-IDGLLHITDIAW-RRVKHPSEILTIGQDI 1306
+TL G T+K +V NI YGAF+DLG I+G LHI++I+W + +K+P + + GQ+I
Sbjct: 283 ---DTLDVGDTIKVIVSNIEPYGAFVDLGNDIEGFLHISEISWDKNIKNPKDYINKGQEI 339
Query: 1307 STKILKYDQEKNRVSLGMKQLGIDPWIGLSFRYPRGTRLLGKVTNLTDYGAFVEIEKGIE 1366
++++ + + R+ + ++ L P+ Y + G++T++T +GAFV++ GIE
Sbjct: 340 DVEVIEINPNERRLRVSLRNLLSRPFDEFMKSYKIADVVEGEITSVTSFGAFVKLG-GIE 398
Query: 1367 GLVHISEMDWINKNVTPSKIVQLNDTVEIMILEINEERRRISLGMKQCKDNPWENFXXXX 1426
GL+H + W + K Q D +++ I++I+EE ++ISL K+ +P + +
Sbjct: 399 GLLHNEDASWDRNDKCKDKFSQ-GDKIKVKIIKIDEENQKISLSAKELNSSPVQEYAKIH 457
Query: 1427 XXXXXXXXXXXXXTDFGIFIGLDGNIDGLIHLSDLSWTDPGEEIIRNFKKGDEIEAIILS 1486
DFG+F+ L N+D LIH D+S + ++ N K GD+IEA I+
Sbjct: 458 KVGDIVKGTIRDIKDFGVFVELSKNVDALIHKEDISTS-----MLENLKIGDDIEAAIVF 512
Query: 1487 IDVEKERISLGIKQL----EGDPFNNYVNINDKGSLVNGIIK 1524
ID +K RI L +K L E + N +N +DK +L IIK
Sbjct: 513 IDEKKNRIRLSVKNLVRIKEREVLNE-INNDDKVTL-GDIIK 552
Score = 217 (81.4 bits), Expect = 7.5e-14, P = 7.5e-14
Identities = 89/390 (22%), Positives = 172/390 (44%)
Query: 1240 EESMGEERQKLIETLKEGCTVKGVVKNITDYGAFIDLGG-IDGLLHITDIAWRRVKHPSE 1298
EE G+ + ++ +E T +GV+ I + ++D+G +G+L +++I K
Sbjct: 18 EEDFGQLLEAFDKS-REEATTEGVIVEIKNDEVYVDIGKKSEGILALSEIQGDNSKL--- 73
Query: 1299 ILTIGQDISTKILKYDQEKNRVSLGMKQLGIDPWIGLSFRYPRGTR--LLGKVTNLTDYG 1356
+ +G I ++ ++ +S K L + I Y KV G
Sbjct: 74 LFNVGDSIKVAVMGSRGGRSLLS-HKKALRKEKVIEFIKNYQENQDDIFTVKVVGKNKGG 132
Query: 1357 AFVEIEKGIEGLVHISEMDWINKNVTPSKIVQLNDTVEIMILEINEERRRISLGMKQCKD 1416
V E +E + S+ + N I+ T ++ I++I+++ + I + K+ D
Sbjct: 133 LIVVDENDVEFFLPKSQYGFKETN----NII--GKTFKVKIIKIDKDEQSIIVSRKKTLD 186
Query: 1417 NPW----ENFXXXXXXXXXXXXXXXXXTDFGIFIGLDGNIDGLIHLSDLSWTDPGEEIIR 1472
+ E T +G+F+ + G +DGL+H S++S+ P
Sbjct: 187 DERRKRKELINNVAQQEDLIEGIVKKITTYGMFVDV-GGVDGLVHYSEISYKGPVNPGTL 245
Query: 1473 NFKKGDEIEAIILSIDVEKERISLGIKQLEGDPFNNYVNINDKGSLVNGIIKSIDTNKGA 1532
+K+GD++ ++ D E++ +SL IK DP++ + D G + I+ +I+ GA
Sbjct: 246 -YKEGDKVPVKVIKYDKERKHLSLSIKAALPDPWSEIKDTLDVGDTIKVIVSNIEPY-GA 303
Query: 1533 IIQLSNEVEGYLRISE---EDN-KHEKK-LKIGENIDVLTVLIDHKTRYIQLSFXXXXXX 1587
+ L N++EG+L ISE + N K+ K + G+ IDV + I+ R +++S
Sbjct: 304 FVDLGNDIEGFLHISEISWDKNIKNPKDYINKGQEIDVEVIEINPNERRLRVSLRNLLSR 363
Query: 1588 XXXXLLTSIN-ANTISG----TTNLGLILK 1612
+ S A+ + G T+ G +K
Sbjct: 364 PFDEFMKSYKIADVVEGEITSVTSFGAFVK 393
Score = 39 (18.8 bits), Expect = 1.4e-46, Sum P(2) = 1.4e-46
Identities = 27/121 (22%), Positives = 51/121 (42%)
Query: 692 IGAALTDGSYDIMLFSDSGKAVR-FNENSVRAMGRSARGVIGMRLEKKQKVIALLVSNNQ 750
+ + DG D + D G+ + F+++ A + GVI +E K + + + +
Sbjct: 4 VNKKVQDGVDDYLEEEDFGQLLEAFDKSREEA---TTEGVI---VEIKNDEVYVDIGK-K 56
Query: 751 KQSVLTATE-NGYGKRTL------IKEYTKHNRGTKGIISIKTNKRNGKVVAATLVNRYH 803
+ +L +E G + L IK +RG + ++S K R KV+ + Y
Sbjct: 57 SEGILALSEIQGDNSKLLFNVGDSIKVAVMGSRGGRSLLSHKKALRKEKVIE--FIKNYQ 114
Query: 804 E 804
E
Sbjct: 115 E 115
Score = 37 (18.1 bits), Expect = 2.3e-46, Sum P(2) = 2.3e-46
Identities = 6/12 (50%), Positives = 10/12 (83%)
Query: 516 SHKKNIRRSEII 527
SHKK +R+ ++I
Sbjct: 96 SHKKALRKEKVI 107
>UNIPROTKB|O06147 [details] [associations]
symbol:rpsA "30S ribosomal protein S1" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0040007 "growth" evidence=IMP] InterPro:IPR000110
InterPro:IPR003029 Pfam:PF00575 PIRSF:PIRSF002111 PRINTS:PR00681
PROSITE:PS50126 GO:GO:0005829 GO:GO:0005886 GO:GO:0040007
GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0006412 EMBL:BX842577 GO:GO:0003723
GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539
KO:K02945 PIR:D70559 RefSeq:NP_216146.1 RefSeq:NP_336122.1
RefSeq:YP_006515019.1 ProteinModelPortal:O06147 SMR:O06147
PhosSite:P12061590 PRIDE:O06147 EnsemblBacteria:EBMYCT00000003837
EnsemblBacteria:EBMYCT00000072148 GeneID:13316409 GeneID:885188
GeneID:924199 KEGG:mtc:MT1666 KEGG:mtu:Rv1630 KEGG:mtv:RVBD_1630
PATRIC:18125426 TubercuList:Rv1630 HOGENOM:HOG000044053 OMA:WQQFART
ProtClustDB:PRK07899 Uniprot:O06147
Length = 481
Score = 684 (245.8 bits), Expect = 7.5e-67, Sum P(2) = 7.5e-67
Identities = 135/340 (39%), Positives = 220/340 (64%)
Query: 1086 GEVISAEVIGLDRNFVIINADLKSEAFIPIEEF--KNDNGELEV-KIGDFVSVAIESLEN 1142
G+++ ++ +DR+ V+++ K+E IP E K+D EV +GD V + + E+
Sbjct: 36 GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVEALVLTKED 95
Query: 1143 GFGDTILSRDKAKRLASWLSLEKAMESGEIITGTINGKVKGGLTVLTNGLKAFLPGSLVD 1202
G ILS+ +A+ +W ++E E E + GT+ VKGGL +L GL+ FLP SLV+
Sbjct: 96 KEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGL-ILDIGLRGFLPASLVE 154
Query: 1203 IRPVKDTTPFEGKTMDFKVIKLDRKRNNVVLSHRAVIEESMGEERQKLIETLKEGCTVKG 1262
+R V+D P+ GK ++ K+I+LD+ RNNVVLS RA +E++ E R + + L++G KG
Sbjct: 155 MRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNNLQKGTIRKG 214
Query: 1263 VVKNITDYGAFIDLGGIDGLLHITDIAWRRVKHPSEILTIGQDISTKILKYDQEKNRVSL 1322
VV +I ++GAF+DLGG+DGL+H+++++W+ + HPSE++ +G +++ ++L D ++ RVSL
Sbjct: 215 VVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSL 274
Query: 1323 GMKQLGIDPWIGLSFRYPRGTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEMDWINKNVT 1382
+K DPW + + G + GKVT L +GAFV +E+GIEGLVHISE+ + V
Sbjct: 275 SLKATQEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEV- 333
Query: 1383 PSKIVQLNDTVEIMILEINEERRRISLGMKQCKDNPWENF 1422
P ++V + D + +++I+ ERRRISL +KQ ++ E F
Sbjct: 334 PDQVVAVGDDAMVKVIDIDLERRRISLSLKQANEDYTEEF 373
Score = 364 (133.2 bits), Expect = 9.0e-33, Sum P(2) = 9.0e-33
Identities = 105/355 (29%), Positives = 182/355 (51%)
Query: 1165 KAMESGEIITGTINGKVKGGLTVLTNGLKA--FLPGSLVDIRPVKDTTPFE----GKTMD 1218
K G+I+ GTI KV +L G K +P + I+ D P E G ++
Sbjct: 31 KYFNDGDIVEGTIV-KVDRDEVLLDIGYKTEGVIPARELSIK--HDVDPNEVVSVGDEVE 87
Query: 1219 FKVIKLDRKRNNVVLSH-RAVIEESMGEERQKLIETLKEGC-TVKGVVKNITDYGAFIDL 1276
V+ + K ++LS RA E + G IE LKE VKG V + G +D+
Sbjct: 88 ALVLTKEDKEGRLILSKKRAQYERAWGT-----IEALKEKDEAVKGTVIEVVKGGLILDI 142
Query: 1277 GGIDGLLHITDIAWRRVKHPSEILTIGQDISTKILKYDQEKNRVSLG----MKQLGIDPW 1332
G + G L + + RRV+ IG++I KI++ D+ +N V L ++Q +
Sbjct: 143 G-LRGFLPASLVEMRRVRDLQPY--IGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVR 199
Query: 1333 IGLSFRYPRGTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEMDWINKNVT-PSKIVQLND 1391
+GT G V+++ ++GAFV++ G++GLVH+SE+ W K++ PS++VQ+ D
Sbjct: 200 SEFLNNLQKGTIRKGVVSSIVNFGAFVDLG-GVDGLVHVSELSW--KHIDHPSEVVQVGD 256
Query: 1392 TVEIMILEINEERRRISLGMKQCKDNPWENFXXXXXXXXXXXXXXXXXTDFGIFIGLDGN 1451
V + +L+++ +R R+SL +K +++PW +F FG F+ ++
Sbjct: 257 EVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEEG 316
Query: 1452 IDGLIHLSDLS--WTDPGEEIIRNFKKGDEIEAIILSIDVEKERISLGIKQLEGD 1504
I+GL+H+S+L+ + ++++ GD+ ++ ID+E+ RISL +KQ D
Sbjct: 317 IEGLVHISELAERHVEVPDQVVA---VGDDAMVKVIDIDLERRRISLSLKQANED 368
Score = 284 (105.0 bits), Expect = 2.1e-20, Sum P(2) = 2.1e-20
Identities = 79/346 (22%), Positives = 168/346 (48%)
Query: 1249 KLIETLKEGCTVKGVVKNITDYGAFIDLG-GIDGLLHITDIAWRRVKHPSEILTIGQDIS 1307
K I+ +G V+G + + +D+G +G++ +++ + P+E++++G ++
Sbjct: 28 KTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSVGDEVE 87
Query: 1308 TKILKYDQEKNRVSLGMKQLGID-PWIGLSFRYPRGTRLLGKVTNLTDYGAFVEIEKGIE 1366
+L + ++ R+ L K+ + W + + + G V + G ++I G+
Sbjct: 88 ALVLTKEDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDI--GLR 145
Query: 1367 GLVHIS--EMDWINKNVTPSKIVQLNDTVEIMILEINEERRRISLG----MKQCKDNPWE 1420
G + S EM + +++ P + +E I+E+++ R + L ++Q +
Sbjct: 146 GFLPASLVEMRRV-RDLQP----YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRS 200
Query: 1421 NFXXXXXXXXXXXXXXXXXTDFGIFIGLDGNIDGLIHLSDLSWT--DPGEEIIRNFKKGD 1478
F +FG F+ L G +DGL+H+S+LSW D E+++ GD
Sbjct: 201 EFLNNLQKGTIRKGVVSSIVNFGAFVDL-GGVDGLVHVSELSWKHIDHPSEVVQ---VGD 256
Query: 1479 EIEAIILSIDVEKERISLGIKQLEGDPFNNYVNINDKGSLVNGIIKSIDTNKGAIIQLSN 1538
E+ +L +D+++ER+SL +K + DP+ ++ + G +V G + + GA +++
Sbjct: 257 EVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPGKVTKL-VPFGAFVRVEE 315
Query: 1539 EVEGYLRISEEDNKH----EKKLKIGENIDVLTVLIDHKTRYIQLS 1580
+EG + ISE +H ++ + +G++ V + ID + R I LS
Sbjct: 316 GIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLS 361
Score = 38 (18.4 bits), Expect = 7.5e-67, Sum P(2) = 7.5e-67
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 525 EIILNAINPSTEDLIASQDMVITLSNLGYI 554
++ +N I S+ED +A+ D I N G I
Sbjct: 10 QVAVNDIG-SSEDFLAAIDKTIKYFNDGDI 38
>TIGR_CMR|BA_1519 [details] [associations]
symbol:BA_1519 "ribosomal protein S1" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
HSSP:P05055 KO:K02945 HOGENOM:HOG000044053 ProtClustDB:PRK06676
RefSeq:NP_843970.1 RefSeq:YP_018142.1 RefSeq:YP_027677.1
ProteinModelPortal:Q81SX5 DNASU:1083667
EnsemblBacteria:EBBACT00000012330 EnsemblBacteria:EBBACT00000016288
EnsemblBacteria:EBBACT00000024070 GeneID:1083667 GeneID:2817299
GeneID:2849711 KEGG:ban:BA_1519 KEGG:bar:GBAA_1519 KEGG:bat:BAS1408
OMA:DMMEEIN BioCyc:BANT260799:GJAJ-1482-MONOMER
BioCyc:BANT261594:GJ7F-1544-MONOMER Uniprot:Q81SX5
Length = 382
Score = 597 (215.2 bits), Expect = 9.3e-57, P = 9.3e-57
Identities = 120/347 (34%), Positives = 214/347 (61%)
Query: 1082 DMRSGEVISAEVIGLDRNFVIINADLKSEAFIPIEEFKNDNGELE---VKIGDFVSVAIE 1138
+++ G+V++ V ++ V++N K++ IPI E N + E V++ + + +
Sbjct: 14 ELQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASDVVELDQTLELKVI 73
Query: 1139 SLENGFGDTILSRDKAKRLASWLSLEKAMESGEIITGTINGKVKGGLTVLTNGLKAFLPG 1198
LE D +LS+ +W+ L++ SG + T+ V GGL V+ G++ F+P
Sbjct: 74 KLEEN--DLVLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIVNGGL-VVDLGVRGFIPA 130
Query: 1199 SLVDIRPVKDTTPFEGKTMDFKVIKLDRKRNNVVLSHRAVIEESMGEERQKLIETLKEGC 1258
SLV++ V+D T ++GKT+ K+++LDR++N V+LSH+AV+E + ++++ I +LKEG
Sbjct: 131 SLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGD 190
Query: 1259 TVKGVVKNITDYGAFIDLGGIDGLLHITDIAWRRVKHPSEILTIGQDISTKILKYDQEKN 1318
V+G V+ +TD+GAF+++GG+DGL+HI+ I+ RV+ PSE+L GQ + K+L D +
Sbjct: 191 VVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQ 250
Query: 1319 RVSLGMKQLGIDPWIGLSFRYPRGTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEMDWIN 1378
R+SL +K PW + G G V L +GAFVEI G+EGLVH+S++ N
Sbjct: 251 RISLSIKAAQPGPWENVGGEVKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQI--AN 308
Query: 1379 KNV-TPSKIVQLNDTVEIMILEINEERRRISLGMKQC--KDNPWENF 1422
++V P++++++ V++ +LE++ +RISL +K+ ++N E++
Sbjct: 309 RHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEALEENNVTEDY 355
Score = 337 (123.7 bits), Expect = 4.8e-29, P = 4.8e-29
Identities = 102/347 (29%), Positives = 180/347 (51%)
Query: 1165 KAMESGEIITGTINGKVKGGLTVLTNGLKA--FLPGS-LVDIRPVKDTTPFE-GKTMDFK 1220
K ++ G+++TG++ KV+ ++ G K +P S L ++ K + E +T++ K
Sbjct: 13 KELQVGDVVTGSVT-KVEEKQVLVNVGYKTDGVIPISELANVHIEKASDVVELDQTLELK 71
Query: 1221 VIKLDRKRNNVVLSHRAVIEESMGEERQKLIETLKEGCTVKGVVKNITDYGAFIDLGGID 1280
VIKL+ N++VLS RAV E E Q E G VK+I + G +DLG +
Sbjct: 72 VIKLEE--NDLVLSKRAVDAEKAWVELQ---EKFNSGHVFDVTVKDIVNGGLVVDLG-VR 125
Query: 1281 GLLHITDIAWRRVKHPSEILTIGQDISTKILKYDQEKNRVSLGMK---QLGIDPWIGLSF 1337
G + + + V+ ++ G+ ++ KI++ D+EKNRV L K +L +D +
Sbjct: 126 GFIPASLVEVHYVEDFTDYK--GKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAI 183
Query: 1338 R-YPRGTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEMDWINKNVTPSKIVQLNDTVEIM 1396
G + G V LTD+GAFV + G++GLVHIS++ + PS++++ V++
Sbjct: 184 SSLKEGDVVEGTVQRLTDFGAFVNVG-GVDGLVHISQISH-ERVEQPSEVLEQGQKVKVK 241
Query: 1397 ILEINEERRRISLGMKQCKDNPWENFXXXXXXXXXXXXXXXXXTDFGIFIGLDGNIDGLI 1456
+L ++ + +RISL +K + PWEN FG F+ + ++GL+
Sbjct: 242 VLSVDADTQRISLSIKAAQPGPWENVGGEVKAGDIREGVVKRLVTFGAFVEILPGVEGLV 301
Query: 1457 HLSDLS---WTDPGEEIIRNFKKGDEIEAIILSIDVEKERISLGIKQ 1500
H+S ++ +P E + + G E++ +L + V ++RISL IK+
Sbjct: 302 HVSQIANRHVKNPNEVL----EMGQEVKVKVLEVHVAEKRISLSIKE 344
Score = 284 (105.0 bits), Expect = 2.1e-23, P = 2.1e-23
Identities = 94/392 (23%), Positives = 185/392 (47%)
Query: 1241 ESMGEERQKLIETLKEGCTVKGVVKNITDYGAFIDLG-GIDGLLHITDIAWRRVKHPSEI 1299
E M EE E L+ G V G V + + +++G DG++ I+++A ++ S++
Sbjct: 3 EKMNEEVMDSKE-LQVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASDV 61
Query: 1300 LTIGQDISTKILKYDQEKNRVSLGMKQLGIDP-WIGLSFRYPRGTRLLGKVTNLTDYGAF 1358
+ + Q + K++K E+N + L + + + W+ L ++ G V ++ + G
Sbjct: 62 VELDQTLELKVIKL--EENDLVLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIVNGGLV 119
Query: 1359 VEIEKGIEGLVHIS--EMDWINKNVTPSKIVQLNDTVEIMILEINEERRRISLGMKQCK- 1415
V++ G+ G + S E+ ++ ++ T K T+ + I+E++ E+ R+ L K
Sbjct: 120 VDL--GVRGFIPASLVEVHYV-EDFTDYK----GKTLAVKIVELDREKNRVILSHKAVVE 172
Query: 1416 ---DNPWENFXXXXXXXXXXXXXXXXXTDFGIFIGLDGNIDGLIHLSDLSWTDPGEEIIR 1472
D+ + TDFG F+ + G +DGL+H+S +S + E+
Sbjct: 173 LELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNV-GGVDGLVHISQISH-ERVEQPSE 230
Query: 1473 NFKKGDEIEAIILSIDVEKERISLGIKQLEGDPFNNYVNINDKGSLVNGIIKSIDTNKGA 1532
++G +++ +LS+D + +RISL IK + P+ N G + G++K + T GA
Sbjct: 231 VLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENVGGEVKAGDIREGVVKRLVTF-GA 289
Query: 1533 IIQLSNEVEGYLRISEEDNKHEKK----LKIGENIDVLTVLIDHKTRYIQLSFXXXXXXX 1588
+++ VEG + +S+ N+H K L++G+ + V + + + I LS
Sbjct: 290 FVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKVKVLEVHVAEKRISLSIKEALEEN 349
Query: 1589 XXXL-LTSINANTISGTTNLGLILKAELEKIK 1619
+ N S T L I+ +L+K+K
Sbjct: 350 NVTEDYSQYEPNADSATFQLSDIIGEQLKKLK 381
>GENEDB_PFALCIPARUM|PFL1120c [details] [associations]
symbol:PFL1120c "DNA GyrAse a-subunit, putative"
species:5833 "Plasmodium falciparum" [GO:0020011 "apicoplast"
evidence=IDA] InterPro:IPR002205 InterPro:IPR006691
InterPro:IPR013758 InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989
SMART:SM00434 GO:GO:0005524 GO:GO:0005694 EMBL:AE014188
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0020011 GO:GO:0006265
KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
GenomeReviews:AE014188_GR RefSeq:XP_001350630.1 HSSP:P09097
ProteinModelPortal:Q8I0X3 EnsemblProtists:PFL1120c:mRNA
GeneID:811276 KEGG:pfa:PFL1120c EuPathDB:PlasmoDB:PF3D7_1223300
HOGENOM:HOG000281067 ProtClustDB:CLSZ2514562 Uniprot:Q8I0X3
Length = 1222
Score = 619 (223.0 bits), Expect = 1.1e-56, Sum P(4) = 1.1e-56
Identities = 178/528 (33%), Positives = 277/528 (52%)
Query: 7 EVISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNN-LWNRPFVK 65
E + + E + KS+L YA +I+ R L D RDGLK V RR++++M+E+N + + + K
Sbjct: 171 EYYDVEICEILSKSFLSYANFLILNRCLCDYRDGLKTVQRRIIWSMYEINKGIDKKGYKK 230
Query: 66 CARVVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTEC 125
CAR+VGE +GKYHPHGD S+YDALVR+AQ L+ G GNFGS++ + AAAMRYTE
Sbjct: 231 CARIVGEVIGKYHPHGDKSVYDALVRLAQKHHNNNLLIKGYGNFGSVEYN-AAAMRYTEA 289
Query: 126 RLNKISNELLID-LDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPP 184
+++ ++L+D ++ E +++I N+DG E+EP VL ++IP LLING SGIAV + ++IP
Sbjct: 290 KISSFCYDILLDEINDENVEYIKNFDGNEREPKVLCSKIPLLLINGCSGIAVSILSSIPC 349
Query: 185 HNLTEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYY-TGKGRVIIR 243
HNL +V + + L N ++L II PDF T GII + Y +GKG IR
Sbjct: 350 HNLIDVANCCINFLINENIRDDELFHIIKGPDFSTGGIIISKYDILKNIYNSGKGNFEIR 409
Query: 244 AKTHIEEFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSGM-R 302
+ E + + +I + +N S +E S + K K I NL + +
Sbjct: 410 SNVFFEYIKNDKK---VITK---HINDLSSIEN-SDIDKLTKKIIIKNLPPNVKPNELIE 462
Query: 303 IVIEL---KRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRK 359
+I L K+NE I+L ++ +++ ++ M ++ + ++ + L Y +
Sbjct: 463 NIINLLNDKKNEHDNILL-RIRDESEKED---MRIVLELKKHSQIEQIHNFLSYLFKYTN 518
Query: 360 EVIKRRTIFE-LRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLP 418
I F + Y I L +N I+ I+ T E KNK ++ N+
Sbjct: 519 MQISYHCNFVCIGYENTYTQFSLKSFIKLW-CNNRIKFIK---TNYEIKNKNLQKQLNII 574
Query: 419 DVSKIIGFNKKNYNTISKIN-NISKLQ----NNDMYKLSDIQAQEILKMPLQRLTNMEQK 473
D+ II + T + N NI ++Q NN +KL+ Q + IL + LQ+L N++
Sbjct: 575 DLYLIIQNKILDIITFFQKNQNIEQIQLYLKNN--FKLNPEQIKYILSIKLQKLINIKNI 632
Query: 474 KIINKYENVIKKVIDLTD-ILSNSKRXXXXXXXXXXXXKNKYGSHKKN 520
I++ N I I L D I++N + KNKYG H N
Sbjct: 633 DFISQ-RNKIMHQIKLNDEIINNVQNIKNLIIQELIYIKNKYGIHNLN 679
Score = 154 (59.3 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 91/428 (21%), Positives = 169/428 (39%)
Query: 389 NIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIGFNKKNYNTISKINNISKLQNNDM 448
N N+ + +T + KN + + +S I N KN + S + N
Sbjct: 724 NHSNYTHDLPNTDNVTKDKNVVETNVHKNIHISSDISNNIKNSDKNSSLTKNQDSDNMMP 783
Query: 449 YKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVIDLTDILSNSKRXXXXXXXXXX 508
Y+ + I + L ++ + N ++ I+ Y IKK I + + L N
Sbjct: 784 YRNTYIDS---LDNNMKDIYNNDEVLILITYGGYIKK-IKINEKLKNHSNNIIKLSNVKY 839
Query: 509 XXKNKYGSHKKNIRRSEIILNAINPSTEDLIASQDMVITLSN-LGYIKSQPISEYRAQKR 567
K K N + N + E +D L+N +G+ + +
Sbjct: 840 ILKEN--EEKLNENNKRLKFNDLQKGNEQE-KYKDNEQKLNNDIGHNINIQNNNNDNNNN 896
Query: 568 GGRGKKAMMTKDEDW----INQLFIANTHDYILCFSNYGRLYWLKVWQIPQGSRNSRGKP 623
++ +E++ I + + D IL NY + + L V+ + S +S+G P
Sbjct: 897 NNDNNNVLLLNEEEYNSYKIKKSILVRNRDKILLTDNYNKAFLLNVYDLHLSSYDSKGTP 956
Query: 624 IINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFSNPRKSGI-IA 682
I N + + + IT I NK+ Y+ + + G +K F +K GI +
Sbjct: 957 I-NQI-IHSSKNITGITKFQENKK------YLIVCSENGKMKVINNDVFLKRKKKGIKLF 1008
Query: 683 VNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAMGRSARGVIGMRLEKKQKVI 742
N N F + + + + ++ + +G ++F +S + +++ G + L K KV+
Sbjct: 1009 KNKKNIYF----SYCNFNDNCIVGTKNGYIIQFPLSSFKISKKNSLGNKCISLAKNDKVV 1064
Query: 743 ALL-VSNNQKQ----SVLTATENGYGKRTLIKEYTKHNRGTKG--IISIK---TNKRNGK 792
LL NN+K ++ T+NG+GK + E + KG I+ K T K N K
Sbjct: 1065 DLLSYENNEKNLKNYKIIFVTKNGFGKMINLNELKIQKKKGKGHRIMKFKKSKTRKDNKK 1124
Query: 793 VVAATLVN 800
+ +N
Sbjct: 1125 DIEKKQIN 1132
Score = 63 (27.2 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 42/190 (22%), Positives = 88/190 (46%)
Query: 266 YQVNKKSLLEKIS-----QLVKEKKLECISNLRDESDKSGMRIVIELKRN-EI-PEIVLN 318
Y++ K+L ++++ +++ K L+ I+ + +++ +I + LK N ++ PE +
Sbjct: 560 YEIKNKNLQKQLNIIDLYLIIQNKILDIITFF--QKNQNIEQIQLYLKNNFKLNPEQI-- 615
Query: 319 KLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVIKRRTIFELRKAR-EYA 377
K +LQ + + ++ + K+++ + L I++ + IK I EL + +Y
Sbjct: 616 KYILSIKLQKLINIKNIDFISQRNKIMHQIK-LNDEIINNVQNIKNLIIQELIYIKNKYG 674
Query: 378 -HILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIGFNKKNY-NTIS 435
H L I + I S P +KNK I T+N + N NY + +
Sbjct: 675 IHNLNKQCIIPSTPKYKYSYINSEYHPNFSKNKQIIDTYNTVSTNDN-NINHSNYTHDLP 733
Query: 436 KINNISKLQN 445
+N++K +N
Sbjct: 734 NTDNVTKDKN 743
Score = 58 (25.5 bits), Expect = 1.1e-56, Sum P(4) = 1.1e-56
Identities = 21/70 (30%), Positives = 37/70 (52%)
Query: 894 YRLVTLSAINNNIQ-LDNELELVILIKKLNYNFLGKEVYLNGVNVTTLIRNEKVSNNASK 952
YR + +++NN++ + N E++ILI Y G Y+ + + ++N SNN K
Sbjct: 784 YRNTYIDSLDNNMKDIYNNDEVLILI---TYG--G---YIKKIKINEKLKNH--SNNIIK 833
Query: 953 IAKFKNIRKE 962
++ K I KE
Sbjct: 834 LSNVKYILKE 843
Score = 51 (23.0 bits), Expect = 1.1e-56, Sum P(4) = 1.1e-56
Identities = 20/67 (29%), Positives = 32/67 (47%)
Query: 1120 NDNGELEVKIGDFVSVAIESLE----NGFGDTILS---RDKAKRLASWLSLEKAMESGEI 1172
NDN + K G + + S + N G+ +S DK L S+ + EK +++ +I
Sbjct: 1022 NDNCIVGTKNGYIIQFPLSSFKISKKNSLGNKCISLAKNDKVVDLLSYENNEKNLKNYKI 1081
Query: 1173 ITGTING 1179
I T NG
Sbjct: 1082 IFVTKNG 1088
Score = 48 (22.0 bits), Expect = 5.1e-55, Sum P(3) = 5.1e-55
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 1507 NNYVNI--NDKGSLV---NGIIKSIDTNK------GAIIQLSNEVEGYLRISEED-NKHE 1554
NN +I ND+ ++ G IK I N+ II+LSN V+ L+ +EE N++
Sbjct: 794 NNMKDIYNNDEVLILITYGGYIKKIKINEKLKNHSNNIIKLSN-VKYILKENEEKLNENN 852
Query: 1555 KKLKIGE 1561
K+LK +
Sbjct: 853 KRLKFND 859
Score = 42 (19.8 bits), Expect = 4.9e-55, Sum P(4) = 4.9e-55
Identities = 16/64 (25%), Positives = 29/64 (45%)
Query: 798 LVNRYHEIMLITTGGILIRTRVSEIRKMGRST----QGVILITVENKSKLCGVQRLCKIT 853
+ N ++LIT GG + + +++E K + V I EN+ KL + K
Sbjct: 799 IYNNDEVLILITYGGYIKKIKINEKLKNHSNNIIKLSNVKYILKENEEKLNENNKRLKFN 858
Query: 854 MIKK 857
++K
Sbjct: 859 DLQK 862
Score = 41 (19.5 bits), Expect = 1.1e-56, Sum P(4) = 1.1e-56
Identities = 18/66 (27%), Positives = 29/66 (43%)
Query: 628 FSLKNKEKITVILPLSNNKRDFPKNNYVF-MSTSLGIVK-KTLLSN--FSNPRKSGIIAV 683
FS KNK+ I +S N + +NY + + + K K ++ N S I+
Sbjct: 703 FS-KNKQIIDTYNTVSTNDNNINHSNYTHDLPNTDNVTKDKNVVETNVHKNIHISSDISN 761
Query: 684 NLSNED 689
N+ N D
Sbjct: 762 NIKNSD 767
>UNIPROTKB|Q8I0X3 [details] [associations]
symbol:GyrA "DNA gyrase subunit A;evidence=inferred from
direct assay" species:36329 "Plasmodium falciparum 3D7" [GO:0020011
"apicoplast" evidence=IDA] InterPro:IPR002205 InterPro:IPR006691
InterPro:IPR013758 InterPro:IPR013760 Pfam:PF00521 Pfam:PF03989
SMART:SM00434 GO:GO:0005524 GO:GO:0005694 EMBL:AE014188
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0020011 GO:GO:0006265
KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
GenomeReviews:AE014188_GR RefSeq:XP_001350630.1 HSSP:P09097
ProteinModelPortal:Q8I0X3 EnsemblProtists:PFL1120c:mRNA
GeneID:811276 KEGG:pfa:PFL1120c EuPathDB:PlasmoDB:PF3D7_1223300
HOGENOM:HOG000281067 ProtClustDB:CLSZ2514562 Uniprot:Q8I0X3
Length = 1222
Score = 619 (223.0 bits), Expect = 1.1e-56, Sum P(4) = 1.1e-56
Identities = 178/528 (33%), Positives = 277/528 (52%)
Query: 7 EVISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNN-LWNRPFVK 65
E + + E + KS+L YA +I+ R L D RDGLK V RR++++M+E+N + + + K
Sbjct: 171 EYYDVEICEILSKSFLSYANFLILNRCLCDYRDGLKTVQRRIIWSMYEINKGIDKKGYKK 230
Query: 66 CARVVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTEC 125
CAR+VGE +GKYHPHGD S+YDALVR+AQ L+ G GNFGS++ + AAAMRYTE
Sbjct: 231 CARIVGEVIGKYHPHGDKSVYDALVRLAQKHHNNNLLIKGYGNFGSVEYN-AAAMRYTEA 289
Query: 126 RLNKISNELLID-LDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPP 184
+++ ++L+D ++ E +++I N+DG E+EP VL ++IP LLING SGIAV + ++IP
Sbjct: 290 KISSFCYDILLDEINDENVEYIKNFDGNEREPKVLCSKIPLLLINGCSGIAVSILSSIPC 349
Query: 185 HNLTEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYY-TGKGRVIIR 243
HNL +V + + L N ++L II PDF T GII + Y +GKG IR
Sbjct: 350 HNLIDVANCCINFLINENIRDDELFHIIKGPDFSTGGIIISKYDILKNIYNSGKGNFEIR 409
Query: 244 AKTHIEEFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSGM-R 302
+ E + + +I + +N S +E S + K K I NL + +
Sbjct: 410 SNVFFEYIKNDKK---VITK---HINDLSSIEN-SDIDKLTKKIIIKNLPPNVKPNELIE 462
Query: 303 IVIEL---KRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRK 359
+I L K+NE I+L ++ +++ ++ M ++ + ++ + L Y +
Sbjct: 463 NIINLLNDKKNEHDNILL-RIRDESEKED---MRIVLELKKHSQIEQIHNFLSYLFKYTN 518
Query: 360 EVIKRRTIFE-LRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLP 418
I F + Y I L +N I+ I+ T E KNK ++ N+
Sbjct: 519 MQISYHCNFVCIGYENTYTQFSLKSFIKLW-CNNRIKFIK---TNYEIKNKNLQKQLNII 574
Query: 419 DVSKIIGFNKKNYNTISKIN-NISKLQ----NNDMYKLSDIQAQEILKMPLQRLTNMEQK 473
D+ II + T + N NI ++Q NN +KL+ Q + IL + LQ+L N++
Sbjct: 575 DLYLIIQNKILDIITFFQKNQNIEQIQLYLKNN--FKLNPEQIKYILSIKLQKLINIKNI 632
Query: 474 KIINKYENVIKKVIDLTD-ILSNSKRXXXXXXXXXXXXKNKYGSHKKN 520
I++ N I I L D I++N + KNKYG H N
Sbjct: 633 DFISQ-RNKIMHQIKLNDEIINNVQNIKNLIIQELIYIKNKYGIHNLN 679
Score = 154 (59.3 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 91/428 (21%), Positives = 169/428 (39%)
Query: 389 NIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIGFNKKNYNTISKINNISKLQNNDM 448
N N+ + +T + KN + + +S I N KN + S + N
Sbjct: 724 NHSNYTHDLPNTDNVTKDKNVVETNVHKNIHISSDISNNIKNSDKNSSLTKNQDSDNMMP 783
Query: 449 YKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVIDLTDILSNSKRXXXXXXXXXX 508
Y+ + I + L ++ + N ++ I+ Y IKK I + + L N
Sbjct: 784 YRNTYIDS---LDNNMKDIYNNDEVLILITYGGYIKK-IKINEKLKNHSNNIIKLSNVKY 839
Query: 509 XXKNKYGSHKKNIRRSEIILNAINPSTEDLIASQDMVITLSN-LGYIKSQPISEYRAQKR 567
K K N + N + E +D L+N +G+ + +
Sbjct: 840 ILKEN--EEKLNENNKRLKFNDLQKGNEQE-KYKDNEQKLNNDIGHNINIQNNNNDNNNN 896
Query: 568 GGRGKKAMMTKDEDW----INQLFIANTHDYILCFSNYGRLYWLKVWQIPQGSRNSRGKP 623
++ +E++ I + + D IL NY + + L V+ + S +S+G P
Sbjct: 897 NNDNNNVLLLNEEEYNSYKIKKSILVRNRDKILLTDNYNKAFLLNVYDLHLSSYDSKGTP 956
Query: 624 IINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFSNPRKSGI-IA 682
I N + + + IT I NK+ Y+ + + G +K F +K GI +
Sbjct: 957 I-NQI-IHSSKNITGITKFQENKK------YLIVCSENGKMKVINNDVFLKRKKKGIKLF 1008
Query: 683 VNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAMGRSARGVIGMRLEKKQKVI 742
N N F + + + + ++ + +G ++F +S + +++ G + L K KV+
Sbjct: 1009 KNKKNIYF----SYCNFNDNCIVGTKNGYIIQFPLSSFKISKKNSLGNKCISLAKNDKVV 1064
Query: 743 ALL-VSNNQKQ----SVLTATENGYGKRTLIKEYTKHNRGTKG--IISIK---TNKRNGK 792
LL NN+K ++ T+NG+GK + E + KG I+ K T K N K
Sbjct: 1065 DLLSYENNEKNLKNYKIIFVTKNGFGKMINLNELKIQKKKGKGHRIMKFKKSKTRKDNKK 1124
Query: 793 VVAATLVN 800
+ +N
Sbjct: 1125 DIEKKQIN 1132
Score = 63 (27.2 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 42/190 (22%), Positives = 88/190 (46%)
Query: 266 YQVNKKSLLEKIS-----QLVKEKKLECISNLRDESDKSGMRIVIELKRN-EI-PEIVLN 318
Y++ K+L ++++ +++ K L+ I+ + +++ +I + LK N ++ PE +
Sbjct: 560 YEIKNKNLQKQLNIIDLYLIIQNKILDIITFF--QKNQNIEQIQLYLKNNFKLNPEQI-- 615
Query: 319 KLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVIKRRTIFELRKAR-EYA 377
K +LQ + + ++ + K+++ + L I++ + IK I EL + +Y
Sbjct: 616 KYILSIKLQKLINIKNIDFISQRNKIMHQIK-LNDEIINNVQNIKNLIIQELIYIKNKYG 674
Query: 378 -HILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIGFNKKNY-NTIS 435
H L I + I S P +KNK I T+N + N NY + +
Sbjct: 675 IHNLNKQCIIPSTPKYKYSYINSEYHPNFSKNKQIIDTYNTVSTNDN-NINHSNYTHDLP 733
Query: 436 KINNISKLQN 445
+N++K +N
Sbjct: 734 NTDNVTKDKN 743
Score = 58 (25.5 bits), Expect = 1.1e-56, Sum P(4) = 1.1e-56
Identities = 21/70 (30%), Positives = 37/70 (52%)
Query: 894 YRLVTLSAINNNIQ-LDNELELVILIKKLNYNFLGKEVYLNGVNVTTLIRNEKVSNNASK 952
YR + +++NN++ + N E++ILI Y G Y+ + + ++N SNN K
Sbjct: 784 YRNTYIDSLDNNMKDIYNNDEVLILI---TYG--G---YIKKIKINEKLKNH--SNNIIK 833
Query: 953 IAKFKNIRKE 962
++ K I KE
Sbjct: 834 LSNVKYILKE 843
Score = 51 (23.0 bits), Expect = 1.1e-56, Sum P(4) = 1.1e-56
Identities = 20/67 (29%), Positives = 32/67 (47%)
Query: 1120 NDNGELEVKIGDFVSVAIESLE----NGFGDTILS---RDKAKRLASWLSLEKAMESGEI 1172
NDN + K G + + S + N G+ +S DK L S+ + EK +++ +I
Sbjct: 1022 NDNCIVGTKNGYIIQFPLSSFKISKKNSLGNKCISLAKNDKVVDLLSYENNEKNLKNYKI 1081
Query: 1173 ITGTING 1179
I T NG
Sbjct: 1082 IFVTKNG 1088
Score = 48 (22.0 bits), Expect = 5.1e-55, Sum P(3) = 5.1e-55
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 1507 NNYVNI--NDKGSLV---NGIIKSIDTNK------GAIIQLSNEVEGYLRISEED-NKHE 1554
NN +I ND+ ++ G IK I N+ II+LSN V+ L+ +EE N++
Sbjct: 794 NNMKDIYNNDEVLILITYGGYIKKIKINEKLKNHSNNIIKLSN-VKYILKENEEKLNENN 852
Query: 1555 KKLKIGE 1561
K+LK +
Sbjct: 853 KRLKFND 859
Score = 42 (19.8 bits), Expect = 4.9e-55, Sum P(4) = 4.9e-55
Identities = 16/64 (25%), Positives = 29/64 (45%)
Query: 798 LVNRYHEIMLITTGGILIRTRVSEIRKMGRST----QGVILITVENKSKLCGVQRLCKIT 853
+ N ++LIT GG + + +++E K + V I EN+ KL + K
Sbjct: 799 IYNNDEVLILITYGGYIKKIKINEKLKNHSNNIIKLSNVKYILKENEEKLNENNKRLKFN 858
Query: 854 MIKK 857
++K
Sbjct: 859 DLQK 862
Score = 41 (19.5 bits), Expect = 1.1e-56, Sum P(4) = 1.1e-56
Identities = 18/66 (27%), Positives = 29/66 (43%)
Query: 628 FSLKNKEKITVILPLSNNKRDFPKNNYVF-MSTSLGIVK-KTLLSN--FSNPRKSGIIAV 683
FS KNK+ I +S N + +NY + + + K K ++ N S I+
Sbjct: 703 FS-KNKQIIDTYNTVSTNDNNINHSNYTHDLPNTDNVTKDKNVVETNVHKNIHISSDISN 761
Query: 684 NLSNED 689
N+ N D
Sbjct: 762 NIKNSD 767
>TIGR_CMR|GSU_1200 [details] [associations]
symbol:GSU_1200 "ribosomal protein S1" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 KO:K02945 HOGENOM:HOG000044053
RefSeq:NP_952253.1 ProteinModelPortal:Q74DW5 GeneID:2685786
KEGG:gsu:GSU1200 PATRIC:22025170 OMA:NEMRFTT ProtClustDB:PRK06676
BioCyc:GSUL243231:GH27-1176-MONOMER Uniprot:Q74DW5
Length = 402
Score = 558 (201.5 bits), Expect = 1.3e-52, P = 1.3e-52
Identities = 113/360 (31%), Positives = 204/360 (56%)
Query: 1058 NINQVVNQILDCFATLFKESLLRHD-MRSGEVISAEVIGLDRNFVIINADLKSEAFIPIE 1116
N+N+ + + FA LF++S R + +R G + A V+ + +V ++ K E + +
Sbjct: 7 NVNEPAEE--ESFAELFEKSNRRTERLRPGSKVDARVLKIGAEWVFLDIGSKGEGVMERK 64
Query: 1117 EFKNDNGELEVKIGDFVSVAIESLENGFGDTILSRDKAKRLASWLSLEKAMESGEIITGT 1176
E + +G L V GD + V +E + + A +LE A +G + G
Sbjct: 65 ELLDKDGNLTVAEGDTIPVWFVKVERN--EMRFTTKVGTGQAGLSALEDAYRAGIPVEGN 122
Query: 1177 INGKVKGGLTVLTNG-LKAFLPGSLVDIRPVKDTTPFEGKTMDFKVIKLDRKRNNVVLSH 1235
+ ++KGG + G ++AF P S + +R + F G+ + FKV++ + N+VLSH
Sbjct: 123 VEKEIKGGFEIKVGGTVRAFCPYSQISLRRAANPAEFVGRQLLFKVVEFAERGRNIVLSH 182
Query: 1236 RAVIEESMGEERQKLIETLKEGCTVKGVVKNITDYGAFIDLGGIDGLLHITDIAWRRVKH 1295
RA++EE ++R+ L +TLKEG T+ G V + +GAF+D+GG++GL+ I++ W RVK
Sbjct: 183 RAILEEEERQKREALKDTLKEGTTLTGTVTRLMPFGAFVDIGGVEGLIPISEAGWSRVKE 242
Query: 1296 PSEILTIGQDISTKILKYDQEKNRVSLGMKQLGIDPWIGLSFRYPRGTRLLGKVTNLTDY 1355
++L++G+ ++ + + D E N++SL ++ + DPW G++ R+P G+ G V L +
Sbjct: 243 IGDVLSVGEQVTALVKRIDWENNKISLSLRDVQADPWEGIAERFPEGSYHTGTVARLAPF 302
Query: 1356 GAFVEIEKGIEGLVHISEMDWINKNVTPSKIVQLNDTVEIMILEINEERRRISLGMKQCK 1415
GAFV + GI+GL+HIS++ + P ++++ D VE+ + ++ E RR+SL + K
Sbjct: 303 GAFVTLAPGIDGLIHISKLGAGKRIAHPREVLKEGDAVEVTVEGVDRESRRLSLALAATK 362
Score = 250 (93.1 bits), Expect = 5.6e-18, P = 5.6e-18
Identities = 80/299 (26%), Positives = 135/299 (45%)
Query: 1210 TPFEGKTMDFKVIKLDRKRNNVVLSHRAVIEESMGEERQKLIE-TLKEGCTVKGVVKNIT 1268
T EG T+ +K++R N + R + G+ +E + G V+G V+
Sbjct: 74 TVAEGDTIPVWFVKVER--NEM----RFTTKVGTGQAGLSALEDAYRAGIPVEGNVEKEI 127
Query: 1269 DYGAFIDLGG-IDGLLHITDIAWRRVKHPSEILTIGQDISTKILKYDQEKNRVSLG---- 1323
G I +GG + + I+ RR +P+E +G+ + K++++ + + L
Sbjct: 128 KGGFEIKVGGTVRAFCPYSQISLRRAANPAEF--VGRQLLFKVVEFAERGRNIVLSHRAI 185
Query: 1324 MKQLGIDPWIGLSFRYPRGTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEMDWIN-KNVT 1382
+++ L GT L G VT L +GAFV+I G+EGL+ ISE W K +
Sbjct: 186 LEEEERQKREALKDTLKEGTTLTGTVTRLMPFGAFVDIG-GVEGLIPISEAGWSRVKEI- 243
Query: 1383 PSKIVQLNDTVEIMILEINEERRRISLGMKQCKDNPWENFXXXXXXXXXXXXXXXXXTDF 1442
++ + + V ++ I+ E +ISL ++ + +PWE F
Sbjct: 244 -GDVLSVGEQVTALVKRIDWENNKISLSLRDVQADPWEGIAERFPEGSYHTGTVARLAPF 302
Query: 1443 GIFIGLDGNIDGLIHLSDLSWTDPGEEIIRN---FKKGDEIEAIILSIDVEKERISLGI 1498
G F+ L IDGLIH+S L G+ I K+GD +E + +D E R+SL +
Sbjct: 303 GAFVTLAPGIDGLIHISKLG---AGKRIAHPREVLKEGDAVEVTVEGVDRESRRLSLAL 358
Score = 169 (64.5 bits), Expect = 6.3e-09, P = 6.3e-09
Identities = 76/356 (21%), Positives = 152/356 (42%)
Query: 1240 EESMGE--ERQ-KLIETLKEGCTVKGVVKNITDYGAFIDLGGI-DGLLHITDIAWRRVKH 1295
EES E E+ + E L+ G V V I F+D+G +G++ ++ K
Sbjct: 14 EESFAELFEKSNRRTERLRPGSKVDARVLKIGAEWVFLDIGSKGEGVMERKELL---DKD 70
Query: 1296 PSEILTIGQDISTKILKYDQEKNRVS--LGMKQLGIDPWIGLSFRYPRGTRLLGKVTNLT 1353
+ + G I +K ++ + R + +G Q G+ L Y G + G V
Sbjct: 71 GNLTVAEGDTIPVWFVKVERNEMRFTTKVGTGQAGLS---ALEDAYRAGIPVEGNVEKEI 127
Query: 1354 DYGAFVEIEKGIEGLVHISEMDWINKNVTPSKIVQLNDTVEIMILEINEERRRISLG--- 1410
G +++ + S++ + + P++ V + ++E E R I L
Sbjct: 128 KGGFEIKVGGTVRAFCPYSQIS-LRRAANPAEFV--GRQLLFKVVEFAERGRNIVLSHRA 184
Query: 1411 -MKQCKDNPWENFXXXXXXXXXXXXXXXXXTDFGIFIGLDGNIDGLIHLSDLSWTDPGEE 1469
+++ + E FG F+ + G ++GLI +S+ W+ +E
Sbjct: 185 ILEEEERQKREALKDTLKEGTTLTGTVTRLMPFGAFVDI-GGVEGLIPISEAGWSRV-KE 242
Query: 1470 IIRNFKKGDEIEAIILSIDVEKERISLGIKQLEGDPFNNYVNINDKGSLVNGIIKSIDTN 1529
I G+++ A++ ID E +ISL ++ ++ DP+ +GS G + +
Sbjct: 243 IGDVLSVGEQVTALVKRIDWENNKISLSLRDVQADPWEGIAERFPEGSYHTGTVARL-AP 301
Query: 1530 KGAIIQLSNEVEGYLRISE----EDNKHEKK-LKIGENIDVLTVLIDHKTRYIQLS 1580
GA + L+ ++G + IS+ + H ++ LK G+ ++V +D ++R + L+
Sbjct: 302 FGAFVTLAPGIDGLIHISKLGAGKRIAHPREVLKEGDAVEVTVEGVDRESRRLSLA 357
>TIGR_CMR|SO_2403 [details] [associations]
symbol:SO_2403 "cytidylate kinase" species:211586
"Shewanella oneidensis MR-1" [GO:0004127 "cytidylate kinase
activity" evidence=ISS] [GO:0015949 "nucleobase-containing small
molecule interconversion" evidence=ISS] HAMAP:MF_00238
InterPro:IPR003136 InterPro:IPR011994 Pfam:PF02224 GO:GO:0005524
GO:GO:0005737 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0004127
eggNOG:COG0283 KO:K00945 OMA:HIDTGAM ProtClustDB:PRK00023
PANTHER:PTHR21299:SF2 TIGRFAMs:TIGR00017 HOGENOM:HOG000242849
RefSeq:NP_717993.1 ProteinModelPortal:Q8EEH9 SMR:Q8EEH9
GeneID:1170120 KEGG:son:SO_2403 PATRIC:23524425 Uniprot:Q8EEH9
Length = 230
Score = 492 (178.3 bits), Expect = 1.5e-45, P = 1.5e-45
Identities = 101/215 (46%), Positives = 147/215 (68%)
Query: 860 PVITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELELVILIK 919
PV+TIDGP+ +GKGT++QL+A LG+ LDSGA+YR++ L+AI+++++L+NE + +L
Sbjct: 6 PVVTIDGPSGAGKGTISQLLAKHLGWQLLDSGAIYRVLALAAIHHDVELENEESITLLAS 65
Query: 920 KLNYNFL-GKE-----VYLNGVNVTTLIRNEKVSNNASKIAKFKNIRKELFKIQVKFRKF 973
L+ FL G E V L G +VTT IR ++ SN ASK+A F +R+ L + Q FR
Sbjct: 66 HLDVKFLTGNEKDPVQVILEGEDVTTAIRTQECSNAASKVAAFPRVREALLRRQRAFRTA 125
Query: 974 PGLVADGRDMGTTVFPDAFLKIFLTADIKQRTKRRYKQLMQKGFSVSMSDLLINLIKRDI 1033
PGL+ADGRDMGT VFP A K++LTA ++R +RRY QL KGF V++ LL +I+RD
Sbjct: 126 PGLIADGRDMGTVVFPTASAKLYLTASAQERAQRRYNQLQDKGFDVNIERLLAEIIERDD 185
Query: 1034 RDKTRNLSPLKCPEQAHLLNTSKMNINQVVNQILD 1068
RD R ++PL E A +++TS I++V+ L+
Sbjct: 186 RDMNRPVAPLVPAENALVIDTSDKGIDEVLELALN 220
>TIGR_CMR|CPS_2334 [details] [associations]
symbol:CPS_2334 "cytidylate kinase" species:167879
"Colwellia psychrerythraea 34H" [GO:0004127 "cytidylate kinase
activity" evidence=ISS] [GO:0015949 "nucleobase-containing small
molecule interconversion" evidence=ISS] HAMAP:MF_00238
InterPro:IPR003136 InterPro:IPR011994 Pfam:PF02224 GO:GO:0005524
GO:GO:0005737 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0004127
eggNOG:COG0283 KO:K00945 OMA:HIDTGAM PANTHER:PTHR21299:SF2
TIGRFAMs:TIGR00017 HSSP:P0A6I0 RefSeq:YP_269054.1
ProteinModelPortal:Q482G4 SMR:Q482G4 STRING:Q482G4 PRIDE:Q482G4
GeneID:3523095 KEGG:cps:CPS_2334 PATRIC:21467759
HOGENOM:HOG000242849 BioCyc:CPSY167879:GI48-2399-MONOMER
Uniprot:Q482G4
Length = 226
Score = 461 (167.3 bits), Expect = 3.0e-42, P = 3.0e-42
Identities = 98/213 (46%), Positives = 146/213 (68%)
Query: 860 PVITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELELVILIK 919
PVITIDGP+ +GKGTVA++VA +LG+H LDSGA+YR++ ++ ++ + LD+E L+ +
Sbjct: 6 PVITIDGPSGAGKGTVARIVADQLGWHLLDSGAIYRVLAVAIQHHQLSLDDEEPLIPMAA 65
Query: 920 KLNYNF----LGK-EVYLNGVNVTTLIRNEKVSNNASKIAKFKNIRKELFKIQVKFRKFP 974
L+ F G+ +V L G NVT +IR E+V ASK+A F +R+ L + Q F P
Sbjct: 66 HLDVQFEINSQGEAKVILEGENVTEIIRTEEVGGLASKVAAFPRVREALLRRQRAFSVSP 125
Query: 975 GLVADGRDMGTTVFPDAFLKIFLTADIKQRTKRRYKQLMQKGFSVSMSDLLINLIKRDIR 1034
GL+ADGRDMGT VFP A +KIFLTA ++R RR+ QL +KG V++ LL ++ +RD R
Sbjct: 126 GLIADGRDMGTVVFPKAPVKIFLTASAEERADRRFNQLKEKGIDVNIGRLLDDIRQRDER 185
Query: 1035 DKTRNLSPLKCPEQAHLLNTSKMNINQVVNQIL 1067
D+ R ++PL E A ++++ ++I +VVN+IL
Sbjct: 186 DQNRKVAPLIPAEGALTIDSTDISITEVVNKIL 218
>UNIPROTKB|P0A6I0 [details] [associations]
symbol:cmk "(d)CMP kinase" species:83333 "Escherichia coli
K-12" [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0016310 "phosphorylation" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016301
"kinase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004127 "cytidylate kinase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] HAMAP:MF_00238 InterPro:IPR003136
InterPro:IPR011994 Pfam:PF02224 GO:GO:0005524 GO:GO:0005737
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0004127 eggNOG:COG0283 KO:K00945
OMA:HIDTGAM ProtClustDB:PRK00023 PANTHER:PTHR21299:SF2
TIGRFAMs:TIGR00017 HOGENOM:HOG000242849 EMBL:X00785 EMBL:X82933
EMBL:V00352 PIR:A04448 PIR:E64830 RefSeq:NP_415430.1
RefSeq:YP_489182.1 PDB:1CKE PDB:1KDO PDB:1KDP PDB:1KDR PDB:1KDT
PDB:2CMK PDB:2FEM PDB:2FEO PDBsum:1CKE PDBsum:1KDO PDBsum:1KDP
PDBsum:1KDR PDBsum:1KDT PDBsum:2CMK PDBsum:2FEM PDBsum:2FEO
ProteinModelPortal:P0A6I0 SMR:P0A6I0 IntAct:P0A6I0 PRIDE:P0A6I0
EnsemblBacteria:EBESCT00000003478 EnsemblBacteria:EBESCT00000014613
GeneID:12931015 GeneID:945535 KEGG:ecj:Y75_p0882 KEGG:eco:b0910
PATRIC:32117033 EchoBASE:EB1244 EcoGene:EG11265
BioCyc:EcoCyc:CMPKI-MONOMER BioCyc:ECOL316407:JW0893-MONOMER
BioCyc:MetaCyc:CMPKI-MONOMER BRENDA:2.7.4.14
EvolutionaryTrace:P0A6I0 Genevestigator:P0A6I0 Uniprot:P0A6I0
Length = 227
Score = 447 (162.4 bits), Expect = 1.8e-41, Sum P(2) = 1.8e-41
Identities = 94/212 (44%), Positives = 143/212 (67%)
Query: 860 PVITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELELVILIK 919
PVITIDGP+ +GKGT+ + +A L +H LDSGA+YR++ L+A+++++ + +E LV L
Sbjct: 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLAS 65
Query: 920 KLNYNFLGK----EVYLNGVNVTTLIRNEKVSNNASKIAKFKNIRKELFKIQVKFRKFPG 975
L+ F+ EV L G +V+ IR ++V+N AS++A F +R+ L + Q FR+ PG
Sbjct: 66 HLDVRFVSTNGNLEVILEGEDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPG 125
Query: 976 LVADGRDMGTTVFPDAFLKIFLTADIKQRTKRRYKQLMQKGFSVSMSDLLINLIKRDIRD 1035
L+ADGRDMGT VFPDA +KIFL A ++R RR QL +KGFSV+ LL + +RD RD
Sbjct: 126 LIADGRDMGTVVFPDAPVKIFLDASSEERAHRRMLQLQEKGFSVNFERLLAEIKERDDRD 185
Query: 1036 KTRNLSPLKCPEQAHLLNTSKMNINQVVNQIL 1067
+ R ++PL A +L+++ ++I QV+ + L
Sbjct: 186 RNRAVAPLVPAADALVLDSTTLSIEQVIEKAL 217
Score = 37 (18.1 bits), Expect = 1.8e-41, Sum P(2) = 1.8e-41
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 1229 NNVVLSHRAVIEESMGEERQKL 1250
++ LS VIE+++ RQKL
Sbjct: 203 DSTTLSIEQVIEKALQYARQKL 224
>TIGR_CMR|CHY_1925 [details] [associations]
symbol:CHY_1925 "hydroxymethylbutenyl pyrophosphate
reductase/ribosomal protein S1" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0015968 "stringent response"
evidence=ISS] [GO:0042380 "hydroxymethylbutenyl pyrophosphate
reductase activity" evidence=ISS] [GO:0046677 "response to
antibiotic" evidence=ISS] HAMAP:MF_00191 InterPro:IPR000110
InterPro:IPR003029 InterPro:IPR003451 Pfam:PF00575 Pfam:PF02401
PRINTS:PR00681 PROSITE:PS50126 UniPathway:UPA00056
UniPathway:UPA00059 GO:GO:0046872 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0016491 GO:GO:0003723
GO:GO:0005840 GO:GO:0003735 GO:GO:0051538 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
GO:GO:0019288 GO:GO:0050992 KO:K03527 TIGRFAMs:TIGR00216
eggNOG:COG0761 KO:K02945 RefSeq:YP_360744.1
ProteinModelPortal:Q3AAU0 STRING:Q3AAU0 GeneID:3726742
KEGG:chy:CHY_1925 PATRIC:21276941 HOGENOM:HOG000057927 OMA:KLIEDPW
ProtClustDB:PRK00087 BioCyc:CHYD246194:GJCN-1924-MONOMER
Uniprot:Q3AAU0
Length = 653
Score = 456 (165.6 bits), Expect = 1.2e-40, Sum P(2) = 1.2e-40
Identities = 118/362 (32%), Positives = 200/362 (55%)
Query: 1059 INQVVNQILDCFATLFKESLLR-HDMRSGEVISAEVIGLDRNFVIINADLKSEAFIPIEE 1117
I + V + ++ A++ +++LL ++ GE++ +V+ + V+++ K E IP+EE
Sbjct: 265 IIEEVRKKVEQMASM-EQALLEIKPVKEGEIVRGKVVKVLEKEVLVDIGTKGEGVIPLEE 323
Query: 1118 ---FKNDNGELEVKIGDFVSVAIESLENGFGDTILSRDKAKRLASWLSLEKAME--SGEI 1172
++ + VK GD V + E+ G ILSR KA + L+ EK +E ++
Sbjct: 324 ITWYRIERARDAVKEGDEFPVLVLK-EDEEGKIILSRKKALEI---LAEEKLLEWQKNKV 379
Query: 1173 -ITGTINGKVKGGLTVLTNGLKAFLPGSLVDIRPVKDTTPFEGKTMDFKVIKLDRKRNNV 1231
+TG I VKGG+ V G++AFLP SL+ + V+D +G+ + VI++D + V
Sbjct: 380 PVTGKIVEVVKGGVLV-DIGVRAFLPASLIALNYVEDLEALKGEEITAYVIEVDLAKRRV 438
Query: 1232 VLSHRAVIEESMGEERQKLIETLKEGCTVKGVVKNITDYGAFIDLGGIDGLLHITDIAWR 1291
VL ++ ++E + +++ I TLKEG VKG V I +GAF+DLGG +GLL DI+W+
Sbjct: 439 VLDRKSYLKEQEIKTKKEKIATLKEGSKVKGKVTKIMPFGAFVDLGGFEGLLRAQDISWQ 498
Query: 1292 RVKHPSEILTIGQDISTKILKYDQEKNRVSLGMKQLGIDPWIGLSFRYPRGTRLLGKVTN 1351
R P E L +GQ++ +L+ D+ +VSLG+KQL DPW + G L G V
Sbjct: 499 RNVRPEEHLQVGQELEVVVLEVDRHNLKVSLGLKQLTPDPWQKIPDELKEGAVLEGTVVK 558
Query: 1352 LTDYGAFVEIEKGIEGLVHISEMDWINKNVTPSKIVQLNDTVEIMILEINEERRRISLGM 1411
+ +G +E+ GIEG + E + N+ + K Q+ +E+ IL + ++++L
Sbjct: 559 ILRHGLILELFPGIEGYLPARETEAENEPLM--KKYQVGQKMEVKILTLKPLEKKMTLSQ 616
Query: 1412 KQ 1413
K+
Sbjct: 617 KE 618
Score = 262 (97.3 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
Identities = 91/362 (25%), Positives = 171/362 (47%)
Query: 1151 RDKAKRLASWLS--LE-KAMESGEIITGTINGKVKGGLTVLTNGLKA--FLPGSLVD--- 1202
R K +++AS LE K ++ GEI+ G + KV ++ G K +P +
Sbjct: 270 RKKVEQMASMEQALLEIKPVKEGEIVRGKVV-KVLEKEVLVDIGTKGEGVIPLEEITWYR 328
Query: 1203 IRPVKDTTPFEGKTMDFKVIKLDRKRNNVVLSHRAVIEESMGEERQKLIETLKEGCTVKG 1262
I +D EG V+K D + ++LS + +E + EE KL+E K V G
Sbjct: 329 IERARDAVK-EGDEFPVLVLKEDEE-GKIILSRKKALE-ILAEE--KLLEWQKNKVPVTG 383
Query: 1263 VVKNITDYGAFIDLGGIDGLLHITDIAWRRVKHPSEILTIGQDISTKILKYDQEKNRVSL 1322
+ + G +D+G + L + IA V+ E L G++I+ +++ D K RV L
Sbjct: 384 KIVEVVKGGVLVDIG-VRAFLPASLIALNYVED-LEALK-GEEITAYVIEVDLAKRRVVL 440
Query: 1323 GMKQLGIDPWIGLSFR----YPRGTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEMDWIN 1378
K + I G+++ GKVT + +GAFV++ G EGL+ ++ W
Sbjct: 441 DRKSYLKEQEIKTKKEKIATLKEGSKVKGKVTKIMPFGAFVDLG-GFEGLLRAQDISW-Q 498
Query: 1379 KNVTPSKIVQLNDTVEIMILEINEERRRISLGMKQCKDNPWENFXXXXXXXXXXXXXXXX 1438
+NV P + +Q+ +E+++LE++ ++SLG+KQ +PW+
Sbjct: 499 RNVRPEEHLQVGQELEVVVLEVDRHNLKVSLGLKQLTPDPWQKIPDELKEGAVLEGTVVK 558
Query: 1439 XTDFGIFIGLDGNIDGLIHLSDLSWTDPGEEIIRNFKKGDEIEAIILSIDVEKERISLGI 1498
G+ + L I+G + + + E +++ ++ G ++E IL++ +++++L
Sbjct: 559 ILRHGLILELFPGIEGYLPARETEAEN--EPLMKKYQVGQKMEVKILTLKPLEKKMTLSQ 616
Query: 1499 KQ 1500
K+
Sbjct: 617 KE 618
Score = 257 (95.5 bits), Expect = 9.9e-18, Sum P(2) = 9.9e-18
Identities = 90/388 (23%), Positives = 167/388 (43%)
Query: 1241 ESMGEERQKLIET--LKEGCTVKGVVKNITDYGAFIDLGGI-DGLLHITDIAWRRVKHPS 1297
E M Q L+E +KEG V+G V + + +D+G +G++ + +I W R++
Sbjct: 274 EQMASMEQALLEIKPVKEGEIVRGKVVKVLEKEVLVDIGTKGEGVIPLEEITWYRIERAR 333
Query: 1298 EILTIGQDISTKILKYDQEKNRVSLGMKQLGIDPWIGLSFRYPRGTRLLGKVTNLTDYGA 1357
+ + G + +LK D+E + K L I L + GK+ + G
Sbjct: 334 DAVKEGDEFPVLVLKEDEEGKIILSRKKALEILAEEKLLEWQKNKVPVTGKIVEVVKGGV 393
Query: 1358 FVEIEKGIEGLVHISEMDWINKNVTPSKIVQLNDTVEIMILEINEERRRISLGMKQ-CKD 1416
V+I G+ + S I N + + ++E++ +RR+ L K K+
Sbjct: 394 LVDI--GVRAFLPAS---LIALNYVEDLEALKGEEITAYVIEVDLAKRRVVLDRKSYLKE 448
Query: 1417 NPWENFXXXXXXXXXXXXXXXXXTD---FGIFIGLDGNIDGLIHLSDLSWTDPGEEIIRN 1473
+ T FG F+ L G +GL+ D+SW +
Sbjct: 449 QEIKTKKEKIATLKEGSKVKGKVTKIMPFGAFVDL-GGFEGLLRAQDISW-QRNVRPEEH 506
Query: 1474 FKKGDEIEAIILSIDVEKERISLGIKQLEGDPFNNYVNINDKGSLVNGIIKSIDTNKGAI 1533
+ G E+E ++L +D ++SLG+KQL DP+ + +G+++ G + I G I
Sbjct: 507 LQVGQELEVVVLEVDRHNLKVSLGLKQLTPDPWQKIPDELKEGAVLEGTVVKI-LRHGLI 565
Query: 1534 IQLSNEVEGYLRISEEDNKHE---KKLKIGENIDVLTVLIDHKTRYIQLSFXXXXXXXXX 1590
++L +EGYL E + ++E KK ++G+ ++V + + + + LS
Sbjct: 566 LELFPGIEGYLPARETEAENEPLMKKYQVGQKMEVKILTLKPLEKKMTLSQKEALREKEK 625
Query: 1591 XLLTSINANTISGTTNLGLILKAELEKI 1618
A + T +LG IL+ +L+ +
Sbjct: 626 EQYQKELAEEENLTFSLGEILRGKLKDV 653
Score = 49 (22.3 bits), Expect = 1.2e-40, Sum P(2) = 1.2e-40
Identities = 10/44 (22%), Positives = 22/44 (50%)
Query: 816 RTRVSEIRKMGRSTQGVILITVENKSKLCGVQRLCKITMIKKYI 859
RTR E RK+ + ++++ +N + + ++C T Y+
Sbjct: 192 RTRQEESRKLATEVEVMLVVGGKNSANTKKLAQICAATNTPTYL 235
Score = 46 (21.3 bits), Expect = 5.8e-18, Sum P(2) = 5.8e-18
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 1107 LKSEAFIPIEEFKNDNGE 1124
LK IPIEE + NG+
Sbjct: 48 LKKAGIIPIEEIEEGNGK 65
Score = 40 (19.1 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 1135 VAIESLENGFGDTILSR 1151
+ IE +E G G TI+ R
Sbjct: 54 IPIEEIEEGNGKTIIIR 70
>UNIPROTKB|Q3KL34 [details] [associations]
symbol:gyrA_2 "DNA gyrase subunit A" species:315277
"Chlamydia trachomatis A/HAR-13" [GO:0003918 "DNA topoisomerase
type II (ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR002205 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 SMART:SM00434 GO:GO:0005524 GO:GO:0005694
GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0009295 EMBL:CP000051 GenomeReviews:CP000051_GR GO:GO:0006265
eggNOG:COG0188 KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 RefSeq:YP_328486.1 ProteinModelPortal:Q3KL34
STRING:Q3KL34 GeneID:3687724 KEGG:cta:CTA_0717 PATRIC:32023358
HOGENOM:HOG000028598 OMA:ERAIPHI ProtClustDB:PRK09630
BioCyc:CTRA315277:GI4C-738-MONOMER Uniprot:Q3KL34
Length = 490
Score = 369 (135.0 bits), Expect = 8.4e-40, Sum P(2) = 8.4e-40
Identities = 90/229 (39%), Positives = 131/229 (57%)
Query: 21 YLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGETMGKYHPH 80
+ YA VI+ RA+P V DGLKPV RR+L+ + M++ K A + G TM HPH
Sbjct: 12 FTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRMDD---GKMHKVANIAGRTMA-LHPH 67
Query: 81 GDVSIYDALVRMAQSFSLRCTLVDGQGNFGS-IDGDSAAAMRYTECRLNKISNELLIDLD 139
GD I +ALV +A + L++ QGNFG+ + GD AA RY E RL+ ++ E+L + D
Sbjct: 68 GDAPIVEALVVLAN----KGFLIETQGNFGNPLTGDPHAAARYIEARLSPLAKEVLFNTD 123
Query: 140 KETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGVLYVLH 199
T F +YDG+E+EP +L +IP LL++G GIAVGM T I PHN ++++ + +L+
Sbjct: 124 LMT--FHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDLLEAQIAILN 181
Query: 200 NPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRAKTHI 248
+ S+ PDFP G + D Y G G +++RA I
Sbjct: 182 DQPFSL--------LPDFPPGGTM----DASD-YQDGLGSIVLRATIDI 217
Score = 100 (40.3 bits), Expect = 8.4e-40, Sum P(2) = 8.4e-40
Identities = 53/204 (25%), Positives = 88/204 (43%)
Query: 215 PDFPTAGIIYGLSSVHDGYYTGKGRVIIRAKTHIEEFNRENRTAIIIDELPYQVNKKSLL 274
PDFP G + D Y G G +++RA I+ N ++T ++I E+ ++L+
Sbjct: 189 PDFPPGGTM----DASD-YQDGLGSIVLRAT--IDIIN--DKT-LLIKEICPSTTTETLI 238
Query: 275 EKISQLVKEKKLECISNLRDESDKSGMRIVIELKRNEIPEIVLNKLYKQTQLQNTFGMNM 334
I K ++ I +++D S I I+L + + +L LY T+ Q
Sbjct: 239 RSIENAAKRGIIK-IDSIQDFSTDLP-HIEIKLPKGIYAKDLLRPLYTHTECQVILTSRP 296
Query: 335 LALVNGQPKLLNLKEILYYFILHRKEVIKRRT-IFELRKAREYAH-ILEGLTIALTNIDN 392
A+ G+P + EIL + +K+ I E +RE H LE L I D
Sbjct: 297 TAIYQGKPWETTISEILRLQTKTLQNYLKKELLILEDSLSRELYHKTLEYLFIKHKLYDT 356
Query: 393 FIQII--RSTSTPQEA-KNKIIES 413
++ R TS A N ++E+
Sbjct: 357 VRSMLSKRKTSPSSSAIHNAVLEA 380
Score = 43 (20.2 bits), Expect = 8.0e-34, Sum P(2) = 8.0e-34
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 666 KTLLSNFSNPRKSGIIAVNLSNEDF 690
+TL+ + N K GII ++ S +DF
Sbjct: 235 ETLIRSIENAAKRGIIKID-SIQDF 258
>UNIPROTKB|Q9KQT2 [details] [associations]
symbol:cmk "Cytidylate kinase" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0004127 "cytidylate
kinase activity" evidence=ISS] [GO:0015949 "nucleobase-containing
small molecule interconversion" evidence=ISS] HAMAP:MF_00238
InterPro:IPR003136 GO:GO:0005524 GO:GO:0005737 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0015949 GO:GO:0004127
eggNOG:COG0283 KO:K00945 OMA:HIDTGAM ProtClustDB:PRK00023
PANTHER:PTHR21299:SF2 TIGRFAMs:TIGR00017 PIR:C82141
RefSeq:NP_231550.1 ProteinModelPortal:Q9KQT2 SMR:Q9KQT2
DNASU:2613545 GeneID:2613545 KEGG:vch:VC1916 PATRIC:20082876
Uniprot:Q9KQT2
Length = 225
Score = 436 (158.5 bits), Expect = 1.4e-39, P = 1.4e-39
Identities = 92/217 (42%), Positives = 139/217 (64%)
Query: 855 IKKYIPVITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELEL 914
+ + PV+T+DGP+ +GKGT+ L+A KLGF LDSGA+YR++ L+A+++ + L++E L
Sbjct: 1 MSSHTPVVTVDGPSGAGKGTLCMLLAKKLGFQLLDSGAIYRVLALAALHHGVDLESEDAL 60
Query: 915 VILIKKLNYNFLGK----EVYLNGVNVTTLIRNEKVSNNASKIAKFKNIRKELFKIQVKF 970
V L L+ F+ + +V L G +V+ +R E+ ASK+A +R+ L + Q F
Sbjct: 61 VPLATHLDVQFIAEGDLVKVILEGEDVSRELRKEETGMAASKVAALPRVREALLRRQRAF 120
Query: 971 RKFPGLVADGRDMGTTVFPDAFLKIFLTADIKQRTKRRYKQLMQKGFSVSMSDLLINLIK 1030
GLVADGRDMGT VFP A KIFL A ++R +RR+KQL KG V LL + +
Sbjct: 121 ASGIGLVADGRDMGTVVFPAAEAKIFLDASAEERARRRFKQLQLKGLDVKFDALLSEIQE 180
Query: 1031 RDIRDKTRNLSPLKCPEQAHLLNTSKMNINQVVNQIL 1067
RD RD+ R ++PL+ E A +L+++ + I++VV Q L
Sbjct: 181 RDDRDRNRAVAPLRPAEDALVLDSTTLTIDEVVEQAL 217
>TIGR_CMR|VC_1916 [details] [associations]
symbol:VC_1916 "cytidylate kinase" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0004127 "cytidylate kinase activity"
evidence=ISS] [GO:0015949 "nucleobase-containing small molecule
interconversion" evidence=ISS] HAMAP:MF_00238 InterPro:IPR003136
GO:GO:0005524 GO:GO:0005737 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0015949 GO:GO:0004127 eggNOG:COG0283 KO:K00945 OMA:HIDTGAM
ProtClustDB:PRK00023 PANTHER:PTHR21299:SF2 TIGRFAMs:TIGR00017
PIR:C82141 RefSeq:NP_231550.1 ProteinModelPortal:Q9KQT2 SMR:Q9KQT2
DNASU:2613545 GeneID:2613545 KEGG:vch:VC1916 PATRIC:20082876
Uniprot:Q9KQT2
Length = 225
Score = 436 (158.5 bits), Expect = 1.4e-39, P = 1.4e-39
Identities = 92/217 (42%), Positives = 139/217 (64%)
Query: 855 IKKYIPVITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELEL 914
+ + PV+T+DGP+ +GKGT+ L+A KLGF LDSGA+YR++ L+A+++ + L++E L
Sbjct: 1 MSSHTPVVTVDGPSGAGKGTLCMLLAKKLGFQLLDSGAIYRVLALAALHHGVDLESEDAL 60
Query: 915 VILIKKLNYNFLGK----EVYLNGVNVTTLIRNEKVSNNASKIAKFKNIRKELFKIQVKF 970
V L L+ F+ + +V L G +V+ +R E+ ASK+A +R+ L + Q F
Sbjct: 61 VPLATHLDVQFIAEGDLVKVILEGEDVSRELRKEETGMAASKVAALPRVREALLRRQRAF 120
Query: 971 RKFPGLVADGRDMGTTVFPDAFLKIFLTADIKQRTKRRYKQLMQKGFSVSMSDLLINLIK 1030
GLVADGRDMGT VFP A KIFL A ++R +RR+KQL KG V LL + +
Sbjct: 121 ASGIGLVADGRDMGTVVFPAAEAKIFLDASAEERARRRFKQLQLKGLDVKFDALLSEIQE 180
Query: 1031 RDIRDKTRNLSPLKCPEQAHLLNTSKMNINQVVNQIL 1067
RD RD+ R ++PL+ E A +L+++ + I++VV Q L
Sbjct: 181 RDDRDRNRAVAPLRPAEDALVLDSTTLTIDEVVEQAL 217
>TIGR_CMR|CHY_1927 [details] [associations]
symbol:CHY_1927 "cytidylate kinase" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0004127 "cytidylate
kinase activity" evidence=ISS] [GO:0015949 "nucleobase-containing
small molecule interconversion" evidence=ISS] HAMAP:MF_00238
InterPro:IPR003136 InterPro:IPR011994 Pfam:PF02224
InterPro:IPR000623 Pfam:PF01202 GO:GO:0005524 GO:GO:0005737
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0004765 GO:GO:0004127
eggNOG:COG0283 HOGENOM:HOG000242850 KO:K00945 OMA:HIDTGAM
PANTHER:PTHR21299:SF2 TIGRFAMs:TIGR00017 RefSeq:YP_360746.1
HSSP:P0A6I0 ProteinModelPortal:Q3AAT8 STRING:Q3AAT8 PRIDE:Q3AAT8
GeneID:3726600 KEGG:chy:CHY_1927 PATRIC:21276945
BioCyc:CHYD246194:GJCN-1926-MONOMER Uniprot:Q3AAT8
Length = 222
Score = 423 (154.0 bits), Expect = 3.3e-38, P = 3.3e-38
Identities = 87/211 (41%), Positives = 140/211 (66%)
Query: 862 ITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELELVILIKKL 921
I IDGP +GK TVA+++A KL F YLD+GA+YR VT+ + NN+ L++E + L++K
Sbjct: 3 IAIDGPAGAGKSTVARILAKKLSFTYLDTGAMYRAVTVLFLENNLSLEDENGIKRLLEKT 62
Query: 922 NYNFL----GKEVYLNGVNVTTLIRNEKVSNNASKIAKFKNIRKELFKIQVKFRKFPGLV 977
+ + G+++ LN +VT LIR +VS +K++ +RK L ++Q K +V
Sbjct: 63 DIKIIPGDEGQKILLNERDVTELIRTPQVSELVAKVSALPEVRKYLTELQRKIIAKGNVV 122
Query: 978 ADGRDMGTTVFPDAFLKIFLTADIKQRTKRRYKQLMQKGFSVSMSDLLINLIKRDIRDKT 1037
ADGRD+GT V P+A +KIFLTA ++R +RR+++L+ KG+ VS ++ ++KRD D T
Sbjct: 123 ADGRDIGTVVMPEAEVKIFLTASAEERARRRHRELLAKGYEVSYEEVFREVLKRDELDTT 182
Query: 1038 RNLSPLKCPEQAHLLNTSKMNINQVVNQILD 1068
R +SPL+ E A L++T+ + I +VV ++L+
Sbjct: 183 REISPLRKAEDAILVDTTGLKIEEVVAKLLE 213
>TIGR_CMR|BA_1518 [details] [associations]
symbol:BA_1518 "cytidylate kinase" species:198094 "Bacillus
anthracis str. Ames" [GO:0004127 "cytidylate kinase activity"
evidence=ISS] [GO:0015949 "nucleobase-containing small molecule
interconversion" evidence=ISS] HAMAP:MF_00238 InterPro:IPR003136
InterPro:IPR011994 Pfam:PF02224 GO:GO:0005524 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0004127
RefSeq:NP_843969.1 RefSeq:YP_018141.1 RefSeq:YP_027676.1
ProteinModelPortal:Q81SX6 SMR:Q81SX6 IntAct:Q81SX6 DNASU:1087314
EnsemblBacteria:EBBACT00000009911 EnsemblBacteria:EBBACT00000018166
EnsemblBacteria:EBBACT00000019614 GeneID:1087314 GeneID:2817204
GeneID:2849932 KEGG:ban:BA_1518 KEGG:bar:GBAA_1518 KEGG:bat:BAS1407
eggNOG:COG0283 HOGENOM:HOG000242850 KO:K00945 OMA:HIDTGAM
ProtClustDB:PRK00023 BioCyc:BANT260799:GJAJ-1481-MONOMER
BioCyc:BANT261594:GJ7F-1543-MONOMER PANTHER:PTHR21299:SF2
TIGRFAMs:TIGR00017 Uniprot:Q81SX6
Length = 225
Score = 413 (150.4 bits), Expect = 3.9e-37, P = 3.9e-37
Identities = 84/217 (38%), Positives = 140/217 (64%)
Query: 862 ITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELELVILIKKL 921
I IDGP A+GK TVA++VA KL + Y+D+GA+YR +T +A+ + ++NE +L+ ++K +
Sbjct: 7 IAIDGPAAAGKSTVAKVVAKKLSYVYIDTGAMYRTITYAALEQKVDIENEEQLMEVVKNV 66
Query: 922 NYNFLGKE----VYLNGVNVTTLIRNEKVSNNASKIAKFKNIRKELFKIQVKFRKFPGLV 977
F E V+LNG +V+ +IR +V+N S +AK + +R+E+ + Q + + G+V
Sbjct: 67 KIEFQQGENTQLVFLNGQDVSEVIRTPEVTNRVSIVAKHRLVREEMVRRQQELAEKGGVV 126
Query: 978 ADGRDMGTTVFPDAFLKIFLTADIKQRTKRRYKQLMQKGFSVSMSDLLINLIKRDIRDKT 1037
DGRD+GT V PDA +KIF+ A +++R +RR+ + M KGF ++ L + +RD D
Sbjct: 127 MDGRDIGTHVLPDAEVKIFMLASVEERAERRHLENMNKGFDSNLEQLKEEIAQRDKLDSE 186
Query: 1038 RNLSPLKCPEQAHLLNTSKMNINQVVNQILDCFATLF 1074
R +SPLK + A L+T+ ++I +VV +I+ +F
Sbjct: 187 REVSPLKKADDALELDTTSLSIEEVVQKIMGIVLGVF 223
>TIGR_CMR|CBU_0527 [details] [associations]
symbol:CBU_0527 "cytidylate kinase" species:227377
"Coxiella burnetii RSA 493" [GO:0004127 "cytidylate kinase
activity" evidence=ISS] [GO:0015949 "nucleobase-containing small
molecule interconversion" evidence=ISS] HAMAP:MF_00238
InterPro:IPR003136 InterPro:IPR011994 Pfam:PF02224 GO:GO:0005524
GO:GO:0005737 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0004127
eggNOG:COG0283 KO:K00945 OMA:HIDTGAM ProtClustDB:PRK00023
PANTHER:PTHR21299:SF2 TIGRFAMs:TIGR00017 HOGENOM:HOG000242849
RefSeq:NP_819559.1 ProteinModelPortal:Q83E10 GeneID:1208412
KEGG:cbu:CBU_0527 PATRIC:17929755
BioCyc:CBUR227377:GJ7S-530-MONOMER Uniprot:Q83E10
Length = 237
Score = 411 (149.7 bits), Expect = 6.3e-37, P = 6.3e-37
Identities = 88/219 (40%), Positives = 139/219 (63%)
Query: 856 KKYIPVITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELELV 915
+K PVITIDGP+ SGKGT+A +A L ++ LDSG +YR + + + + L++ L
Sbjct: 5 QKPAPVITIDGPSGSGKGTIAFRIAQTLNWYLLDSGIIYRAIAWAMAHYKVPLEDSAGLA 64
Query: 916 ILIKKLNYNF----LGKEVYLN--GVNVTTLIRNEKVSNNASKIAKFKNIRKELFKIQVK 969
L+K++ + LGK+ ++ G ++T IR+E+ AS+ + +R+ + + Q
Sbjct: 65 RLLKRVQISIENRILGKKAKISCDGHDITLAIRSEECGALASRASALPIVREAVLQYQRD 124
Query: 970 FRKFPGLVADGRDMGTTVFPDAFLKIFLTADIKQRTKRRYKQLMQKGFSVSMSDLLINLI 1029
FR+ PGLVADGRDMGT VFPDA LK + AD +QR RRYK+L +G +VS+ D+ +L
Sbjct: 125 FRQRPGLVADGRDMGTVVFPDAVLKFYFDADSQQRAYRRYKELQDRGINVSLPDIQEDLE 184
Query: 1030 KRDIRDKTRNLSPLKCPEQAHLLNTSKMNINQVVNQILD 1068
+RD RD TR++SP K E A +++T+ ++I V +++
Sbjct: 185 ERDRRDITRSISPTKPAEDAVIIDTTHLSIEAVFATVMN 223
>UNIPROTKB|Q8A1S9 [details] [associations]
symbol:BT_3579 "Topoisomerase IV subunit A" species:226186
"Bacteroides thetaiotaomicron VPI-5482" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] InterPro:IPR002205 InterPro:IPR013758
InterPro:IPR013760 Pfam:PF00521 SMART:SM00434 GO:GO:0005524
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 Gene3D:3.30.1360.40
InterPro:IPR024946 EMBL:AE015928 GenomeReviews:AE015928_GR
GO:GO:0009295 GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 KO:K02621 HSSP:P09097 HOGENOM:HOG000028598
RefSeq:NP_812491.1 ProteinModelPortal:Q8A1S9 GeneID:1072261
KEGG:bth:BT_3579 PATRIC:21062161 OMA:DTQGNWG ProtClustDB:PRK12758
BioCyc:BTHE226186:GJXV-3646-MONOMER Uniprot:Q8A1S9
Length = 850
Score = 424 (154.3 bits), Expect = 4.9e-36, Sum P(4) = 4.9e-36
Identities = 106/268 (39%), Positives = 157/268 (58%)
Query: 21 YLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGETMGKYHPH 80
+LDYA VI+ RA+P + DGLKPV RR+L H M L + + K A +VG TM ++HPH
Sbjct: 6 FLDYASYVILERAVPHINDGLKPVQRRIL---HSMKRLDDGRYNKVANIVGHTM-QFHPH 61
Query: 81 GDVSIYDALVRMAQSFSLRCTLVDGQGNFGSI-DGDSAAAMRYTECRLNKISNELLIDLD 139
GD SI DALV++ Q + L+D QGN+G+I GD AAA RY E RL+K + +++ +
Sbjct: 62 GDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYIEARLSKFALDIVFN-- 115
Query: 140 KETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGVLYVLH 199
+T ++ +YDG+ KEP LP + P LL G GIAVG+++ I PHN E+ D + LH
Sbjct: 116 PKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASISYLH 175
Query: 200 NPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRAKTHIEEFNRENRTAI 259
+ PDF T G I ++ +DG G G V +RAK + +N+T +
Sbjct: 176 GESFQLY--------PDFQTGGSI-DVAKYNDGE-RG-GAVKVRAKIN----KLDNKT-L 219
Query: 260 IIDELPYQVNKKSLLEKISQLVKEKKLE 287
I E+PY ++++ I + V + K++
Sbjct: 220 AITEIPYGKTTSTVIDSILKAVDKGKIK 247
Score = 51 (23.0 bits), Expect = 4.9e-36, Sum P(4) = 4.9e-36
Identities = 16/66 (24%), Positives = 32/66 (48%)
Query: 1084 RSGEVISAEVIGLDRNFVIINADLKSEAFIPIEEFKNDNGELEV-KIGDFVSVAIESLEN 1142
+ G + + DR+ + +N D + E + EF++D+ L V G+F + + L N
Sbjct: 638 KGGSTLGGRKVWFDRDILRLNYDGRGEY---LGEFQSDDTILVVLNNGEFYTTNFD-LSN 693
Query: 1143 GFGDTI 1148
+ D +
Sbjct: 694 HYEDNV 699
Score = 50 (22.7 bits), Expect = 4.9e-36, Sum P(4) = 4.9e-36
Identities = 40/201 (19%), Positives = 73/201 (36%)
Query: 648 DFPKNNYVFMSTSLG--IVKKTLLSNFSNPRKSGIIAVN----LSNEDFLIGAALTDGSY 701
D+ N Y + + G ++T L NF + ++ N ++ ++ IG AL +
Sbjct: 430 DYTVNWYQMLKSKYGKNFPRRTELRNFDTIEAAKVVEANEKLYINRDEGFIGTALKKDEF 489
Query: 702 DIMLFSDSGKAVRFNENSVRAMGRSARGVIGMRLEKKQKVIALLVSNNQKQSVLTAT-EN 760
+ SD + F + + V + K + + N K+++ T +
Sbjct: 490 -VANCSDIDDVIVFFRDGKYIV----TPVADKKFVGKNILYVNVFKKNDKRTIYNITYRD 544
Query: 761 GYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATL-VNRYHEIMLIT------TGGI 813
G T IK + + + ++ + N EI+ +T I
Sbjct: 545 GKEGTTYIKRFAVTGVVRDREYDVTQGTPDSRITYFSANPNGEAEIIKVTLKPNPRVRRI 604
Query: 814 LIRTRVSEIRKMGRSTQGVIL 834
+ SEI GR QGVIL
Sbjct: 605 IFERDFSEISIKGRQAQGVIL 625
Score = 44 (20.5 bits), Expect = 4.9e-36, Sum P(4) = 4.9e-36
Identities = 12/53 (22%), Positives = 26/53 (49%)
Query: 440 ISKLQNNDMYKLSDIQAQEILKMPLQRLTNM--EQKKIINKYENVIKKVIDLT 490
I ++ D+ KL +I+ ILK + + K+ I + ++ + ++D T
Sbjct: 380 IREVTKEDILKLMEIKMGRILKFNTDKADELIARMKEEIAEIDDHLAHIVDYT 432
Score = 41 (19.5 bits), Expect = 4.1e-35, Sum P(4) = 4.1e-35
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 715 FNENSVRAMGRSARGVIGMRL 735
F+E S++ GR A+GVI RL
Sbjct: 610 FSEISIK--GRQAQGVILTRL 628
>TIGR_CMR|GSU_2605 [details] [associations]
symbol:GSU_2605 "cytidylate kinase" species:243231
"Geobacter sulfurreducens PCA" [GO:0004127 "cytidylate kinase
activity" evidence=ISS] [GO:0015949 "nucleobase-containing small
molecule interconversion" evidence=ISS] HAMAP:MF_00238
InterPro:IPR000850 InterPro:IPR003136 InterPro:IPR011994
Pfam:PF00406 Pfam:PF02224 GO:GO:0005524 GO:GO:0005737 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0004127 eggNOG:COG0283
HOGENOM:HOG000242850 KO:K00945 OMA:HIDTGAM PANTHER:PTHR21299:SF2
TIGRFAMs:TIGR00017 RefSeq:NP_953650.1 ProteinModelPortal:Q749Y7
GeneID:2686307 KEGG:gsu:GSU2605 PATRIC:22028063
ProtClustDB:CLSK828901 BioCyc:GSUL243231:GH27-2593-MONOMER
Uniprot:Q749Y7
Length = 233
Score = 339 (124.4 bits), Expect = 3.0e-29, P = 3.0e-29
Identities = 72/210 (34%), Positives = 127/210 (60%)
Query: 861 VITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELELVILIKK 920
++ IDGP+ +GK T+ +L+A +LG+ ++D+GA++R V L+A I DN+ L L
Sbjct: 10 IVAIDGPSGAGKSTITKLLADRLGYIHIDTGAMFRTVALAASRAGIAPDNDASLAGLCAD 69
Query: 921 LNYNFLGKE----VYLNGVNVTTLIRNEKVSNNASKIAKFKNIRKELFKIQVKFRKFPGL 976
L F+ V NG +VT IR +S S I+ K +R L ++Q + G+
Sbjct: 70 LEIAFVRNNGCCRVTANGEDVTDAIRTPAISALTSAISARKVVRDVLLRLQRHMAREGGV 129
Query: 977 VADGRDMGTTVFPDAFLKIFLTADIKQRTKRRYKQLMQKGFSVSMSDLLINLIKRDIRDK 1036
+ +GRD+GT VFPDA +K FL+A +++R +RRY +L KG VS+ + + + +RD +D
Sbjct: 130 ILEGRDIGTVVFPDADVKFFLSASVEERGRRRYLELKAKGQEVSLDETIAAVARRDEQDS 189
Query: 1037 TRNLSPLKCPEQAHLLNTSKMNINQVVNQI 1066
R +PL+ + A ++++ ++I +V++++
Sbjct: 190 GREHAPLRRADDAVDIDSTGLSIEEVLDRM 219
>TIGR_CMR|ECH_0403 [details] [associations]
symbol:ECH_0403 "cytidylate kinase" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0004127 "cytidylate
kinase activity" evidence=ISS] [GO:0015949 "nucleobase-containing
small molecule interconversion" evidence=ISS] HAMAP:MF_00238
InterPro:IPR003136 InterPro:IPR011994 Pfam:PF02224 GO:GO:0005524
GO:GO:0005737 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0004127
GO:GO:0006220 eggNOG:COG0283 KO:K00945 PANTHER:PTHR21299:SF2
TIGRFAMs:TIGR00017 HOGENOM:HOG000242849 RefSeq:YP_507223.1
ProteinModelPortal:Q2GH60 STRING:Q2GH60 GeneID:3927990
KEGG:ech:ECH_0403 PATRIC:20576283 OMA:FFITANT
ProtClustDB:CLSK749381 BioCyc:ECHA205920:GJNR-404-MONOMER
Uniprot:Q2GH60
Length = 213
Score = 334 (122.6 bits), Expect = 1.0e-28, P = 1.0e-28
Identities = 85/217 (39%), Positives = 128/217 (58%)
Query: 861 VITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLV-TL--SAINNNIQLDNELELVIL 917
VITIDGP+ASGKG++A+ +A+ L F YLD+G LYR++ T+ ++ N++++DN+LE IL
Sbjct: 9 VITIDGPSASGKGSLAKKLANFLNFQYLDTGKLYRIIATIFGTSAQNHLKIDNKLEDKIL 68
Query: 918 IKKLNYNFLGKEVYLNGVNVTTLIRNEKVSNNASKIAKFKNIRKELFKIQVKFRKF--PG 975
L N T+ NE + AS +A++++IR L IQ K PG
Sbjct: 69 SLLLEDN-------------NTIYNNEDIGKTASILARYQHIRLALLPIQRKLIHLAEPG 115
Query: 976 LVADGRDMGTTVFPDAFLKIFLTADIKQRTKRRYKQLMQKGFSVSMSDLLINLIKRDIRD 1035
++ DGRD +TVFP+A LKIF+TA R +RR+K+++ + + +++RDIRD
Sbjct: 116 IILDGRDTSSTVFPEADLKIFITAQASIRAQRRFKEMLYHKKEM-YKKIHKQILERDIRD 174
Query: 1036 KTRNLSPLKCPEQAHLLNTSKMNINQVVNQILDCFAT 1072
R SPL + A +NTS MN QV+ I + T
Sbjct: 175 TYRKFSPLVKVKDALYINTSYMNKEQVLLYIKEKIKT 211
>UNIPROTKB|P63803 [details] [associations]
symbol:cmk "Cytidylate kinase" species:1773 "Mycobacterium
tuberculosis" [GO:0004127 "cytidylate kinase activity"
evidence=IDA] [GO:0040007 "growth" evidence=IMP] HAMAP:MF_00238
InterPro:IPR003136 InterPro:IPR011994 Pfam:PF02224 GO:GO:0005524
GO:GO:0005737 GO:GO:0040007 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842577 GO:GO:0004127
eggNOG:COG0283 HOGENOM:HOG000242850 KO:K00945 OMA:HIDTGAM
ProtClustDB:PRK00023 PANTHER:PTHR21299:SF2 TIGRFAMs:TIGR00017
PIR:G70504 RefSeq:NP_216228.1 RefSeq:NP_336209.1
RefSeq:YP_006515107.1 ProteinModelPortal:P63803 SMR:P63803
PRIDE:P63803 EnsemblBacteria:EBMYCT00000003003
EnsemblBacteria:EBMYCT00000069081 GeneID:13316497 GeneID:885157
GeneID:923952 KEGG:mtc:MT1752 KEGG:mtu:Rv1712 KEGG:mtv:RVBD_1712
PATRIC:18125606 TubercuList:Rv1712 Uniprot:P63803
Length = 230
Score = 320 (117.7 bits), Expect = 3.1e-27, P = 3.1e-27
Identities = 75/213 (35%), Positives = 123/213 (57%)
Query: 861 VITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDN--ELELVI-- 916
V+ IDGP +GK +V++ +A +LG +LD+GA+YR+VTL+ + + +E +
Sbjct: 8 VVAIDGPAGTGKSSVSRRLARELGARFLDTGAMYRIVTLAVLRAGADPSDIAAVETIAST 67
Query: 917 LIKKLNYNFLGKEVYLNGVNVTTLIRNEKVSNNASKIAKFKNIRKELFKIQVKFRKFPG- 975
+ L Y+ G YL G +V+ IR + V+ S ++ +R L ++Q + PG
Sbjct: 68 VQMSLGYDPDGDSCYLAGEDVSVEIRGDAVTRAVSAVSSVPAVRTRLVELQRTMAEGPGS 127
Query: 976 LVADGRDMGTTVFPDAFLKIFLTADIKQRTKRRYKQLMQKGFSVSMSDLLINLIKRDIRD 1035
+V +GRD+GT VFPDA +KIFLTA + R +RR Q + G + +L ++ +RD D
Sbjct: 128 IVVEGRDIGTVVFPDAPVKIFLTASAETRARRRNAQNVAAGLADDYDGVLADVRRRDHLD 187
Query: 1036 KTRNLSPLKCPEQAHLLNTSKMNINQVVNQILD 1068
TR +SPL+ A +++TS M +VV +L+
Sbjct: 188 STRAVSPLQAAGDAVIVDTSDMTEAEVVAHLLE 220
>UNIPROTKB|Q8EYM0 [details] [associations]
symbol:gyrA "DNA gyrase subunit A" species:189518
"Leptospira interrogans serovar Lai str. 56601" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] InterPro:IPR002205 InterPro:IPR013758
InterPro:IPR013760 Pfam:PF00521 SMART:SM00434 GO:GO:0005524
GO:GO:0005694 GO:GO:0007059 GO:GO:0006261 GO:GO:0009295
GO:GO:0006265 KO:K02469 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 EMBL:AE010300 GenomeReviews:AE010300_GR HSSP:P09097
RefSeq:NP_714373.1 ProteinModelPortal:Q8EYM0 GeneID:1153535
KEGG:lil:LA_4193 PATRIC:22389225 HOGENOM:HOG000040410 OMA:TINVITH
ProtClustDB:CLSK575165 BioCyc:LINT189518:GJBB-3319-MONOMER
Uniprot:Q8EYM0
Length = 462
Score = 308 (113.5 bits), Expect = 9.4e-25, Sum P(2) = 9.4e-25
Identities = 72/181 (39%), Positives = 101/181 (55%)
Query: 14 EEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGET 73
E+++ Y+ V RA+P DGLKPV RR+L+AM ++ NR + K +V G
Sbjct: 19 EDQVNDDQRKYSRYVCDSRAIPHEIDGLKPVQRRILWAMWN-SDARNR-YTKTVKVAGLA 76
Query: 74 MGKYHPHGDVSIYDALVRMAQSFSL--RCTLVDGQGNFGSI-DGDSAAAMRYTECRLNKI 130
MG YHPHGD SI DAL +MAQ F+ LV G+G FG + D + A+ RYTE +L+
Sbjct: 77 MG-YHPHGDKSIQDALSQMAQDFTFANNIPLVSGEGTFGDVLDPSAIASPRYTEVKLSDF 135
Query: 131 SNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEV 190
+L ID++ NYD E EP ++P +L+N GIA G IP H L ++
Sbjct: 136 VKDLGFFESLPDIDYVKNYDETEDEPIHFVGKVPIVLLNNIQGIATGFRCFIPGHRLADI 195
Query: 191 I 191
+
Sbjct: 196 V 196
Score = 49 (22.3 bits), Expect = 9.4e-25, Sum P(2) = 9.4e-25
Identities = 20/89 (22%), Positives = 43/89 (48%)
Query: 409 KIIESTWNLPDVSKIIGF-NKKNYNT---ISKINNISKLQNNDMYKLSDIQAQEILKMPL 464
+ I+ WN K+IG +KK++ SK L +Y+++ +E+ K
Sbjct: 370 RFIKEKWN----EKVIGIKSKKDFEEKLKTSKFKYFEWLSTIPVYRMT---IEEVKKCE- 421
Query: 465 QRLTNMEQKKIINKYENVIKKVIDLTDIL 493
+ + +E K + +Y+ ++K+ LT+ +
Sbjct: 422 EAI--VEAKTTLARYQGLVKEDKKLTEFM 448
>TIGR_CMR|APH_0274 [details] [associations]
symbol:APH_0274 "cytidylate monophosphate kinase"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0004127
"cytidylate kinase activity" evidence=ISS] [GO:0015949
"nucleobase-containing small molecule interconversion"
evidence=ISS] HAMAP:MF_00238 InterPro:IPR003136 InterPro:IPR011994
Pfam:PF02224 GO:GO:0005524 GO:GO:0005737 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0004127 GO:GO:0006220
eggNOG:COG0283 KO:K00945 PANTHER:PTHR21299:SF2 TIGRFAMs:TIGR00017
HOGENOM:HOG000242849 OMA:FFITANT ProtClustDB:CLSK749381
RefSeq:YP_504888.1 ProteinModelPortal:Q2GL63 STRING:Q2GL63
GeneID:3930125 KEGG:aph:APH_0274 PATRIC:20949122
BioCyc:APHA212042:GHPM-306-MONOMER Uniprot:Q2GL63
Length = 228
Score = 283 (104.7 bits), Expect = 2.7e-23, P = 2.7e-23
Identities = 77/211 (36%), Positives = 117/211 (55%)
Query: 861 VITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELELVILIKK 920
VI IDGP++SGKG +A +A++LGF ++D+G LYR+ N I + I I
Sbjct: 15 VIAIDGPSSSGKGAMASAIAAELGFVHMDTGMLYRIFAAEFAKNYIHSASAENYEICITA 74
Query: 921 LNYNFLGKEVYLNGVNVTTLIRNEKVSNNASKIAKFKNIRKELFKIQVKFRKFP--GLVA 978
+ K + L N + +E V AS I++ +R L IQ +F + G+V
Sbjct: 75 EDRC---KMLSLLAEN-NSQYSSEAVGKAASIISRNGQVRAALLPIQQEFVRSSKRGVVL 130
Query: 979 DGRDMGTTVFPDAFLKIFLTADIKQRTKRRYKQL-MQKGF-SVSMSDLLINLIKRDIRDK 1036
DGRD+ T V PDA +KIF+TA R RRYKQL ++ G V ++ +L+ RDIRD
Sbjct: 131 DGRDIATIVCPDADVKIFITAYASIRALRRYKQLRLRHGTRKVMYKNVFYSLLNRDIRDS 190
Query: 1037 TRNLSPLKCPEQAHLLNTSKMNINQVVNQIL 1067
R+ PL+ ++A+ LN S +N ++Q++
Sbjct: 191 CRSKGPLRRVKEAYYLNNSHINKEISLHQLM 221
>TIGR_CMR|SPO_A0017 [details] [associations]
symbol:SPO_A0017 "cytidylate kinase" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0004127 "cytidylate kinase activity"
evidence=ISS] [GO:0015949 "nucleobase-containing small molecule
interconversion" evidence=ISS] HAMAP:MF_00238 InterPro:IPR000850
InterPro:IPR003136 InterPro:IPR011994 Pfam:PF00406 Pfam:PF02224
GO:GO:0005524 GO:GO:0005737 EMBL:CP000032 GenomeReviews:CP000032_GR
GO:GO:0004127 GO:GO:0006220 KO:K00945 OMA:HIDTGAM
ProtClustDB:PRK00023 PANTHER:PTHR21299:SF2 HOGENOM:HOG000242849
RefSeq:YP_164848.1 ProteinModelPortal:Q5LLM6 GeneID:3196828
KEGG:sil:SPOA0017 PATRIC:23381332 Uniprot:Q5LLM6
Length = 205
Score = 273 (101.2 bits), Expect = 3.1e-22, P = 3.1e-22
Identities = 72/199 (36%), Positives = 109/199 (54%)
Query: 862 ITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELELVILIKKL 921
+ IDGP A+GKGT+++ VA+ GF +LD+G LYR V L+ E + L
Sbjct: 5 VAIDGPAAAGKGTISKAVAAHFGFAHLDTGLLYRAV------GRRTLEGEAAETAA-RDL 57
Query: 922 NYNFLGKEVYLNGVNVTTLIRNEKVSNNASKIAKFKNIRKELFKIQVKF-RKFPGLVADG 980
L ++ +R +V+ ASK+A +R L Q F R+ G V DG
Sbjct: 58 RTEDLERDD----------LRTAQVAQAASKVAVIAEVRAALVDFQRAFARRAGGAVLDG 107
Query: 981 RDMGTTVFPDAFLKIFLTADIKQRTKRRYKQLMQKGFSVSMSDLLINLIKRDIRDKTRNL 1040
RD+GT + P+A +K+F+TA + R +RRY +L KG + + +L ++ +RD RD R
Sbjct: 108 RDIGTVICPEAEVKLFVTASAEVRAERRYLELTAKGQDTTRAAVLADVRERDARDADRAT 167
Query: 1041 SPLKCPEQAHLLNTSKMNI 1059
+P+K E A LL+TS M+I
Sbjct: 168 APMKPAEDAVLLDTSTMDI 186
>TAIR|locus:2145860 [details] [associations]
symbol:RPS1 "ribosomal protein S1" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA] [GO:0016020
"membrane" evidence=IDA] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0006098 "pentose-phosphate shunt" evidence=RCA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009773
"photosynthetic electron transport in photosystem I" evidence=RCA]
[GO:0009902 "chloroplast relocation" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0015995
"chlorophyll biosynthetic process" evidence=RCA] [GO:0019288
"isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0034660 "ncRNA
metabolic process" evidence=RCA] InterPro:IPR003029 Pfam:PF00575
PROSITE:PS50126 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009570 GO:GO:0016020 GO:GO:0003723 GO:GO:0005840
GO:GO:0009579 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 KO:K02945
EMBL:AF370232 EMBL:AY059914 EMBL:AY088230 EMBL:AY142540
IPI:IPI00524792 RefSeq:NP_850903.1 UniGene:At.24389
ProteinModelPortal:Q93VC7 SMR:Q93VC7 STRING:Q93VC7
World-2DPAGE:0003:Q93VC7 PRIDE:Q93VC7 ProMEX:Q93VC7
EnsemblPlants:AT5G30510.1 GeneID:833138 KEGG:ath:AT5G30510
TAIR:At5g30510 HOGENOM:HOG000232530 InParanoid:Q93VC7 OMA:SEISHEH
PhylomeDB:Q93VC7 ProtClustDB:CLSN2680335 ArrayExpress:Q93VC7
Genevestigator:Q93VC7 Uniprot:Q93VC7
Length = 416
Score = 278 (102.9 bits), Expect = 3.6e-21, P = 3.6e-21
Identities = 97/350 (27%), Positives = 163/350 (46%)
Query: 1004 RTKRRYKQLMQKGFSVSMSDLLINLIKRDIRDKTRNLSPLKCPEQAH-LLNTSKMNINQV 1062
R RR + + S S+S ++ + L K E A+ TS M +
Sbjct: 21 RLSRRASKNFPQNKSASVSPTIVAAVAMSSGQTKERLELKKMFEDAYERCRTSPM---EG 77
Query: 1063 VNQILDCFATLFKESLLRHDMRS--GEVISAEVIGLDRNFVIINADLKSEAFIPIEE--- 1117
V +D FA ++ +D S G + V D N +++ KS A++ +E+
Sbjct: 78 VAFTVDDFAAAIEQ----YDFNSEIGTRVKGTVFKTDANGALVDISAKSSAYLSVEQACI 133
Query: 1118 --FKN--DNGELEVKIGDFVSVAIESLENGFGDTILS--RDKAKRLASWLSLEKAMESGE 1171
K+ + G + + +FV + EN D++L R+ LA W +
Sbjct: 134 HRIKHVEEAGIVPGMVEEFVIIG----ENESDDSLLLSLRNIQYELA-WERCRQLQAEDV 188
Query: 1172 IITGTINGKVKGGLTVLTNGLKAFLPGSLVDIRPVKDTTPFEGKTMDFKVIKLDRKRNNV 1231
I+ + G KGGL L GL+ F+P S + + + E K + K +++D ++ +
Sbjct: 189 IVKAKVIGANKGGLVALVEGLRGFVPFSQISSKAAAEEL-LE-KEIPLKFVEVDEEQTKL 246
Query: 1232 VLSHRAVIEESMGEERQKLIETLKEGCTVKGVVKNITDYGAFIDLGGIDGLLHITDIAWR 1291
VLS+R + +S + L G V GVV+++ YGAFID+GGI+GLLH++ I+
Sbjct: 247 VLSNRKAVADSQAQ--------LGIGSVVLGVVQSLKPYGAFIDIGGINGLLHVSQISHD 298
Query: 1292 RVKHPSEILTIGQDISTKILKYDQEKNRVSLGMKQLGIDPWIGLSFRYPR 1341
RV + +L G + IL +D+++ RVSL K+L +P G R P+
Sbjct: 299 RVSDIATVLQPGDTLKVMILSHDRDRGRVSLSTKKL--EPTPGDMIRNPK 346
Score = 143 (55.4 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 56/252 (22%), Positives = 105/252 (41%)
Query: 1257 GCTVKGVVKNITDYGAFIDLGG-IDGLLHITDIAWRRVKHPSEI-LTIGQDISTKILKYD 1314
G VKG V GA +D+ L + R+KH E + G I+ +
Sbjct: 99 GTRVKGTVFKTDANGALVDISAKSSAYLSVEQACIHRIKHVEEAGIVPGMVEEFVIIGEN 158
Query: 1315 QEKNRVSLGMKQLGID-PWIGLSFRYPRGTRLLGKVTNLTDYGAFVEIEKGIEGLVHISE 1373
+ + + L ++ + + W + KV + G V + +G+ G V S+
Sbjct: 159 ESDDSLLLSLRNIQYELAWERCRQLQAEDVIVKAKVIG-ANKGGLVALVEGLRGFVPFSQ 217
Query: 1374 MDWINKNVTPSKIVQLNDTVEIMILEINEERRRISLGMKQCKDNPWENFXXXXXXXXXXX 1433
I+ ++ L + + +E++EE+ ++ L ++ +
Sbjct: 218 ---ISSKAAAEEL--LEKEIPLKFVEVDEEQTKLVLSNRKAVADSQAQLGIGSVVLGVVQ 272
Query: 1434 XXXXXXTDFGIFIGLDGNIDGLIHLSDLSWTDPGEEIIRNFKKGDEIEAIILSIDVEKER 1493
+G FI + G I+GL+H+S +S D +I + GD ++ +ILS D ++ R
Sbjct: 273 SLK----PYGAFIDI-GGINGLLHVSQISH-DRVSDIATVLQPGDTLKVMILSHDRDRGR 326
Query: 1494 ISLGIKQLEGDP 1505
+SL K+LE P
Sbjct: 327 VSLSTKKLEPTP 338
>ASPGD|ASPL0000029372 [details] [associations]
symbol:top2 species:162425 "Emericella nidulans"
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=ISS] [GO:0006265 "DNA topological change" evidence=ISS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IEA] [GO:0006325 "chromatin organization"
evidence=IEA] [GO:0042790 "transcription of nuclear large rRNA
transcript from RNA polymerase I promoter" evidence=IEA]
[GO:0007076 "mitotic chromosome condensation" evidence=IEA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR017956
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418 SMART:SM00384
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0006261 EMBL:BN001305
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
EMBL:AACD01000094 GO:GO:0070683 GO:GO:0000712 GO:GO:0000795
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 KO:K03164
HOGENOM:HOG000216693 OMA:ADNKQND OrthoDB:EOG4XPTPZ
RefSeq:XP_663010.1 ProteinModelPortal:Q5B224 SMR:Q5B224
STRING:Q5B224 EnsemblFungi:CADANIAT00003686 GeneID:2871696
KEGG:ani:AN5406.2 Uniprot:Q5B224
Length = 1709
Score = 232 (86.7 bits), Expect = 3.9e-17, Sum P(2) = 3.9e-17
Identities = 55/177 (31%), Positives = 98/177 (55%)
Query: 32 RALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGE--TMGKYHPHGDVSIYDAL 89
R++P + DG+KP R+V++ + + N + VK + G+ ++ YH HGD S++ +
Sbjct: 793 RSIPSMVDGMKPGQRKVMYTVMKRNI---KKDVKVLDLTGQVFSLTAYH-HGDASMHQTI 848
Query: 90 VRMAQSF--SLRCTLVDGQGNFGSI--DGDSAAAMRYTECRLNKISNELLIDLDKETIDF 145
+ +AQ F S ++ GNFGS G A++ RY RL+ + ++ D + +
Sbjct: 849 IGLAQDFVGSNNVNTLEPSGNFGSRLKGGADASSARYIHTRLSPFARKIFHPHDDPILKY 908
Query: 146 ISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGVLYVLHNPE 202
+ + DGKE EP V +P +LING+ GI G +T+IP +N +++D + ++ E
Sbjct: 909 LED-DGKEIEPWVYVPVVPMILINGADGIGTGWSTSIPNYNPEDIVDNLKRMIRGEE 964
Score = 81 (33.6 bits), Expect = 3.9e-17, Sum P(2) = 3.9e-17
Identities = 35/142 (24%), Positives = 66/142 (46%)
Query: 261 IDELPYQVNKKSLLEKISQLVK-EKKLECISNLRDESDKSGMRIVIELKRNEIPEIVLNK 319
+ ELP + + + K+ +++K +K I + +D + S + +V++L + E + +
Sbjct: 1003 VTELPIRTWTQDFINKLEEMIKADKAPSLIKDYKDYNTNSDVHLVLQLDEKNVKEPLTQE 1062
Query: 320 -LYKQTQLQNTFGMNMLALVN--GQ-PKLLNLKEILYYFILHRKEVIKRRTIFELRKARE 375
L ++ +L T L N GQ K N++ IL F R + +R +L + +
Sbjct: 1063 FLEEKFKLSKTIATTNLVAFNAEGQMTKYPNVEAILEEFYRLRLKFYGKRKQHQLDQLQI 1122
Query: 376 YAHILEGLTIALTNIDNFIQII 397
LE LTN F+Q+I
Sbjct: 1123 E---LE----KLTNQARFVQMI 1137
Score = 47 (21.6 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 14/68 (20%), Positives = 33/68 (48%)
Query: 903 NNNIQLDNELELVILIKKLNYNFLGKEVYLNGVNVTTLIRNEKVSNNASKIAKFKNIRKE 962
N+++ L +L+ + + L FL ++ L+ TT + +K + I +E
Sbjct: 1041 NSDVHLVLQLDEKNVKEPLTQEFLEEKFKLSKTIATTNLVAFNAEGQMTKYPNVEAILEE 1100
Query: 963 LFKIQVKF 970
+++++KF
Sbjct: 1101 FYRLRLKF 1108
Score = 45 (20.9 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
Identities = 16/62 (25%), Positives = 29/62 (46%)
Query: 968 VKFRKFPGLVADGRDMGTTVFPDAFLKIFLTADIKQRTKRRYKQLMQKGFSVSMSDLLIN 1027
+K K P L+ D +D T D L + L D K + ++ +++ F +S + N
Sbjct: 1023 IKADKAPSLIKDYKDYNTN--SDVHLVLQL--DEKNVKEPLTQEFLEEKFKLSKTIATTN 1078
Query: 1028 LI 1029
L+
Sbjct: 1079 LV 1080
>UNIPROTKB|Q5B224 [details] [associations]
symbol:AN5406.2 "DNA topoisomerase 2" species:227321
"Aspergillus nidulans FGSC A4" [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR017956
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418 SMART:SM00384
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0006261 EMBL:BN001305
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
EMBL:AACD01000094 GO:GO:0070683 GO:GO:0000712 GO:GO:0000795
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 KO:K03164
HOGENOM:HOG000216693 OMA:ADNKQND OrthoDB:EOG4XPTPZ
RefSeq:XP_663010.1 ProteinModelPortal:Q5B224 SMR:Q5B224
STRING:Q5B224 EnsemblFungi:CADANIAT00003686 GeneID:2871696
KEGG:ani:AN5406.2 Uniprot:Q5B224
Length = 1709
Score = 232 (86.7 bits), Expect = 3.9e-17, Sum P(2) = 3.9e-17
Identities = 55/177 (31%), Positives = 98/177 (55%)
Query: 32 RALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGE--TMGKYHPHGDVSIYDAL 89
R++P + DG+KP R+V++ + + N + VK + G+ ++ YH HGD S++ +
Sbjct: 793 RSIPSMVDGMKPGQRKVMYTVMKRNI---KKDVKVLDLTGQVFSLTAYH-HGDASMHQTI 848
Query: 90 VRMAQSF--SLRCTLVDGQGNFGSI--DGDSAAAMRYTECRLNKISNELLIDLDKETIDF 145
+ +AQ F S ++ GNFGS G A++ RY RL+ + ++ D + +
Sbjct: 849 IGLAQDFVGSNNVNTLEPSGNFGSRLKGGADASSARYIHTRLSPFARKIFHPHDDPILKY 908
Query: 146 ISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGVLYVLHNPE 202
+ + DGKE EP V +P +LING+ GI G +T+IP +N +++D + ++ E
Sbjct: 909 LED-DGKEIEPWVYVPVVPMILINGADGIGTGWSTSIPNYNPEDIVDNLKRMIRGEE 964
Score = 81 (33.6 bits), Expect = 3.9e-17, Sum P(2) = 3.9e-17
Identities = 35/142 (24%), Positives = 66/142 (46%)
Query: 261 IDELPYQVNKKSLLEKISQLVK-EKKLECISNLRDESDKSGMRIVIELKRNEIPEIVLNK 319
+ ELP + + + K+ +++K +K I + +D + S + +V++L + E + +
Sbjct: 1003 VTELPIRTWTQDFINKLEEMIKADKAPSLIKDYKDYNTNSDVHLVLQLDEKNVKEPLTQE 1062
Query: 320 -LYKQTQLQNTFGMNMLALVN--GQ-PKLLNLKEILYYFILHRKEVIKRRTIFELRKARE 375
L ++ +L T L N GQ K N++ IL F R + +R +L + +
Sbjct: 1063 FLEEKFKLSKTIATTNLVAFNAEGQMTKYPNVEAILEEFYRLRLKFYGKRKQHQLDQLQI 1122
Query: 376 YAHILEGLTIALTNIDNFIQII 397
LE LTN F+Q+I
Sbjct: 1123 E---LE----KLTNQARFVQMI 1137
Score = 47 (21.6 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 14/68 (20%), Positives = 33/68 (48%)
Query: 903 NNNIQLDNELELVILIKKLNYNFLGKEVYLNGVNVTTLIRNEKVSNNASKIAKFKNIRKE 962
N+++ L +L+ + + L FL ++ L+ TT + +K + I +E
Sbjct: 1041 NSDVHLVLQLDEKNVKEPLTQEFLEEKFKLSKTIATTNLVAFNAEGQMTKYPNVEAILEE 1100
Query: 963 LFKIQVKF 970
+++++KF
Sbjct: 1101 FYRLRLKF 1108
Score = 45 (20.9 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
Identities = 16/62 (25%), Positives = 29/62 (46%)
Query: 968 VKFRKFPGLVADGRDMGTTVFPDAFLKIFLTADIKQRTKRRYKQLMQKGFSVSMSDLLIN 1027
+K K P L+ D +D T D L + L D K + ++ +++ F +S + N
Sbjct: 1023 IKADKAPSLIKDYKDYNTN--SDVHLVLQL--DEKNVKEPLTQEFLEEKFKLSKTIATTN 1078
Query: 1028 LI 1029
L+
Sbjct: 1079 LV 1080
>UNIPROTKB|Q7S9W8 [details] [associations]
symbol:NCU06338 "DNA topoisomerase 2" species:367110
"Neurospora crassa OR74A" [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR017956
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00384 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 GO:GO:0070683 GO:GO:0000712
GO:GO:0000795 GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 Gene3D:1.10.268.10 eggNOG:COG0187
Gene3D:3.40.50.670 KO:K03164 HOGENOM:HOG000216693 OrthoDB:EOG4XPTPZ
EMBL:AABX02000026 RefSeq:XP_962372.2 UniGene:Ncr.23351
ProteinModelPortal:Q7S9W8 SMR:Q7S9W8 STRING:Q7S9W8
EnsemblFungi:EFNCRT00000006113 GeneID:3878536 KEGG:ncr:NCU06338
OMA:FFTLPQY Uniprot:Q7S9W8
Length = 1909
Score = 272 (100.8 bits), Expect = 8.9e-17, Sum P(2) = 8.9e-17
Identities = 87/332 (26%), Positives = 160/332 (48%)
Query: 32 RALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGETMGKYHPHGDVSIYDALVR 91
R++P + DGLKP R+VLF + N + ++ V+ A V + YH HG+ S+ ++
Sbjct: 799 RSIPSMVDGLKPGQRKVLFGCFKQNLIHDQKVVELAGYVSKEAA-YH-HGEQSLQQTIIG 856
Query: 92 MAQSF--SLRCTLVDGQGNFGS-IDGDS-AAAMRYTECRLNKISNELLIDLDKETIDFIS 147
+AQ+F S ++ GNFGS + G S AA+ RY RL+ ++ ++ LD+ ++F
Sbjct: 857 LAQNFVGSNNINCLEPSGNFGSRLSGGSDAASARYIHTRLSPLARKIFHPLDEPNLEFQF 916
Query: 148 NYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGVLYVLHNPECSIND 207
+ DGK EP V IP +L+NG+ GI G +T+IP ++ ++++ + + +
Sbjct: 917 D-DGKLIEPKVYAPIIPMVLVNGADGIGTGWSTSIPNYHPLDIVENLKRRMGRDSSGDGE 975
Query: 208 LIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRAKTHIEEFNRENRTAIIIDELPYQ 267
P P G + G R I E N +N + + ELP +
Sbjct: 976 -----EKPFEPMTPWFRGWKGTPEP--DGPNRFKFNG---IVEVNPQNPNEVDVTELPIR 1025
Query: 268 VNKKSLLEKISQLVK-EKKLECISNLRDESDKSGMRIVIELKRNEIPEIVLNKLYKQTQL 326
+ K+ ++++ +K I + ++ +D + +I L+ + + + L ++ +L
Sbjct: 1026 MWTDDFKSKLEEIIRGDKSPSWIKDYKEYNDHQTVHFIIALEEKHMSSALRDGLIEKFKL 1085
Query: 327 QNTFGM-NMLAL-VNGQ-PKLLNLKEIL--YY 353
T N++A G+ K N +EI+ YY
Sbjct: 1086 TKTVATTNLVAFDTRGKIHKYENPQEIMEEYY 1117
Score = 38 (18.4 bits), Expect = 8.9e-17, Sum P(2) = 8.9e-17
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 1514 DKGSLVNGIIKSIDTNKGAIIQL 1536
D GSLV GI T++G + L
Sbjct: 1663 DVGSLVKGIGAPAATSEGPRLSL 1685
>ZFIN|ZDB-GENE-030131-2453 [details] [associations]
symbol:top2a "topoisomerase (DNA) II alpha"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;ISS;IBA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0006259 "DNA metabolic
process" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA;ISS;IBA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0007059 "chromosome segregation" evidence=ISS;IMP] [GO:0009330
"DNA topoisomerase complex (ATP-hydrolyzing)" evidence=ISS]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
[GO:0030261 "chromosome condensation" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=IBA] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IBA] [GO:0000795 "synaptonemal complex"
evidence=IBA] [GO:0000819 "sister chromatid segregation"
evidence=IBA] [GO:0006312 "mitotic recombination" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0009295 "nucleoid" evidence=IBA] [GO:0031100 "organ
regeneration" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
[GO:0003916 "DNA topoisomerase activity" evidence=IEA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 ZFIN:ZDB-GENE-030131-2453
GO:GO:0005524 GO:GO:0031100 GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 KO:K03164 CTD:7153 HOVERGEN:HBG052998
EMBL:AY648832 IPI:IPI00488403 RefSeq:NP_001003834.1
UniGene:Dr.119089 UniGene:Dr.31760 ProteinModelPortal:Q6DRC7
SMR:Q6DRC7 STRING:Q6DRC7 GeneID:323733 KEGG:dre:323733
NextBio:20808410 Uniprot:Q6DRC7
Length = 1574
Score = 236 (88.1 bits), Expect = 3.4e-15, P = 3.4e-15
Identities = 92/345 (26%), Positives = 160/345 (46%)
Query: 32 RALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGET--MGKYHPHGDVSIYDAL 89
R++P + DGLKP R+V+F + N+ + VK A++ G M YH HG+VS+ +
Sbjct: 712 RSIPCMVDGLKPGQRKVVFCCFKRND---KREVKVAQLAGSVAEMSAYH-HGEVSLMMTI 767
Query: 90 VRMAQSF--SLRCTLVDGQGNFGSI--DGDSAAAMRYTECRLNKISNELLIDLDKETIDF 145
V +AQ+F S L+ G FG+ G +A+ RY L+ ++ L +D + +
Sbjct: 768 VGLAQNFVGSNNLNLLQPLGQFGTRLHGGKDSASPRYIFTMLSTLARLLFPVVDDNLLKY 827
Query: 146 ISNYDGKEK-EPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGVLYVLHNPECS 204
NYD + EP IP +L NG GI G A+ IP +++ E+I+ + +++ E
Sbjct: 828 --NYDDYLRVEPEWYMPIIPLVLANGGEGIGTGWASRIPKYDVREIINNIHRMINGEEP- 884
Query: 205 INDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRAKTHIEEFNRENRTAIIIDEL 264
+ ++ P + G + + Y G V I T IE +T
Sbjct: 885 ----LPMVNLPSYK--GFKGTIDELAKNQYVNNGEVAIIDSTTIEITELPVKTWT----- 933
Query: 265 PYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVIELKRNEIPEIVLNKLYKQT 324
P K+++LE + EK I++ ++ + +R V+++ + E L+K
Sbjct: 934 PGLTYKENVLEVMLNGT-EKVPALITDYKEYHTDTTVRFVVKMTEERLREAEAAGLHKVF 992
Query: 325 QLQNTFGMNMLAL---VNGQPKLLNLKEILY-YFILHRKEVIKRR 365
+LQN N + L V K ++++IL +F L K + R+
Sbjct: 993 KLQNLLTCNSMVLFDHVGSLKKYESVQDILKEFFELRMKYYVLRK 1037
>DICTYBASE|DDB_G0279737 [details] [associations]
symbol:top2mt "DNA topoisomerase II" species:44689
"Dictyostelium discoideum" [GO:0006265 "DNA topological change"
evidence=IEA;IC;IBA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;ISS;IBA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0006259 "DNA metabolic process" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0009295 "nucleoid" evidence=IBA]
[GO:0044774 "mitotic DNA integrity checkpoint" evidence=IBA]
[GO:0007059 "chromosome segregation" evidence=IBA] [GO:0006312
"mitotic recombination" evidence=IBA] [GO:0006261 "DNA-dependent
DNA replication" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0000795 "synaptonemal complex"
evidence=IBA] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IBA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0003916 "DNA
topoisomerase activity" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
SMART:SM00434 dictyBase:DDB_G0279737 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005739 GO:GO:0005524
GenomeReviews:CM000152_GR GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 EMBL:AAFI02000032 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
GO:GO:0070683 GO:GO:0000712 GO:GO:0000795 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
EMBL:D82024 PIR:T30577 RefSeq:XP_641531.1 ProteinModelPortal:P90520
STRING:P90520 EnsemblProtists:DDB0214907 GeneID:8622204
KEGG:ddi:DDB_G0279737 OMA:MQDRRER ProtClustDB:PTZ00108
Uniprot:P90520
Length = 1284
Score = 231 (86.4 bits), Expect = 3.7e-15, Sum P(2) = 3.7e-15
Identities = 63/197 (31%), Positives = 111/197 (56%)
Query: 19 KSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGETMGK-- 76
K + Y+ + + R++P + DGLKP R++LFA + L N +K +++ G +
Sbjct: 796 KELIHYSWAANL-RSIPSLIDGLKPGQRKILFASFK-RRLTNE--IKVSQLSGYVAEQTS 851
Query: 77 YHPHGDVSIYDALVRMAQSF--SLRCTLVDGQGNFGS-IDGDS-AAAMRYTECRLNKISN 132
YH HG+ S+ +V+MA +F S L+ G FG+ + G S +A+ RY +L ++
Sbjct: 852 YH-HGEQSLNSTIVKMAHNFVGSNNLPLLTPSGQFGTRLQGGSDSASARYIFTKLEPVAR 910
Query: 133 ELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVID 192
L +LD ++++ +G+ +P IP LL+NGS GI VGM+T+IP + ++ID
Sbjct: 911 YLFNELDDPLLNYLEE-EGESIQPDYYIPIIPMLLVNGSEGIGVGMSTSIPLFSPIDIID 969
Query: 193 GVLYVLHNPECSINDLI 209
++ L+N + ++ LI
Sbjct: 970 QLMLRLNN-QVALKKLI 985
Score = 60 (26.2 bits), Expect = 3.7e-15, Sum P(2) = 3.7e-15
Identities = 28/101 (27%), Positives = 49/101 (48%)
Query: 394 IQIIRSTSTPQEAKNKIIESTWNLPDVSKIIGFNKKNYNTISKINNISKLQNNDMYKLSD 453
+ I R TS +E N +I+ DV K F + N T + ++ L NN + ++ D
Sbjct: 1020 LPIGRWTSDYKEVLNDLIDK-----DVIK--SFQESN--TENSVHFTILLNNNQLEQMED 1070
Query: 454 IQAQEILKM-PLQ-----RLTNMEQKKIINKYENVIKKVID 488
+ E++K+ L LT ++ I K E+V +++ID
Sbjct: 1071 LTENELIKLFKLSASLNFHLTCFDENSKIQKLESV-EEIID 1110
Score = 37 (18.1 bits), Expect = 9.0e-13, Sum P(2) = 9.0e-13
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 744 LLVSNNQKQSVLTATEN 760
+L++NNQ + + TEN
Sbjct: 1058 ILLNNNQLEQMEDLTEN 1074
>UNIPROTKB|P41515 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2-alpha" species:10029
"Cricetulus griseus" [GO:0000287 "magnesium ion binding"
evidence=ISS] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] [GO:0008301 "DNA binding,
bending" evidence=ISS] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
GO:GO:0000287 GO:GO:0008301 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 PROSITE:PS50880 CTD:7153
HOVERGEN:HBG052998 EMBL:L04607 PIR:A44406 RefSeq:NP_001233667.1
ProteinModelPortal:P41515 SMR:P41515 GeneID:100689304
Uniprot:P41515
Length = 1526
Score = 215 (80.7 bits), Expect = 4.5e-15, Sum P(3) = 4.5e-15
Identities = 69/226 (30%), Positives = 108/226 (47%)
Query: 32 RALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGET--MGKYHPHGDVSIYDAL 89
R++P + DGLKP R+VLF + N+ + VK A++ G M YH HG++S+ +
Sbjct: 712 RSIPSMVDGLKPGQRKVLFTCFKRND---KREVKVAQLAGSVAEMSSYH-HGEMSLMMTI 767
Query: 90 VRMAQSF--SLRCTLVDGQGNFGSI--DGDSAAAMRYTECRLNKISNELLIDLDKETIDF 145
+ +AQ+F S L+ G FG+ G +A+ RY L+ ++ L D T+ F
Sbjct: 768 INLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLTRLLFPPKDDHTLKF 827
Query: 146 ISNYDGKEK-EPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGVLYVLHNPECS 204
+ YD ++ EP IP +LING+ GI G + IP ++ EV++ + +L E
Sbjct: 828 L--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDIREVVNNIRRLLDGEE-- 883
Query: 205 INDLIKIIPAPDFPTAGIIYG-LSSVHDGYYTGKGRVIIRAKTHIE 249
P P P+ G + + Y G V I T IE
Sbjct: 884 --------PLPMLPSYKNFKGTIEELASNQYVINGEVAILNSTTIE 921
Score = 77 (32.2 bits), Expect = 4.5e-15, Sum P(3) = 4.5e-15
Identities = 58/236 (24%), Positives = 98/236 (41%)
Query: 255 NRTAIIIDELPY----QVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVIELKRN 310
N T I I ELP Q K+ +LE + EK I++ R+ + ++ VI++
Sbjct: 916 NSTTIEISELPIRTWTQTYKEQVLEPMLNGT-EKTPPLITDYREYHTDTTVKFVIKMTEE 974
Query: 311 EIPEIVLNKLYKQTQLQNTFGMNMLAL---VNGQPKLLNLKEILY-YFILHRKEV-IKRR 365
++ E L+K +LQ + N + L V K + +IL +F L K +++
Sbjct: 975 KLAEAERVGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILKDFFELRLKYYGLRKE 1034
Query: 366 TIFELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIG 425
+ + A E A + L ID +II +E +I+ ++ V
Sbjct: 1035 WLLGMLGA-ESAKLNNQARFILEKIDG--KIIIENKPKKELIKVLIQRGYDSDPVKAWKE 1091
Query: 426 FNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYEN 481
+K + + N S +N+D S +L MPL LT E+K + K N
Sbjct: 1092 AQQKVPD--EEENEESDNENSDSVAESGPTFNYLLDMPLWYLTK-EKKDELCKQRN 1144
Score = 52 (23.4 bits), Expect = 4.5e-15, Sum P(3) = 4.5e-15
Identities = 23/85 (27%), Positives = 39/85 (45%)
Query: 1148 ILSRDKAKRLASWLSLEKAMESGEIITGTINGK-VKGGLTVLTNGLKAFLPGSLVDIRPV 1206
+L KR+ +++E E+ + I I + V+G T NGL+ ++ +
Sbjct: 1205 VLPSPHGKRVIPQVTMEMKAEAEKKIRKKIKSENVEG--TPTENGLELGSLKQRIEKKQK 1262
Query: 1207 KDTTPFEGK--TMDFKVIKLDRKRN 1229
K+ K T+ FK IK +KRN
Sbjct: 1263 KEPGAMTKKQTTLAFKPIKKGKKRN 1287
Score = 45 (20.9 bits), Expect = 8.0e-12, Sum P(3) = 8.0e-12
Identities = 22/130 (16%), Positives = 54/130 (41%)
Query: 366 TIFELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIG 425
TI EL + +Y ++ G L + I + + Q K +++E N + + +
Sbjct: 897 TIEELA-SNQY--VINGEVAILNSTTIEISELPIRTWTQTYKEQVLEPMLNGTEKTPPLI 953
Query: 426 FNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKK 485
+ + Y+T + + + K+ + + + ++ K+ N ++ + +KK
Sbjct: 954 TDYREYHTDTTVKFVIKMTEEKLAEAERVGLHKVFKLQTSLTCN---SMVLFDHVGCLKK 1010
Query: 486 VIDLTDILSN 495
+ DIL +
Sbjct: 1011 YDTVLDILKD 1020
>WB|WBGene00019884 [details] [associations]
symbol:R05D3.12 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0000003 "reproduction" evidence=IMP] [GO:0007276 "gamete
generation" evidence=IMP] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
SMART:SM00434 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005739
GO:GO:0005524 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 EMBL:FO081667 GO:GO:0007276
GO:GO:0070683 GO:GO:0000712 GO:GO:0000795 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880
HOGENOM:HOG000216693 GeneTree:ENSGT00390000016222
RefSeq:NP_001129839.2 RefSeq:NP_001254958.1 RefSeq:NP_741252.2
ProteinModelPortal:P34534 SMR:P34534 PaxDb:P34534
EnsemblMetazoa:R05D3.12a GeneID:259522 KEGG:cel:CELE_R05D3.12
UCSC:R05D3.1 CTD:259522 WormBase:R05D3.12a WormBase:R05D3.12b
WormBase:R05D3.12c InParanoid:P34534 OMA:KLEDAEW NextBio:891486
Uniprot:P34534
Length = 1170
Score = 229 (85.7 bits), Expect = 1.3e-14, P = 1.3e-14
Identities = 109/446 (24%), Positives = 205/446 (45%)
Query: 22 LDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGETMGK--YHP 79
+ + M V + R++P + DGLKP R++L+ + +NN+ +K +++ G + YH
Sbjct: 711 MQFGM-VDLKRSIPSLIDGLKPSQRKILWTL--LNNMDESTEIKVSQLAGAVAHRQSYH- 766
Query: 80 HGDVSIYDALVRMAQSF--SLRCTLVDGQGNFGSID--GDSAAAMRYTECRLNKISNELL 135
HG+ S+ ++RM Q+F S L+ G FG+ G+ AA+ RY L + L
Sbjct: 767 HGEESLVRTIIRMGQTFCGSSNLPLLQPIGQFGTRHEGGNDAASARYIFTALAPTTRLLF 826
Query: 136 IDLDKETIDFISNYD-GKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGV 194
D + + N + G EP+ L +P +LING+ GI G +T I N ++ID
Sbjct: 827 PQADDDLLQ--KNVEEGMVVEPTWLCPIVPLILINGTEGIGTGWSTKIANRNPIDIID-- 882
Query: 195 LYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRV-IIRAKTHIEEFNR 253
++ SI+ +I P + G L V + G++ +IR + R
Sbjct: 883 --MIRRKIDSISTEYEIPPFYE-EFRG---KLEVVTPTKFISSGKIQLIRPE-------R 929
Query: 254 ENRTAIIID--ELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVIELKRNE 311
+N + I+ ELP + EK+S++V+ + S E + RI ++ K++
Sbjct: 930 KNASTFSIEIVELPIGIWTSKYKEKLSKIVETLPVLEFSERHTEK-RVHFRITLDRKKSS 988
Query: 312 -IPEIVLNKLYKQTQLQNTFGMNMLALV-NGQPKLL-NLKEILYYFILHRKEVIKRRTIF 368
+ + L +L+ + N + NG+ K N+ EI F R+++ ++R
Sbjct: 989 RFLQKSNSDLLNYFKLRTSLTENRVLFDRNGELKEFGNISEIAAEFFEVRRDLYEKRLKI 1048
Query: 369 ELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIGFNK 428
+ + +E + + N IRS Q + K+ E + + ++ I +K
Sbjct: 1049 QKEECEAKLIYVENQLNFIEMVTNGTIEIRSMGRNQ-LEEKLQEMGFRVDPMATIAKNSK 1107
Query: 429 K-NYNTISKINNISKLQNNDMYKLSD 453
K NY + ++ +S+L +++M +L +
Sbjct: 1108 KANYGYLLEMP-VSRLTSDEMKRLEE 1132
>UNIPROTKB|P34534 [details] [associations]
symbol:R05D3.12 "Putative DNA topoisomerase 2,
mitochondrial" species:6239 "Caenorhabditis elegans" [GO:0009295
"nucleoid" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0006312 "mitotic recombination" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IBA]
[GO:0000819 "sister chromatid segregation" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000712
"resolution of meiotic recombination intermediates" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005739 GO:GO:0005524
GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
EMBL:FO081667 GO:GO:0007276 GO:GO:0070683 GO:GO:0000712
GO:GO:0000795 GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 Gene3D:1.10.268.10 eggNOG:COG0187
Gene3D:3.40.50.670 PROSITE:PS50880 HOGENOM:HOG000216693
GeneTree:ENSGT00390000016222 RefSeq:NP_001129839.2
RefSeq:NP_001254958.1 RefSeq:NP_741252.2 ProteinModelPortal:P34534
SMR:P34534 PaxDb:P34534 EnsemblMetazoa:R05D3.12a GeneID:259522
KEGG:cel:CELE_R05D3.12 UCSC:R05D3.1 CTD:259522 WormBase:R05D3.12a
WormBase:R05D3.12b WormBase:R05D3.12c InParanoid:P34534 OMA:KLEDAEW
NextBio:891486 Uniprot:P34534
Length = 1170
Score = 229 (85.7 bits), Expect = 1.3e-14, P = 1.3e-14
Identities = 109/446 (24%), Positives = 205/446 (45%)
Query: 22 LDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGETMGK--YHP 79
+ + M V + R++P + DGLKP R++L+ + +NN+ +K +++ G + YH
Sbjct: 711 MQFGM-VDLKRSIPSLIDGLKPSQRKILWTL--LNNMDESTEIKVSQLAGAVAHRQSYH- 766
Query: 80 HGDVSIYDALVRMAQSF--SLRCTLVDGQGNFGSID--GDSAAAMRYTECRLNKISNELL 135
HG+ S+ ++RM Q+F S L+ G FG+ G+ AA+ RY L + L
Sbjct: 767 HGEESLVRTIIRMGQTFCGSSNLPLLQPIGQFGTRHEGGNDAASARYIFTALAPTTRLLF 826
Query: 136 IDLDKETIDFISNYD-GKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGV 194
D + + N + G EP+ L +P +LING+ GI G +T I N ++ID
Sbjct: 827 PQADDDLLQ--KNVEEGMVVEPTWLCPIVPLILINGTEGIGTGWSTKIANRNPIDIID-- 882
Query: 195 LYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRV-IIRAKTHIEEFNR 253
++ SI+ +I P + G L V + G++ +IR + R
Sbjct: 883 --MIRRKIDSISTEYEIPPFYE-EFRG---KLEVVTPTKFISSGKIQLIRPE-------R 929
Query: 254 ENRTAIIID--ELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVIELKRNE 311
+N + I+ ELP + EK+S++V+ + S E + RI ++ K++
Sbjct: 930 KNASTFSIEIVELPIGIWTSKYKEKLSKIVETLPVLEFSERHTEK-RVHFRITLDRKKSS 988
Query: 312 -IPEIVLNKLYKQTQLQNTFGMNMLALV-NGQPKLL-NLKEILYYFILHRKEVIKRRTIF 368
+ + L +L+ + N + NG+ K N+ EI F R+++ ++R
Sbjct: 989 RFLQKSNSDLLNYFKLRTSLTENRVLFDRNGELKEFGNISEIAAEFFEVRRDLYEKRLKI 1048
Query: 369 ELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIGFNK 428
+ + +E + + N IRS Q + K+ E + + ++ I +K
Sbjct: 1049 QKEECEAKLIYVENQLNFIEMVTNGTIEIRSMGRNQ-LEEKLQEMGFRVDPMATIAKNSK 1107
Query: 429 K-NYNTISKINNISKLQNNDMYKLSD 453
K NY + ++ +S+L +++M +L +
Sbjct: 1108 KANYGYLLEMP-VSRLTSDEMKRLEE 1132
>UNIPROTKB|F1P2F2 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0040016 "embryonic cleavage" evidence=IEA] [GO:0042803 "protein
homodimerization activity" evidence=IEA] [GO:0042826 "histone
deacetylase binding" evidence=IEA] [GO:0043065 "positive regulation
of apoptotic process" evidence=IEA] [GO:0043130 "ubiquitin binding"
evidence=IEA] [GO:0045870 "positive regulation of retroviral genome
replication" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0000228 "nuclear chromosome" evidence=IEA] [GO:0000793
"condensed chromosome" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0005080 "protein kinase C binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005814 "centriole" evidence=IEA]
[GO:0006265 "DNA topological change" evidence=IEA] [GO:0006266 "DNA
ligation" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0007059 "chromosome segregation"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0008144 "drug binding" evidence=IEA] [GO:0009330
"DNA topoisomerase complex (ATP-hydrolyzing)" evidence=IEA]
[GO:0030263 "apoptotic chromosome condensation" evidence=IEA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR012542 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0007059 GO:GO:0005654 GO:GO:0005730
GO:GO:0005814 GO:GO:0008144 GO:GO:0045944 GO:GO:0003682
GO:GO:0006974 GO:GO:0043065 GO:GO:0030263 Gene3D:3.30.565.10
SUPFAM:SSF55874 GO:GO:0000793 GO:GO:0006266 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000228 GO:GO:0009330
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 GO:GO:0045870
GeneTree:ENSGT00390000016222 EMBL:AADN02068749 IPI:IPI00571557
Ensembl:ENSGALT00000006249 Uniprot:F1P2F2
Length = 1586
Score = 230 (86.0 bits), Expect = 1.5e-14, P = 1.5e-14
Identities = 114/474 (24%), Positives = 200/474 (42%)
Query: 32 RALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGET--MGKYHPHGDVSIYDAL 89
R++P + DGLKP R+VLF + N+ + VK A++ G M YH HG+ S+ +
Sbjct: 735 RSIPSLVDGLKPGQRKVLFTCFKRND---KREVKVAQLAGSVAEMSSYH-HGEASLMMTI 790
Query: 90 VRMAQSF--SLRCTLVDGQGNFGSI--DGDSAAAMRYTECRLNKISNELLIDLDKETIDF 145
+ +AQ+F S L+ G FG+ G +A+ RY L+ ++ L +D + F
Sbjct: 791 INLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLLFPPVDDNVLRF 850
Query: 146 ISNYDGKEK-EPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGVLYVLHNPECS 204
+ YD ++ EP IP +LING+ GI G + IP ++ E ++ + +L E
Sbjct: 851 L--YDDNQRVEPEWYMPIIPMVLINGAEGIGTGWSCKIPNFDIRETVNNIRCLLDGKE-- 906
Query: 205 INDLIKIIPAPDFPTAGIIYG-LSSVHDGYYTGKGRVIIRAKTHIEEFNRENRTAIIIDE 263
P P P+ G + + Y G V I T IE RT
Sbjct: 907 --------PLPMLPSYKNFKGTIDELGPNQYVISGEVSILDSTTIEITELPVRTWT---- 954
Query: 264 LPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVIELKRNEIPEIVLNKLYKQ 323
Q K+ +LE + EK I++ ++ + ++ V+++ ++ E L+K
Sbjct: 955 ---QTYKEQVLEPMLNGT-EKTPPLITDYKEYHTDTTVKFVVKMSEEKLAEAEAVGLHKV 1010
Query: 324 TQLQNTFGMNMLAL---VNGQPKLLNLKEILY-YFILH-RKEVIKRRTIFELRKAREYAH 378
+LQ N + L V K + ++IL +F L R +++ + + A E A
Sbjct: 1011 FKLQTNLTCNSMVLFDHVGFLKKYESPQDILKEFFELRLRYYGLRKEWLIGMLGA-ESAK 1069
Query: 379 ILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIGFNKKNYN---TIS 435
+ L ID +I+ +E +I+ + V K +IS
Sbjct: 1070 LNNQARFILEKIDG--KIVIENKPKKELIQVLIQRGYESDPVKAWKELQNKAIIPSVSIS 1127
Query: 436 KINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVIDL 489
+ + + +L MPL LT ++ ++ + +N K++ DL
Sbjct: 1128 EEEEEGDESGEESAAATGPDFNYLLNMPLWYLTKEKKDELCKQRDNKDKELEDL 1181
>MGI|MGI:98790 [details] [associations]
symbol:Top2a "topoisomerase (DNA) II alpha" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000287 "magnesium ion binding" evidence=ISO] [GO:0000712
"resolution of meiotic recombination intermediates" evidence=IBA]
[GO:0000793 "condensed chromosome" evidence=IDA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003677 "DNA binding" evidence=ISO]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003916 "DNA
topoisomerase activity" evidence=ISO] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity"
evidence=ISO;IGI;IDA] [GO:0005080 "protein kinase C binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005694 "chromosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006200 "ATP catabolic process"
evidence=IGI;IDA] [GO:0006259 "DNA metabolic process" evidence=IEA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=ISO;IDA] [GO:0006266
"DNA ligation" evidence=ISO] [GO:0006312 "mitotic recombination"
evidence=IBA] [GO:0006974 "response to DNA damage stimulus"
evidence=ISO] [GO:0007059 "chromosome segregation"
evidence=ISO;IMP;IDA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISO] [GO:0008144 "drug binding" evidence=ISO] [GO:0008301
"DNA binding, bending" evidence=ISO] [GO:0009330 "DNA topoisomerase
complex (ATP-hydrolyzing)" evidence=ISO] [GO:0016853 "isomerase
activity" evidence=IEA] [GO:0019899 "enzyme binding" evidence=ISO]
[GO:0030261 "chromosome condensation" evidence=IMP] [GO:0030263
"apoptotic chromosome condensation" evidence=ISO] [GO:0040016
"embryonic cleavage" evidence=IMP] [GO:0042803 "protein
homodimerization activity" evidence=ISO] [GO:0042826 "histone
deacetylase binding" evidence=ISO] [GO:0043065 "positive regulation
of apoptotic process" evidence=ISO] [GO:0043130 "ubiquitin binding"
evidence=ISO] [GO:0043234 "protein complex" evidence=ISO]
[GO:0043565 "sequence-specific DNA binding" evidence=ISO]
[GO:0043566 "structure-specific DNA binding" evidence=ISO]
[GO:0044774 "mitotic DNA integrity checkpoint" evidence=IBA]
[GO:0045070 "positive regulation of viral genome replication"
evidence=ISO] [GO:0045870 "positive regulation of retroviral genome
replication" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=ISO] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 MGI:MGI:98790 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005654 GO:GO:0005730 GO:GO:0005814 GO:GO:0042493
GO:GO:0000287 GO:GO:0008144 GO:GO:0007568 GO:GO:0043565
GO:GO:0045944 GO:GO:0003682 GO:GO:0040016 GO:GO:0006974
GO:GO:0006261 GO:GO:0008301 GO:GO:0043065 GO:GO:0030263
Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0030261 GO:GO:0006266
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 GO:GO:0009330 GO:GO:0070683
GO:GO:0000712 GO:GO:0071107 EMBL:AL591067 GO:GO:0000795
GO:GO:0006265 GO:GO:0043566 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 Gene3D:1.10.268.10 eggNOG:COG0187
Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164 CTD:7153
HOGENOM:HOG000216693 HOVERGEN:HBG052998 OrthoDB:EOG4KWJS0
GO:GO:0045870 EMBL:D12513 EMBL:U01915 IPI:IPI00122223 PIR:JS0703
RefSeq:NP_035753.2 UniGene:Mm.4237 ProteinModelPortal:Q01320
SMR:Q01320 IntAct:Q01320 STRING:Q01320 PhosphoSite:Q01320
PaxDb:Q01320 PRIDE:Q01320 Ensembl:ENSMUST00000068031 GeneID:21973
KEGG:mmu:21973 UCSC:uc007lid.1 GeneTree:ENSGT00390000016222
InParanoid:Q01320 OMA:MFKQTWM BindingDB:Q01320 ChEMBL:CHEMBL3586
ChiTaRS:TOP2A NextBio:301670 Bgee:Q01320 CleanEx:MM_TOP2A
Genevestigator:Q01320 GermOnline:ENSMUSG00000020914 Uniprot:Q01320
Length = 1528
Score = 213 (80.0 bits), Expect = 4.8e-14, Sum P(3) = 4.8e-14
Identities = 69/226 (30%), Positives = 108/226 (47%)
Query: 32 RALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGET--MGKYHPHGDVSIYDAL 89
R++P + DGLKP R+VLF + N+ + VK A++ G M YH HG++S+ +
Sbjct: 712 RSIPSMVDGLKPGQRKVLFTCFKRND---KREVKVAQLAGSVAEMSSYH-HGEMSLMMTI 767
Query: 90 VRMAQSF--SLRCTLVDGQGNFGSI--DGDSAAAMRYTECRLNKISNELLIDLDKETIDF 145
+ +AQ+F S L+ G FG+ G +A+ RY L+ ++ L D T+ F
Sbjct: 768 INLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLLFPPKDDHTLRF 827
Query: 146 ISNYDGKEK-EPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGVLYVLHNPECS 204
+ YD ++ EP IP +LING+ GI G + IP ++ EV++ + +L E
Sbjct: 828 L--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRLLDGEE-- 883
Query: 205 INDLIKIIPAPDFPTAGIIYG-LSSVHDGYYTGKGRVIIRAKTHIE 249
P P P+ G + + Y G V I T IE
Sbjct: 884 --------PLPMLPSYKNFKGTIEELASNQYVINGEVAILDSTTIE 921
Score = 62 (26.9 bits), Expect = 4.8e-14, Sum P(3) = 4.8e-14
Identities = 23/85 (27%), Positives = 41/85 (48%)
Query: 257 TAIIIDELPY----QVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVIELKRNEI 312
T I I ELP Q K+ +LE + EK I++ R+ + ++ VI++ ++
Sbjct: 918 TTIEISELPIRTWTQTYKEQVLEPMLNGT-EKTPSLITDYREYHTDTTVKFVIKMTEEKL 976
Query: 313 PEIVLNKLYKQTQLQNTFGMNMLAL 337
E L+K +LQ++ N + L
Sbjct: 977 AEAERVGLHKVFKLQSSLTCNSMVL 1001
Score = 59 (25.8 bits), Expect = 4.8e-14, Sum P(3) = 4.8e-14
Identities = 34/137 (24%), Positives = 58/137 (42%)
Query: 1148 ILSRDKAKRLASWLSLEKAMESGEIITGTINGK-VKGGLTVLTNGLKAFLPGSL---VDI 1203
+L + KR+ +++E E+ + I I + V+G T +G + PGSL ++
Sbjct: 1208 VLPSPRGKRVIPQVTVEMKAEAEKKIRKKIKSENVEG--TPAEDGAE---PGSLRQRIEK 1262
Query: 1204 RPVKDTTPFEGKTMDFKVIKLDRKRNNVVLSHRAVIEESMGEERQKLIETLKEGCTVKGV 1263
+ K+ + T+ FK +K RK+N S V S E + KE +
Sbjct: 1263 KQKKEPGAKKQTTLPFKPVKKGRKKNPWSDSESDV---SSNESNVDVPPRQKEQRSAAAK 1319
Query: 1264 VKNITDYGAFIDLGGID 1280
K D + D G+D
Sbjct: 1320 AKFTVDLDSDEDFSGLD 1336
Score = 43 (20.2 bits), Expect = 4.0e-12, Sum P(3) = 4.0e-12
Identities = 20/115 (17%), Positives = 50/115 (43%)
Query: 379 ILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIGFNKKNYNTISKIN 438
IL+ TI ++ + IR+ + Q K +++E N + + + + + Y+T + +
Sbjct: 914 ILDSTTIEISELP-----IRTWT--QTYKEQVLEPMLNGTEKTPSLITDYREYHTDTTVK 966
Query: 439 NISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVIDLTDIL 493
+ K+ + + + ++ K+ N ++ + +KK + DIL
Sbjct: 967 FVIKMTEEKLAEAERVGLHKVFKLQSSLTCN---SMVLFDHVGCLKKYDTVLDIL 1018
>UNIPROTKB|Q755V8 [details] [associations]
symbol:AER410W "DNA topoisomerase 2" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0006261
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
EMBL:AE016818 GenomeReviews:AE016818_GR GO:GO:0070683 GO:GO:0000712
GO:GO:0000795 GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 Gene3D:1.10.268.10 Gene3D:3.40.50.670 KO:K03164
HOGENOM:HOG000216693 OMA:AKEYFQD OrthoDB:EOG4XPTPZ
RefSeq:NP_985265.1 ProteinModelPortal:Q755V8 SMR:Q755V8
STRING:Q755V8 EnsemblFungi:AAS53089 GeneID:4621483
KEGG:ago:AGOS_AER410W PhylomeDB:Q755V8 Uniprot:Q755V8
Length = 1427
Score = 217 (81.4 bits), Expect = 5.6e-14, Sum P(2) = 5.6e-14
Identities = 57/177 (32%), Positives = 93/177 (52%)
Query: 32 RALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVK--CARVVGETMGKYHPHGDVSIYDAL 89
R++P + DGLKP R+V+F + N + V+ A V G+T YH H + S+ +
Sbjct: 697 RSIPHLLDGLKPSQRKVIFGSFKRNIMKTEIKVQELAAYVSGQTA--YH-HTEQSLVQTI 753
Query: 90 VRMAQSF--SLRCTLVDGQGNFGS--IDGDSAAAMRYTECRLNKISNELLIDLDKETIDF 145
V +AQ F + L+ +G FG+ G AAA RY +LN IS + LD + +
Sbjct: 754 VSLAQDFVGANNIYLLMPRGAFGTRATGGKDAAAARYIFTQLNSISKHVFNPLDNPLLTY 813
Query: 146 ISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGVLYVLHNPE 202
+ + D K EP +P +L+NG+ GI G +T+IPP N ++++ + ++ E
Sbjct: 814 VQD-DEKTVEPEWYVPALPMVLVNGAEGIGTGWSTSIPPFNPIDIVNNLRKLMRGDE 869
Score = 64 (27.6 bits), Expect = 5.6e-14, Sum P(2) = 5.6e-14
Identities = 52/293 (17%), Positives = 111/293 (37%)
Query: 308 KRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVIKRRTI 367
K N++ EI+ + Y + + M+ + Q + L+ + I+ + + ++
Sbjct: 994 KYNDVKEILTDFFYVRLEFYQKRKDYMIERLQWQLEKLSFQVKFIKMIIDEELRVTKKAR 1053
Query: 368 FELRKARE---YAHI-LEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKI 423
L K E + + EG ID ++ + S P+E ++ E + D + +
Sbjct: 1054 SVLMKELESLGFPRVDAEGKP-HFEKIDEDLEEM-DASDPEEFAEELDEQGGEVADENVV 1111
Query: 424 IG----FNKKNYNTISKINNISKLQNNDMYKLS---DIQAQEILKMPLQRLTNMEQKKII 476
+G F Y KI +++K + + + + + QE+L + L N + +
Sbjct: 1112 VGPLEKFGTYEYLLGMKIWSLTKEKYERLLREKQNKEAELQELLGKSAKDLWNADLDMFV 1171
Query: 477 NKYENVIKKVIDLTD--I------LSNSKRXXXXXXXXXXXXKNKYGSHKKNIRRSEIIL 528
+YE IK ++ D I + KR K S K ++ + +
Sbjct: 1172 REYEEFIKYDTEVRDGTIRAVGSKVKGKKRAHKDDDDYNPSKKKPAKSSVKKLKTEQPVE 1231
Query: 529 NAI-NPSTEDLIASQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDE 580
+ P T++ + V T +N+ K P + ++ ++K E
Sbjct: 1232 RILLEPPTQEQVKKPAKVKTETNVSIPKQTPTPKSKSASASSSKVPTPLSKQE 1284
Score = 43 (20.2 bits), Expect = 8.4e-12, Sum P(2) = 8.4e-12
Identities = 13/63 (20%), Positives = 32/63 (50%)
Query: 431 YNTISKINNISKLQNNDMYKLSDIQAQ-EILKMPLQRLTNMEQKKIINKYENVIKKVIDL 489
+N I +NN+ KL D + D+ +Q++ + ++ +I + E V + +++
Sbjct: 852 FNPIDIVNNLRKLMRGD--EPDDMAPWFRGWNGTMQKI-DAQRYRIFGRIEQVGENTVEI 908
Query: 490 TDI 492
T++
Sbjct: 909 TEL 911
>RGD|62048 [details] [associations]
symbol:Top2a "topoisomerase (DNA) II alpha" species:10116 "Rattus
norvegicus" [GO:0000287 "magnesium ion binding" evidence=ISO;ISS]
[GO:0000712 "resolution of meiotic recombination intermediates"
evidence=IBA] [GO:0000793 "condensed chromosome" evidence=ISO]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000819 "sister
chromatid segregation" evidence=IBA] [GO:0003677 "DNA binding"
evidence=ISO;TAS] [GO:0003682 "chromatin binding" evidence=ISO;IDA]
[GO:0003916 "DNA topoisomerase activity" evidence=IDA] [GO:0003918
"DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=ISO;IDA] [GO:0005080 "protein kinase C binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IDA;TAS]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006261 "DNA-dependent DNA
replication" evidence=IBA] [GO:0006265 "DNA topological change"
evidence=ISO;IDA] [GO:0006266 "DNA ligation" evidence=ISO]
[GO:0006312 "mitotic recombination" evidence=IBA] [GO:0006974
"response to DNA damage stimulus" evidence=ISO] [GO:0007059
"chromosome segregation" evidence=ISO;IBA] [GO:0007420 "brain
development" evidence=IEP] [GO:0007568 "aging" evidence=IEP]
[GO:0008022 "protein C-terminus binding" evidence=ISO] [GO:0008094
"DNA-dependent ATPase activity" evidence=ISO] [GO:0008144 "drug
binding" evidence=ISO] [GO:0008301 "DNA binding, bending"
evidence=ISO;ISS] [GO:0009295 "nucleoid" evidence=IBA] [GO:0009330
"DNA topoisomerase complex (ATP-hydrolyzing)" evidence=ISO;IDA]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0021702 "cerebellar
Purkinje cell differentiation" evidence=IEP] [GO:0021707 "cerebellar
granule cell differentiation" evidence=IEP] [GO:0030261 "chromosome
condensation" evidence=ISO] [GO:0030263 "apoptotic chromosome
condensation" evidence=ISO] [GO:0040016 "embryonic cleavage"
evidence=ISO] [GO:0042493 "response to drug" evidence=IEP]
[GO:0042803 "protein homodimerization activity" evidence=ISO]
[GO:0042826 "histone deacetylase binding" evidence=ISO] [GO:0043065
"positive regulation of apoptotic process" evidence=ISO] [GO:0043130
"ubiquitin binding" evidence=ISO] [GO:0043234 "protein complex"
evidence=ISO] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0043566 "structure-specific DNA binding"
evidence=IDA] [GO:0045070 "positive regulation of viral genome
replication" evidence=ISO] [GO:0045870 "positive regulation of
retroviral genome replication" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0046982 "protein heterodimerization activity"
evidence=ISO] [GO:0071107 "response to parathyroid hormone stimulus"
evidence=IEP] [GO:0000228 "nuclear chromosome" evidence=ISO]
[GO:0005814 "centriole" evidence=ISO] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 RGD:62048 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005654 GO:GO:0005730 GO:GO:0005814 GO:GO:0042493
GO:GO:0000287 GO:GO:0008144 GO:GO:0007568 GO:GO:0043565
GO:GO:0045944 GO:GO:0003682 GO:GO:0040016 GO:GO:0006974
GO:GO:0006261 GO:GO:0008301 GO:GO:0043065 GO:GO:0030263
Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0006266 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
GO:GO:0009330 GO:GO:0070683 GO:GO:0000712 GO:GO:0071107
GO:GO:0000795 GO:GO:0006265 GO:GO:0043566 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10 eggNOG:COG0187
Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164 CTD:7153
HOGENOM:HOG000216693 HOVERGEN:HBG052998 OrthoDB:EOG4KWJS0
GO:GO:0045870 EMBL:Z46372 EMBL:Z19552 EMBL:Z29676 IPI:IPI00193944
PIR:A48536 PIR:JN0598 RefSeq:NP_071519.2 UniGene:Rn.90996
ProteinModelPortal:P41516 SMR:P41516 STRING:P41516 PRIDE:P41516
GeneID:360243 KEGG:rno:360243 BindingDB:P41516 ChEMBL:CHEMBL3400
NextBio:672745 ArrayExpress:P41516 Genevestigator:P41516
Uniprot:P41516
Length = 1526
Score = 213 (80.0 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 69/226 (30%), Positives = 108/226 (47%)
Query: 32 RALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGET--MGKYHPHGDVSIYDAL 89
R++P + DGLKP R+VLF + N+ + VK A++ G M YH HG++S+ +
Sbjct: 711 RSIPSMVDGLKPGQRKVLFTCFKRND---KREVKVAQLAGSVAEMSSYH-HGEMSLMMTI 766
Query: 90 VRMAQSF--SLRCTLVDGQGNFGSI--DGDSAAAMRYTECRLNKISNELLIDLDKETIDF 145
+ +AQ+F S L+ G FG+ G +A+ RY L+ ++ L D T+ F
Sbjct: 767 INLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLLFPSKDDHTLRF 826
Query: 146 ISNYDGKEK-EPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGVLYVLHNPECS 204
+ YD ++ EP IP +LING+ GI G + IP ++ EV++ + +L E
Sbjct: 827 L--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRLLDGEE-- 882
Query: 205 INDLIKIIPAPDFPTAGIIYG-LSSVHDGYYTGKGRVIIRAKTHIE 249
P P P+ G + + Y G V I T IE
Sbjct: 883 --------PLPMLPSYKNYKGTIEELASNQYVINGEVAILNSTTIE 920
Score = 64 (27.6 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 24/87 (27%), Positives = 41/87 (47%)
Query: 255 NRTAIIIDELPY----QVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVIELKRN 310
N T I I ELP Q K+ +LE + EK I++ R+ + ++ VI++
Sbjct: 915 NSTTIEITELPIRTWTQTYKEQVLEPMLNGT-EKTPPLITDYREYHTDTTVKFVIKMTEE 973
Query: 311 EIPEIVLNKLYKQTQLQNTFGMNMLAL 337
++ E L+K +LQ + N + L
Sbjct: 974 KLAEAERVGLHKVFKLQTSLTCNSMVL 1000
Score = 45 (20.9 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 21/115 (18%), Positives = 49/115 (42%)
Query: 379 ILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIGFNKKNYNTISKIN 438
IL TI +T + IR+ + Q K +++E N + + + + + Y+T + +
Sbjct: 913 ILNSTTIEITELP-----IRTWT--QTYKEQVLEPMLNGTEKTPPLITDYREYHTDTTVK 965
Query: 439 NISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVIDLTDIL 493
+ K+ + + + ++ K+ N ++ + +KK + DIL
Sbjct: 966 FVIKMTEEKLAEAERVGLHKVFKLQTSLTCN---SMVLFDHVGCLKKYDTVLDIL 1017
>UNIPROTKB|Q7RJ69 [details] [associations]
symbol:PY03394 "DNA topoisomerase 2" species:73239
"Plasmodium yoelii yoelii" [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0006261
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
GO:GO:0070683 GO:GO:0000712 GO:GO:0000795 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 KO:K03164 EMBL:AABL01000973
RefSeq:XP_731396.1 HSSP:P06786 ProteinModelPortal:Q7RJ69
STRING:Q7RJ69 GeneID:3830618 KEGG:pyo:PY03394
EuPathDB:PlasmoDB:PY03394 Uniprot:Q7RJ69
Length = 1489
Score = 206 (77.6 bits), Expect = 2.1e-13, Sum P(4) = 2.1e-13
Identities = 55/177 (31%), Positives = 92/177 (51%)
Query: 32 RALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGETM--GKYHPHGDVSIYDAL 89
R++P++ DG KP R+VL+ + NL N K A++VG YH HG+ S+ +
Sbjct: 743 RSIPNIMDGWKPGQRKVLYGCFK-RNLKNE--CKVAQLVGYIAEHSAYH-HGESSLQQTI 798
Query: 90 VRMAQSF--SLRCTLVDGQGNFGSID--GDSAAAMRYTECRLNKISNELLIDLDKETIDF 145
+ MAQ+F S ++ G FGS G A+A RY +L + + + D + +
Sbjct: 799 INMAQTFVGSNNINFLEPCGQFGSRKEGGKDASAARYIFTKLASSTRSIFNEYDDPILKY 858
Query: 146 ISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGVL-YVLHNP 201
+ N +G++ EP IP +L+NG GI G ++ IP +N ++I+ + Y+ P
Sbjct: 859 L-NEEGQKIEPQYYIPVIPTILVNGCEGIGTGYSSFIPNYNYKDIINNIKKYIDKEP 914
Score = 70 (29.7 bits), Expect = 2.1e-13, Sum P(4) = 2.1e-13
Identities = 36/166 (21%), Positives = 67/166 (40%)
Query: 233 YYTGKGRVIIRAKTHIEEF---NRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECI 289
Y KGR+ K+ E N+ + + I ELP + + E + +L+ ++K + I
Sbjct: 922 YKDFKGRIEPNGKSGYETIGIINKIDDETLEITELPIKRWTQDYKEFLEELLTDEKNQLI 981
Query: 290 SNLRDESDKSGMRIVIELKRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLK- 348
+ D S + I++ ++ L K +L++T + L + + KL
Sbjct: 982 IDYIDNSSHEDVCFTIKMDPIKLKRAEEEGLEKVFKLKSTLTTTNMTLFDPKLKLQRYAS 1041
Query: 349 --EILYYFILHRKEVIKRRTIFELRKAREYAHILEGLTIALTNIDN 392
+IL F HR R + + K + I+ T + I N
Sbjct: 1042 ELDILKDFCFHRLNAYTDRKNYLISKLEKEKRIISNKTKFILAIIN 1087
Score = 64 (27.6 bits), Expect = 3.9e-12, Sum P(3) = 3.9e-12
Identities = 67/309 (21%), Positives = 126/309 (40%)
Query: 316 VLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRK------EV--IKRRTI 367
+++KL K+ ++ + +LA++NG+ + K+ + L+RK ++ +K+ I
Sbjct: 1064 LISKLEKEKRIISNKTKFILAIINGELVVNKKKKKILVEELYRKGYDPYKDIHKLKKEEI 1123
Query: 368 FE--LRKAREYAH----ILEGLTIALTNIDNFIQIIRST-STPQEAKNKIIESTWNLPDV 420
FE L A E I+ G+T+ N + I T +E +++ E L ++
Sbjct: 1124 FEQELLDAAENPEDNEEIIAGVTVKDYNYLLNMPIFSLTLEKVEELLSQLKEKEQEL-EI 1182
Query: 421 SKIIGFNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRL----TNMEQKKII 476
K I I K+ + Q N +L++ + K+ +++ ++KK +
Sbjct: 1183 LKSITVETMWLKDIEKVEEAIEFQRN--VELANREESNKFKVARKKIGAGFKKKKKKKKL 1240
Query: 477 NKYENVIKKVIDLTDILSNSKRXXXXXXXXXXXXKNKYGSHKKNIRR--SEIILNAINPS 534
+ D ++ + NS N S +K IR+ S I ++ N
Sbjct: 1241 TSDDESEGDTSDSSEFMINSLNIKKNSKKTPNKKNNN--SVRKKIRKIDSGISVDDNNTQ 1298
Query: 535 TEDLIASQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLF-IANTHD 593
T LI S + I SN+ Y K+ G A + D IN++ +N HD
Sbjct: 1299 TPILINSNE--IDDSNISYSKT--------------GDNAYNSDDTPLINKIINTSNIHD 1342
Query: 594 YILCFSNYG 602
+N+G
Sbjct: 1343 VNTPIANHG 1351
Score = 54 (24.1 bits), Expect = 2.1e-13, Sum P(4) = 2.1e-13
Identities = 48/197 (24%), Positives = 87/197 (44%)
Query: 885 FHYLDSGALYRLVTLSAINNNI-QL-DNELELVILIKKLNYNFLGKEVYLNGVNVTTLIR 942
++YL + ++ L TL + + QL + E EL IL K + + + R
Sbjct: 1150 YNYLLNMPIFSL-TLEKVEELLSQLKEKEQELEIL-KSITVETMWLKDIEKVEEAIEFQR 1207
Query: 943 NEKVSNNASKIAKFKNIRKELFKIQVKFRKFPGLVADGRDMGTTVFPDAFLKIFLTADIK 1002
N +++N KFK RK++ K +K L +D G T F+ + +IK
Sbjct: 1208 NVELANREES-NKFKVARKKIGAGFKKKKKKKKLTSDDESEGDTSDSSEFM--INSLNIK 1264
Query: 1003 QRTKR----------RYK-QLMQKGFSV----SMSDLLINLIKRDIRDKTRNLSPLKCPE 1047
+ +K+ R K + + G SV + + +LIN +I D N+S K +
Sbjct: 1265 KNSKKTPNKKNNNSVRKKIRKIDSGISVDDNNTQTPILIN--SNEIDDS--NISYSKTGD 1320
Query: 1048 QAHLLNTSKMNINQVVN 1064
A+ + + + IN+++N
Sbjct: 1321 NAYNSDDTPL-INKIIN 1336
Score = 45 (20.9 bits), Expect = 2.1e-13, Sum P(4) = 2.1e-13
Identities = 10/42 (23%), Positives = 22/42 (52%)
Query: 1350 TNLTDYGAFVEIEKGIEGLVHISEMDWINKNVTPSKIVQLND 1391
T + ++G+ GI+ ++ IN N++P+ V +N+
Sbjct: 1345 TPIANHGSTSSNHNGIDQTPAHGGINSININISPNSTVNINE 1386
Score = 37 (18.1 bits), Expect = 1.3e-12, Sum P(4) = 1.3e-12
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 1137 IESLENGFGDTILSRDKAKRLASWL 1161
+E +NG +T SR+ KR S L
Sbjct: 1432 MEKGDNGAKETARSRNTPKRKRSTL 1456
Score = 37 (18.1 bits), Expect = 6.1e-12, Sum P(3) = 6.1e-12
Identities = 23/89 (25%), Positives = 42/89 (47%)
Query: 968 VKFRKFPGLVADGRDMGTTVFPDAFLKIFLTADIKQRTKRRYKQLMQKGFSVSMSDLLIN 1027
V +F G+ ++GT A L F +A K++ + + + K ++ D N
Sbjct: 1382 VNINEFSGIKNKLLELGTLYLVYAHLSQFCSATKKKKPRLTLAETI-KMKNMEKGD---N 1437
Query: 1028 LIKRDIRDKTRNLSPLKCPEQAHLLNTSK 1056
K R +RN +P + +++ LL+TSK
Sbjct: 1438 GAKETAR--SRN-TPKR--KRSTLLDTSK 1461
>UNIPROTKB|E9PTY5 [details] [associations]
symbol:Top2a "DNA topoisomerase 2" species:10116 "Rattus
norvegicus" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 IPI:IPI00193944 Ensembl:ENSRNOT00000044306
ArrayExpress:E9PTY5 Uniprot:E9PTY5
Length = 1526
Score = 213 (80.0 bits), Expect = 9.9e-13, Sum P(3) = 9.9e-13
Identities = 69/226 (30%), Positives = 108/226 (47%)
Query: 32 RALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGET--MGKYHPHGDVSIYDAL 89
R++P + DGLKP R+VLF + N+ + VK A++ G M YH HG++S+ +
Sbjct: 712 RSIPSMVDGLKPGQRKVLFTCFKRND---KREVKVAQLAGSVAEMSSYH-HGEMSLMMTI 767
Query: 90 VRMAQSF--SLRCTLVDGQGNFGSI--DGDSAAAMRYTECRLNKISNELLIDLDKETIDF 145
+ +AQ+F S L+ G FG+ G +A+ RY L+ ++ L D T+ F
Sbjct: 768 INLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLLFPSKDDHTLRF 827
Query: 146 ISNYDGKEK-EPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGVLYVLHNPECS 204
+ YD ++ EP IP +LING+ GI G + IP ++ EV++ + +L E
Sbjct: 828 L--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRLLDGEE-- 883
Query: 205 INDLIKIIPAPDFPTAGIIYG-LSSVHDGYYTGKGRVIIRAKTHIE 249
P P P+ G + + Y G V I T IE
Sbjct: 884 --------PLPMLPSYKNYKGTIEELASNQYVINGEVAILNSTTIE 921
Score = 64 (27.6 bits), Expect = 9.9e-13, Sum P(3) = 9.9e-13
Identities = 24/87 (27%), Positives = 41/87 (47%)
Query: 255 NRTAIIIDELPY----QVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVIELKRN 310
N T I I ELP Q K+ +LE + EK I++ R+ + ++ VI++
Sbjct: 916 NSTTIEITELPIRTWTQTYKEQVLEPMLNGT-EKTPPLITDYREYHTDTTVKFVIKMTEE 974
Query: 311 EIPEIVLNKLYKQTQLQNTFGMNMLAL 337
++ E L+K +LQ + N + L
Sbjct: 975 KLAEAERVGLHKVFKLQTSLTCNSMVL 1001
Score = 45 (20.9 bits), Expect = 8.3e-11, Sum P(3) = 8.3e-11
Identities = 21/115 (18%), Positives = 49/115 (42%)
Query: 379 ILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIGFNKKNYNTISKIN 438
IL TI +T + IR+ + Q K +++E N + + + + + Y+T + +
Sbjct: 914 ILNSTTIEITELP-----IRTWT--QTYKEQVLEPMLNGTEKTPPLITDYREYHTDTTVK 966
Query: 439 NISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVIDLTDIL 493
+ K+ + + + ++ K+ N ++ + +KK + DIL
Sbjct: 967 FVIKMTEEKLAEAERVGLHKVFKLQTSLTCN---SMVLFDHVGCLKKYDTVLDIL 1018
Score = 44 (20.5 bits), Expect = 9.9e-13, Sum P(3) = 9.9e-13
Identities = 22/86 (25%), Positives = 41/86 (47%)
Query: 1148 ILSRDKAKRLASWLSLEKAMESGEIITGTINGK-VKGGLTVLTNGLKAFLPGSL---VDI 1203
+L KR+ +++E E+ + I I + V+G T +G + PG L ++
Sbjct: 1208 VLPSPVGKRVIPQVTMEMRAEAEKKIRRKIKSENVEG--TPAEDGAE---PGGLRQRLEK 1262
Query: 1204 RPVKDTTPFEGKTMDFKVIKLDRKRN 1229
R ++ + T+ FK IK +K+N
Sbjct: 1263 RQKREPGIAKQTTLPFKPIKKGKKKN 1288
>ZFIN|ZDB-GENE-041008-136 [details] [associations]
symbol:top2b "topoisomerase (DNA) II beta"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;ISS;IBA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0006259 "DNA metabolic
process" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA;ISS;IBA] [GO:0005634 "nucleus" evidence=IEA;ISS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=ISS] [GO:0030261
"chromosome condensation" evidence=ISS] [GO:0008094 "DNA-dependent
ATPase activity" evidence=ISS] [GO:0007059 "chromosome segregation"
evidence=ISS;IBA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IBA] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IBA] [GO:0071778 "WINAC complex"
evidence=IBA] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0005080 "protein kinase C binding" evidence=IBA] [GO:0009295
"nucleoid" evidence=IBA] [GO:0003682 "chromatin binding"
evidence=IBA] [GO:0006312 "mitotic recombination" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0042826
"histone deacetylase binding" evidence=IBA] [GO:0000819 "sister
chromatid segregation" evidence=IBA] [GO:0010842 "retina layer
formation" evidence=IMP] [GO:0031290 "retinal ganglion cell axon
guidance" evidence=IMP] [GO:0007412 "axon target recognition"
evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016853 "isomerase activity" evidence=IEA] [GO:0003916 "DNA
topoisomerase activity" evidence=IEA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 ZFIN:ZDB-GENE-041008-136
GO:GO:0005524 GO:GO:0005080 GO:GO:0003682 GO:GO:0006261
GO:GO:0010842 Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0042826
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 GO:GO:0071778 GO:GO:0007412
GO:GO:0031290 GO:GO:0070683 GO:GO:0000712 GO:GO:0000795
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 KO:K03164
HOGENOM:HOG000216693 HOVERGEN:HBG052998
GeneTree:ENSGT00390000016222 CTD:7155 EMBL:BX927238 EMBL:CR391921
IPI:IPI00495305 RefSeq:NP_001038656.1 UniGene:Dr.105756 SMR:Q1LUT2
STRING:Q1LUT2 Ensembl:ENSDART00000130695 GeneID:569877
KEGG:dre:569877 InParanoid:Q1LUT2 OMA:PITKAAP NextBio:20889886
Uniprot:Q1LUT2
Length = 1618
Score = 213 (80.0 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 130/526 (24%), Positives = 229/526 (43%)
Query: 32 RALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGET--MGKYHPHGDVSIYDAL 89
R++P + DGLKP R+VLF + N+ + VK A++ G M YH HG+ ++ +
Sbjct: 733 RSIPSLVDGLKPGQRKVLFTCVKRND---KREVKVAQLAGSVAEMSAYH-HGEQALMMTI 788
Query: 90 VRMAQSF--SLRCTLVDGQGNFGS-IDGDS-AAAMRYTECRLNKISNELLIDLDKETIDF 145
V +AQ+F S ++ G FG+ I+G AA+ RY L+ ++ L +D + F
Sbjct: 789 VNLAQNFVGSNNVNILQPLGQFGTRINGGKDAASPRYIFTMLSPLAKLLFPAVDSSLLKF 848
Query: 146 ISNYDGKEK-EPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGVLYVLHNPECS 204
+ YD +K EP IP +L+NG+ GI G A IP ++ E+++ + +L++
Sbjct: 849 L--YDDNQKVEPEWYIPIIPMVLVNGAEGIGTGWACKIPNYDPREIVNNINRMLNH---- 902
Query: 205 INDLIKIIPA-PDFPTAGIIYGLSSVHDGYYTGKGRVIIRAKTHIEEFNRENRTAIIIDE 263
D + ++P+ +F G I+ L Y G V + K IE RT
Sbjct: 903 -QDPLPMLPSYKNFK--GTIHELGQ---NQYLVSGEVSVLDKNTIEISELPVRTWT---- 952
Query: 264 LPYQVNKKSLLEKISQLV-KEKKL--ECISNLRDESDKSGMRIVIELKRNEIPEIVLNKL 320
Q K+S+LE + Q K L + D + K +R+ E K + L+K+
Sbjct: 953 ---QAYKESVLEPMLQGTDKTPPLISDYKEYHTDTTVKFVVRMTEE-KLAQAEAAGLHKV 1008
Query: 321 YKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFI---LHRKEVIKRRTIFEL------- 370
+K M + + + +++EIL F LH ++ K + L
Sbjct: 1009 FKLQSSLTCNSMVLFDHMGCMKRYESVQEILKEFFELRLHYYKLRKDWLVGSLGAESAKL 1068
Query: 371 -RKAREYAHILEG-LTIALTNIDNFIQII--RS-TSTPQEAKNKIIESTWNLPDVSKIIG 425
+AR +EG L+I + + I+++ R S P A NK E + D
Sbjct: 1069 SNQARFVLEKIEGKLSIENKSKRDLIRMLVQRGYESDPVAAWNKAQEKSLEEEDGGGNDS 1128
Query: 426 FNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKM-PLQR--LTNMEQKKIINKYENV 482
+ + + S N + + N ++ L+ + +E+LK L++ L ++ K N +
Sbjct: 1129 DSSVDSGSFSG-PNFNYILNMPLWCLTKEKVEELLKQRDLKKAELNELQSKTSENLWRED 1187
Query: 483 IKKVIDLTDILSNSKRXXXXXXXXXXXXKNKYGSHK-KNIRRSEII 527
+ I+ D + ++ K K G K K ++ E +
Sbjct: 1188 LAVFIEELDRVEEQEKESVNLGKAVKLVKGKVGKPKVKKMQLEETL 1233
>UNIPROTKB|F1M7A0 [details] [associations]
symbol:Top2a "DNA topoisomerase 2" species:10116 "Rattus
norvegicus" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0007059 GO:GO:0005654
GO:GO:0005730 GO:GO:0005814 GO:GO:0008144 GO:GO:0045944
GO:GO:0003682 GO:GO:0040016 GO:GO:0006974 GO:GO:0043065
GO:GO:0030263 Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0000793
GO:GO:0006266 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000228 GO:GO:0009330 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 GO:GO:0045870 GeneTree:ENSGT00390000016222
IPI:IPI00562522 Ensembl:ENSRNOT00000050725 ArrayExpress:F1M7A0
Uniprot:F1M7A0
Length = 1528
Score = 213 (80.0 bits), Expect = 2.0e-12, Sum P(3) = 2.0e-12
Identities = 69/226 (30%), Positives = 108/226 (47%)
Query: 32 RALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGET--MGKYHPHGDVSIYDAL 89
R++P + DGLKP R+VLF + N+ + VK A++ G M YH HG++S+ +
Sbjct: 712 RSIPSMVDGLKPGQRKVLFTCFKRND---KREVKVAQLAGSVAEMSSYH-HGEMSLMMTI 767
Query: 90 VRMAQSF--SLRCTLVDGQGNFGSI--DGDSAAAMRYTECRLNKISNELLIDLDKETIDF 145
+ +AQ+F S L+ G FG+ G +A+ RY L+ ++ L D T+ F
Sbjct: 768 INLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLLFPSKDDHTLRF 827
Query: 146 ISNYDGKEK-EPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGVLYVLHNPECS 204
+ YD ++ EP IP +LING+ GI G + IP ++ EV++ + +L E
Sbjct: 828 L--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRLLDGEE-- 883
Query: 205 INDLIKIIPAPDFPTAGIIYG-LSSVHDGYYTGKGRVIIRAKTHIE 249
P P P+ G + + Y G V I T IE
Sbjct: 884 --------PLPMLPSYKNYKGTIEELASNQYVINGEVAILNSTTIE 921
Score = 64 (27.6 bits), Expect = 2.0e-12, Sum P(3) = 2.0e-12
Identities = 24/87 (27%), Positives = 41/87 (47%)
Query: 255 NRTAIIIDELPY----QVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVIELKRN 310
N T I I ELP Q K+ +LE + EK I++ R+ + ++ VI++
Sbjct: 916 NSTTIEITELPIRTWTQTYKEQVLEPMLNGT-EKTPPLITDYREYHTDTTVKFVIKMTEE 974
Query: 311 EIPEIVLNKLYKQTQLQNTFGMNMLAL 337
++ E L+K +LQ + N + L
Sbjct: 975 KLAEAERVGLHKVFKLQTSLTCNSMVL 1001
Score = 45 (20.9 bits), Expect = 1.7e-10, Sum P(3) = 1.7e-10
Identities = 21/115 (18%), Positives = 49/115 (42%)
Query: 379 ILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIGFNKKNYNTISKIN 438
IL TI +T + IR+ + Q K +++E N + + + + + Y+T + +
Sbjct: 914 ILNSTTIEITELP-----IRTWT--QTYKEQVLEPMLNGTEKTPPLITDYREYHTDTTVK 966
Query: 439 NISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVIDLTDIL 493
+ K+ + + + ++ K+ N ++ + +KK + DIL
Sbjct: 967 FVIKMTEEKLAEAERVGLHKVFKLQTSLTCN---SMVLFDHVGCLKKYDTVLDIL 1018
Score = 41 (19.5 bits), Expect = 2.0e-12, Sum P(3) = 2.0e-12
Identities = 23/88 (26%), Positives = 42/88 (47%)
Query: 1148 ILSRDKAKRLASWLSLEKAMESGEIITGTINGK-VKGGLTVLTNGLKAFLPGSL---VDI 1203
+L KR+ +++E E+ + I I + V+G T +G + PG L ++
Sbjct: 1208 VLPSPVGKRVIPQVTMEMRAEAEKKIRRKIKSENVEG--TPAEDGAE---PGGLRQRLEK 1262
Query: 1204 RPVKD--TTPFEGKTMDFKVIKLDRKRN 1229
R ++ T + T+ FK IK +K+N
Sbjct: 1263 RQKREPGTRAKKQTTLPFKPIKKGKKKN 1290
Score = 37 (18.1 bits), Expect = 5.1e-12, Sum P(3) = 5.1e-12
Identities = 17/73 (23%), Positives = 33/73 (45%)
Query: 710 GKAVRFNENSVRAMGRSA--RGVIGMRLEKKQKVIALLVSNNQKQSVLT-ATENGYGKRT 766
GK + +E +G+ + + MR E ++K+ + S N + + E G G R
Sbjct: 1200 GKKAQISEVLPSPVGKRVIPQVTMEMRAEAEKKIRRKIKSENVEGTPAEDGAEPG-GLRQ 1258
Query: 767 LIKEYTKHNRGTK 779
+++ K GT+
Sbjct: 1259 RLEKRQKREPGTR 1271
>UNIPROTKB|F1NR58 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2" species:9031 "Gallus
gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003918
"DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 GeneTree:ENSGT00390000016222 IPI:IPI00819818
EMBL:AADN02001127 Ensembl:ENSGALT00000037716 ArrayExpress:F1NR58
Uniprot:F1NR58
Length = 1627
Score = 204 (76.9 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 56/174 (32%), Positives = 92/174 (52%)
Query: 32 RALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGET--MGKYHPHGDVSIYDAL 89
R++P + DGLKP R+VLF + N+ + VK A++ G M YH HG+ ++ +
Sbjct: 739 RSIPSLVDGLKPGQRKVLFTCFKRND---KREVKVAQLAGSVAEMSAYH-HGEQALMMTI 794
Query: 90 VRMAQSF--SLRCTLVDGQGNFGSI--DGDSAAAMRYTECRLNKISNELLIDLDKETIDF 145
V +AQ+F S L+ G FG+ G AA+ RY L+ ++ L +D + F
Sbjct: 795 VNLAQNFVGSNNVNLLQPIGQFGTRLHGGKDAASPRYIFTMLSPLARLLFPSVDDNLLKF 854
Query: 146 ISNYDGKEK-EPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGVLYVL 198
+ YD ++ EP IP +L+NG+ GI G A +P ++ E+++ V +L
Sbjct: 855 L--YDDNQRVEPEWYIPIIPMVLVNGAEGIGTGWACKLPNYDTREIVNNVRRML 906
Score = 63 (27.2 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 39/153 (25%), Positives = 68/153 (44%)
Query: 255 NRTAIIIDELPY----QVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVIELKRN 310
+R + I ELP QV K+ +LE + EK IS+ ++ + ++ V+++
Sbjct: 943 DRNTVEITELPVRTWTQVYKEQVLEPMLNGT-EKTPALISDYKEYHTDTTVKFVVKMTEE 1001
Query: 311 EIPEIVLNKLYKQTQLQNTFGMNMLALVNGQ---PKLLNLKEILYYFI---LH----RKE 360
++ + L+K +LQ + N + L + K +++IL F LH RKE
Sbjct: 1002 KLAQAEAAGLHKVFKLQTSLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLHYYSLRKE 1061
Query: 361 VIKRRTIFELRKAREYAH-ILEGLTIALTNIDN 392
+ E K A ILE + +T I+N
Sbjct: 1062 WLVGMLGAESTKLNNQARFILEKIQGKIT-IEN 1093
Score = 48 (22.0 bits), Expect = 8.2e-11, Sum P(2) = 8.2e-11
Identities = 39/222 (17%), Positives = 86/222 (38%)
Query: 364 RRTIFELRKAREYAHILEG-LTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSK 422
R TI EL + +Y ++ G + + N ++ T T Q K +++E N + +
Sbjct: 922 RGTIQELGQ-NQY--VVSGEIFVVDRNTVEITELPVRTWT-QVYKEQVLEPMLNGTEKTP 977
Query: 423 IIGFNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENV 482
+ + K Y+T + + + K+ + + ++ K+ N ++ +
Sbjct: 978 ALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTSLTCN---SMVLFDHMGC 1034
Query: 483 IKKVIDLTDILSNS-KRXXXXXXXXXXXXKNKYGSHKKNIR-RSEIILNAINPS-TEDLI 539
+KK + DIL G+ + ++ IL I T +
Sbjct: 1035 LKKYETVQDILKEFFDLRLHYYSLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENR 1094
Query: 540 ASQDMVITLSNLGYIKSQPISEYR-AQKRGGRGKKAMMTKDE 580
+ +D++ L GY +S P+ ++ AQ++ + D+
Sbjct: 1095 SKRDLIQMLVQRGY-ESDPVKAWKEAQEKAAEEEDPQNANDD 1135
Score = 37 (18.1 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 1088 VISAEVIGLDRNFVII 1103
V+S E+ +DRN V I
Sbjct: 934 VVSGEIFVVDRNTVEI 949
>UNIPROTKB|O42131 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2-beta" species:9031
"Gallus gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IBA] [GO:0000795 "synaptonemal complex"
evidence=IBA] [GO:0000819 "sister chromatid segregation"
evidence=IBA] [GO:0003682 "chromatin binding" evidence=IBA]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=ISS;IBA] [GO:0005080 "protein kinase C binding"
evidence=IBA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IBA] [GO:0006265 "DNA topological change"
evidence=ISS;IBA] [GO:0006312 "mitotic recombination" evidence=IBA]
[GO:0007059 "chromosome segregation" evidence=IBA] [GO:0009295
"nucleoid" evidence=IBA] [GO:0042826 "histone deacetylase binding"
evidence=IBA] [GO:0071778 "WINAC complex" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR012542 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005080 GO:GO:0005654 GO:GO:0003682
GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0042826
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 GO:GO:0071778 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
HOGENOM:HOG000216693 HOVERGEN:HBG052998 EMBL:AB007446
IPI:IPI00819818 RefSeq:NP_990413.1 UniGene:Gga.30963
ProteinModelPortal:O42131 SMR:O42131 STRING:O42131 PRIDE:O42131
GeneID:395966 KEGG:gga:395966 CTD:7155 NextBio:20816031
Uniprot:O42131
Length = 1627
Score = 204 (76.9 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 56/174 (32%), Positives = 92/174 (52%)
Query: 32 RALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGET--MGKYHPHGDVSIYDAL 89
R++P + DGLKP R+VLF + N+ + VK A++ G M YH HG+ ++ +
Sbjct: 739 RSIPSLVDGLKPGQRKVLFTCFKRND---KREVKVAQLAGSVAEMSAYH-HGEQALMMTI 794
Query: 90 VRMAQSF--SLRCTLVDGQGNFGSI--DGDSAAAMRYTECRLNKISNELLIDLDKETIDF 145
V +AQ+F S L+ G FG+ G AA+ RY L+ ++ L +D + F
Sbjct: 795 VNLAQNFVGSNNVNLLQPIGQFGTRLHGGKDAASPRYIFTMLSPLARLLFPSVDDNLLKF 854
Query: 146 ISNYDGKEK-EPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGVLYVL 198
+ YD ++ EP IP +L+NG+ GI G A +P ++ E+++ V +L
Sbjct: 855 L--YDDNQRVEPEWYIPIIPMVLVNGAEGIGTGWACKLPNYDTREIVNNVRRML 906
Score = 63 (27.2 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 39/153 (25%), Positives = 68/153 (44%)
Query: 255 NRTAIIIDELPY----QVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVIELKRN 310
+R + I ELP QV K+ +LE + EK IS+ ++ + ++ V+++
Sbjct: 943 DRNTVEITELPVRTWTQVYKEQVLEPMLNGT-EKTPALISDYKEYHTDTTVKFVVKMTEE 1001
Query: 311 EIPEIVLNKLYKQTQLQNTFGMNMLALVNGQ---PKLLNLKEILYYFI---LH----RKE 360
++ + L+K +LQ + N + L + K +++IL F LH RKE
Sbjct: 1002 KLAQAEAAGLHKVFKLQTSLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLHYYSLRKE 1061
Query: 361 VIKRRTIFELRKAREYAH-ILEGLTIALTNIDN 392
+ E K A ILE + +T I+N
Sbjct: 1062 WLVGMLGAESTKLNNQARFILEKIQGKIT-IEN 1093
Score = 48 (22.0 bits), Expect = 8.2e-11, Sum P(2) = 8.2e-11
Identities = 39/222 (17%), Positives = 86/222 (38%)
Query: 364 RRTIFELRKAREYAHILEG-LTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSK 422
R TI EL + +Y ++ G + + N ++ T T Q K +++E N + +
Sbjct: 922 RGTIQELGQ-NQY--VVSGEIFVVDRNTVEITELPVRTWT-QVYKEQVLEPMLNGTEKTP 977
Query: 423 IIGFNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENV 482
+ + K Y+T + + + K+ + + ++ K+ N ++ +
Sbjct: 978 ALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTSLTCN---SMVLFDHMGC 1034
Query: 483 IKKVIDLTDILSNS-KRXXXXXXXXXXXXKNKYGSHKKNIR-RSEIILNAINPS-TEDLI 539
+KK + DIL G+ + ++ IL I T +
Sbjct: 1035 LKKYETVQDILKEFFDLRLHYYSLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENR 1094
Query: 540 ASQDMVITLSNLGYIKSQPISEYR-AQKRGGRGKKAMMTKDE 580
+ +D++ L GY +S P+ ++ AQ++ + D+
Sbjct: 1095 SKRDLIQMLVQRGY-ESDPVKAWKEAQEKAAEEEDPQNANDD 1135
Score = 37 (18.1 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 1088 VISAEVIGLDRNFVII 1103
V+S E+ +DRN V I
Sbjct: 934 VVSGEIFVVDRNTVEI 949
>UNIPROTKB|E1BZ19 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2" species:9031 "Gallus
gallus" [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0001764 "neuron
migration" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0005080 "protein kinase C binding" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0007409 "axonogenesis" evidence=IEA] [GO:0008022
"protein C-terminus binding" evidence=IEA] [GO:0030900 "forebrain
development" evidence=IEA] [GO:0042826 "histone deacetylase
binding" evidence=IEA] [GO:0046982 "protein heterodimerization
activity" evidence=IEA] [GO:0071778 "WINAC complex" evidence=IEA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR012542 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005829 GO:GO:0005524 GO:GO:0005654 GO:GO:0003682
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000792 GO:GO:0071778
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 GeneTree:ENSGT00390000016222
OMA:AKEYFQD EMBL:AADN02001127 IPI:IPI00599764
ProteinModelPortal:E1BZ19 Ensembl:ENSGALT00000018432
ArrayExpress:E1BZ19 Uniprot:E1BZ19
Length = 1629
Score = 204 (76.9 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 56/174 (32%), Positives = 92/174 (52%)
Query: 32 RALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGET--MGKYHPHGDVSIYDAL 89
R++P + DGLKP R+VLF + N+ + VK A++ G M YH HG+ ++ +
Sbjct: 741 RSIPSLVDGLKPGQRKVLFTCFKRND---KREVKVAQLAGSVAEMSAYH-HGEQALMMTI 796
Query: 90 VRMAQSF--SLRCTLVDGQGNFGSI--DGDSAAAMRYTECRLNKISNELLIDLDKETIDF 145
V +AQ+F S L+ G FG+ G AA+ RY L+ ++ L +D + F
Sbjct: 797 VNLAQNFVGSNNVNLLQPIGQFGTRLHGGKDAASPRYIFTMLSPLARLLFPSVDDNLLKF 856
Query: 146 ISNYDGKEK-EPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGVLYVL 198
+ YD ++ EP IP +L+NG+ GI G A +P ++ E+++ V +L
Sbjct: 857 L--YDDNQRVEPEWYIPIIPMVLVNGAEGIGTGWACKLPNYDTREIVNNVRRML 908
Score = 63 (27.2 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 39/153 (25%), Positives = 68/153 (44%)
Query: 255 NRTAIIIDELPY----QVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVIELKRN 310
+R + I ELP QV K+ +LE + EK IS+ ++ + ++ V+++
Sbjct: 945 DRNTVEITELPVRTWTQVYKEQVLEPMLNGT-EKTPALISDYKEYHTDTTVKFVVKMTEE 1003
Query: 311 EIPEIVLNKLYKQTQLQNTFGMNMLALVNGQ---PKLLNLKEILYYFI---LH----RKE 360
++ + L+K +LQ + N + L + K +++IL F LH RKE
Sbjct: 1004 KLAQAEAAGLHKVFKLQTSLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLHYYSLRKE 1063
Query: 361 VIKRRTIFELRKAREYAH-ILEGLTIALTNIDN 392
+ E K A ILE + +T I+N
Sbjct: 1064 WLVGMLGAESTKLNNQARFILEKIQGKIT-IEN 1095
Score = 48 (22.0 bits), Expect = 8.2e-11, Sum P(2) = 8.2e-11
Identities = 39/222 (17%), Positives = 86/222 (38%)
Query: 364 RRTIFELRKAREYAHILEG-LTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSK 422
R TI EL + +Y ++ G + + N ++ T T Q K +++E N + +
Sbjct: 924 RGTIQELGQ-NQY--VVSGEIFVVDRNTVEITELPVRTWT-QVYKEQVLEPMLNGTEKTP 979
Query: 423 IIGFNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENV 482
+ + K Y+T + + + K+ + + ++ K+ N ++ +
Sbjct: 980 ALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTSLTCN---SMVLFDHMGC 1036
Query: 483 IKKVIDLTDILSNS-KRXXXXXXXXXXXXKNKYGSHKKNIR-RSEIILNAINPS-TEDLI 539
+KK + DIL G+ + ++ IL I T +
Sbjct: 1037 LKKYETVQDILKEFFDLRLHYYSLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENR 1096
Query: 540 ASQDMVITLSNLGYIKSQPISEYR-AQKRGGRGKKAMMTKDE 580
+ +D++ L GY +S P+ ++ AQ++ + D+
Sbjct: 1097 SKRDLIQMLVQRGY-ESDPVKAWKEAQEKAAEEEDPQNANDD 1137
Score = 37 (18.1 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 1088 VISAEVIGLDRNFVII 1103
V+S E+ +DRN V I
Sbjct: 936 VVSGEIFVVDRNTVEI 951
>UNIPROTKB|Q0DYE1 [details] [associations]
symbol:Os02g0699700 "DNA topoisomerase 2" species:39947
"Oryza sativa Japonica Group" [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0006261 Gene3D:3.30.565.10 SUPFAM:SSF55874
EMBL:AP008208 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:3.40.50.670 KO:K03164
RefSeq:NP_001047833.1 UniGene:Os.34202 ProteinModelPortal:Q0DYE1
STRING:Q0DYE1 PRIDE:Q0DYE1 GeneID:4330426 KEGG:osa:4330426
Gramene:Q0DYE1 Uniprot:Q0DYE1
Length = 956
Score = 206 (77.6 bits), Expect = 2.9e-12, P = 2.9e-12
Identities = 55/186 (29%), Positives = 97/186 (52%)
Query: 19 KSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGETMGKYH 78
K + ++M+ ++ R++P + DGLKP R++LF + N + + + V E YH
Sbjct: 690 KELIQFSMADLL-RSIPSMVDGLKPGQRKILFCSFKRNLVKEIKVAQFSGYVSEHSA-YH 747
Query: 79 PHGDVSIYDALVRMAQSF--SLRCTLVDGQGNFGSID--GDSAAAMRYTECRLNKISNEL 134
HG+ S+ + MAQ F S L+ G FG+ D G AA+ RY L+ I+ +
Sbjct: 748 -HGEQSLASTITGMAQDFVGSNNINLLQPNGQFGTRDQGGKDAASARYIFTLLSPITRSI 806
Query: 135 LIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGV 194
D ++++ DG+ EP+ +P +L+NGS GI G +T IP +N +++ +
Sbjct: 807 FPKDDDILLNYLDE-DGQSIEPTWYVPILPMVLVNGSEGIGTGWSTFIPNYNPRDIVANL 865
Query: 195 LYVLHN 200
+L++
Sbjct: 866 RRLLND 871
>POMBASE|SPBC1A4.03c [details] [associations]
symbol:top2 "DNA topoisomerase II" species:4896
"Schizosaccharomyces pombe" [GO:0000228 "nuclear chromosome"
evidence=NAS] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IMP] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IGI;IDA;IMP] [GO:0005524 "ATP
binding" evidence=IC] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006265 "DNA topological change" evidence=IGI;IDA;IMP]
[GO:0006271 "DNA strand elongation involved in DNA replication"
evidence=ISO] [GO:0006325 "chromatin organization" evidence=IGI]
[GO:0006406 "mRNA export from nucleus" evidence=IMP] [GO:0007076
"mitotic chromosome condensation" evidence=IMP] [GO:0042790
"transcription of nuclear large rRNA transcript from RNA polymerase
I promoter" evidence=IGI] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
SMART:SM00434 PomBase:SPBC1A4.03c Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0006406
Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0007076 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006325 GO:GO:0000228
GO:GO:0006271 GO:GO:0000712 GO:GO:0042790 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
HOGENOM:HOG000216693 OMA:AKEYFQD EMBL:X04326 PIR:T39851
RefSeq:NP_595805.1 ProteinModelPortal:P08096 SMR:P08096
STRING:P08096 EnsemblFungi:SPBC1A4.03c.1 GeneID:2540541
KEGG:spo:SPBC1A4.03c OrthoDB:EOG4XPTPZ NextBio:20801667
Uniprot:P08096
Length = 1485
Score = 205 (77.2 bits), Expect = 3.8e-12, Sum P(2) = 3.8e-12
Identities = 58/200 (29%), Positives = 105/200 (52%)
Query: 11 ILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCAR-V 69
I +++ + + + ++M+ + R++P V DGLKP R+V++ + N + + A V
Sbjct: 723 IPIDDFINRELIQFSMADNI-RSIPSVVDGLKPGQRKVVYYCFKRNLVHETKVSRLAGYV 781
Query: 70 VGETMGKYHPHGDVSIYDALVRMAQSF--SLRCTLVDGQGNFG--SIDGDSAAAMRYTEC 125
ET YH HG+VS+ +V +AQ+F S L+ G FG S G +A+A RY
Sbjct: 782 ASETA--YH-HGEVSMEQTIVNLAQNFVGSNNINLLMPNGQFGTRSEGGKNASASRYLNT 838
Query: 126 RLNKISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPH 185
L+ ++ L D + +++ N +G+ EP +P +L+NG+ GI G +T IP +
Sbjct: 839 ALSPLARVLFNSNDDQLLNY-QNDEGQWIEPEYYVPILPMVLVNGAEGIGTGWSTFIPNY 897
Query: 186 NLTEVIDGVLYVLHNPECSI 205
N ++ + ++L+ I
Sbjct: 898 NPKDITANLRHMLNGEPLEI 917
Score = 59 (25.8 bits), Expect = 3.8e-12, Sum P(2) = 3.8e-12
Identities = 55/247 (22%), Positives = 106/247 (42%)
Query: 252 NRENRTAIIIDELPYQVNKKSLLEKISQ-LVKEKKL-ECISNLRDESDKSGMRIVIELKR 309
N+ + I ELP + + + E + LV +K+ + I + + + + L
Sbjct: 944 NQIGENKVEITELPIRFWTQDMKEYLEAGLVGTEKIRKFIVDYESHHGEGNVHFNVTLTE 1003
Query: 310 NEIPEIVLNKLYKQTQLQNTFGM-NMLAL-VNGQPKLLN-LKEILYYFILHRKEVIKRRT 366
+ E + L + +L T NM+A +G+ K + +++IL F EV + RT
Sbjct: 1004 AGMKEALNESLEVKFKLSRTQATSNMIAFDASGRIKKYDSVEDILTEFY----EV-RLRT 1058
Query: 367 IFELRKAREYAHILEGLTIALTNIDNFIQII---RSTSTPQEAKNKIIE-STWNLPDVSK 422
++ RK + LE +N FI +I + ++ K+ I+E +SK
Sbjct: 1059 -YQRRK-EHMVNELEKRFDRFSNQARFIHMIIEGELVVSKKKKKDLIVELKEKKFQPISK 1116
Query: 423 IIGFNKKNYNTISKINNI--SKLQNNDMYKLSDIQAQE-ILKMPLQRLTNMEQKKIINKY 479
KK + ++ N + Q+ D+ + D A +L MPL LT +++ K
Sbjct: 1117 ----PKKGHLVDLEVENALAEEEQSGDVSQDEDSDAYNYLLSMPLWSLTYERYVELLKKK 1172
Query: 480 ENVIKKV 486
+ V+ ++
Sbjct: 1173 DEVMAEL 1179
Score = 50 (22.7 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 233 YYTGKGRVIIRAKTHIEEFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECIS 290
Y K ++ + + F+ + R +I E V+KK + I +L KEKK + IS
Sbjct: 1059 YQRRKEHMVNELEKRFDRFSNQARFIHMIIEGELVVSKKKKKDLIVEL-KEKKFQPIS 1115
Score = 39 (18.8 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 26/133 (19%), Positives = 53/133 (39%)
Query: 936 NVTTLIRNEKVSNNASKIAKFKNIRKELFKIQVKFRKFPGLVA--DGRDMGTTVFPDAFL 993
NVT K + N S KFK R + + F G + D + T F + L
Sbjct: 998 NVTLTEAGMKEALNESLEVKFKLSRTQATSNMIAFDA-SGRIKKYDSVEDILTEFYEVRL 1056
Query: 994 KIFLTAD--IKQRTKRRYKQLMQKGFSVSM---SDLLINLIKRD---IRDKTRNLSPLKC 1045
+ + + ++R+ + + + M +L+++ K+ + K + P+
Sbjct: 1057 RTYQRRKEHMVNELEKRFDRFSNQARFIHMIIEGELVVSKKKKKDLIVELKEKKFQPISK 1116
Query: 1046 PEQAHLLNTSKMN 1058
P++ HL++ N
Sbjct: 1117 PKKGHLVDLEVEN 1129
>UNIPROTKB|E9PCY5 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2" species:9606 "Homo
sapiens" [GO:0005694 "chromosome" evidence=IEA] [GO:0006265 "DNA
topological change" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0001764 "neuron
migration" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007409 "axonogenesis" evidence=IEA] [GO:0030900 "forebrain
development" evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
SMART:SM00434 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0005634 GO:GO:0001764 GO:GO:0005694 GO:GO:0030900
GO:GO:0007409 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 HGNC:HGNC:11990 ChiTaRS:TOP2B EMBL:AC093416
IPI:IPI00925477 ProteinModelPortal:E9PCY5 SMR:E9PCY5
Ensembl:ENST00000424225 ArrayExpress:E9PCY5 Bgee:E9PCY5
Uniprot:E9PCY5
Length = 1150
Score = 199 (75.1 bits), Expect = 4.2e-12, Sum P(2) = 4.2e-12
Identities = 56/174 (32%), Positives = 91/174 (52%)
Query: 32 RALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGET--MGKYHPHGDVSIYDAL 89
R++P + DG KP R+VLF + N+ + VK A++ G M YH HG+ ++ +
Sbjct: 729 RSIPSLVDGFKPGQRKVLFTCFKRND---KREVKVAQLAGSVAEMSAYH-HGEQALMMTI 784
Query: 90 VRMAQSF--SLRCTLVDGQGNFGSI--DGDSAAAMRYTECRLNKISNELLIDLDKETIDF 145
V +AQ+F S L+ G FG+ G AA+ RY L+ ++ L +D + F
Sbjct: 785 VNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLKF 844
Query: 146 ISNYDGKEK-EPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGVLYVL 198
+ YD ++ EP IP +LING+ GI G A +P ++ E+++ V +L
Sbjct: 845 L--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRML 896
Score = 62 (26.9 bits), Expect = 4.2e-12, Sum P(2) = 4.2e-12
Identities = 21/87 (24%), Positives = 42/87 (48%)
Query: 255 NRTAIIIDELPY----QVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVIELKRN 310
+R + I ELP QV K+ +LE + +K IS+ ++ + ++ V+++
Sbjct: 933 DRNTVEITELPVRTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEE 991
Query: 311 EIPEIVLNKLYKQTQLQNTFGMNMLAL 337
++ + L+K +LQ T N + L
Sbjct: 992 KLAQAEAAGLHKVFKLQTTLTCNSMVL 1018
Score = 52 (23.4 bits), Expect = 4.6e-11, Sum P(2) = 4.6e-11
Identities = 33/181 (18%), Positives = 71/181 (39%)
Query: 404 QEAKNKIIESTWNLPDVSKIIGFNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMP 463
Q K +++E N D + + + K Y+T + + + K+ KL+ +A + K+
Sbjct: 949 QVYKEQVLEPMLNGTDKTPALISDYKEYHTDTTVKFVVKMTEE---KLAQAEAAGLHKVF 1005
Query: 464 LQRLTNMEQKKIINKYENVIKKVIDLTDILSNS-KRXXXXXXXXXXXXKNKYGSHKKNIR 522
+ T ++ + +KK + DIL G+ +
Sbjct: 1006 KLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSYYGLRKEWLVGMLGAESTKLN 1065
Query: 523 -RSEIILNAINPS-TEDLIASQDMVITLSNLGYIKSQPISEYR-AQKRGGRGKKAMMTKD 579
++ IL I T + + +D++ L GY +S P+ ++ AQ++ + D
Sbjct: 1066 NQARFILEKIQGKITIENRSKKDLIQMLVQRGY-ESDPVKAWKEAQEKAAEEDETQNQHD 1124
Query: 580 E 580
+
Sbjct: 1125 D 1125
>UNIPROTKB|F1Q2M4 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2" species:9615 "Canis
lupus familiaris" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 GeneTree:ENSGT00390000016222 EMBL:AAEX03006463
Ensembl:ENSCAFT00000025539 Uniprot:F1Q2M4
Length = 1533
Score = 224 (83.9 bits), Expect = 4.8e-12, Sum P(2) = 4.8e-12
Identities = 121/465 (26%), Positives = 204/465 (43%)
Query: 32 RALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGET--MGKYHPHGDVSIYDAL 89
R++P + DGLKP R+VLF + N+ + VK A++ G M YH HG++S+ +
Sbjct: 713 RSIPSMVDGLKPGQRKVLFTCFKRND---KREVKVAQLAGSVAEMSSYH-HGEMSLMMTI 768
Query: 90 VRMAQSF--SLRCTLVDGQGNFGSI--DGDSAAAMRYTECRLNKISNELLIDLDKETIDF 145
+ +AQ+F S L+ G FG+ G +A+ RY L+ ++ L D +T+ F
Sbjct: 769 INLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLLFPPKDDQTLKF 828
Query: 146 ISNYDGKEK-EPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGVLYVLHNPECS 204
+ YD ++ EP IP +LING+ GI G + IP ++ EV++ + ++ E
Sbjct: 829 L--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDIREVVNNIRRLMDGEE-- 884
Query: 205 INDLIKIIPAPDFPTAGIIYG-LSSVHDGYYTGKGRVIIRAKTHIEEFNRENRTAIIIDE 263
P P P+ G + + Y G V I T IE RT
Sbjct: 885 --------PLPMLPSYKNFRGTIEELAPNQYVISGEVAILNSTTIEISELPVRTWT--QT 934
Query: 264 LPYQVNKKSL--LEKISQLVKEKKLECISNLRDESDKSGMRIVIELKRNEIPEIVLNKLY 321
QV + L EK L+ + + E + D + K +++ E K E + L+K++
Sbjct: 935 YKEQVLEPMLNGTEKTPPLITDYR-EYHT---DTTVKFVVKMTEE-KLAEAERVGLHKVF 989
Query: 322 K-QTQLQNTFGMNMLALVNGQPKLLNLKEILY-YFILHRKEV-IKRRTIFELRKAREYAH 378
K QT L M + V K + +IL +F L K +++ + + A E A
Sbjct: 990 KLQTSLTCN-SMVLFDHVGCLKKYDTVLDILRDFFELRLKYYGLRKEWLLGMLGA-ESAK 1047
Query: 379 ILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIGFNKK--NYNTISK 436
+ L ID I I+ + +E +I+ ++ V +K + +
Sbjct: 1048 LNNQARFILEKIDGKIIIVEN-KPKKELIKVLIQRGYDSDPVKAWKEAQQKVPDEEENEE 1106
Query: 437 INNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYEN 481
+N ++ + +D + S +L MPL LT E+K + K N
Sbjct: 1107 SDNENEAEKSDSVRDSGPTFNYLLDMPLWYLTK-EKKDELCKLRN 1150
Score = 39 (18.8 bits), Expect = 4.8e-12, Sum P(2) = 4.8e-12
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 1216 TMDFKVIKLDRKRN 1229
T+ FK IK +KRN
Sbjct: 1280 TLPFKPIKKGKKRN 1293
>UNIPROTKB|A8JD08 [details] [associations]
symbol:TOP2 "DNA topoisomerase 2" species:3055
"Chlamydomonas reinhardtii" [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0006261
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
GO:GO:0070683 GO:GO:0000712 GO:GO:0000795 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 KO:K03164 EMBL:DS496159
RefSeq:XP_001700298.1 ProteinModelPortal:A8JD08 STRING:A8JD08
EnsemblPlants:EDO98265 GeneID:5725848 KEGG:cre:CHLREDRAFT_38019
ProtClustDB:PLN03128 BioCyc:CHLAMY:CHLREDRAFT_38019-MONOMER
Uniprot:A8JD08
Length = 1167
Score = 205 (77.2 bits), Expect = 4.8e-12, P = 4.8e-12
Identities = 52/164 (31%), Positives = 86/164 (52%)
Query: 32 RALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGETMGKYHPHGDVSIYDALVR 91
R++P + DGLKP R++L+A + N + + + V E YH HG+ S+ +V
Sbjct: 699 RSIPSMLDGLKPGQRKILYACFKRNLKKDIKVAQLSAYVAEHSA-YH-HGEGSLASTIVN 756
Query: 92 MAQSF--SLRCTLVDGQGNFGSI--DGDSAAAMRYTECRLNKISNELLIDLDKETIDFIS 147
+AQ F S L+ G FG+ G AA+ RY RL ++ L + D + + ++
Sbjct: 757 LAQDFVGSNNVNLLHPSGQFGTRLQGGKDAASARYIYTRLAALTRHLFNENDDQLLTYL- 815
Query: 148 NYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVI 191
N +G+ EP +P +LING+ GI G +T IP +N +++
Sbjct: 816 NEEGQSIEPEWYMPILPTVLINGADGIGTGWSTTIPNYNPRDIM 859
>DICTYBASE|DDB_G0270418 [details] [associations]
symbol:top2 "DNA topoisomerase II" species:44689
"Dictyostelium discoideum" [GO:0006265 "DNA topological change"
evidence=IEA;ISS;IBA] [GO:0006259 "DNA metabolic process"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;ISS;IBA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0009295 "nucleoid"
evidence=IBA] [GO:0044774 "mitotic DNA integrity checkpoint"
evidence=IBA] [GO:0007059 "chromosome segregation" evidence=IBA]
[GO:0006312 "mitotic recombination" evidence=IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0000819 "sister
chromatid segregation" evidence=IBA] [GO:0000795 "synaptonemal
complex" evidence=IBA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016853 "isomerase activity"
evidence=IEA] [GO:0003916 "DNA topoisomerase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 dictyBase:DDB_G0270418 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 EMBL:AAFI02000005
GenomeReviews:CM000150_GR GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
ProtClustDB:PTZ00108 OMA:ADNKQND RefSeq:XP_646786.1 HSSP:P11388
ProteinModelPortal:Q55BP5 SMR:Q55BP5 STRING:Q55BP5 PRIDE:Q55BP5
EnsemblProtists:DDB0231510 GeneID:8617759 KEGG:ddi:DDB_G0270418
Uniprot:Q55BP5
Length = 1521
Score = 208 (78.3 bits), Expect = 5.0e-12, Sum P(2) = 5.0e-12
Identities = 53/169 (31%), Positives = 91/169 (53%)
Query: 32 RALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGETM--GKYHPHGDVSIYDAL 89
R++P++ DGLK HR+ L++ + NL + +K A+++G YH HG+ S+Y +
Sbjct: 769 RSIPNIVDGLKTSHRKTLYSCFK-RNL--KKEIKVAQLIGYVSEHSAYH-HGEASLYSTI 824
Query: 90 VRMAQSF--SLRCTLVDGQGNFGS--IDGDSAAAMRYTECRLNKISNELLIDLDKETIDF 145
V MAQ F S L++ G++G+ G ++ RY RLN I+ + D +
Sbjct: 825 VGMAQEFVGSNNINLLNPAGSYGTRIAGGKDCSSARYIHTRLNDIARAVYHADDDPILSC 884
Query: 146 ISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGV 194
+ + DGK+ +P IP +L+NG GI G ++ IP +N ++I +
Sbjct: 885 VVD-DGKKVQPKFYIPVIPMILVNGCVGIGTGWSSTIPNYNPRDLIQNM 932
Score = 55 (24.4 bits), Expect = 5.0e-12, Sum P(2) = 5.0e-12
Identities = 49/222 (22%), Positives = 91/222 (40%)
Query: 283 EKKLEC-ISNLRDESDKSGMRIVIELKRNEIPEIVLNKLYKQTQLQNTFGMNMLAL-VNG 340
EK E + + + S +S + +I+ + + EI + K++K N NM+ G
Sbjct: 1046 EKVTEATVKSYTNYSSESTIHFIIDTIQ-PVDEINIEKVFKLVSTINE--TNMVVFDEEG 1102
Query: 341 QPKLLNLKEIL--YYFILHRKEVIKRRTIFELRKAREYAHILEG--LTIALTNIDNFIQI 396
+ + L ++F L K R+ R + EY+ + +A+ N + I
Sbjct: 1103 RIQRFATTTALQEHFFPLRIKHYQMRKDFLSERLSEEYSRLSNKARFILAVVNKELVISN 1162
Query: 397 IRSTSTPQEAK----NKIIESTWNLPDVSKIIGFNKKNYNTISKINN-ISKLQNNDMYKL 451
++ + K ++II N KI KK N + + IS + D +
Sbjct: 1163 VKKVDLINKLKEMKFDRIINKNSNKSARDKI----KKKKNAFDEEDAAISSDEEKDGAQE 1218
Query: 452 S---DIQAQE-ILKMPLQRLTNMEQKKIINKYENVIKKVIDL 489
D + + +L +PL LT KK+I + ++ KK D+
Sbjct: 1219 EQDDDTKGYDYLLSLPLWSLTLERVKKLIEERDSK-KKEWDI 1259
Score = 40 (19.1 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 1521 GIIKSIDTNKGAIIQLSNEVEGYLRISEEDNKHE-KKLKIG 1560
G + SI+ N+G+ +Q + + DN+ E +L IG
Sbjct: 950 GFLGSIEANQGSKVQGGQYLSKGIWKKLSDNRFEITELPIG 990
>CGD|CAL0005199 [details] [associations]
symbol:TOP2 species:5476 "Candida albicans" [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IGI;ISS]
[GO:0036244 "cellular response to neutral pH" evidence=IMP]
[GO:0009267 "cellular response to starvation" evidence=IMP]
[GO:0030447 "filamentous growth" evidence=IMP] [GO:0097047 "DNA
replication termination region" evidence=IEA] [GO:0000795
"synaptonemal complex" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0036170 "filamentous growth of a population of
unicellular organisms in response to starvation" evidence=IMP]
[GO:0036178 "filamentous growth of a population of unicellular
organisms in response to neutral pH" evidence=IMP] [GO:0006406
"mRNA export from nucleus" evidence=IEA] [GO:0006333 "chromatin
assembly or disassembly" evidence=IEA] [GO:0044774 "mitotic DNA
integrity checkpoint" evidence=IEA] [GO:0000712 "resolution of
meiotic recombination intermediates" evidence=IEA] [GO:0097046
"replication fork progression beyond termination site"
evidence=IEA] [GO:0031055 "chromatin remodeling at centromere"
evidence=IEA] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=IEA] [GO:0007076 "mitotic chromosome
condensation" evidence=IEA] [GO:0000019 "regulation of mitotic
recombination" evidence=IEA] [GO:0042790 "transcription of nuclear
large rRNA transcript from RNA polymerase I promoter" evidence=IEA]
[GO:0006265 "DNA topological change" evidence=IEA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 PRINTS:PR00418 SMART:SM00387 SMART:SM00433
SMART:SM00434 CGD:CAL0005199 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005694 GO:GO:0036244 GO:GO:0036178
GO:GO:0009267 Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0036170
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0006265 EMBL:AACQ01000084 EMBL:AACQ01000083 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 KO:K03164 RefSeq:XP_715530.1 RefSeq:XP_715586.1
ProteinModelPortal:Q5A1E7 SMR:Q5A1E7 STRING:Q5A1E7 GeneID:3642722
GeneID:3642777 KEGG:cal:CaO19.10391 KEGG:cal:CaO19.2873
Uniprot:Q5A1E7
Length = 1461
Score = 217 (81.4 bits), Expect = 5.5e-12, Sum P(2) = 5.5e-12
Identities = 59/201 (29%), Positives = 104/201 (51%)
Query: 7 EVISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKC 66
E+ I + + + K + ++MS V R++P V DG KP R+VL+ + +
Sbjct: 726 EITEIPISDFINKELILFSMSDNV-RSIPSVLDGFKPGQRKVLYGCFKKKLRSEIKVAQL 784
Query: 67 ARVVGETMGKYHPHGDVSIYDALVRMAQSF--SLRCTLVDGQGNFGS--IDGDSAAAMRY 122
A V E G YH HG+ S+ ++ +AQ+F S ++ G+FGS G +A RY
Sbjct: 785 AGYVSENTG-YH-HGEQSLVQTIIGLAQNFVGSNNINVLKPNGSFGSRAAGGKDFSAARY 842
Query: 123 TECRLNKISNELLIDLDKETIDFISNYDGKEKEPS-VLPTRIPNLLINGSSGIAVGMATN 181
L++I+ ++ LD ++ + D + EP LP +P +L+NG+ GI G +TN
Sbjct: 843 IFTELSEITRKIFNPLDDPLYTYVQD-DEQTVEPEWYLPV-LPMILVNGAEGIGTGWSTN 900
Query: 182 IPPHNLTEVIDGVLYVLHNPE 202
IP +N +++ + +++ E
Sbjct: 901 IPSYNPKDLVTNIRRLMNGEE 921
Score = 45 (20.9 bits), Expect = 5.5e-12, Sum P(2) = 5.5e-12
Identities = 12/52 (23%), Positives = 27/52 (51%)
Query: 733 MRLEKKQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISI 784
+RLE QK + N Q Q ++ + + + K + K+ + N+ K ++++
Sbjct: 1059 VRLEYYQKRKDYMTDNLQNQLLMLSEQARFIKMIIEKQLSVANKKKKQLVAL 1110
Score = 37 (18.1 bits), Expect = 3.7e-11, Sum P(2) = 3.7e-11
Identities = 22/114 (19%), Positives = 42/114 (36%)
Query: 680 IIAVNLSNEDFLIGAALTDGSYDIM-LFSDSGKAVRFNENSVRAMGRSARGVIGMRLEKK 738
++ SNE ++ DI+ FS S + + + + GR+ K+
Sbjct: 1289 VVKKEASNEPQASSSSKPKEKDDILSFFSSSSSSAK---KTTKPSGRATSN-------KE 1338
Query: 739 QKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGK 792
+ I L ++ + + + T +K+ TK T K K +GK
Sbjct: 1339 IETITLFSDDDDDEDIFNLNSSS---STKVKKETKSRSATPAAEKSKKPKSSGK 1389
>UNIPROTKB|Q5A1E7 [details] [associations]
symbol:TOP2 "DNA topoisomerase 2" species:237561 "Candida
albicans SC5314" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IGI] [GO:0009267 "cellular
response to starvation" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0036170 "filamentous growth of a
population of unicellular organisms in response to starvation"
evidence=IMP] [GO:0036178 "filamentous growth of a population of
unicellular organisms in response to neutral pH" evidence=IMP]
[GO:0036244 "cellular response to neutral pH" evidence=IMP]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 PRINTS:PR00418 SMART:SM00387 SMART:SM00433
SMART:SM00434 CGD:CAL0005199 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005694 GO:GO:0036244 GO:GO:0036178
GO:GO:0009267 Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0036170
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0006265 EMBL:AACQ01000084 EMBL:AACQ01000083 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 KO:K03164 RefSeq:XP_715530.1 RefSeq:XP_715586.1
ProteinModelPortal:Q5A1E7 SMR:Q5A1E7 STRING:Q5A1E7 GeneID:3642722
GeneID:3642777 KEGG:cal:CaO19.10391 KEGG:cal:CaO19.2873
Uniprot:Q5A1E7
Length = 1461
Score = 217 (81.4 bits), Expect = 5.5e-12, Sum P(2) = 5.5e-12
Identities = 59/201 (29%), Positives = 104/201 (51%)
Query: 7 EVISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKC 66
E+ I + + + K + ++MS V R++P V DG KP R+VL+ + +
Sbjct: 726 EITEIPISDFINKELILFSMSDNV-RSIPSVLDGFKPGQRKVLYGCFKKKLRSEIKVAQL 784
Query: 67 ARVVGETMGKYHPHGDVSIYDALVRMAQSF--SLRCTLVDGQGNFGS--IDGDSAAAMRY 122
A V E G YH HG+ S+ ++ +AQ+F S ++ G+FGS G +A RY
Sbjct: 785 AGYVSENTG-YH-HGEQSLVQTIIGLAQNFVGSNNINVLKPNGSFGSRAAGGKDFSAARY 842
Query: 123 TECRLNKISNELLIDLDKETIDFISNYDGKEKEPS-VLPTRIPNLLINGSSGIAVGMATN 181
L++I+ ++ LD ++ + D + EP LP +P +L+NG+ GI G +TN
Sbjct: 843 IFTELSEITRKIFNPLDDPLYTYVQD-DEQTVEPEWYLPV-LPMILVNGAEGIGTGWSTN 900
Query: 182 IPPHNLTEVIDGVLYVLHNPE 202
IP +N +++ + +++ E
Sbjct: 901 IPSYNPKDLVTNIRRLMNGEE 921
Score = 45 (20.9 bits), Expect = 5.5e-12, Sum P(2) = 5.5e-12
Identities = 12/52 (23%), Positives = 27/52 (51%)
Query: 733 MRLEKKQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISI 784
+RLE QK + N Q Q ++ + + + K + K+ + N+ K ++++
Sbjct: 1059 VRLEYYQKRKDYMTDNLQNQLLMLSEQARFIKMIIEKQLSVANKKKKQLVAL 1110
Score = 37 (18.1 bits), Expect = 3.7e-11, Sum P(2) = 3.7e-11
Identities = 22/114 (19%), Positives = 42/114 (36%)
Query: 680 IIAVNLSNEDFLIGAALTDGSYDIM-LFSDSGKAVRFNENSVRAMGRSARGVIGMRLEKK 738
++ SNE ++ DI+ FS S + + + + GR+ K+
Sbjct: 1289 VVKKEASNEPQASSSSKPKEKDDILSFFSSSSSSAK---KTTKPSGRATSN-------KE 1338
Query: 739 QKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGK 792
+ I L ++ + + + T +K+ TK T K K +GK
Sbjct: 1339 IETITLFSDDDDDEDIFNLNSSS---STKVKKETKSRSATPAAEKSKKPKSSGK 1389
>MGI|MGI:98791 [details] [associations]
symbol:Top2b "topoisomerase (DNA) II beta" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000712 "resolution of meiotic recombination intermediates"
evidence=IBA] [GO:0000795 "synaptonemal complex" evidence=IBA]
[GO:0000819 "sister chromatid segregation" evidence=IBA]
[GO:0001764 "neuron migration" evidence=IMP] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=ISO;IBA] [GO:0003916 "DNA topoisomerase activity"
evidence=IEA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISO;IBA] [GO:0005080 "protein
kinase C binding" evidence=ISO;IBA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005694 "chromosome" evidence=IDA] [GO:0005829 "cytosol"
evidence=ISO] [GO:0006259 "DNA metabolic process" evidence=IEA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=ISO;IBA] [GO:0006312
"mitotic recombination" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0007409 "axonogenesis" evidence=IMP]
[GO:0008022 "protein C-terminus binding" evidence=ISO] [GO:0016853
"isomerase activity" evidence=IEA] [GO:0019899 "enzyme binding"
evidence=ISO] [GO:0030900 "forebrain development" evidence=IMP]
[GO:0042826 "histone deacetylase binding" evidence=ISO;IBA]
[GO:0044774 "mitotic DNA integrity checkpoint" evidence=IBA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=ISO] [GO:0071778 "WINAC
complex" evidence=ISO;IBA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
MGI:MGI:98791 InterPro:IPR006171 GO:GO:0005829 GO:GO:0005524
GO:GO:0001764 GO:GO:0005080 GO:GO:0005654 GO:GO:0005730
GO:GO:0030900 GO:GO:0003682 GO:GO:0006261 GO:GO:0007409
Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0042826 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
GO:GO:0071778 GO:GO:0070683 GO:GO:0000712 GO:GO:0000795
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 eggNOG:COG0187 Gene3D:3.40.50.670
PROSITE:PS50880 KO:K03164 HOGENOM:HOG000216693 HOVERGEN:HBG052998
GeneTree:ENSGT00390000016222 CTD:7155 OMA:AKEYFQD EMBL:D38046
EMBL:BC041106 EMBL:BC054541 IPI:IPI00135443 RefSeq:NP_033435.2
UniGene:Mm.130362 ProteinModelPortal:Q64511 SMR:Q64511
IntAct:Q64511 STRING:Q64511 PhosphoSite:Q64511 PaxDb:Q64511
PRIDE:Q64511 Ensembl:ENSMUST00000017629 GeneID:21974 KEGG:mmu:21974
UCSC:uc007shc.1 InParanoid:Q64511 OrthoDB:EOG4640B2
BindingDB:Q64511 ChEMBL:CHEMBL5564 NextBio:301674 Bgee:Q64511
CleanEx:MM_TOP2B Genevestigator:Q64511
GermOnline:ENSMUSG00000017485 Uniprot:Q64511
Length = 1612
Score = 200 (75.5 bits), Expect = 7.5e-12, Sum P(2) = 7.5e-12
Identities = 56/174 (32%), Positives = 91/174 (52%)
Query: 32 RALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGET--MGKYHPHGDVSIYDAL 89
R++P + DG KP R+VLF + N+ + VK A++ G M YH HG+ ++ +
Sbjct: 722 RSIPSLVDGFKPGQRKVLFTCFKRND---KREVKVAQLAGSVAEMSAYH-HGEQALMMTI 777
Query: 90 VRMAQSF--SLRCTLVDGQGNFGSI--DGDSAAAMRYTECRLNKISNELLIDLDKETIDF 145
V +AQ+F S L+ G FG+ G AA+ RY L+ ++ L +D + F
Sbjct: 778 VNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSSLARLLFPAVDDNLLKF 837
Query: 146 ISNYDGKEK-EPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGVLYVL 198
+ YD ++ EP IP +LING+ GI G A +P ++ E+++ V +L
Sbjct: 838 L--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRML 889
Score = 62 (26.9 bits), Expect = 7.5e-12, Sum P(2) = 7.5e-12
Identities = 21/87 (24%), Positives = 42/87 (48%)
Query: 255 NRTAIIIDELPY----QVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVIELKRN 310
+R + I ELP QV K+ +LE + +K IS+ ++ + ++ V+++
Sbjct: 926 DRNTVEITELPVRTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEE 984
Query: 311 EIPEIVLNKLYKQTQLQNTFGMNMLAL 337
++ + L+K +LQ T N + L
Sbjct: 985 KLAQAEAAGLHKVFKLQTTLTCNSMVL 1011
Score = 53 (23.7 bits), Expect = 6.4e-11, Sum P(2) = 6.4e-11
Identities = 33/181 (18%), Positives = 72/181 (39%)
Query: 404 QEAKNKIIESTWNLPDVSKIIGFNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMP 463
Q K +++E N D + + + K Y+T + + + K+ KL+ +A + K+
Sbjct: 942 QVYKEQVLEPMLNGTDKTPALISDYKEYHTDTTVKFVVKMTEE---KLAQAEAAGLHKVF 998
Query: 464 LQRLTNMEQKKIINKYENVIKKVIDLTDILSNS-KRXXXXXXXXXXXXKNKYGSHKKNIR 522
+ T ++ + +KK + DIL G+ +
Sbjct: 999 KLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSYYGLRKEWLVGMLGAESTKLN 1058
Query: 523 -RSEIILNAINPS-TEDLIASQDMVITLSNLGYIKSQPISEYR-AQKRGGRGKKAMMTKD 579
++ IL I T + + +D++ L GY +S P+ ++ AQ++ + + D
Sbjct: 1059 NQARFILEKIQGKITIENRSKKDLIQMLVQRGY-ESDPVKAWKEAQEKAAEEEDSQNQHD 1117
Query: 580 E 580
+
Sbjct: 1118 D 1118
>UNIPROTKB|Q64399 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2-beta" species:10030
"Cricetulus longicaudatus" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=ISS] [GO:0006265 "DNA
topological change" evidence=ISS] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0005694
GO:GO:0005730 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 PROSITE:PS50880 HOVERGEN:HBG052998 EMBL:X86455
ProteinModelPortal:Q64399 SMR:Q64399 PRIDE:Q64399 Uniprot:Q64399
Length = 1612
Score = 200 (75.5 bits), Expect = 7.5e-12, Sum P(2) = 7.5e-12
Identities = 56/174 (32%), Positives = 91/174 (52%)
Query: 32 RALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGET--MGKYHPHGDVSIYDAL 89
R++P + DG KP R+VLF + N+ + VK A++ G M YH HG+ ++ +
Sbjct: 722 RSIPSLVDGFKPGQRKVLFTCFKRND---KREVKVAQLAGSVAEMSAYH-HGEQALMMTI 777
Query: 90 VRMAQSF--SLRCTLVDGQGNFGSI--DGDSAAAMRYTECRLNKISNELLIDLDKETIDF 145
V +AQ+F S L+ G FG+ G AA+ RY L+ ++ L +D + F
Sbjct: 778 VNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSSLARLLFPAVDDNLLKF 837
Query: 146 ISNYDGKEK-EPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGVLYVL 198
+ YD ++ EP IP +LING+ GI G A +P ++ E+++ V +L
Sbjct: 838 L--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRML 889
Score = 62 (26.9 bits), Expect = 7.5e-12, Sum P(2) = 7.5e-12
Identities = 21/87 (24%), Positives = 42/87 (48%)
Query: 255 NRTAIIIDELPY----QVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVIELKRN 310
+R + I ELP QV K+ +LE + +K IS+ ++ + ++ V+++
Sbjct: 926 DRNTVEITELPVRTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEE 984
Query: 311 EIPEIVLNKLYKQTQLQNTFGMNMLAL 337
++ + L+K +LQ T N + L
Sbjct: 985 KLAQAEAAGLHKVFKLQTTLTCNSMVL 1011
Score = 51 (23.0 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 33/181 (18%), Positives = 71/181 (39%)
Query: 404 QEAKNKIIESTWNLPDVSKIIGFNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMP 463
Q K +++E N D + + + K Y+T + + + K+ KL+ +A + K+
Sbjct: 942 QVYKEQVLEPMLNGTDKTPALISDYKEYHTDTTVKFVVKMTEE---KLAQAEAAGLHKVF 998
Query: 464 LQRLTNMEQKKIINKYENVIKKVIDLTDILSNS-KRXXXXXXXXXXXXKNKYGSHKKNIR 522
+ T ++ + +KK + DIL G+ +
Sbjct: 999 KLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSYYGLRKEWLVGMLGAESTKLN 1058
Query: 523 -RSEIILNAINPS-TEDLIASQDMVITLSNLGYIKSQPISEYR-AQKRGGRGKKAMMTKD 579
++ IL I T + + +D++ L GY +S P+ ++ AQ++ + D
Sbjct: 1059 NQARFILEKIQGKITIENRSKKDLIQMLVQRGY-ESDPVRAWKEAQEKAAEEEDTQNQHD 1117
Query: 580 E 580
+
Sbjct: 1118 D 1118
>UNIPROTKB|F1NZF0 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2" species:9031 "Gallus
gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003918
"DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 IPI:IPI00822514 GeneTree:ENSGT00390000016222
EMBL:AADN02068749 Ensembl:ENSGALT00000040062 Uniprot:F1NZF0
Length = 1553
Score = 206 (77.6 bits), Expect = 8.5e-12, Sum P(2) = 8.5e-12
Identities = 67/226 (29%), Positives = 106/226 (46%)
Query: 32 RALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGET--MGKYHPHGDVSIYDAL 89
R++P + DGLKP R+VLF + N+ + VK A++ G M YH HG+ S+ +
Sbjct: 714 RSIPSLVDGLKPGQRKVLFTCFKRND---KREVKVAQLAGSVAEMSSYH-HGEASLMMTI 769
Query: 90 VRMAQSF--SLRCTLVDGQGNFGSI--DGDSAAAMRYTECRLNKISNELLIDLDKETIDF 145
+ +AQ+F S L+ G FG+ G +A+ RY L+ ++ L +D + F
Sbjct: 770 INLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLLFPPVDDNVLRF 829
Query: 146 ISNYDGKEK-EPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGVLYVLHNPECS 204
+ YD ++ EP IP +LING+ GI G + IP ++ E ++ + +L E
Sbjct: 830 L--YDDNQRVEPEWYMPIIPMVLINGAEGIGTGWSCKIPNFDIRETVNNIRCLLDGKE-- 885
Query: 205 INDLIKIIPAPDFPTAGIIYG-LSSVHDGYYTGKGRVIIRAKTHIE 249
P P P+ G + + Y G V I T IE
Sbjct: 886 --------PLPMLPSYKNFKGTIDELGPNQYVISGEVSILDSTTIE 923
Score = 55 (24.4 bits), Expect = 8.5e-12, Sum P(2) = 8.5e-12
Identities = 53/248 (21%), Positives = 102/248 (41%)
Query: 257 TAIIIDELPY----QVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVIELKRNEI 312
T I I ELP Q K+ +LE + EK I++ ++ + ++ V+++ ++
Sbjct: 920 TTIEITELPVRTWTQTYKEQVLEPMLNGT-EKTPPLITDYKEYHTDTTVKFVVKMSEEKL 978
Query: 313 PEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVIKRRTIFELRK 372
E L+K +LQ N + L + L + ++++K FELR
Sbjct: 979 AEAEAVGLHKVFKLQTNLTCNSMVLFDHVGFLKKYES--------PQDILKE--FFELR- 1027
Query: 373 AREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIGFNKKNYN 432
R Y E L I + ++ ++ ++ KI+ N P I ++ Y
Sbjct: 1028 LRYYGLRKEWL-IGMLGAESAKLNNQARFILEKIDGKIVIE--NKPKKELIQVLIQRGYE 1084
Query: 433 TISKINNISKLQNNDMYKLSDIQAQE-----------ILKMPLQRLTNMEQKKIINKYEN 481
+ + +LQN + + D +E +L MPL LT ++ ++ + +N
Sbjct: 1085 S-DPVKAWKELQNKEEEE-GDESGEESAAATGPDFNYLLNMPLWYLTKEKKDELCKQRDN 1142
Query: 482 VIKKVIDL 489
K++ DL
Sbjct: 1143 KDKELEDL 1150
>UNIPROTKB|F1MU48 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2" species:9913 "Bos
taurus" [GO:0071778 "WINAC complex" evidence=IEA] [GO:0046982
"protein heterodimerization activity" evidence=IEA] [GO:0042826
"histone deacetylase binding" evidence=IEA] [GO:0030900 "forebrain
development" evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007409 "axonogenesis" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005080 "protein kinase C binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001764 "neuron migration"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006265
"DNA topological change" evidence=IEA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005829 GO:GO:0005524
GO:GO:0001764 GO:GO:0005654 GO:GO:0030900 GO:GO:0003682
GO:GO:0007409 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000792 GO:GO:0071778
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 GeneTree:ENSGT00390000016222
OMA:AKEYFQD EMBL:DAAA02061099 EMBL:DAAA02061100 EMBL:DAAA02061101
EMBL:DAAA02061102 IPI:IPI01003475 Ensembl:ENSBTAT00000006030
Uniprot:F1MU48
Length = 1599
Score = 199 (75.1 bits), Expect = 9.4e-12, Sum P(2) = 9.4e-12
Identities = 56/174 (32%), Positives = 91/174 (52%)
Query: 32 RALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGET--MGKYHPHGDVSIYDAL 89
R++P + DG KP R+VLF + N+ + VK A++ G M YH HG+ ++ +
Sbjct: 713 RSIPSLVDGFKPGQRKVLFTCFKRND---KREVKVAQLAGSVAEMSAYH-HGEQALMMTI 768
Query: 90 VRMAQSF--SLRCTLVDGQGNFGSI--DGDSAAAMRYTECRLNKISNELLIDLDKETIDF 145
V +AQ+F S L+ G FG+ G AA+ RY L+ ++ L +D + F
Sbjct: 769 VNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLKF 828
Query: 146 ISNYDGKEK-EPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGVLYVL 198
+ YD ++ EP IP +LING+ GI G A +P ++ E+++ V +L
Sbjct: 829 L--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRML 880
Score = 62 (26.9 bits), Expect = 9.4e-12, Sum P(2) = 9.4e-12
Identities = 21/87 (24%), Positives = 42/87 (48%)
Query: 255 NRTAIIIDELPY----QVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVIELKRN 310
+R + I ELP QV K+ +LE + +K IS+ ++ + ++ V+++
Sbjct: 917 DRNTVEITELPVRTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEE 975
Query: 311 EIPEIVLNKLYKQTQLQNTFGMNMLAL 337
++ + L+K +LQ T N + L
Sbjct: 976 KLAQAEAAGLHKVFKLQTTLTCNSMVL 1002
Score = 55 (24.4 bits), Expect = 5.0e-11, Sum P(2) = 5.0e-11
Identities = 33/181 (18%), Positives = 73/181 (40%)
Query: 404 QEAKNKIIESTWNLPDVSKIIGFNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMP 463
Q K +++E N D + + + K Y+T + + + K+ KL+ +A + K+
Sbjct: 933 QVYKEQVLEPMLNGTDKTPALISDYKEYHTDTTVKFVVKMTEE---KLAQAEAAGLHKVF 989
Query: 464 LQRLTNMEQKKIINKYENVIKKVIDLTDILSNS-KRXXXXXXXXXXXXKNKYGSHKKNIR 522
+ T ++ + +KK + DIL G+ +
Sbjct: 990 KLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSYYGLRKEWLVGMLGAESTKLN 1049
Query: 523 -RSEIILNAINPS-TEDLIASQDMVITLSNLGYIKSQPISEYR-AQKRGGRGKKAMMTKD 579
++ IL I T + + +D++ L GY +S P+ ++ AQ++ +++ D
Sbjct: 1050 NQARFILEKIQGKITIENRSKKDLIQMLVQRGY-ESDPVKAWKEAQEKAAEEEESQNQHD 1108
Query: 580 E 580
+
Sbjct: 1109 D 1109
>UNIPROTKB|Q02880 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2-beta" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0001764 "neuron migration"
evidence=IEA] [GO:0007409 "axonogenesis" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0000712 "resolution of
meiotic recombination intermediates" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0000819 "sister chromatid
segregation" evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IDA;IBA] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IDA;IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0009295 "nucleoid" evidence=IBA] [GO:0005080
"protein kinase C binding" evidence=IPI] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0042826
"histone deacetylase binding" evidence=IPI] [GO:0000792
"heterochromatin" evidence=IDA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0008022
"protein C-terminus binding" evidence=IPI] [GO:0046982 "protein
heterodimerization activity" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0019899 "enzyme binding" evidence=IPI]
[GO:0071778 "WINAC complex" evidence=IDA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005829 GO:GO:0005524
GO:GO:0001764 GO:GO:0005654 GO:GO:0030900 GO:GO:0003682
GO:GO:0006261 GO:GO:0007409 Gene3D:3.30.565.10 SUPFAM:SSF55874
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 GO:GO:0071778 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
HOGENOM:HOG000216693 HOVERGEN:HBG052998 CTD:7155 EMBL:X68060
EMBL:X71911 EMBL:Z15111 EMBL:Z15115 EMBL:M27504 EMBL:AJ011721
EMBL:AJ011722 EMBL:AJ011723 EMBL:AJ011724 EMBL:AJ011725
EMBL:AJ011726 EMBL:AJ011727 EMBL:AJ011728 EMBL:AJ011729
EMBL:AJ011730 EMBL:AJ011731 EMBL:AJ011732 EMBL:X53662 EMBL:U54831
IPI:IPI00027280 IPI:IPI00217709 PIR:S26730 RefSeq:NP_001059.2
UniGene:Hs.475733 PDB:3QX3 PDBsum:3QX3 ProteinModelPortal:Q02880
SMR:Q02880 IntAct:Q02880 STRING:Q02880 PhosphoSite:Q02880
DMDM:20141946 PaxDb:Q02880 PRIDE:Q02880 Ensembl:ENST00000264331
Ensembl:ENST00000435706 GeneID:7155 KEGG:hsa:7155 UCSC:uc003cdj.2
UCSC:uc011awn.1 GeneCards:GC03M025639 H-InvDB:HIX0030807
HGNC:HGNC:11990 HPA:CAB004601 HPA:HPA024120 MIM:126431
neXtProt:NX_Q02880 PharmGKB:PA36672 InParanoid:Q02880 OMA:AKEYFQD
PhylomeDB:Q02880 BindingDB:Q02880 ChEMBL:CHEMBL3396 ChiTaRS:TOP2B
GenomeRNAi:7155 NextBio:27998 ArrayExpress:Q02880 Bgee:Q02880
CleanEx:HS_TOP2B Genevestigator:Q02880 GermOnline:ENSG00000077097
Uniprot:Q02880
Length = 1626
Score = 199 (75.1 bits), Expect = 9.8e-12, Sum P(2) = 9.8e-12
Identities = 56/174 (32%), Positives = 91/174 (52%)
Query: 32 RALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGET--MGKYHPHGDVSIYDAL 89
R++P + DG KP R+VLF + N+ + VK A++ G M YH HG+ ++ +
Sbjct: 734 RSIPSLVDGFKPGQRKVLFTCFKRND---KREVKVAQLAGSVAEMSAYH-HGEQALMMTI 789
Query: 90 VRMAQSF--SLRCTLVDGQGNFGSI--DGDSAAAMRYTECRLNKISNELLIDLDKETIDF 145
V +AQ+F S L+ G FG+ G AA+ RY L+ ++ L +D + F
Sbjct: 790 VNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLKF 849
Query: 146 ISNYDGKEK-EPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGVLYVL 198
+ YD ++ EP IP +LING+ GI G A +P ++ E+++ V +L
Sbjct: 850 L--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRML 901
Score = 62 (26.9 bits), Expect = 9.8e-12, Sum P(2) = 9.8e-12
Identities = 21/87 (24%), Positives = 42/87 (48%)
Query: 255 NRTAIIIDELPY----QVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVIELKRN 310
+R + I ELP QV K+ +LE + +K IS+ ++ + ++ V+++
Sbjct: 938 DRNTVEITELPVRTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEE 996
Query: 311 EIPEIVLNKLYKQTQLQNTFGMNMLAL 337
++ + L+K +LQ T N + L
Sbjct: 997 KLAQAEAAGLHKVFKLQTTLTCNSMVL 1023
Score = 52 (23.4 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 33/181 (18%), Positives = 71/181 (39%)
Query: 404 QEAKNKIIESTWNLPDVSKIIGFNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMP 463
Q K +++E N D + + + K Y+T + + + K+ KL+ +A + K+
Sbjct: 954 QVYKEQVLEPMLNGTDKTPALISDYKEYHTDTTVKFVVKMTEE---KLAQAEAAGLHKVF 1010
Query: 464 LQRLTNMEQKKIINKYENVIKKVIDLTDILSNS-KRXXXXXXXXXXXXKNKYGSHKKNIR 522
+ T ++ + +KK + DIL G+ +
Sbjct: 1011 KLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSYYGLRKEWLVGMLGAESTKLN 1070
Query: 523 -RSEIILNAINPS-TEDLIASQDMVITLSNLGYIKSQPISEYR-AQKRGGRGKKAMMTKD 579
++ IL I T + + +D++ L GY +S P+ ++ AQ++ + D
Sbjct: 1071 NQARFILEKIQGKITIENRSKKDLIQMLVQRGY-ESDPVKAWKEAQEKAAEEDETQNQHD 1129
Query: 580 E 580
+
Sbjct: 1130 D 1130
>SGD|S000005032 [details] [associations]
symbol:TOP2 "Topoisomerase II, relieves torsional strain in
DNA by cleaving and re" species:4932 "Saccharomyces cerevisiae"
[GO:0044774 "mitotic DNA integrity checkpoint" evidence=IMP]
[GO:0016853 "isomerase activity" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA;IDA]
[GO:0006333 "chromatin assembly or disassembly" evidence=IMP]
[GO:0006265 "DNA topological change" evidence=IEA;IDA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=IMP] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0000795 "synaptonemal complex"
evidence=IDA] [GO:0000019 "regulation of mitotic recombination"
evidence=IMP] [GO:0000819 "sister chromatid segregation"
evidence=IBA] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003916 "DNA topoisomerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0006259
"DNA metabolic process" evidence=IEA] [GO:0031055 "chromatin
remodeling at centromere" evidence=IMP] [GO:0097046 "replication
fork progression beyond termination site" evidence=IMP] [GO:0097047
"DNA replication termination region" evidence=IPI]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
SGD:S000005032 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005739
GO:GO:0005524 EMBL:BK006947 GO:GO:0006333 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0009330 GO:GO:0070683
GO:GO:0006271 GO:GO:0000712 EMBL:X89016 GO:GO:0000795 EMBL:AF458969
EMBL:AF458971 EMBL:AF458972 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 GO:GO:0031055
GO:GO:0000019 KO:K02952 GO:GO:0097046 RefSeq:NP_014311.3
GeneID:855636 KEGG:sce:YNL088W KO:K03164 RefSeq:NP_014318.3
GeneID:855643 KEGG:sce:YNL081C HOGENOM:HOG000216693
GeneTree:ENSGT00390000016222 OMA:AKEYFQD OrthoDB:EOG4XPTPZ
EMBL:M13814 EMBL:Z71364 PIR:S57534 PDB:1BGW PDB:1BJT PDB:1PVG
PDB:1QZR PDB:2RGR PDB:3L4J PDB:3L4K PDB:4GFH PDBsum:1BGW
PDBsum:1BJT PDBsum:1PVG PDBsum:1QZR PDBsum:2RGR PDBsum:3L4J
PDBsum:3L4K PDBsum:4GFH DisProt:DP00076 ProteinModelPortal:P06786
SMR:P06786 DIP:DIP-2300N IntAct:P06786 MINT:MINT-495862
STRING:P06786 PaxDb:P06786 PeptideAtlas:P06786 EnsemblFungi:YNL088W
CYGD:YNL088w ChEMBL:CHEMBL5290 EvolutionaryTrace:P06786
NextBio:979854 ArrayExpress:P06786 Genevestigator:P06786
GermOnline:YNL088W GO:GO:0097047 Uniprot:P06786
Length = 1428
Score = 221 (82.9 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 59/176 (33%), Positives = 91/176 (51%)
Query: 32 RALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGETMGKYHPHGDVSIYDALVR 91
R++P+V DG KP R+VL+ + N + A V E YH HG+ S+ ++
Sbjct: 690 RSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQLAPYVSECTA-YH-HGEQSLAQTIIG 747
Query: 92 MAQSF--SLRCTLVDGQGNFGS--IDGDSAAAMRYTECRLNKISNELLIDLDKETIDFIS 147
+AQ+F S L+ G FG+ G AAA RY LNK++ ++ D +I
Sbjct: 748 LAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAARYIYTELNKLTRKIFHPADDPLYKYIQ 807
Query: 148 NYDGKEKEPS-VLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGVLYVLHNPE 202
D K EP LP +P +L+NG+ GI G +T IPP N E+I + +++++ E
Sbjct: 808 E-DEKTVEPEWYLPI-LPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEE 861
Score = 38 (18.4 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 262 DELPYQVNKKSLLEKISQLVKEKKLECISNLRD 294
+ L ++V K S K +++ EK+L + R+
Sbjct: 1014 ERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRN 1046
>UNIPROTKB|O42130 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2-alpha" species:9031
"Gallus gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0000712
"resolution of meiotic recombination intermediates" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000819
"sister chromatid segregation" evidence=IBA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISS;IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=ISS;IBA] [GO:0006312
"mitotic recombination" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=ISS;IBA] [GO:0009295 "nucleoid" evidence=IBA]
[GO:0000287 "magnesium ion binding" evidence=ISS] [GO:0008301 "DNA
binding, bending" evidence=ISS] [GO:0006974 "response to DNA damage
stimulus" evidence=ISS] [GO:0043065 "positive regulation of
apoptotic process" evidence=ISS] [GO:0006266 "DNA ligation"
evidence=ISS] [GO:0030263 "apoptotic chromosome condensation"
evidence=ISS] [GO:0008144 "drug binding" evidence=ISS] [GO:0003677
"DNA binding" evidence=ISS] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0009330 "DNA
topoisomerase complex (ATP-hydrolyzing)" evidence=ISS]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR012542 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005654 GO:GO:0000287 GO:GO:0008144
GO:GO:0006974 GO:GO:0006261 GO:GO:0008301 GO:GO:0043065
GO:GO:0030263 Gene3D:3.30.565.10 SUPFAM:SSF55874 GO:GO:0006266
Gene3D:3.30.230.10 InterPro:IPR020568 InterPro:IPR014721
SUPFAM:SSF54211 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 GO:GO:0009330 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
EMBL:AB007445 IPI:IPI00822514 RefSeq:NP_990122.1 UniGene:Gga.2010
ProteinModelPortal:O42130 SMR:O42130 STRING:O42130 GeneID:395570
KEGG:gga:395570 CTD:7153 HOGENOM:HOG000216693 HOVERGEN:HBG052998
NextBio:20815644 Uniprot:O42130
Length = 1553
Score = 204 (76.9 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 67/226 (29%), Positives = 106/226 (46%)
Query: 32 RALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGET--MGKYHPHGDVSIYDAL 89
R++P + DGLKP R+VLF + N+ + VK A++ G M YH HG+ S+ +
Sbjct: 714 RSIPSLVDGLKPGQRKVLFTCFKRND---KREVKGAQLAGSVAEMSSYH-HGEASLMMTI 769
Query: 90 VRMAQSF--SLRCTLVDGQGNFGSI--DGDSAAAMRYTECRLNKISNELLIDLDKETIDF 145
+ +AQ+F S L+ G FG+ G +A+ RY L+ ++ L +D + F
Sbjct: 770 INLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLLFPPVDDNVLRF 829
Query: 146 ISNYDGKEK-EPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGVLYVLHNPECS 204
+ YD ++ EP IP +LING+ GI G + IP ++ E ++ + +L E
Sbjct: 830 L--YDDNQRVEPEWYMPIIPMVLINGAEGIGTGWSCKIPNFDIRETVNNIRCLLDGKE-- 885
Query: 205 INDLIKIIPAPDFPTAGIIYG-LSSVHDGYYTGKGRVIIRAKTHIE 249
P P P+ G + + Y G V I T IE
Sbjct: 886 --------PLPMLPSYKNFKGTIDELGPNQYVISGEVSILDSTTIE 923
Score = 55 (24.4 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 53/248 (21%), Positives = 102/248 (41%)
Query: 257 TAIIIDELPY----QVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVIELKRNEI 312
T I I ELP Q K+ +LE + EK I++ ++ + ++ V+++ ++
Sbjct: 920 TTIEITELPVRTWTQTYKEQVLEPMLNGT-EKTPPLITDYKEYHTDTTVKFVVKMSEEKL 978
Query: 313 PEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVIKRRTIFELRK 372
E L+K +LQ N + L + L + ++++K FELR
Sbjct: 979 AEAEAVGLHKVFKLQTNLTCNSMVLFDHVGFLKKYES--------PQDILKE--FFELR- 1027
Query: 373 AREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIGFNKKNYN 432
R Y E L I + ++ ++ ++ KI+ N P I ++ Y
Sbjct: 1028 LRYYGLRKEWL-IGMLGAESAKLNNQARFILEKIDGKIVIE--NKPKKELIQVLIQRGYE 1084
Query: 433 TISKINNISKLQNNDMYKLSDIQAQE-----------ILKMPLQRLTNMEQKKIINKYEN 481
+ + +LQN + + D +E +L MPL LT ++ ++ + +N
Sbjct: 1085 S-DPVKAWKELQNKEEEE-GDESGEESAAATGPDFNYLLNMPLWYLTKEKKDELCKQRDN 1142
Query: 482 VIKKVIDL 489
K++ DL
Sbjct: 1143 KDKELEDL 1150
>FB|FBgn0003732 [details] [associations]
symbol:Top2 "Topoisomerase 2" species:7227 "Drosophila
melanogaster" [GO:0006265 "DNA topological change" evidence=IDA]
[GO:0005634 "nucleus" evidence=NAS;IDA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=NAS;IDA]
[GO:0000400 "four-way junction DNA binding" evidence=IDA]
[GO:0016590 "ACF complex" evidence=IDA] [GO:0008623 "CHRAC"
evidence=IDA] [GO:0007067 "mitosis" evidence=IMP;TAS] [GO:0007126
"meiosis" evidence=TAS] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005694 "chromosome"
evidence=IDA] [GO:0051310 "metaphase plate congression"
evidence=IDA] [GO:0000819 "sister chromatid segregation"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000182
"rDNA binding" evidence=IDA] [GO:0003696 "satellite DNA binding"
evidence=IDA] [GO:0006342 "chromatin silencing" evidence=IDA]
[GO:0007076 "mitotic chromosome condensation" evidence=IMP]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI]
[GO:0009295 "nucleoid" evidence=IBA] [GO:0006261 "DNA-dependent DNA
replication" evidence=IBA] [GO:0044774 "mitotic DNA integrity
checkpoint" evidence=IBA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0000795 "synaptonemal complex"
evidence=IBA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
SMART:SM00434 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0007095 GO:GO:0007052 EMBL:AE014134 GO:GO:0003729
GO:GO:0006261 GO:GO:0006342 Gene3D:3.30.565.10 SUPFAM:SSF55874
GO:GO:0007076 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0006312 GO:GO:0008623 GO:GO:0070683
GO:GO:0000712 GO:GO:0003696 GO:GO:0051310 GO:GO:0000182
GO:GO:0000795 GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 Gene3D:1.10.268.10 eggNOG:COG0187
Gene3D:3.40.50.670 PROSITE:PS50880 GO:GO:0000400 KO:K03164
GeneTree:ENSGT00390000016222 ChiTaRS:TOP2A OMA:AKEYFQD EMBL:X61209
PIR:S02160 RefSeq:NP_476760.1 UniGene:Dm.22886
ProteinModelPortal:P15348 SMR:P15348 STRING:P15348 PaxDb:P15348
PRIDE:P15348 EnsemblMetazoa:FBtr0081287 EnsemblMetazoa:FBtr0332320
GeneID:35225 KEGG:dme:Dmel_CG10223 CTD:35225 FlyBase:FBgn0003732
InParanoid:P15348 OrthoDB:EOG4HQC04 PhylomeDB:P15348
BindingDB:P15348 ChEMBL:CHEMBL2671 GenomeRNAi:35225 NextBio:792468
Bgee:P15348 GermOnline:CG10223 Uniprot:P15348
Length = 1447
Score = 208 (78.3 bits), Expect = 4.8e-11, Sum P(2) = 4.8e-11
Identities = 57/181 (31%), Positives = 100/181 (55%)
Query: 32 RALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGET--MGKYHPHGDVSIYDAL 89
R++P + DGLKP R+V+F + N+ + VK A++ G M YH HG+VS+ +
Sbjct: 693 RSIPSLVDGLKPGQRKVMFTCFKRND---KREVKVAQLSGSVAEMSAYH-HGEVSLQMTI 748
Query: 90 VRMAQSF--SLRCTLVDGQGNFGS--IDGDSAAAMRYTECRLNKISNELLIDLDKETIDF 145
V +AQ+F + L++ +G FG+ G A+ RY ++ ++ + LD +D+
Sbjct: 749 VNLAQNFVGANNINLLEPRGQFGTRLSGGKDCASARYIFTIMSPLTRLIYHPLDDPLLDY 808
Query: 146 ISNYDGKEKEPS-VLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGVLYVLHNPECS 204
+ DG++ EP LP IP +L+NG+ GI G +T I +N E++ + +++ E S
Sbjct: 809 QVD-DGQKIEPLWYLPI-IPMVLVNGAEGIGTGWSTKISNYNPREIMKNLRKMINGQEPS 866
Query: 205 I 205
+
Sbjct: 867 V 867
Score = 45 (20.9 bits), Expect = 4.8e-11, Sum P(2) = 4.8e-11
Identities = 11/45 (24%), Positives = 27/45 (60%)
Query: 918 IKKLNYNFLGKEVYLNGVNVTTLIRNEKVSNNASKIAKFKNIRKE 962
+KK +Y LG +++ +T +NE + +K+++ +++RK+
Sbjct: 1120 VKKFDY-LLGMSMWM----LTEEKKNELLKQRDTKLSELESLRKK 1159
Score = 42 (19.8 bits), Expect = 9.8e-11, Sum P(2) = 9.8e-11
Identities = 9/44 (20%), Positives = 22/44 (50%)
Query: 428 KKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNME 471
+K + ++ + L M+ L++ + E+LK +L+ +E
Sbjct: 1111 EKAFKKLTDVKKFDYLLGMSMWMLTEEKKNELLKQRDTKLSELE 1154
>UNIPROTKB|F1PRA7 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2" species:9615 "Canis
lupus familiaris" [GO:0071778 "WINAC complex" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0042826 "histone deacetylase binding" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0008022 "protein
C-terminus binding" evidence=IEA] [GO:0007409 "axonogenesis"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005080 "protein kinase C binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0001764 "neuron migration" evidence=IEA] [GO:0000792
"heterochromatin" evidence=IEA] [GO:0003918 "DNA topoisomerase type
II (ATP-hydrolyzing) activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005829 GO:GO:0005524 GO:GO:0001764
GO:GO:0005654 GO:GO:0030900 GO:GO:0003682 GO:GO:0007409
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000792 GO:GO:0071778
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 GeneTree:ENSGT00390000016222
OMA:AKEYFQD EMBL:AAEX03013556 Ensembl:ENSCAFT00000009221
Uniprot:F1PRA7
Length = 1602
Score = 192 (72.6 bits), Expect = 5.2e-11, Sum P(2) = 5.2e-11
Identities = 57/176 (32%), Positives = 91/176 (51%)
Query: 32 RALPDVRD--GLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGET--MGKYHPHGDVSIYD 87
R++P + D G KP R+VLF + N+ + VK A++ G M YH HG+ ++
Sbjct: 711 RSIPSLVDEIGFKPGQRKVLFTCFKRND---KREVKVAQLAGSVAEMSAYH-HGEQALMM 766
Query: 88 ALVRMAQSF--SLRCTLVDGQGNFGSI--DGDSAAAMRYTECRLNKISNELLIDLDKETI 143
+V +AQ+F S L+ G FG+ G AA+ RY L+ +S L +D +
Sbjct: 767 TIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSSLSRLLFPAVDDNLL 826
Query: 144 DFISNYDGKEK-EPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGVLYVL 198
F+ YD ++ EP IP +LING+ GI G A +P ++ E+++ V +L
Sbjct: 827 KFL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRML 880
Score = 62 (26.9 bits), Expect = 5.2e-11, Sum P(2) = 5.2e-11
Identities = 21/87 (24%), Positives = 42/87 (48%)
Query: 255 NRTAIIIDELPY----QVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVIELKRN 310
+R + I ELP QV K+ +LE + +K IS+ ++ + ++ V+++
Sbjct: 917 DRNTVEITELPVRTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEE 975
Query: 311 EIPEIVLNKLYKQTQLQNTFGMNMLAL 337
++ + L+K +LQ T N + L
Sbjct: 976 KLAQAEAAGLHKVFKLQTTLTCNSMVL 1002
Score = 54 (24.1 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 33/181 (18%), Positives = 72/181 (39%)
Query: 404 QEAKNKIIESTWNLPDVSKIIGFNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMP 463
Q K +++E N D + + + K Y+T + + + K+ KL+ +A + K+
Sbjct: 933 QVYKEQVLEPMLNGTDKTPALISDYKEYHTDTTVKFVVKMTEE---KLAQAEAAGLHKVF 989
Query: 464 LQRLTNMEQKKIINKYENVIKKVIDLTDILSNS-KRXXXXXXXXXXXXKNKYGSHKKNIR 522
+ T ++ + +KK + DIL G+ +
Sbjct: 990 KLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSYYGLRKEWLVGMLGAESTKLN 1049
Query: 523 -RSEIILNAINPS-TEDLIASQDMVITLSNLGYIKSQPISEYR-AQKRGGRGKKAMMTKD 579
++ IL I T + + +D++ L GY +S P+ ++ AQ++ ++ D
Sbjct: 1050 NQARFILEKIQGKITIENRSKKDLIQMLVQRGY-ESDPVKAWKEAQEKAAEEEETQNQHD 1108
Query: 580 E 580
+
Sbjct: 1109 D 1109
>UNIPROTKB|O46374 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2-alpha" species:9823 "Sus
scrofa" [GO:0008301 "DNA binding, bending" evidence=ISS]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=ISS] [GO:0000287 "magnesium ion binding" evidence=ISS]
[GO:0006265 "DNA topological change" evidence=ISS] [GO:0046982
"protein heterodimerization activity" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0045870 "positive regulation of
retroviral genome replication" evidence=IEA] [GO:0043130 "ubiquitin
binding" evidence=IEA] [GO:0043065 "positive regulation of
apoptotic process" evidence=IEA] [GO:0042826 "histone deacetylase
binding" evidence=IEA] [GO:0042803 "protein homodimerization
activity" evidence=IEA] [GO:0040016 "embryonic cleavage"
evidence=IEA] [GO:0030263 "apoptotic chromosome condensation"
evidence=IEA] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=IEA] [GO:0008144 "drug binding"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007059 "chromosome segregation" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0006266 "DNA ligation" evidence=IEA] [GO:0005814 "centriole"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005080 "protein kinase C binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0000228
"nuclear chromosome" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0007059 GO:GO:0005654
GO:GO:0005730 GO:GO:0005814 GO:GO:0000287 GO:GO:0008144
GO:GO:0045944 GO:GO:0003682 GO:GO:0040016 GO:GO:0006974
GO:GO:0008301 GO:GO:0043065 GO:GO:0030263 Gene3D:3.30.565.10
SUPFAM:SSF55874 GO:GO:0000793 GO:GO:0006266 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000228 GO:GO:0009330
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 eggNOG:COG0187 Gene3D:3.40.50.670
PROSITE:PS50880 KO:K03164 HOGENOM:HOG000216693 HOVERGEN:HBG052998
OrthoDB:EOG4KWJS0 GO:GO:0045870 GeneTree:ENSGT00390000016222
OMA:MFKQTWM EMBL:AB009387 RefSeq:NP_999049.1 UniGene:Ssc.14506
ProteinModelPortal:O46374 SMR:O46374 STRING:O46374 PRIDE:O46374
Ensembl:ENSSSCT00000019023 GeneID:396917 KEGG:ssc:396917
CTD:100038293 Uniprot:O46374
Length = 1533
Score = 214 (80.4 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
Identities = 121/465 (26%), Positives = 199/465 (42%)
Query: 32 RALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGET--MGKYHPHGDVSIYDAL 89
R++P + DGLKP R+VLF + N+ + VK A++ G M YH HG++S+ +
Sbjct: 713 RSIPSMVDGLKPGQRKVLFTCFKRND---KREVKVAQLAGSVAEMSSYH-HGEMSLMMTI 768
Query: 90 VRMAQSF--SLRCTLVDGQGNFGSI--DGDSAAAMRYTECRLNKISNELLIDLDKETIDF 145
+ +AQ+F S L+ G FG+ G +A+ RY L+ ++ L D T+ F
Sbjct: 769 INLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLLFPPKDDHTLKF 828
Query: 146 ISNYDGKEK-EPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGVLYVLHNPECS 204
+ YD ++ EP IP +LING+ GI G + IP ++ EV++ + ++ E
Sbjct: 829 L--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRLLMDGEE-- 884
Query: 205 INDLIKIIPAPDFPTAGIIYG-LSSVHDGYYTGKGRVIIRAKTHIEEFNRENRTAIIIDE 263
P P P+ G + + Y G V I T IE RT
Sbjct: 885 --------PLPMLPSYKNFKGTIEELAPNQYVISGEVAILNSTTIEISELPIRTWT--QT 934
Query: 264 LPYQVNKKSL--LEKISQLVKEKKLECISNLRDESDKSGMRIVIELKRNEIPEIVLNKLY 321
QV + L EK L+ + + E + D + K +++ E K E + L+K++
Sbjct: 935 YKEQVLEPMLNGTEKTPPLITDYR-EYHT---DTTVKFVVKMTEE-KLAEAERVGLHKVF 989
Query: 322 K-QTQLQNTFGMNMLALVNGQPKLLNLKEILY-YFILHRKEV-IKRRTIFELRKAREYAH 378
K QT L M + V K + +IL +F L K +++ + + A E A
Sbjct: 990 KLQTSLTCN-SMVLFDHVGCLKKYDTVLDILRDFFELRLKYYGLRKEWLLGMLGA-ESAK 1047
Query: 379 ILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIGFNKK--NYNTISK 436
+ L ID +II +E +I+ ++ V +K + +
Sbjct: 1048 LNNQARFILEKIDG--KIIIENKPKKELIKVLIQRGYDSDPVKAWKEAQQKVPDEEENEE 1105
Query: 437 INNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYEN 481
+N + +D S +L MPL LT E+K + K N
Sbjct: 1106 SDNEKEADKSDSVADSGPTFNYLLDMPLWYLTK-EKKDELCKLRN 1149
Score = 38 (18.4 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 1216 TMDFKVIKLDRKRN 1229
T+ FK IK +KRN
Sbjct: 1279 TLPFKPIKKAKKRN 1292
>TAIR|locus:2076201 [details] [associations]
symbol:TOPII "AT3G23890" species:3702 "Arabidopsis
thaliana" [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IBA] [GO:0000795 "synaptonemal complex"
evidence=IBA] [GO:0000819 "sister chromatid segregation"
evidence=IBA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA;ISS;IBA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0006259 "DNA metabolic process" evidence=IEA;ISS] [GO:0006261
"DNA-dependent DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IEA;ISS;IBA] [GO:0006312 "mitotic
recombination" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS;IBA] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=ISS;IBA] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0044774 "mitotic DNA integrity checkpoint"
evidence=IBA] [GO:0003916 "DNA topoisomerase activity"
evidence=ISS] [GO:0000226 "microtubule cytoskeleton organization"
evidence=RCA] [GO:0000911 "cytokinesis by cell plate formation"
evidence=RCA] [GO:0006260 "DNA replication" evidence=RCA]
[GO:0006270 "DNA replication initiation" evidence=RCA] [GO:0006275
"regulation of DNA replication" evidence=RCA] [GO:0006306 "DNA
methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0008283 "cell proliferation" evidence=RCA]
[GO:0009909 "regulation of flower development" evidence=RCA]
[GO:0009957 "epidermal cell fate specification" evidence=RCA]
[GO:0010583 "response to cyclopentenone" evidence=RCA] [GO:0016458
"gene silencing" evidence=RCA] [GO:0016572 "histone
phosphorylation" evidence=RCA] [GO:0034968 "histone lysine
methylation" evidence=RCA] [GO:0051225 "spindle assembly"
evidence=RCA] [GO:0051567 "histone H3-K9 methylation" evidence=RCA]
[GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006261 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312 EMBL:AP001297
GO:GO:0009330 GO:GO:0070683 GO:GO:0000712 GO:GO:0000795
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 eggNOG:COG0187 Gene3D:3.40.50.670
PROSITE:PS50880 KO:K03164 HOGENOM:HOG000216693 OMA:AKEYFQD
EMBL:L21015 EMBL:U12284 EMBL:U12285 EMBL:M84654 IPI:IPI00527804
PIR:S53598 RefSeq:NP_189031.1 UniGene:At.22343
ProteinModelPortal:P30182 SMR:P30182 STRING:P30182 PaxDb:P30182
PRIDE:P30182 EnsemblPlants:AT3G23890.1 GeneID:821972
KEGG:ath:AT3G23890 GeneFarm:2656 TAIR:At3g23890 InParanoid:P30182
PhylomeDB:P30182 ProtClustDB:PLN03237 Genevestigator:P30182
GermOnline:AT3G23890 Uniprot:P30182
Length = 1473
Score = 210 (79.0 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 57/174 (32%), Positives = 94/174 (54%)
Query: 32 RALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVG--ETMGKYHPHGDVSIYDAL 89
R++P + DGLKP R++LF + R +K A++VG + YH HG+ S+ A+
Sbjct: 702 RSIPSMVDGLKPGQRKILFVAFKKIA---RKEMKVAQLVGYVSLLSAYH-HGEQSLASAI 757
Query: 90 VRMAQSF--SLRCTLVDGQGNFGS--IDGDSAAAMRYTECRLNKISNELLIDLDKETIDF 145
+ MAQ + S L+ G FG+ G +A+ RY +L+ ++ L D +D+
Sbjct: 758 IGMAQDYVGSNNINLLLPNGQFGTRTSGGKDSASARYIFTKLSPVTRILFPKDDDLLLDY 817
Query: 146 ISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGVLYVLH 199
+ N DG+ EP+ IP +L+NG+ GI G +T IP +N E++ V +L+
Sbjct: 818 L-NEDGQRIEPTWYMPIIPTVLVNGAEGIGTGWSTFIPNYNPREIVANVRRLLN 870
Score = 40 (19.1 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 32/189 (16%), Positives = 69/189 (36%)
Query: 1399 EINEERRRISLGMKQCKDNPWENFXXXXXXXXXXXXXXXXXTDFGIFIGLDGNIDGLIHL 1458
EI RR+ G +PW T G++ +D + L
Sbjct: 860 EIVANVRRLLNGESMVPMDPWYRGFKGTIEKTASKEGGCTYTITGLYEEVDETTIRITEL 919
Query: 1459 SDLSWTDPGEEIIRNFKKGDEIEAIILSIDVEKERISLGIKQLEGDPFNNYVNINDKGSL 1518
W D + +++ K D + + S+ + + N + +G L
Sbjct: 920 PIRRWNDDYKNFLQSLKT-DNGAPFFQDVKAYNDEKSVDFDLILSE--ENMLAARQEGFL 976
Query: 1519 VN-GIIKSIDTNKGAIIQLSNEVEGYL---RISEE--DNKHE----KKLKIGENIDVLTV 1568
+ +I T+ + ++ Y+ +I EE D + E +K + +N+++ +
Sbjct: 977 KKFKLTTTIATSNMHLFDKKGVIKKYVTPEQILEEFFDLRFEYYEKRKETVVKNMEIELL 1036
Query: 1569 LIDHKTRYI 1577
+++K R+I
Sbjct: 1037 KLENKARFI 1045
Score = 40 (19.1 bits), Expect = 1.5e-09, Sum P(3) = 1.5e-09
Identities = 17/54 (31%), Positives = 24/54 (44%)
Query: 942 RNEKVSNNAS-KIAKFKNIRKELF-----KIQVKFRKFPGLVADGRDMGTTVFP 989
R E V N ++ K +N + + +I V RK +V D R G T FP
Sbjct: 1023 RKETVVKNMEIELLKLENKARFILAVLSGEIIVNKRKKADIVEDLRQKGFTPFP 1076
Score = 39 (18.8 bits), Expect = 1.5e-09, Sum P(3) = 1.5e-09
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 1153 KAKRLASWLSLEKAMESGEIITGTINGKVKGG 1184
K+ + S L+ K ES E + G + + GG
Sbjct: 1399 KSSSVMSRLADNKEEESSENVAGNSSSEKSGG 1430
Score = 39 (18.8 bits), Expect = 1.9e-09, Sum P(3) = 1.9e-09
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 1088 VISAEVIGLDRNFVIINADLKSEAFIP 1114
V+S E+I R I DL+ + F P
Sbjct: 1048 VLSGEIIVNKRKKADIVEDLRQKGFTP 1074
>UNIPROTKB|F1RS45 [details] [associations]
symbol:TOP2B "DNA topoisomerase 2" species:9823 "Sus
scrofa" [GO:0071778 "WINAC complex" evidence=IEA] [GO:0046982
"protein heterodimerization activity" evidence=IEA] [GO:0042826
"histone deacetylase binding" evidence=IEA] [GO:0030900 "forebrain
development" evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007409 "axonogenesis" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005080 "protein kinase C binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001764 "neuron migration"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006265
"DNA topological change" evidence=IEA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005829 GO:GO:0005524
GO:GO:0001764 GO:GO:0005654 GO:GO:0030900 GO:GO:0003682
GO:GO:0007409 Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000792 GO:GO:0071778
GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719
Gene3D:1.10.268.10 Gene3D:3.40.50.670 GeneTree:ENSGT00390000016222
OMA:AKEYFQD EMBL:CU582923 Ensembl:ENSSSCT00000012279
ArrayExpress:F1RS45 Uniprot:F1RS45
Length = 1615
Score = 189 (71.6 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 56/176 (31%), Positives = 91/176 (51%)
Query: 32 RALPDVRD--GLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGET--MGKYHPHGDVSIYD 87
R++P + D G KP R+VLF + N+ + VK A++ G M YH HG+ ++
Sbjct: 726 RSIPSLVDETGFKPGQRKVLFTCFKRND---KREVKVAQLAGSVAEMSAYH-HGEQALMM 781
Query: 88 ALVRMAQSF--SLRCTLVDGQGNFGSI--DGDSAAAMRYTECRLNKISNELLIDLDKETI 143
+V +AQ+F S L+ G FG+ G AA+ RY L+ ++ L +D +
Sbjct: 782 TIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSSLARLLFPAVDDNLL 841
Query: 144 DFISNYDGKEK-EPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGVLYVL 198
F+ YD ++ EP IP +LING+ GI G A +P ++ E+++ V +L
Sbjct: 842 KFL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRML 895
Score = 62 (26.9 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 21/87 (24%), Positives = 42/87 (48%)
Query: 255 NRTAIIIDELPY----QVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVIELKRN 310
+R + I ELP QV K+ +LE + +K IS+ ++ + ++ V+++
Sbjct: 932 DRNTVEITELPVRTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEE 990
Query: 311 EIPEIVLNKLYKQTQLQNTFGMNMLAL 337
++ + L+K +LQ T N + L
Sbjct: 991 KLAQAEAAGLHKVFKLQTTLTCNSMVL 1017
Score = 54 (24.1 bits), Expect = 7.3e-10, Sum P(2) = 7.3e-10
Identities = 33/181 (18%), Positives = 72/181 (39%)
Query: 404 QEAKNKIIESTWNLPDVSKIIGFNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMP 463
Q K +++E N D + + + K Y+T + + + K+ KL+ +A + K+
Sbjct: 948 QVYKEQVLEPMLNGTDKTPALISDYKEYHTDTTVKFVVKMTEE---KLAQAEAAGLHKVF 1004
Query: 464 LQRLTNMEQKKIINKYENVIKKVIDLTDILSNS-KRXXXXXXXXXXXXKNKYGSHKKNIR 522
+ T ++ + +KK + DIL G+ +
Sbjct: 1005 KLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSYYGLRKEWLVGMLGAESTKLN 1064
Query: 523 -RSEIILNAINPS-TEDLIASQDMVITLSNLGYIKSQPISEYR-AQKRGGRGKKAMMTKD 579
++ IL I T + + +D++ L GY +S P+ ++ AQ++ ++ D
Sbjct: 1065 NQARFILEKIQGKITIENRSKKDLIQMLVQRGY-ESDPVKAWKEAQEKAAEEEETQNQHD 1123
Query: 580 E 580
+
Sbjct: 1124 D 1124
>UNIPROTKB|J9PAY8 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2" species:9615 "Canis
lupus familiaris" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR012542 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00387 SMART:SM00433 SMART:SM00434 Pfam:PF01751
InterPro:IPR006171 GO:GO:0005524 GO:GO:0005634 GO:GO:0005694
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 GeneTree:ENSGT00390000016222 OMA:MFKQTWM
EMBL:AAEX03006463 Ensembl:ENSCAFT00000046104 Uniprot:J9PAY8
Length = 1541
Score = 222 (83.2 bits), Expect = 1.6e-10, Sum P(3) = 1.6e-10
Identities = 121/465 (26%), Positives = 203/465 (43%)
Query: 32 RALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGET--MGKYHPHGDVSIYDAL 89
R++P + DGLKP R+VLF + N+ + VK A++ G M YH HG++S+ +
Sbjct: 722 RSIPSMVDGLKPGQRKVLFTCFKRND---KREVKVAQLAGSVAEMSSYH-HGEMSLMMTI 777
Query: 90 VRMAQSF--SLRCTLVDGQGNFGSI--DGDSAAAMRYTECRLNKISNELLIDLDKETIDF 145
+ +AQ+F S L+ G FG+ G +A+ RY L+ ++ L D +T+ F
Sbjct: 778 INLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLLFPPKDDQTLKF 837
Query: 146 ISNYDGKEK-EPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGVLYVLHNPECS 204
+ YD ++ EP IP +LING+ GI G + IP ++ EV++ + ++ E
Sbjct: 838 L--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDIREVVNNIRRLMDGEE-- 893
Query: 205 INDLIKIIPAPDFPTAGIIYG-LSSVHDGYYTGKGRVIIRAKTHIEEFNRENRTAIIIDE 263
P P P+ G + + Y G V I T IE RT
Sbjct: 894 --------PLPMLPSYKNFRGTIEELAPNQYVISGEVAILNSTTIEISELPVRTWT--QT 943
Query: 264 LPYQVNKKSL--LEKISQLVKEKKLECISNLRDESDKSGMRIVIELKRNEIPEIVLNKLY 321
QV + L EK L+ + + E + D + K +++ E K E + L+K++
Sbjct: 944 YKEQVLEPMLNGTEKTPPLITDYR-EYHT---DTTVKFVVKMTEE-KLAEAERVGLHKVF 998
Query: 322 K-QTQLQNTFGMNMLALVNGQPKLLNLKEILY-YFILHRKEV-IKRRTIFELRKAREYAH 378
K QT L M + V K + +IL +F L K +++ + + A E A
Sbjct: 999 KLQTSLTCN-SMVLFDHVGCLKKYDTVLDILRDFFELRLKYYGLRKEWLLGMLGA-ESAK 1056
Query: 379 ILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIGFNKK--NYNTISK 436
+ L ID +II +E +I+ ++ V +K + +
Sbjct: 1057 LNNQARFILEKIDG--KIIIENKPKKELIKVLIQRGYDSDPVKAWKEAQQKVPDEEENEE 1114
Query: 437 INNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYEN 481
+N ++ + +D + S +L MPL LT E+K + K N
Sbjct: 1115 SDNENEAEKSDSVRDSGPTFNYLLDMPLWYLTK-EKKDELCKLRN 1158
Score = 39 (18.8 bits), Expect = 1.6e-10, Sum P(3) = 1.6e-10
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 1216 TMDFKVIKLDRKRN 1229
T+ FK IK +KRN
Sbjct: 1288 TLPFKPIKKGKKRN 1301
Score = 38 (18.4 bits), Expect = 1.6e-10, Sum P(3) = 1.6e-10
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 716 NENSVRAMGRSARGVIGM--RLEKKQK 740
NEN+ + + + G+ RLEKKQK
Sbjct: 1250 NENTEGSPQEESIEIEGLKQRLEKKQK 1276
>UNIPROTKB|F1MDU7 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2" species:9913 "Bos
taurus" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0045870
"positive regulation of retroviral genome replication"
evidence=IEA] [GO:0043130 "ubiquitin binding" evidence=IEA]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IEA] [GO:0042826 "histone deacetylase binding"
evidence=IEA] [GO:0042803 "protein homodimerization activity"
evidence=IEA] [GO:0040016 "embryonic cleavage" evidence=IEA]
[GO:0030263 "apoptotic chromosome condensation" evidence=IEA]
[GO:0009330 "DNA topoisomerase complex (ATP-hydrolyzing)"
evidence=IEA] [GO:0008144 "drug binding" evidence=IEA] [GO:0008022
"protein C-terminus binding" evidence=IEA] [GO:0007059 "chromosome
segregation" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0006266 "DNA ligation" evidence=IEA]
[GO:0006265 "DNA topological change" evidence=IEA] [GO:0005814
"centriole" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005080 "protein kinase
C binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0000793 "condensed chromosome" evidence=IEA]
[GO:0000228 "nuclear chromosome" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR012542
InterPro:IPR013506 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00204 Pfam:PF00521 Pfam:PF02518 Pfam:PF08070 PRINTS:PR00418
PROSITE:PS00177 SMART:SM00387 SMART:SM00433 SMART:SM00434
Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524 GO:GO:0007059
GO:GO:0005654 GO:GO:0005730 GO:GO:0005814 GO:GO:0008144
GO:GO:0045944 GO:GO:0003682 GO:GO:0040016 GO:GO:0006974
GO:GO:0043065 GO:GO:0030263 Gene3D:3.30.565.10 SUPFAM:SSF55874
GO:GO:0000793 GO:GO:0006266 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000228 GO:GO:0009330 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 GO:GO:0045870 GeneTree:ENSGT00390000016222
OMA:MFKQTWM EMBL:DAAA02049137 IPI:IPI00923890
Ensembl:ENSBTAT00000061367 ArrayExpress:F1MDU7 Uniprot:F1MDU7
Length = 1533
Score = 209 (78.6 bits), Expect = 2.0e-10, Sum P(5) = 2.0e-10
Identities = 68/226 (30%), Positives = 108/226 (47%)
Query: 32 RALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGET--MGKYHPHGDVSIYDAL 89
R++P + DGLKP R+VLF + N+ + VK A++ G M YH HG++S+ +
Sbjct: 713 RSIPSMVDGLKPGQRKVLFTCFKRND---KREVKVAQLAGSVAEMSSYH-HGEMSLMMTI 768
Query: 90 VRMAQSF--SLRCTLVDGQGNFGSI--DGDSAAAMRYTECRLNKISNELLIDLDKETIDF 145
+ +AQ+F S L+ G FG+ G +A+ RY L+ ++ L D T+ F
Sbjct: 769 INLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLLFPAKDDHTLKF 828
Query: 146 ISNYDGKEK-EPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGVLYVLHNPECS 204
+ YD ++ EP IP +LING+ GI G + IP ++ EV++ + ++ E
Sbjct: 829 L--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRLMDGEE-- 884
Query: 205 INDLIKIIPAPDFPTAGIIYG-LSSVHDGYYTGKGRVIIRAKTHIE 249
P P P+ G + + Y G V I T IE
Sbjct: 885 --------PLPMLPSYKNFKGTVEELAPNQYVISGEVAILNSTTIE 922
Score = 66 (28.3 bits), Expect = 2.0e-10, Sum P(5) = 2.0e-10
Identities = 54/238 (22%), Positives = 98/238 (41%)
Query: 255 NRTAIIIDELPY----QVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVIELKRN 310
N T I I ELP Q K+ +LE + EK I++ R+ + ++ V+++
Sbjct: 917 NSTTIEISELPIRTWTQTYKEQVLEPMLNGT-EKTPPLITDYREYHTDTTVKFVVKMTEE 975
Query: 311 EIPEIVLNKLYKQTQLQNTFGMNMLAL---VNGQPKLLNLKEILY-YFILHRKEV-IKRR 365
++ E L+K +LQ + N + L V K + +IL +F L K +++
Sbjct: 976 KLAEAERAGLHKVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILRDFFELRLKYYGLRKE 1035
Query: 366 TIFELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIG 425
+ + A E A + L ID +II +E +I+ ++ V
Sbjct: 1036 WLLGMLGA-ESAKLNNQARFILEKIDG--KIIIENKPKKELIKVLIQRGYDSDPVKAWKE 1092
Query: 426 FNKK--NYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYEN 481
+K + + ++ + + +D S +L MPL LT E+K + K N
Sbjct: 1093 AQQKVPDEEENEESDSEKETEKSDSATDSGPTFNYLLDMPLWYLTK-EKKDELCKLRN 1149
Score = 39 (18.8 bits), Expect = 2.0e-10, Sum P(5) = 2.0e-10
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 733 MRLEKKQKVIALLVSNNQKQSVL 755
+RLEKKQK V+ +KQ+ L
Sbjct: 1260 LRLEKKQKREP--VTKTKKQTTL 1280
Score = 38 (18.4 bits), Expect = 2.0e-10, Sum P(5) = 2.0e-10
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 1216 TMDFKVIKLDRKRN 1229
T+ FK IK +KRN
Sbjct: 1279 TLPFKPIKKAKKRN 1292
Score = 38 (18.4 bits), Expect = 2.0e-10, Sum P(5) = 2.0e-10
Identities = 12/50 (24%), Positives = 25/50 (50%)
Query: 633 KEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFS--NPRKSGI 680
K ++ ILP + KR P+ + + +KK + S + +P++ G+
Sbjct: 1204 KTQMVEILPSPSGKRVIPRVTEEMKAEAEKKIKKKIKSENTEGSPQEDGM 1253
>TIGR_CMR|BA_5132 [details] [associations]
symbol:BA_5132 "general stress protein 13" species:198094
"Bacillus anthracis str. Ames" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006950 "response to stress" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575 PRINTS:PR00681
PROSITE:PS50126 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0006412 GO:GO:0003723 GO:GO:0005840
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 HOGENOM:HOG000217052
KO:K07570 ProtClustDB:PRK08059 RefSeq:NP_847318.1
RefSeq:YP_021786.1 RefSeq:YP_031013.1 ProteinModelPortal:Q81K73
DNASU:1084499 EnsemblBacteria:EBBACT00000012496
EnsemblBacteria:EBBACT00000016095 EnsemblBacteria:EBBACT00000023270
GeneID:1084499 GeneID:2815743 GeneID:2848785 KEGG:ban:BA_5132
KEGG:bar:GBAA_5132 KEGG:bat:BAS4770 OMA:ETPDHTE
BioCyc:BANT260799:GJAJ-4848-MONOMER
BioCyc:BANT261594:GJ7F-5009-MONOMER Uniprot:Q81K73
Length = 114
Score = 159 (61.0 bits), Expect = 4.3e-10, P = 4.3e-10
Identities = 34/82 (41%), Positives = 54/82 (65%)
Query: 1335 LSFRYPRGTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEM-DWINKNVTPSKIVQLNDTV 1393
+S +Y G + GKVT + DYGAFV ++ +GLVHISE+ + K++ +++ DTV
Sbjct: 1 MSEQYTTGVVVTGKVTGIQDYGAFVALDAETQGLVHISEITNGYVKDI--HDFLKVGDTV 58
Query: 1394 EIMILEINEERRRISLGMKQCK 1415
E+ +L I+EE R++SL +K K
Sbjct: 59 EVKVLSIDEEHRKMSLSLKAAK 80
Score = 125 (49.1 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 28/75 (37%), Positives = 40/75 (53%)
Query: 1252 ETLKEGCTVKGVVKNITDYGAFIDLGG-IDGLLHITDIAWRRVKHPSEILTIGQDISTKI 1310
E G V G V I DYGAF+ L GL+HI++I VK + L +G + K+
Sbjct: 3 EQYTTGVVVTGKVTGIQDYGAFVALDAETQGLVHISEITNGYVKDIHDFLKVGDTVEVKV 62
Query: 1311 LKYDQEKNRVSLGMK 1325
L D+E ++SL +K
Sbjct: 63 LSIDEEHRKMSLSLK 77
Score = 111 (44.1 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 24/60 (40%), Positives = 38/60 (63%)
Query: 1441 DFGIFIGLDGNIDGLIHLSDLSWTDPGEEIIRNFKK-GDEIEAIILSIDVEKERISLGIK 1499
D+G F+ LD GL+H+S++ T+ + I +F K GD +E +LSID E ++SL +K
Sbjct: 20 DYGAFVALDAETQGLVHISEI--TNGYVKDIHDFLKVGDTVEVKVLSIDEEHRKMSLSLK 77
>TAIR|locus:2119946 [details] [associations]
symbol:emb2726 "embryo defective 2726" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003746 "translation elongation factor activity"
evidence=IEA;ISS] [GO:0006414 "translational elongation"
evidence=IEA;ISS] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA] [GO:0046686
"response to cadmium ion" evidence=IEP;RCA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009902 "chloroplast
relocation" evidence=RCA] [GO:0010027 "thylakoid membrane
organization" evidence=RCA] [GO:0016117 "carotenoid biosynthetic
process" evidence=RCA] [GO:0019288 "isopentenyl diphosphate
biosynthetic process, mevalonate-independent pathway" evidence=RCA]
[GO:0034660 "ncRNA metabolic process" evidence=RCA] [GO:0042744
"hydrogen peroxide catabolic process" evidence=RCA] HAMAP:MF_00050
InterPro:IPR000449 InterPro:IPR001816 InterPro:IPR003029
InterPro:IPR009060 InterPro:IPR014039 InterPro:IPR018101
Pfam:PF00575 Pfam:PF00627 Pfam:PF00889 PROSITE:PS01126
PROSITE:PS01127 PROSITE:PS50126 GO:GO:0046686 GO:GO:0009570
EMBL:CP002687 EMBL:AL078470 EMBL:AL161574 GO:GO:0009941
GO:GO:0003746 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
SUPFAM:SSF46934 InterPro:IPR022967 SMART:SM00316 KO:K02357
Gene3D:3.30.479.20 PANTHER:PTHR11741 SUPFAM:SSF54713
TIGRFAMs:TIGR00116 HSSP:P43895 EMBL:AY056792 IPI:IPI00541725
PIR:T08961 RefSeq:NP_567820.1 UniGene:At.21764
ProteinModelPortal:Q9SZD6 SMR:Q9SZD6 STRING:Q9SZD6 PRIDE:Q9SZD6
ProMEX:Q9SZD6 EnsemblPlants:AT4G29060.1 GeneID:829027
KEGG:ath:AT4G29060 TAIR:At4g29060 HOGENOM:HOG000244107
InParanoid:Q9SZD6 OMA:DDLAMQV PhylomeDB:Q9SZD6
Genevestigator:Q9SZD6 Uniprot:Q9SZD6
Length = 953
Score = 149 (57.5 bits), Expect = 6.3e-10, Sum P(3) = 6.3e-10
Identities = 31/81 (38%), Positives = 50/81 (61%)
Query: 1252 ETLKEGCTVKGVVKNITDYGAFIDLGGI-DGLLHITDIAWRRVKHPSEILTIGQDISTKI 1310
E L G T G V+ I +GAF+D G DGL+H++ ++ VK S ++TIGQ++ ++
Sbjct: 131 EELVPGATFTGKVRAIQPFGAFVDFGAFTDGLVHVSQLSDNFVKDVSSVVTIGQEVKVRL 190
Query: 1311 LKYDQEKNRVSLGMKQLGIDP 1331
++ D E R+SL M++ DP
Sbjct: 191 VEADIESKRISLTMRE-NDDP 210
Score = 118 (46.6 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 28/78 (35%), Positives = 46/78 (58%)
Query: 1342 GTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEM-DWINKNVTPSKIVQLNDTVEIMILEI 1400
G GKV + +GAFV+ +GLVH+S++ D K+V S +V + V++ ++E
Sbjct: 136 GATFTGKVRAIQPFGAFVDFGAFTDGLVHVSQLSDNFVKDV--SSVVTIGQEVKVRLVEA 193
Query: 1401 NEERRRISLGMKQCKDNP 1418
+ E +RISL M++ D P
Sbjct: 194 DIESKRISLTMRENDDPP 211
Score = 100 (40.3 bits), Expect = 6.3e-10, Sum P(3) = 6.3e-10
Identities = 28/89 (31%), Positives = 46/89 (51%)
Query: 1334 GLSFRYPRGTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEM--DWINKNVTPSKIVQLND 1391
G + ++ +G L G V NLT GAF+ I +G EG + +E D I + +Q
Sbjct: 240 GFNSKFAKGQMLDGVVKNLTRSGAFITIGEGEEGFLPTAEEADDGIGSMMMGGSSLQAGQ 299
Query: 1392 TVEIMILEINEERRRISLGMKQCKDNPWE 1420
V++ +L I R R++L MK+ D ++
Sbjct: 300 EVKVRVLRI--ARGRVTLTMKEEDDGKFD 326
Score = 75 (31.5 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 19/55 (34%), Positives = 32/55 (58%)
Query: 1495 SLGIKQLEGDPFNNYVNINDKGSLVNGIIKSIDTNKGAIIQLSNEVEGYLRISEE 1549
S G Q +G+ FN+ KG +++G++K++ T GA I + EG+L +EE
Sbjct: 230 SKGGGQRKGEGFNSKFA---KGQMLDGVVKNL-TRSGAFITIGEGEEGFLPTAEE 280
Score = 39 (18.8 bits), Expect = 6.3e-10, Sum P(3) = 6.3e-10
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 638 VILPLSNNKRDFPKNNYVFM 657
++LPLS + R FP + F+
Sbjct: 48 LVLPLSTSLRLFPTHGRQFV 67
>TAIR|locus:2095203 [details] [associations]
symbol:AT3G23700 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0009409 "response to cold" evidence=IEP;RCA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0006098 "pentose-phosphate
shunt" evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
[GO:0009773 "photosynthetic electron transport in photosystem I"
evidence=RCA] [GO:0009902 "chloroplast relocation" evidence=RCA]
[GO:0010027 "thylakoid membrane organization" evidence=RCA]
[GO:0015995 "chlorophyll biosynthetic process" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0034660 "ncRNA
metabolic process" evidence=RCA] [GO:0042742 "defense response to
bacterium" evidence=RCA] [GO:0042793 "transcription from plastid
promoter" evidence=RCA] InterPro:IPR003029 Pfam:PF00575
PROSITE:PS50126 GO:GO:0005634 GO:GO:0009570 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0009409 EMBL:AP000377 GO:GO:0003723
GO:GO:0005840 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 UniGene:At.6667
eggNOG:COG0539 EMBL:AY049283 EMBL:AY139796 IPI:IPI00535895
RefSeq:NP_566737.1 ProteinModelPortal:Q9LK47 SMR:Q9LK47
IntAct:Q9LK47 STRING:Q9LK47 PaxDb:Q9LK47 PRIDE:Q9LK47
EnsemblPlants:AT3G23700.1 GeneID:821951 KEGG:ath:AT3G23700
TAIR:At3g23700 HOGENOM:HOG000264640 InParanoid:Q9LK47 OMA:GLYHLTG
PhylomeDB:Q9LK47 ProtClustDB:CLSN2688704 Genevestigator:Q9LK47
Uniprot:Q9LK47
Length = 392
Score = 176 (67.0 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 51/189 (26%), Positives = 87/189 (46%)
Query: 1158 ASWLSLEKAMESGEIITGTINGKVKGGLTVLTNGLKAFLP-GSLVDIRPVKD-------- 1208
+ W + + +SG+ G + G GGL + + L FLP L R K+
Sbjct: 95 SDWKTAKAYCKSGDTFEGEVQGFNGGGLLIRFHSLVGFLPYPQLSPSRSCKEPQKSIHEI 154
Query: 1209 TTPFEGKTMDFKVIKLDRKRNNVVLSHRAVIEESMGEERQKLIETLKEGCTVKGVVKNIT 1268
G + KV++ D + ++LS + + K + + G G V ++
Sbjct: 155 AKTLVGSKLPVKVVQADEENRKLILSEKLALWP-------KYSQNVNVGDVFNGRVGSVE 207
Query: 1269 DYGAFIDLGGIDGLLHIT------DIAWRRVKHPSEILTIGQDISTKILKYDQEKNRVSL 1322
DYGAFI L DGL H+T +++W V+ ++L G ++ + D+EK+R++L
Sbjct: 208 DYGAFIHLRFDDGLYHLTGLVHVSEVSWDYVQDVRDVLRDGDEVRVIVTNIDKEKSRITL 267
Query: 1323 GMKQLGIDP 1331
+KQL DP
Sbjct: 268 SIKQLEDDP 276
Score = 160 (61.4 bits), Expect = 5.9e-08, P = 5.9e-08
Identities = 48/176 (27%), Positives = 87/176 (49%)
Query: 1255 KEGCTVKGVVKNITDYGAFIDLGGIDGLLHITDIA-WRRVKHPSEIL------TIGQDIS 1307
K G T +G V+ G I + G L ++ R K P + + +G +
Sbjct: 105 KSGDTFEGEVQGFNGGGLLIRFHSLVGFLPYPQLSPSRSCKEPQKSIHEIAKTLVGSKLP 164
Query: 1308 TKILKYDQEKNRVSLGMKQLGIDPWIGLSFRYPRGTRLLGKVTNLTDYGAFVEI--EKGI 1365
K+++ D+E ++ L K L + W S G G+V ++ DYGAF+ + + G+
Sbjct: 165 VKVVQADEENRKLILSEK-LAL--WPKYSQNVNVGDVFNGRVGSVEDYGAFIHLRFDDGL 221
Query: 1366 ---EGLVHISEMDWINKNVTPSKIVQLNDTVEIMILEINEERRRISLGMKQCKDNP 1418
GLVH+SE+ W + +++ D V +++ I++E+ RI+L +KQ +D+P
Sbjct: 222 YHLTGLVHVSEVSW-DYVQDVRDVLRDGDEVRVIVTNIDKEKSRITLSIKQLEDDP 276
Score = 159 (61.0 bits), Expect = 7.5e-08, P = 7.5e-08
Identities = 49/170 (28%), Positives = 82/170 (48%)
Query: 1395 IMILEINEERRRISLGMKQCKDNPWENFXXXXXXXXXXXXXXXXXTDFGIFIGL---DG- 1450
+ +++ +EE R++ L K W + D+G FI L DG
Sbjct: 165 VKVVQADEENRKLILSEKLAL---WPKYSQNVNVGDVFNGRVGSVEDYGAFIHLRFDDGL 221
Query: 1451 -NIDGLIHLSDLSWTDPGEEIIRNFKKGDEIEAIILSIDVEKERISLGIKQLEGDPFNNY 1509
++ GL+H+S++SW D +++ + GDE+ I+ +ID EK RI+L IKQLE DP
Sbjct: 222 YHLTGLVHVSEVSW-DYVQDVRDVLRDGDEVRVIVTNIDKEKSRITLSIKQLEDDPLLET 280
Query: 1510 VN-INDKGSLVNGIIKSIDTNKGAIIQLSNEVEGYLR-ISEEDNKHEKKL 1557
++ + K S S+ +N G I+ +E L + +ED K+
Sbjct: 281 LDKVILKDSSTGS--PSLSSNNGDTIEPLPGLETILEELLKEDGIEAVKI 328
>UNIPROTKB|P11388 [details] [associations]
symbol:TOP2A "DNA topoisomerase 2-alpha" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0040016
"embryonic cleavage" evidence=IEA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000712 "resolution of meiotic recombination intermediates"
evidence=IBA] [GO:0000795 "synaptonemal complex" evidence=IBA]
[GO:0000819 "sister chromatid segregation" evidence=IBA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IDA;IBA] [GO:0006312
"mitotic recombination" evidence=IBA] [GO:0009295 "nucleoid"
evidence=IBA] [GO:0048015 "phosphatidylinositol-mediated signaling"
evidence=NAS] [GO:0006260 "DNA replication" evidence=NAS]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0043234 "protein
complex" evidence=IPI] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008022 "protein C-terminus binding"
evidence=IPI] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0000228 "nuclear chromosome" evidence=IDA]
[GO:0005814 "centriole" evidence=IDA] [GO:0042826 "histone
deacetylase binding" evidence=IPI] [GO:0007059 "chromosome
segregation" evidence=IMP] [GO:0009330 "DNA topoisomerase complex
(ATP-hydrolyzing)" evidence=IDA] [GO:0019899 "enzyme binding"
evidence=IPI] [GO:0030263 "apoptotic chromosome condensation"
evidence=IDA] [GO:0019035 "viral integration complex" evidence=NAS]
[GO:0045070 "positive regulation of viral genome replication"
evidence=IMP] [GO:0045870 "positive regulation of retroviral genome
replication" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0042803 "protein homodimerization activity"
evidence=IPI] [GO:0046982 "protein heterodimerization activity"
evidence=IPI] [GO:0006266 "DNA ligation" evidence=IDA] [GO:0008144
"drug binding" evidence=IDA] [GO:0006974 "response to DNA damage
stimulus" evidence=IDA] [GO:0043065 "positive regulation of
apoptotic process" evidence=IDA] [GO:0005080 "protein kinase C
binding" evidence=IPI] [GO:0006281 "DNA repair" evidence=NAS]
[GO:0043130 "ubiquitin binding" evidence=IMP] [GO:0008301 "DNA
binding, bending" evidence=IDA] [GO:0000287 "magnesium ion binding"
evidence=IDA] [GO:0000278 "mitotic cell cycle" evidence=TAS]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR003594
InterPro:IPR012542 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
Pfam:PF08070 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0005737 Reactome:REACT_115566 GO:GO:0005654
GO:GO:0005730 GO:GO:0042493 GO:GO:0000287 GO:GO:0008144
GO:GO:0007568 EMBL:CH471152 GO:GO:0043565 GO:GO:0006281
GO:GO:0045944 GO:GO:0003682 GO:GO:0040016 GO:GO:0006261
DrugBank:DB01204 GO:GO:0008301 GO:GO:0043065 GO:GO:0030263
DrugBank:DB00537 GO:GO:0048015 Gene3D:3.30.565.10 SUPFAM:SSF55874
DrugBank:DB01044 DrugBank:DB04967 GO:GO:0006266 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
GO:GO:0043130 GO:GO:0009330 GO:GO:0070683 GO:GO:0000712
DrugBank:DB00445 GO:GO:0071107 DrugBank:DB00467 DrugBank:DB01137
DrugBank:DB00978 DrugBank:DB01059 DrugBank:DB01165 DrugBank:DB00487
DrugBank:DB00444 DrugBank:DB00997 DrugBank:DB00773 GO:GO:0000795
GO:GO:0006265 GO:GO:0043566 DrugBank:DB00276 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 EMBL:AC080112
KO:K03164 CTD:7153 HOVERGEN:HBG052998 EMBL:J04088 EMBL:AF071747
EMBL:AF071738 EMBL:AF071739 EMBL:AF071740 EMBL:AF071741
EMBL:AF071742 EMBL:AF071743 EMBL:AF071744 EMBL:AF071745
EMBL:AF071746 EMBL:AJ011741 EMBL:AJ011742 EMBL:AJ011743
EMBL:AJ011744 EMBL:AJ011745 EMBL:AJ011746 EMBL:AJ011747
EMBL:AJ011748 EMBL:AJ011749 EMBL:AJ011750 EMBL:AJ011751
EMBL:AJ011752 EMBL:AJ011753 EMBL:AJ011754 EMBL:AJ011755
EMBL:AJ011756 EMBL:AJ011757 EMBL:AJ011758 EMBL:AF285157
EMBL:AF285158 EMBL:BC140791 EMBL:AF285159 EMBL:AF069522
EMBL:AF064590 IPI:IPI00414101 IPI:IPI00478232 IPI:IPI00879004
IPI:IPI01011132 PIR:A40493 RefSeq:NP_001058.2 UniGene:Hs.156346
PDB:1LWZ PDB:1ZXM PDB:1ZXN PDB:4FM9 PDBsum:1LWZ PDBsum:1ZXM
PDBsum:1ZXN PDBsum:4FM9 ProteinModelPortal:P11388 SMR:P11388
DIP:DIP-33887N IntAct:P11388 MINT:MINT-98770 STRING:P11388
PhosphoSite:P11388 DMDM:13959709 UCD-2DPAGE:P11388 PaxDb:P11388
PRIDE:P11388 Ensembl:ENST00000423485 GeneID:7153 KEGG:hsa:7153
UCSC:uc002huq.3 GeneCards:GC17M038544 H-InvDB:HIX0013797
HGNC:HGNC:11989 HPA:CAB002448 HPA:HPA006458 HPA:HPA026773
MIM:126430 neXtProt:NX_P11388 PharmGKB:PA354 OrthoDB:EOG4KWJS0
BRENDA:5.99.1.3 BindingDB:P11388 ChEMBL:CHEMBL1806 DrugBank:DB00380
DrugBank:DB04576 DrugBank:DB01177 DrugBank:DB00218 DrugBank:DB01179
DrugBank:DB01208 DrugBank:DB00685 DrugBank:DB00385
EvolutionaryTrace:P11388 GenomeRNAi:7153 NextBio:27992
ArrayExpress:P11388 Bgee:P11388 CleanEx:HS_TOP2A
Genevestigator:P11388 GO:GO:0045870 Uniprot:P11388
Length = 1531
Score = 215 (80.7 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 120/472 (25%), Positives = 204/472 (43%)
Query: 32 RALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGET--MGKYHPHGDVSIYDAL 89
R++P + DGLKP R+VLF + N+ + VK A++ G M YH HG++S+ +
Sbjct: 713 RSIPSMVDGLKPGQRKVLFTCFKRND---KREVKVAQLAGSVAEMSSYH-HGEMSLMMTI 768
Query: 90 VRMAQSF--SLRCTLVDGQGNFGSI--DGDSAAAMRYTECRLNKISNELLIDLDKETIDF 145
+ +AQ+F S L+ G FG+ G +A+ RY L+ ++ L D T+ F
Sbjct: 769 INLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSSLARLLFPPKDDHTLKF 828
Query: 146 ISNYDGKEK-EPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGVLYVLHNPECS 204
+ YD ++ EP IP +LING+ GI G + IP ++ E+++ + ++ E
Sbjct: 829 L--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREIVNNIRRLMDGEE-- 884
Query: 205 INDLIKIIPAPDFPTAGIIYG-LSSVHDGYYTGKGRVIIRAKTHIEEFNRENRTAIIIDE 263
P P P+ G + + Y G V I T IE RT
Sbjct: 885 --------PLPMLPSYKNFKGTIEELAPNQYVISGEVAILNSTTIEISELPVRTWT--QT 934
Query: 264 LPYQVNKKSL--LEKISQLVKEKKLECISNLRDESDKSGMRIVIELKRNEIPEIVLNKLY 321
QV + L EK L+ + + E + D + K +++ E K E + L+K++
Sbjct: 935 YKEQVLEPMLNGTEKTPPLITDYR-EYHT---DTTVKFVVKMTEE-KLAEAERVGLHKVF 989
Query: 322 K-QTQLQNTFGMNMLALVNGQPKLLNLKEILY-YFILHRKEV-IKRRTIFELRKAREYAH 378
K QT L M + V K + +IL +F L K +++ + + A E A
Sbjct: 990 KLQTSLTCN-SMVLFDHVGCLKKYDTVLDILRDFFELRLKYYGLRKEWLLGMLGA-ESAK 1047
Query: 379 ILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIGFNKK--NYNTISK 436
+ L ID +II +E +I+ ++ V +K + +
Sbjct: 1048 LNNQARFILEKIDG--KIIIENKPKKELIKVLIQRGYDSDPVKAWKEAQQKVPDEEENEE 1105
Query: 437 INNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVID 488
+N + + +D S +L MPL LT E+K + + N ++ +D
Sbjct: 1106 SDNEKETEKSDSVTDSGPTFNYLLDMPLWYLTK-EKKDELCRLRNEKEQELD 1156
Score = 38 (18.4 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 1216 TMDFKVIKLDRKRN 1229
T+ FK IK +KRN
Sbjct: 1279 TLAFKPIKKGKKRN 1292
Score = 37 (18.1 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 717 ENSVRAMGRSARGVIGMRLEKKQK 740
E S + G G + RLEKKQK
Sbjct: 1245 EGSPQEDGVELEG-LKQRLEKKQK 1267
>SGD|S000004842 [details] [associations]
symbol:RRP5 "RNA binding protein involved in synthesis of
both 18S and 5.8S rRNAs" species:4932 "Saccharomyces cerevisiae"
[GO:0030686 "90S preribosome" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0032040 "small-subunit processome"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0000480 "endonucleolytic cleavage in 5'-ETS of
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR011990
Pfam:PF00575 PROSITE:PS50126 SMART:SM00386 SGD:S000004842
GO:GO:0005730 GO:GO:0008266 EMBL:BK006946 Gene3D:1.25.40.10
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:Z49939
GO:GO:0030686 GO:GO:0032040 GO:GO:0000447 GO:GO:0000472
InterPro:IPR022967 SMART:SM00316 GO:GO:0000464 GO:GO:0000480
eggNOG:COG0539 KO:K14792 GeneTree:ENSGT00390000012228
HOGENOM:HOG000167551 OrthoDB:EOG4N07P1 PIR:S57596
RefSeq:NP_013956.1 ProteinModelPortal:Q05022 SMR:Q05022
DIP:DIP-6535N IntAct:Q05022 MINT:MINT-680694 STRING:Q05022
PaxDb:Q05022 PeptideAtlas:Q05022 EnsemblFungi:YMR229C GeneID:855269
KEGG:sce:YMR229C CYGD:YMR229c OMA:FYGNVRG NextBio:978879
Genevestigator:Q05022 GermOnline:YMR229C Uniprot:Q05022
Length = 1729
Score = 188 (71.2 bits), Expect = 3.1e-08, Sum P(3) = 3.1e-08
Identities = 92/363 (25%), Positives = 160/363 (44%)
Query: 1162 SLEKAMESGEIITGTINGKVKGGLTV-LTNGLKAFLPGSLVDIRP--------VKDTTPF 1212
SLE+ + G+ +TG +N L + ++ LKA + SL+D+ ++ P
Sbjct: 996 SLEE-INIGQELTGFVNNSSGNHLWLTISPVLKARI--SLLDLADNDSNFSENIESVFPL 1052
Query: 1213 EGKTMDFKVIKLDRKRNNVVLSHRAVIEESMGEERQKLIETLKEGCTVKGVVKNITDYGA 1272
G + KV +DR+ V ++ ++ +M T+K G + G V I +
Sbjct: 1053 -GSALQVKVASIDREHGFVNAIGKSHVDINMS--------TIKVGDELPGRVLKIAEKYV 1103
Query: 1273 FIDLGG-IDGLLHITDIA---WRRVKHPSEILTIGQDISTKILKYDQEKNRVSLGMKQLG 1328
+DLG + G+ ITD +K E I I T +L D++ ++ L ++
Sbjct: 1104 LLDLGNKVTGISFITDALNDFSLTLKEAFED-KINNVIPTTVLSVDEQNKKIELSLRPAT 1162
Query: 1329 IDPWIGLSFR-YPRGTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEM------DWINKNV 1381
S +G + G V N+ D G FV + + +E V +S++ +W K
Sbjct: 1163 AKTRSIKSHEDLKQGEIVDGIVKNVNDKGIFVYLSRKVEAFVPVSKLSDSYLKEW-KKFY 1221
Query: 1382 TPSKIVQLNDTVEIMILEINEERRRISLGMKQCKDNPWENFXXXXXXXXXXXX---XXXX 1438
P + V L V +E RISL +++ + N
Sbjct: 1222 KPMQYV-LGKVVTC------DEDSRISLTLRESEINGDLKVLKTYSDIKAGDVFEGTIKS 1274
Query: 1439 XTDFGIFIGLDG--NIDGLIHLSDLSWTDPGEEIIRNFKKGDEIEAIILSIDVEKERISL 1496
TDFG+F+ LD N+ GL H+++++ P E++ F GD ++AI+L + EK++ISL
Sbjct: 1275 VTDFGVFVKLDNTVNVTGLAHITEIADKKP-EDLSALFGVGDRVKAIVLKTNPEKKQISL 1333
Query: 1497 GIK 1499
+K
Sbjct: 1334 SLK 1336
Score = 182 (69.1 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 63/256 (24%), Positives = 119/256 (46%)
Query: 1083 MRSGEVISAEVIGLDRNFVIINADLKSEAFIPIEEFKND-----NGELEVKIGDFVSVAI 1137
++ G+ + V+ + +V+++ K I + ND E KI + + +
Sbjct: 1085 IKVGDELPGRVLKIAEKYVLLDLGNKVTGISFITDALNDFSLTLKEAFEDKINNVIPTTV 1144
Query: 1138 ESLENGFGDTILSRDKAKRLASWLSLEKAMESGEIITGTI-NGKVKGGLTVLTNGLKAFL 1196
S++ LS A + + ++ GEI+ G + N KG L+ ++AF+
Sbjct: 1145 LSVDEQNKKIELSLRPATAKTRSIKSHEDLKQGEIVDGIVKNVNDKGIFVYLSRKVEAFV 1204
Query: 1197 PGSLVDIRPVKDTTPFEGKTMDF---KVIKLDRKRNNVVLSHRAVIEESMGEERQ-KLIE 1252
P S + +K+ F K M + KV+ D + + L+ R E G+ + K
Sbjct: 1205 PVSKLSDSYLKEWKKFY-KPMQYVLGKVVTCDED-SRISLTLRE--SEINGDLKVLKTYS 1260
Query: 1253 TLKEGCTVKGVVKNITDYGAFIDLGG---IDGLLHITDIAWRRVKHPSEILTIGQDISTK 1309
+K G +G +K++TD+G F+ L + GL HIT+IA ++ + S + +G +
Sbjct: 1261 DIKAGDVFEGTIKSVTDFGVFVKLDNTVNVTGLAHITEIADKKPEDLSALFGVGDRVKAI 1320
Query: 1310 ILKYDQEKNRVSLGMK 1325
+LK + EK ++SL +K
Sbjct: 1321 VLKTNPEKKQISLSLK 1336
Score = 56 (24.8 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 52/237 (21%), Positives = 109/237 (45%)
Query: 269 NKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVIELKRNEIPEIVLNKLYKQTQLQN 328
N+K LL + VKE+K + SN+ D D S ++ +L I + + K K+ QL
Sbjct: 855 NQKFLLSLKAPKVKEEKKKVESNIEDPVDSS-IKSWDDLSIGSIVKAKI-KSVKKNQLNV 912
Query: 329 TFGMNMLALVNGQPKLLNLKEILYYFILHRKEVIKRRTIFELRKAREYAH--ILEGLTIA 386
N+ +G+ + + + Y I +K+ + ++ K + + + +
Sbjct: 913 ILAANL----HGRVDIAEVFDT-YEEITDKKQPLSNYKKDDVIKVKIIGNHDVKSHKFLP 967
Query: 387 LTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVS---KIIGF-NKKNYN----TISKI- 437
+T+ + ++ + P E K+K + T +L +++ ++ GF N + N TIS +
Sbjct: 968 ITHKISKASVLELSMKPSELKSKEVH-TKSLEEINIGQELTGFVNNSSGNHLWLTISPVL 1026
Query: 438 -NNISKLQ--NNDMYKLSDIQAQEILKMPLQ-RLTNMEQKKIINKYENVI-KKVIDL 489
IS L +ND +I++ L LQ ++ +++++ + + N I K +D+
Sbjct: 1027 KARISLLDLADNDSNFSENIESVFPLGSALQVKVASIDRE---HGFVNAIGKSHVDI 1080
Score = 50 (22.7 bits), Expect = 3.1e-08, Sum P(3) = 3.1e-08
Identities = 33/159 (20%), Positives = 68/159 (42%)
Query: 1020 SMSDLLI-NLIKRDIRDKTRNLSPLKCPEQAHLLNTSKMNINQVVNQILDCFATLFKESL 1078
S DL I +++K I+ +N Q +++ + ++ + ++ D + + +
Sbjct: 888 SWDDLSIGSIVKAKIKSVKKN--------QLNVILAANLHGRVDIAEVFDTYEEITDKKQ 939
Query: 1079 LRHDMRSGEVISAEVIGLDRNFVIINADLKSEAFIPIEE--FKNDNGELEVKIGDFVS-- 1134
+ + +VI ++IG N D+KS F+PI K EL +K + S
Sbjct: 940 PLSNYKKDDVIKVKIIG--------NHDVKSHKFLPITHKISKASVLELSMKPSELKSKE 991
Query: 1135 VAIESLEN-GFGDTI---LSRDKAKRLASWLSLEKAMES 1169
V +SLE G + ++ L WL++ +++
Sbjct: 992 VHTKSLEEINIGQELTGFVNNSSGNHL--WLTISPVLKA 1028
Score = 41 (19.5 bits), Expect = 3.1e-08, Sum P(3) = 3.1e-08
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 516 SHKKNIRRSEIILNAINPSTEDLIASQDMVITLSNLGYIKS 556
S KK+ ++ I L I PS+ ++ A +D+V + S +KS
Sbjct: 227 STKKS-KKKRIELT-IEPSSVNIYADEDLVKSTSIQCAVKS 265
>RGD|1304933 [details] [associations]
symbol:Pdcd11 "programmed cell death 11" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005829 "cytosol" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA;ISO] InterPro:IPR003029
InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126
PROSITE:PS50293 SMART:SM00386 RGD:1304933 GO:GO:0005829
GO:GO:0005634 GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 CTD:22984 KO:K14792
OrthoDB:EOG4XKV63 GeneTree:ENSGT00390000012228 IPI:IPI00870468
RefSeq:NP_001101074.2 UniGene:Rn.136636 ProteinModelPortal:D3ZNI3
Ensembl:ENSRNOT00000027512 GeneID:309458 KEGG:rno:309458
NextBio:660838 ArrayExpress:D3ZNI3 Uniprot:D3ZNI3
Length = 1876
Score = 177 (67.4 bits), Expect = 8.5e-09, P = 8.5e-09
Identities = 100/465 (21%), Positives = 199/465 (42%)
Query: 1083 MRSGEVISAEVIGL-DRNFVI-INADLKSEAFIPIEE----FKNDNGELEVKIGDFVSVA 1136
+R G +++ V L D +++ I D + AF+ +++ + N + K+G +++
Sbjct: 184 LRPGMLLTGTVSSLEDHGYLVDIGVD-GTRAFLSLQKAQEYIRQKNKGAKFKVGQYLTCV 242
Query: 1137 IESLENGFGDTILSRDKAKRLASWLSLEKAMESGEIITGTINGKVKGGLTVLTN-GLK-- 1193
+E L++ G LS + ++ +++ + E++ ++ G + V+ + +T GL+
Sbjct: 243 VEELKSNGGVVSLSVEHSQVSSAFATEEQSWNLNNLLPGLV---VRAQVQKVTQFGLQLN 299
Query: 1194 --AFLPGSLVD---IRPVKDTTPFEGKTMDFKVIKLDRKRNNVVLSHRAVIEESMGEERQ 1248
F G LVD + P K + +T+ ++ + + V LS R + G
Sbjct: 300 FLTFFTG-LVDFMHLEPKKMGSYSSKQTVKACILCVHPRTRVVRLSLRPIFLHP-GRPLT 357
Query: 1249 KL----IETLKEGCTVKGVVKNITDYGAFIDL-GGIDGLLHITDIAWRRVKHPSEILTIG 1303
++ + T+ + +V+G + GA L G+ ++ ++ + +E +G
Sbjct: 358 RISYQQLGTVLDDASVEGFFEKA---GAIFRLRDGVLAYARLSHLSDSKKAFSAEAFKLG 414
Query: 1304 QDISTKILKYDQEKNRVSLGM-KQLGIDPWIGLSFRYPRGTRLLGKVTNLTDYGAFVEIE 1362
+I+ Y Q L + K + P++ GT + GKV L +G V++
Sbjct: 415 STHRCRIIDYSQMDELALLSLRKSIIAAPFLRYQ-DIKTGTIVKGKVLALKPFGMLVKVG 473
Query: 1363 KGIEGLVHISEM-DWINKNVTPSKIVQLNDTVEIMILEINEERRRISLGMKQC---KDNP 1418
+ + GLV + D + KN P K D V+ +L + E +++ + +K+ P
Sbjct: 474 EQMRGLVPSMHLADIMMKN--PEKKFNTGDEVKCRVLLCDPEAKKLIMTLKKTLVTSKLP 531
Query: 1419 WENFXXXXXXXXXXXXXXXXXTDFGIFIGLDGNIDGLIHLSDLSWTD-PGEEIIRNFKKG 1477
D+G + ++ GL+ +LS P E R F G
Sbjct: 532 AITCYEDAKPGLQTHGVIIRVKDYGCLVKFYNDVQGLVPKHELSAQHIPDPE--RVFYTG 589
Query: 1478 DEIEAIILSIDVEKERISLGIKQLEG-DPFNNYV-NINDKGSLVN 1520
++ +L+ + KER+ L K L G +P + V N KGS VN
Sbjct: 590 QVVKVAVLNCEPSKERMLLSFKLLSGSEPKDESVKNSKKKGSTVN 634
Score = 141 (54.7 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 112/518 (21%), Positives = 205/518 (39%)
Query: 1130 GDFVSVAIESL---ENGFGDTILSRDKAKRLASWLSLEKAMESGEIITGTINGKVKGG-- 1184
G V + SL E+G LS + KR+ LS E A+ G ++TGT++ G
Sbjct: 146 GMLVRCVVSSLDVTESGKKSVKLSVNP-KRVNKVLSAE-ALRPGMLLTGTVSSLEDHGYL 203
Query: 1185 LTVLTNGLKAFLPGSLVD--IRPVKDTTPFE-GKTMDFKVIKLDRKRNNVVLS--HRAVI 1239
+ + +G +AFL IR F+ G+ + V +L V LS H V
Sbjct: 204 VDIGVDGTRAFLSLQKAQEYIRQKNKGAKFKVGQYLTCVVEELKSNGGVVSLSVEHSQVS 263
Query: 1240 EESMGEERQKLIETLKEGCTVKGVVKNITDYGAFID-LGGIDGLLHITDIAWRRVKHPSE 1298
EE+ + L G V+ V+ +T +G ++ L GL+ + +++ S
Sbjct: 264 SAFATEEQSWNLNNLLPGLVVRAQVQKVTQFGLQLNFLTFFTGLVDFMHLEPKKMGSYSS 323
Query: 1299 ILTIGQDISTKILKYDQEKNRVSLGMKQLGIDPWIGLS-FRYPR-GTRLL-GKVTNLTDY 1355
Q + IL V L ++ + + P L+ Y + GT L V +
Sbjct: 324 ----KQTVKACILCVHPRTRVVRLSLRPIFLHPGRPLTRISYQQLGTVLDDASVEGFFEK 379
Query: 1356 -GAFVEIEKGIEGLVHISEMDWINKNVTPSKIVQLNDTVEIMILEINE--ERRRISLGMK 1412
GA + G+ +S + +K ++ +L T I++ ++ E +SL K
Sbjct: 380 AGAIFRLRDGVLAYARLSHLS-DSKKAFSAEAFKLGSTHRCRIIDYSQMDELALLSL-RK 437
Query: 1413 QCKDNPWENFXXXXXXXXXXXXXXXXXTDFGIFIGLDGNIDGLI---HLSDLSWTDPGEE 1469
P+ + FG+ + + + GL+ HL+D+ +P ++
Sbjct: 438 SIIAAPFLRYQDIKTGTIVKGKVLALKP-FGMLVKVGEQMRGLVPSMHLADIMMKNPEKK 496
Query: 1470 IIRNFKKGDEIEAIILSIDVEKERISLGIKQ-LEGDPFNNYVNINDK--GSLVNGIIKSI 1526
F GDE++ +L D E +++ + +K+ L D G +G+I +
Sbjct: 497 ----FNTGDEVKCRVLLCDPEAKKLIMTLKKTLVTSKLPAITCYEDAKPGLQTHGVIIRV 552
Query: 1527 DTNKGAIIQLSNEVEGYLRISEEDNKH----EKKLKIGENIDVLTVLIDHKTRYIQLSFX 1582
+ G +++ N+V+G + E +H E+ G+ + V + + + LSF
Sbjct: 553 K-DYGCLVKFYNDVQGLVPKHELSAQHIPDPERVFYTGQVVKVAVLNCEPSKERMLLSFK 611
Query: 1583 XXXXXXXXXLLTSINANTISGTTNLGLILKAE-LEKIK 1619
N+ T N G ++ + LEK K
Sbjct: 612 LLSGSEPKDESVK-NSKKKGSTVNTGQLVDVKVLEKTK 648
>UNIPROTKB|G5E5C4 [details] [associations]
symbol:PDCD11 "Protein RRP5 homolog" species:9913 "Bos
taurus" [GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR003029
InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126
PROSITE:PS50293 SMART:SM00386 GO:GO:0005829 GO:GO:0005634
GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
UniGene:Bt.23141 OMA:LHLADIY GeneTree:ENSGT00390000012228
EMBL:DAAA02059036 EMBL:DAAA02059037 Ensembl:ENSBTAT00000012818
Uniprot:G5E5C4
Length = 1874
Score = 158 (60.7 bits), Expect = 9.7e-09, Sum P(2) = 9.7e-09
Identities = 95/447 (21%), Positives = 183/447 (40%)
Query: 1083 MRSGEVISAEVIGLDRNFVIINADLK-SEAFIPIEE----FKNDNGELEVKIGDFVSVAI 1137
++ G +++ V L+ + +++ + + AF+P+++ + N ++K+G +++ I
Sbjct: 184 LKPGMLLTGTVSSLEDHGYLVDIGVSGARAFLPLQKAQEYIRQKNKGAKLKVGQYLNCLI 243
Query: 1138 ESLENGFGDTILSRDKAKRLASWLSLEKAMESGEIITG-TINGKVKGGLTVLTNGLK--A 1194
E ++ G LS ++ A+ + E++ ++ G + +V+ +T L LK +
Sbjct: 244 EEVKGSRGVVTLSIGHSEVSAAIATEEQSWTLNSLLPGLVVKAQVQK-VTPLGLTLKFLS 302
Query: 1195 FLPGSLVD---IRPVKDTTPFEGKTMDFKVIKLDRKRNNVVLSHRAVIEESMGEERQKLI 1251
F G LVD + P K T F + + V+ + + V LS R V + G +L+
Sbjct: 303 FFSG-LVDFMHLDPKKAGTYFSNQQVRACVLCVHPRTRAVRLSLRPVFLQP-GRPLTRLL 360
Query: 1252 ETLKEGCTVKGVVKNITDYGAFIDLGGIDGLLHITDIAWRRVKHPS--------EILTIG 1303
C G V + F G L +A+ R H S E G
Sbjct: 361 ------CQQLGAVLDDVPVQGFFGSAGATFKLKDGTLAYARRNHLSNSKKTFKPEAFKPG 414
Query: 1304 QDISTKILKYDQEKNRVSLGMKQLGIDPWIGLSFRYPRGTRLLGKVTNLTDYGAFVEIEK 1363
+I+ Y Q L ++ I+ G + GKV + +G V++ K
Sbjct: 415 NTHKCRIIDYSQMDELALLSLRTSIIEAQFLWYHDIKPGALVKGKVLTIKPHGMVVKMGK 474
Query: 1364 GIEGLVHISEM-DWINKNVTPSKIVQLNDTVEIMILEINEERRRISLGMKQC---KDNPW 1419
I GLV + D + KN P K + D V+ +L + + +++ + +K+ P
Sbjct: 475 QIRGLVPTMHLADILIKN--PEKKYHVGDEVKCRVLLCDPKAKKLMMTLKKTLVESKLPA 532
Query: 1420 ENFXXXXXXXXXXXXXXXXXTDFGIFIGLDGNIDGLIHLSDLSWTD-PGEEIIRNFKKGD 1478
D+G + ++ GL+ +LS P E + F G
Sbjct: 533 ITCYDDAKPGLQTHGFILRVKDYGCIVKFYNDVQGLVPRHELSAEYVPDPESV--FYTGQ 590
Query: 1479 EIEAIILSIDVEKERISLGIKQLEGDP 1505
++ ++L+ + KER+ L + L DP
Sbjct: 591 VVKVVVLNCEPSKERMLLSFRLLS-DP 616
Score = 151 (58.2 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 80/354 (22%), Positives = 145/354 (40%)
Query: 1214 GKTMDFKVIKLDRKRNNVVLSHRAVIEESMGEERQKL-IETLKEGCTVKGVVKNITDYGA 1272
G T ++I + +LS R I E+ Q L +K G VKG V I +G
Sbjct: 414 GNTHKCRIIDYSQMDELALLSLRTSIIEA-----QFLWYHDIKPGALVKGKVLTIKPHGM 468
Query: 1273 FIDLGG-IDGL---LHITDIAWRRVKHPSEILTIGQDISTKILKYDQEKNRVSLGMKQLG 1328
+ +G I GL +H+ DI +K+P + +G ++ ++L D + ++ + +K+
Sbjct: 469 VVKMGKQIRGLVPTMHLADIL---IKNPEKKYHVGDEVKCRVLLCDPKAKKLMMTLKKTL 525
Query: 1329 ID---PWIGLSFRYPRGTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEMDWINKNVTPSK 1385
++ P I G + G + + DYG V+ ++GLV E+ P
Sbjct: 526 VESKLPAITCYDDAKPGLQTHGFILRVKDYGCIVKFYNDVQGLVPRHELS-AEYVPDPES 584
Query: 1386 IVQLNDTVEIMILEINEERRRISLGMKQCKDNPWENFXXXXXXXXXXXXXXXXX------ 1439
+ V++++L + R+ L + D E
Sbjct: 585 VFYTGQVVKVVVLNCEPSKERMLLSFRLLSDPKQEGEGQSQKKKKAVSAGQLVDVKVLEK 644
Query: 1440 TDFGIFIG-LDGNIDGLI---HLSDLSWTDPGEEIIRNFKKGDEIEAIILSIDVEKERIS 1495
T G+ + L NI G + HLSD G + + GD + + L + V +ER+
Sbjct: 645 TKDGLKVAVLPHNIPGFLPTAHLSD--HVTNGPLLYHWLQTGDTLHRV-LCLSVSEERVL 701
Query: 1496 LG-----IKQLEG--DPFNNYVNINDKGSLVNGIIKSIDTNKGAIIQLSNEVEG 1542
L + +EG +P ++ I+ G L+ G +K+I + G +Q + + G
Sbjct: 702 LCRKPALVSAVEGGQNP-KSFSEIHP-GMLLIGFVKNIK-DYGVFVQFPSGLSG 752
Score = 124 (48.7 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 73/355 (20%), Positives = 143/355 (40%)
Query: 1167 MESGEIITGTI-NGKVKGGLTVLTNGLKAFLPGS-LVDIRPVKDTTPFE-GKTMDFKVIK 1223
++ G ++ G + K G + + ++ +P L DI + G + +V+
Sbjct: 450 IKPGALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVGDEVKCRVLL 509
Query: 1224 LDRKRNNVVLSHRAVIEESMGEERQKLIETLKEGCTVKGVVKNITDYGAFIDL-GGIDGL 1282
D K ++++ + + ES + K G G + + DYG + + GL
Sbjct: 510 CDPKAKKLMMTLKKTLVESK-LPAITCYDDAKPGLQTHGFILRVKDYGCIVKFYNDVQGL 568
Query: 1283 LHITDIAWRRVKHPSEILTIGQDISTKILKYDQEKNRVSLGMKQLGIDP---WIGLSFRY 1339
+ +++ V P + GQ + +L + K R+ L + L DP G S +
Sbjct: 569 VPRHELSAEYVPDPESVFYTGQVVKVVVLNCEPSKERMLLSFRLLS-DPKQEGEGQSQKK 627
Query: 1340 PRGT---RLLG-KVTNLTDYGAFVEI-EKGIEGLVHISEM-DWINKNVTPSKIVQLNDTV 1393
+ +L+ KV T G V + I G + + + D + +Q DT+
Sbjct: 628 KKAVSAGQLVDVKVLEKTKDGLKVAVLPHNIPGFLPTAHLSDHVTNGPLLYHWLQTGDTL 687
Query: 1394 E-IMILEINEER----RRISL-GMKQCKDNPWENFXXXXXXXXXXXXXXXXXTDFGIFIG 1447
++ L ++EER R+ +L + NP ++F D+G+F+
Sbjct: 688 HRVLCLSVSEERVLLCRKPALVSAVEGGQNP-KSFSEIHPGMLLIGFVKNIK-DYGVFVQ 745
Query: 1448 LDGNIDGLIH---LSDLSWTDPGEEIIRNFKKGDEIEAIILSIDVEKERISLGIK 1499
+ GL LSD T + +F +G + A + ++D EK+R+ L ++
Sbjct: 746 FPSGLSGLAPKAILSDKFVTSTSD----HFVEGQTVVAKVTNVDEEKQRMLLSLR 796
Score = 76 (31.8 bits), Expect = 9.7e-09, Sum P(2) = 9.7e-09
Identities = 22/104 (21%), Positives = 50/104 (48%)
Query: 1484 ILSIDVEKERISLGIKQLEGDPFNNYVNINDKGSLVNGIIKSIDTNKGAIIQLSNEVEGY 1543
+L++ + R + K DP N + ++G L+ G +KS+ + G ++ L V G
Sbjct: 1292 VLTLSLRSSRTNPETKSKITDPEINSIEDLEEGQLLRGFVKSVQPS-GVLVGLGPSVTGL 1350
Query: 1544 LR---ISEEDNK----HEKKLKIGENIDVLTVLIDHKTRYIQLS 1580
R +S+ + +++ L G+ + + ++H+ ++LS
Sbjct: 1351 ARHPHVSQHNQSKNAPYDRHLPEGKLLTAKVLRLNHQESLVELS 1394
Score = 39 (18.8 bits), Expect = 6.0e-05, Sum P(2) = 6.0e-05
Identities = 20/106 (18%), Positives = 44/106 (41%)
Query: 1472 RNFKKGDEIEAIILSIDVEKERISL-GIKQLEGDPFNNYVNI-----NDKGSLVNGIIKS 1525
+ KKG +++AI+ ++ SL L +++N ++K + G+ +
Sbjct: 918 KKLKKGSDLQAIVQHLEESFAVASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLT 977
Query: 1526 IDTNKGAIIQLSNEVEGYL--RISEEDNKHEKKLKIGENIDVLTVL 1569
+ T + + L +EG R + K + + E +D V+
Sbjct: 978 LQTTEPGVTGLLLAIEGPAAKRTMRQTRKDSETVDEDEEVDPALVV 1023
>UNIPROTKB|A7MB10 [details] [associations]
symbol:PDCD11 "Protein RRP5 homolog" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 SMART:SM00386 GO:GO:0005730 GO:GO:0006397
GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006364 InterPro:IPR022967
SMART:SM00316 EMBL:BC151277 IPI:IPI00867038 RefSeq:NP_001095573.1
UniGene:Bt.23141 ProteinModelPortal:A7MB10 SMR:A7MB10 PRIDE:A7MB10
GeneID:526867 KEGG:bta:526867 CTD:22984 eggNOG:COG0539
HOGENOM:HOG000088607 HOVERGEN:HBG108419 KO:K14792 NextBio:20874464
Uniprot:A7MB10
Length = 1874
Score = 158 (60.7 bits), Expect = 9.7e-09, Sum P(2) = 9.7e-09
Identities = 95/447 (21%), Positives = 183/447 (40%)
Query: 1083 MRSGEVISAEVIGLDRNFVIINADLK-SEAFIPIEE----FKNDNGELEVKIGDFVSVAI 1137
++ G +++ V L+ + +++ + + AF+P+++ + N ++K+G +++ I
Sbjct: 184 LKPGMLLTGTVSSLEDHGYLVDIGVSGARAFLPLQKAQEYIRQKNKGAKLKVGQYLNCLI 243
Query: 1138 ESLENGFGDTILSRDKAKRLASWLSLEKAMESGEIITG-TINGKVKGGLTVLTNGLK--A 1194
E ++ G LS ++ A+ + E++ ++ G + +V+ +T L LK +
Sbjct: 244 EEVKGSRGVVTLSIGHSEVSAAIATEEQSWTLNSLLPGLVVKAQVQK-VTPLGLTLKFLS 302
Query: 1195 FLPGSLVD---IRPVKDTTPFEGKTMDFKVIKLDRKRNNVVLSHRAVIEESMGEERQKLI 1251
F G LVD + P K T F + + V+ + + V LS R V + G +L+
Sbjct: 303 FFSG-LVDFMHLDPKKAGTYFSNQQVRACVLCVHPRTRAVRLSLRPVFLQP-GRPLTRLL 360
Query: 1252 ETLKEGCTVKGVVKNITDYGAFIDLGGIDGLLHITDIAWRRVKHPS--------EILTIG 1303
C G V + F G L +A+ R H S E G
Sbjct: 361 ------CQQLGAVLDDVPVQGFFGSAGATFKLKDGTLAYARRNHLSNSKKTFKPEAFKPG 414
Query: 1304 QDISTKILKYDQEKNRVSLGMKQLGIDPWIGLSFRYPRGTRLLGKVTNLTDYGAFVEIEK 1363
+I+ Y Q L ++ I+ G + GKV + +G V++ K
Sbjct: 415 NTHKCRIIDYSQMDELALLSLRTSIIEAQFLWYHDIKPGALVKGKVLTIKPHGMVVKMGK 474
Query: 1364 GIEGLVHISEM-DWINKNVTPSKIVQLNDTVEIMILEINEERRRISLGMKQC---KDNPW 1419
I GLV + D + KN P K + D V+ +L + + +++ + +K+ P
Sbjct: 475 QIRGLVPTMHLADILIKN--PEKKYHVGDEVKCRVLLCDPKAKKLMMTLKKTLVESKLPA 532
Query: 1420 ENFXXXXXXXXXXXXXXXXXTDFGIFIGLDGNIDGLIHLSDLSWTD-PGEEIIRNFKKGD 1478
D+G + ++ GL+ +LS P E + F G
Sbjct: 533 ITCYDDAKPGLQTHGFILRVKDYGCIVKFYNDVQGLVPRHELSAEYVPDPESV--FYTGQ 590
Query: 1479 EIEAIILSIDVEKERISLGIKQLEGDP 1505
++ ++L+ + KER+ L + L DP
Sbjct: 591 VVKVVVLNCEPSKERMLLSFRLLS-DP 616
Score = 152 (58.6 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 80/354 (22%), Positives = 145/354 (40%)
Query: 1214 GKTMDFKVIKLDRKRNNVVLSHRAVIEESMGEERQKL-IETLKEGCTVKGVVKNITDYGA 1272
G T ++I + +LS R I E+ Q L +K G VKG V I +G
Sbjct: 414 GNTHKCRIIDYSQMDELALLSLRTSIIEA-----QFLWYHDIKPGALVKGKVLTIKPHGM 468
Query: 1273 FIDLGG-IDGL---LHITDIAWRRVKHPSEILTIGQDISTKILKYDQEKNRVSLGMKQLG 1328
+ +G I GL +H+ DI +K+P + +G ++ ++L D + ++ + +K+
Sbjct: 469 VVKMGKQIRGLVPTMHLADIL---IKNPEKKYHVGDEVKCRVLLCDPKAKKLMMTLKKTL 525
Query: 1329 ID---PWIGLSFRYPRGTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEMDWINKNVTPSK 1385
++ P I G + G + + DYG V+ ++GLV E+ P
Sbjct: 526 VESKLPAITCYDDAKPGLQTHGFILRVKDYGCIVKFYNDVQGLVPRHELS-AEYVPDPES 584
Query: 1386 IVQLNDTVEIMILEINEERRRISLGMKQCKDNPWENFXXXXXXXXXXXXXXXXX------ 1439
+ V++++L + R+ L + D E
Sbjct: 585 VFYTGQVVKVVVLNCEPSKERMLLSFRLLSDPKQEGEGQSQKKKKAVSAGQLADVKVLEK 644
Query: 1440 TDFGIFIG-LDGNIDGLI---HLSDLSWTDPGEEIIRNFKKGDEIEAIILSIDVEKERIS 1495
T G+ + L NI G + HLSD G + + GD + + L + V +ER+
Sbjct: 645 TKDGLKVAVLPHNIPGFLPTAHLSD--HVTNGPLLYHWLQTGDTLHRV-LCLSVSEERVL 701
Query: 1496 LG-----IKQLEG--DPFNNYVNINDKGSLVNGIIKSIDTNKGAIIQLSNEVEG 1542
L + +EG +P ++ I+ G L+ G +K+I + G +Q + + G
Sbjct: 702 LCRKPALVSAVEGGQNP-KSFSEIHP-GMLLIGFVKNIK-DYGVFVQFPSGLSG 752
Score = 122 (48.0 bits), Expect = 5.4e-05, Sum P(2) = 5.4e-05
Identities = 73/355 (20%), Positives = 142/355 (40%)
Query: 1167 MESGEIITGTI-NGKVKGGLTVLTNGLKAFLPGS-LVDIRPVKDTTPFE-GKTMDFKVIK 1223
++ G ++ G + K G + + ++ +P L DI + G + +V+
Sbjct: 450 IKPGALVKGKVLTIKPHGMVVKMGKQIRGLVPTMHLADILIKNPEKKYHVGDEVKCRVLL 509
Query: 1224 LDRKRNNVVLSHRAVIEESMGEERQKLIETLKEGCTVKGVVKNITDYGAFIDL-GGIDGL 1282
D K ++++ + + ES + K G G + + DYG + + GL
Sbjct: 510 CDPKAKKLMMTLKKTLVESK-LPAITCYDDAKPGLQTHGFILRVKDYGCIVKFYNDVQGL 568
Query: 1283 LHITDIAWRRVKHPSEILTIGQDISTKILKYDQEKNRVSLGMKQLGIDP---WIGLSFRY 1339
+ +++ V P + GQ + +L + K R+ L + L DP G S +
Sbjct: 569 VPRHELSAEYVPDPESVFYTGQVVKVVVLNCEPSKERMLLSFRLLS-DPKQEGEGQSQKK 627
Query: 1340 PRGT---RLLG-KVTNLTDYGAFVEI-EKGIEGLVHISEM-DWINKNVTPSKIVQLNDTV 1393
+ +L KV T G V + I G + + + D + +Q DT+
Sbjct: 628 KKAVSAGQLADVKVLEKTKDGLKVAVLPHNIPGFLPTAHLSDHVTNGPLLYHWLQTGDTL 687
Query: 1394 E-IMILEINEER----RRISL-GMKQCKDNPWENFXXXXXXXXXXXXXXXXXTDFGIFIG 1447
++ L ++EER R+ +L + NP ++F D+G+F+
Sbjct: 688 HRVLCLSVSEERVLLCRKPALVSAVEGGQNP-KSFSEIHPGMLLIGFVKNIK-DYGVFVQ 745
Query: 1448 LDGNIDGLIH---LSDLSWTDPGEEIIRNFKKGDEIEAIILSIDVEKERISLGIK 1499
+ GL LSD T + +F +G + A + ++D EK+R+ L ++
Sbjct: 746 FPSGLSGLAPKAILSDKFVTSTSD----HFVEGQTVVAKVTNVDEEKQRMLLSLR 796
Score = 76 (31.8 bits), Expect = 9.7e-09, Sum P(2) = 9.7e-09
Identities = 22/104 (21%), Positives = 50/104 (48%)
Query: 1484 ILSIDVEKERISLGIKQLEGDPFNNYVNINDKGSLVNGIIKSIDTNKGAIIQLSNEVEGY 1543
+L++ + R + K DP N + ++G L+ G +KS+ + G ++ L V G
Sbjct: 1292 VLTLSLRSSRTNPETKSKITDPEINSIEDLEEGQLLRGFVKSVQPS-GVLVGLGPSVTGL 1350
Query: 1544 LR---ISEEDNK----HEKKLKIGENIDVLTVLIDHKTRYIQLS 1580
R +S+ + +++ L G+ + + ++H+ ++LS
Sbjct: 1351 ARHPHVSQHNQSKNAPYDRHLPEGKLLTAKVLRLNHQESLVELS 1394
Score = 39 (18.8 bits), Expect = 6.0e-05, Sum P(2) = 6.0e-05
Identities = 20/106 (18%), Positives = 44/106 (41%)
Query: 1472 RNFKKGDEIEAIILSIDVEKERISL-GIKQLEGDPFNNYVNI-----NDKGSLVNGIIKS 1525
+ KKG +++AI+ ++ SL L +++N ++K + G+ +
Sbjct: 918 KKLKKGSDLQAIVQHLEESFAVASLVETGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLT 977
Query: 1526 IDTNKGAIIQLSNEVEGYL--RISEEDNKHEKKLKIGENIDVLTVL 1569
+ T + + L +EG R + K + + E +D V+
Sbjct: 978 LQTTEPGVTGLLLAIEGPAAKRTMRQTRKDSETVDEDEEVDPALVV 1023
>RGD|1586156 [details] [associations]
symbol:Top2b "topoisomerase (DNA) II beta" species:10116 "Rattus
norvegicus" [GO:0001764 "neuron migration" evidence=ISO]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=ISO]
[GO:0005080 "protein kinase C binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005829 "cytosol" evidence=ISO] [GO:0006265 "DNA topological
change" evidence=ISO] [GO:0007409 "axonogenesis" evidence=ISO]
[GO:0008022 "protein C-terminus binding" evidence=ISO] [GO:0019899
"enzyme binding" evidence=ISO] [GO:0030900 "forebrain development"
evidence=ISO] [GO:0042826 "histone deacetylase binding"
evidence=ISO] [GO:0046982 "protein heterodimerization activity"
evidence=ISO] [GO:0071778 "WINAC complex" evidence=ISO] [GO:0005694
"chromosome" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0000792 "heterochromatin" evidence=ISO] InterPro:IPR002205
InterPro:IPR013758 InterPro:IPR013760 Pfam:PF00521 SMART:SM00434
RGD:1586156 GO:GO:0005524 GO:GO:0005080 GO:GO:0003682 GO:GO:0006261
GO:GO:0042826 Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819
GO:GO:0006312 GO:GO:0071778 GO:GO:0070683 GO:GO:0000712
GO:GO:0000795 GO:GO:0006265 GO:GO:0003918 Gene3D:3.90.199.10
SUPFAM:SSF56719 HSSP:P06786 EMBL:D14046 IPI:IPI00763824 PIR:B48536
UniGene:Rn.104585 UniGene:Rn.226280 ProteinModelPortal:Q63177
ChEMBL:CHEMBL4672 Genevestigator:Q63177 Uniprot:Q63177
Length = 214
Score = 153 (58.9 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 44/139 (31%), Positives = 71/139 (51%)
Query: 67 ARVVGET--MGKYHPHGDVSIYDALVRMAQSF--SLRCTLVDGQGNFGSI--DGDSAAAM 120
A++ G M YH HG+ ++ +V +AQ+F S L+ G FG+ G AA+
Sbjct: 1 AQLAGSVAEMSAYH-HGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASP 59
Query: 121 RYTECRLNKISNELLIDLDKETIDFISNYDGKEK-EPSVLPTRIPNLLINGSSGIAVGMA 179
RY L+ ++ L +D + F+ YD ++ EP IP +LING+ GI G A
Sbjct: 60 RYIFTMLSSLARLLFPAVDDNLLKFL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWA 117
Query: 180 TNIPPHNLTEVIDGVLYVL 198
+P ++ E++D V +L
Sbjct: 118 CKLPNYDAREIVDNVRRML 136
>UNIPROTKB|Q14690 [details] [associations]
symbol:PDCD11 "Protein RRP5 homolog" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR003029
InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126
SMART:SM00386 GO:GO:0005829 GO:GO:0005634 GO:GO:0005730
EMBL:CH471066 GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AL591408
GO:GO:0006364 EMBL:AL139339 InterPro:IPR022967 SMART:SM00316
CTD:22984 eggNOG:COG0539 HOGENOM:HOG000088607 HOVERGEN:HBG108419
KO:K14792 EMBL:D80007 EMBL:AL603983 EMBL:BC049838 EMBL:BC064486
EMBL:BC080560 EMBL:BC111040 EMBL:AY007124 IPI:IPI00400922
RefSeq:NP_055791.1 UniGene:Hs.239499 PDB:1WI5 PDBsum:1WI5
ProteinModelPortal:Q14690 SMR:Q14690 IntAct:Q14690
MINT:MINT-1388150 STRING:Q14690 PhosphoSite:Q14690 DMDM:145559523
SWISS-2DPAGE:Q14690 PaxDb:Q14690 PRIDE:Q14690 DNASU:22984
Ensembl:ENST00000369797 GeneID:22984 KEGG:hsa:22984 UCSC:uc001kwy.1
GeneCards:GC10P105156 H-InvDB:HIX0009176 HGNC:HGNC:13408
HPA:CAB026472 HPA:HPA017924 MIM:612333 neXtProt:NX_Q14690
PharmGKB:PA134909758 InParanoid:Q14690 OMA:LHLADIY
OrthoDB:EOG4XKV63 PhylomeDB:Q14690 ChiTaRS:PDCD11
EvolutionaryTrace:Q14690 GenomeRNAi:22984 NextBio:43819
ArrayExpress:Q14690 Bgee:Q14690 CleanEx:HS_PDCD11
Genevestigator:Q14690 GermOnline:ENSG00000148843 Uniprot:Q14690
Length = 1871
Score = 165 (63.1 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 90/388 (23%), Positives = 161/388 (41%)
Query: 1182 KGGLTV-LTNGLKAFLPGS-LVDIRPVKDTTPFE-GKTMDFKVIKLDRKRNNVVLSHRAV 1238
K G T L +G+ A+ S L D + V + F+ G T ++I + +LS R
Sbjct: 379 KAGATFRLKDGVLAYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDYSQMDELALLSLRTS 438
Query: 1239 IEESMGEERQKL-IETLKEGCTVKGVVKNITDYGAFIDLGG-IDGL---LHITDIAWRRV 1293
I E+ Q L ++ G VKG V I YG + +G + GL +H+ DI +
Sbjct: 439 IIEA-----QYLRYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLADIL---M 490
Query: 1294 KHPSEILTIGQDISTKILKYDQEKNRVSLGMKQLGIDPWIGLSFRYPR---GTRLLGKVT 1350
K+P + IG ++ ++L D E ++ + +K+ I+ + + Y G + G +
Sbjct: 491 KNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAKPGLQTHGFII 550
Query: 1351 NLTDYGAFVEIEKGIEGLVHISEMDWINKNVTPSKIVQLNDTVEIMILEINEERRRISLG 1410
+ DYG V+ ++GLV E+ P ++ V++++L + R+ L
Sbjct: 551 RVKDYGCIVKFYNNVQGLVPKHELS-TEYIPDPERVFYTGQVVKVVVLNCEPSKERMLLS 609
Query: 1411 MKQCKDNPWENFXXXXXXXXXXXXXXXXXTDF--------GIFIG-LDGNIDGLIHLSDL 1461
K D + D G+ + L NI + S L
Sbjct: 610 FKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNIRAFLPTSHL 669
Query: 1462 SWTDPGEEIIRNFKKGDEIEAIILSIDVEKERISLG-----IKQLEG--DPFNNYVNIND 1514
S ++ ++ + +I +L + + R+ L + +EG DP N+ I+
Sbjct: 670 SDHVANGPLLHHWLQAGDILHRVLCLSQSEGRVLLCRKPALVSTVEGGQDP-KNFSEIHP 728
Query: 1515 KGSLVNGIIKSIDTNKGAIIQLSNEVEG 1542
G L+ G +KSI + G IQ + + G
Sbjct: 729 -GMLLIGFVKSIK-DYGVFIQFPSGLSG 754
Score = 161 (61.7 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 111/480 (23%), Positives = 202/480 (42%)
Query: 1056 KMNIN-QVVNQILDCFATLFKESLLRHDMRSGEVISAEVIGLDRNFVI-INADLKSEAFI 1113
K+++N + VN++L A K +L +G V S E D +++ I D + AF+
Sbjct: 167 KLSLNPKNVNRVLS--AEALKPGMLL----TGTVSSLE----DHGYLVDIGVD-GTRAFL 215
Query: 1114 PI---EEF-KNDNGELEVKIGDFVSVAIESLE-NG------FGDTILSRDKAKRLASWLS 1162
P+ +E+ + N ++K+G +++ +E ++ NG G + +S A SW +
Sbjct: 216 PLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLSVGHSEVSTAIATEQQSW-N 274
Query: 1163 LEKAMESGEIITGTINGKVKGGLTVLTNGLKAFLPGSLVD---IRPVKDTTPFEGKTMDF 1219
L + G ++ + GLT+ N L F G +VD + P K T F + +
Sbjct: 275 LNNLLP-GLVVKAQVQKVTPFGLTL--NFL-TFFTG-VVDFMHLDPKKAGTYFSNQAVRA 329
Query: 1220 KVIKLDRKRNNVVLSHRAVIEESMGEERQKL----IETLKEGCTVKGVVKNITDYGAFID 1275
++ + + V LS R + + G +L + + + V+G K GA
Sbjct: 330 CILCVHPRTRVVHLSLRPIFLQP-GRPLTRLSCQNLGAVLDDVPVQGFFKKA---GATFR 385
Query: 1276 LGGIDGLL------HITDIAWRRVKHPSEILTIGQDISTKILKYDQEKNRVSLGMKQLGI 1329
L DG+L H++D + V +P E G +I+ Y Q L ++ I
Sbjct: 386 LK--DGVLAYARLSHLSDS--KNVFNP-EAFKPGNTHKCRIIDYSQMDELALLSLRTSII 440
Query: 1330 DPWIGLSFRYPRGTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEM-DWINKNVTPSKIVQ 1388
+ G + G V + YG V++ + + GLV + D + KN P K
Sbjct: 441 EAQYLRYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLADILMKN--PEKKYH 498
Query: 1389 LNDTVEIMILEINEERRRISLGMKQC---KDNPWENFXXXXXXXXXXXXXXXXXTDFGIF 1445
+ D V+ +L + E +++ + +K+ P D+G
Sbjct: 499 IGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAKPGLQTHGFIIRVKDYGCI 558
Query: 1446 IGLDGNIDGLIHLSDLSWTDPGEEIIRNFKKGDEIEAIILSIDVEKERISLGIKQLEGDP 1505
+ N+ GL+ +LS T+ + R F G ++ ++L+ + KER+ L K L DP
Sbjct: 559 VKFYNNVQGLVPKHELS-TEYIPDPERVFYTGQVVKVVVLNCEPSKERMLLSFK-LSSDP 616
Score = 150 (57.9 bits), Expect = 3.8e-08, Sum P(3) = 3.8e-08
Identities = 87/326 (26%), Positives = 148/326 (45%)
Query: 1021 MSDLLI-NLIKR-DIRDKTRNLSPLKC-PEQAHLLNTSKMNINQVVNQILDCFATLFKES 1077
++D+L+ N K+ I D+ + L C PE L+ T K + + ++ C+A K
Sbjct: 485 LADILMKNPEKKYHIGDEVK-CRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADA-KPG 542
Query: 1078 LLRHDMRSGEVISAEVIGLDRNF------VIINADLKSEAFIPIEEFKNDNGELEVKIGD 1131
L H G +I + G F ++ +L +E +IP E G++ VK+
Sbjct: 543 LQTH----GFIIRVKDYGCIVKFYNNVQGLVPKHELSTE-YIPDPERVFYTGQV-VKV-- 594
Query: 1132 FVSVAIE-SLENGFGDTILSRD-KAKRLASWLSLEK--AMESGEIITGTINGKVKGGL-- 1185
V + E S E LS D + K+ + S +K A+ G+++ + K K GL
Sbjct: 595 -VVLNCEPSKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLEV 653
Query: 1186 TVLTNGLKAFLPGS-LVDI---RPVKDTTPFEGKTMDFKVIKLDRKRNNVVLSHR-AVIE 1240
VL + ++AFLP S L D P+ G + +V+ L + V+L + A++
Sbjct: 654 AVLPHNIRAFLPTSHLSDHVANGPLLHHWLQAGDILH-RVLCLSQSEGRVLLCRKPALVS 712
Query: 1241 ESMGEERQKLIETLKEGCTVKGVVKNITDYGAFIDL-GGIDGLLHITDIAWRRVKHPSEI 1299
G + K + G + G VK+I DYG FI G+ GL ++ + V S+
Sbjct: 713 TVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDH 772
Query: 1300 LTIGQDISTKILKYDQEKNRVSLGMK 1325
GQ ++ K+ D+EK R+ L ++
Sbjct: 773 FVEGQTVAAKVTNVDEEKQRMLLSLR 798
Score = 72 (30.4 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 25/105 (23%), Positives = 48/105 (45%)
Query: 1484 ILSIDVEKERISLGIKQLEGDPFNNYVNINDKGSLVNGIIKSIDTNKGAIIQLSNEVEG- 1542
+L++ + R + K DP N + +G L+ G + SI + G +L V G
Sbjct: 1292 VLTLSLRSSRTNPETKSKVEDPEINSIQDIKEGQLLRGYVGSIQPH-GVFFRLGPSVVGL 1350
Query: 1543 --YLRISEED-NK---HEKKLKIGENIDVLTVLIDHKTRYIQLSF 1581
Y +S+ +K + K L G+ + + ++H+ ++LSF
Sbjct: 1351 ARYSHVSQHSPSKKALYNKHLPEGKLLTARVLRLNHQKNLVELSF 1395
Score = 58 (25.5 bits), Expect = 3.8e-08, Sum P(3) = 3.8e-08
Identities = 14/58 (24%), Positives = 29/58 (50%)
Query: 1342 GTRLLGKVTNLTDYGAFVEIEKGIEGLVHISE-MDWINKNVTPSKIVQLNDTVEIMIL 1398
G + G V ++ V +E GI G +H S +D + + +P+ +++ TV ++
Sbjct: 1036 GDMVTGTVKSIKPTHVVVTLEDGIIGCIHASHILDDVPEGTSPTTKLKVGKTVTARVI 1093
Score = 44 (20.5 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 23/126 (18%), Positives = 58/126 (46%)
Query: 1444 IFIGLDGNIDGLIHLSDLSWTDPGEEIIRNFKKGDEIEAIILSIDVEKERISLGIKQLEG 1503
+F G G + L+ L + G+E+ + G + + +IL++D+ K + + + Q
Sbjct: 863 VFSG--GPVPDLV-LKASRYHRAGQEV----ESGQKKKVVILNVDLLKLEVHVSLHQ--- 912
Query: 1504 DPFNNYVNINDKGSLVNGIIKSIDTNKG--AIIQLSNEVEGYL--RISEEDNKHEKKLKI 1559
D N KGS I++ ++ + ++++ + L +++ +KL++
Sbjct: 913 DLVNRKARKLRKGSEHQAIVQHLEKSFAIASLVETGHLAAFSLTSHLNDTFRFDSEKLQV 972
Query: 1560 GENIDV 1565
G+ + +
Sbjct: 973 GQGVSL 978
Score = 41 (19.5 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 12/53 (22%), Positives = 27/53 (50%)
Query: 1516 GSLVNGIIKSIDTNKGAII---QLSNEVEGYLRISEEDNKHEKKLKIGENIDV 1565
G +V ++ + + +K ++ +LS++ E + K K + IG+ +DV
Sbjct: 589 GQVVKVVVLNCEPSKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDV 641
Score = 39 (18.8 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 15/53 (28%), Positives = 23/53 (43%)
Query: 1510 VNINDKGSLVNGIIKSIDTNKGAII------QLSNEVEGYLRISEEDNKHEKK 1556
+ +N + +LV DT K ++ QL+ + E E D K EKK
Sbjct: 1382 LRLNHQKNLVELSFLPGDTGKPDVLSASLEGQLTKQEERKTEAEERDQKGEKK 1434
Score = 38 (18.4 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 1525 SIDTNKGAIIQLSNEVEGYLRISEEDNKHEKKLKIGENIDVL 1566
S+ + G + L + Y R +E +KK + N+D+L
Sbjct: 861 SVVFSGGPVPDLVLKASRYHRAGQEVESGQKKKVVILNVDLL 902
>UNIPROTKB|Q71X59 [details] [associations]
symbol:LMOf2365_2340 "S1 RNA binding domain protein"
species:265669 "Listeria monocytogenes serotype 4b str. F2365"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000110
InterPro:IPR003029 Pfam:PF00575 PRINTS:PR00681 PROSITE:PS50126
GO:GO:0006412 GO:GO:0003723 GO:GO:0005840 GO:GO:0003735
EMBL:AE017262 GenomeReviews:AE017262_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
RefSeq:YP_014929.1 ProteinModelPortal:Q71X59 STRING:Q71X59
GeneID:2799400 KEGG:lmf:LMOf2365_2340 PATRIC:20326043
eggNOG:COG1098 HOGENOM:HOG000217052 KO:K07570 OMA:KSIHDIA
ProtClustDB:PRK08059 Uniprot:Q71X59
Length = 117
Score = 145 (56.1 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 1251 IETLKEGCTVKGVVKNITDYGAFIDL-GGIDGLLHITDIAWRRVKHPSEILTIGQDISTK 1309
+ T K G V G + I YGAF+ L GL+HI++I VK + L +GQ++ K
Sbjct: 1 MSTFKVGDVVSGKIAGIQSYGAFVALDNSTQGLVHISEITHGFVKDIHDFLEVGQEVKVK 60
Query: 1310 ILKYDQEKNRVSLGMK 1325
IL D+EKN++SL ++
Sbjct: 61 ILDIDEEKNKISLSIR 76
Score = 126 (49.4 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 27/80 (33%), Positives = 49/80 (61%)
Query: 1342 GTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEMDW-INKNVTPSKIVQLNDTVEIMILEI 1400
G + GK+ + YGAFV ++ +GLVHISE+ K++ +++ V++ IL+I
Sbjct: 7 GDVVSGKIAGIQSYGAFVALDNSTQGLVHISEITHGFVKDI--HDFLEVGQEVKVKILDI 64
Query: 1401 NEERRRISLGMKQCKDNPWE 1420
+EE+ +ISL ++ ++ P E
Sbjct: 65 DEEKNKISLSIRATEEAPKE 84
Score = 107 (42.7 bits), Expect = 0.00015, P = 0.00015
Identities = 25/65 (38%), Positives = 39/65 (60%)
Query: 1442 FGIFIGLDGNIDGLIHLSDLSWTDPGEEIIRNFKK-GDEIEAIILSIDVEKERISLGIKQ 1500
+G F+ LD + GL+H+S++ T + I +F + G E++ IL ID EK +ISL I+
Sbjct: 20 YGAFVALDNSTQGLVHISEI--THGFVKDIHDFLEVGQEVKVKILDIDEEKNKISLSIRA 77
Query: 1501 LEGDP 1505
E P
Sbjct: 78 TEEAP 82
>UNIPROTKB|Q74GL1 [details] [associations]
symbol:tex "S1 RNA-binding domain-containing
transcriptional accessory protein" species:243231 "Geobacter
sulfurreducens PCA" [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003029 InterPro:IPR003583 InterPro:IPR006641
Pfam:PF00575 PROSITE:PS50126 SMART:SM00278 SMART:SM00732
GO:GO:0003677 GO:GO:0006281 GO:GO:0003723 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0016788 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
Gene3D:3.30.420.140 Gene3D:1.10.150.310 Gene3D:1.10.3500.10
InterPro:IPR023323 InterPro:IPR023097 InterPro:IPR018974
Pfam:PF09371 OMA:YKQKRRT Gene3D:1.10.10.650 InterPro:IPR023319
HOGENOM:HOG000270497 KO:K06959 RefSeq:NP_951296.1
ProteinModelPortal:Q74GL1 SMR:Q74GL1 GeneID:2687602
KEGG:gsu:GSU0235 PATRIC:22023214 ProtClustDB:CLSK2306712
BioCyc:GSUL243231:GH27-222-MONOMER Uniprot:Q74GL1
Length = 761
Score = 169 (64.5 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 31/77 (40%), Positives = 54/77 (70%)
Query: 1251 IETLKEGCTVKGVVKNITDYGAFIDLG-GIDGLLHITDIAWRRVKHPSEILTIGQDISTK 1309
I LKEG ++GVV N+T +GAF+D+G DGL+H++ ++ + VK P+E + +GQ + K
Sbjct: 644 IGDLKEGMVLQGVVTNVTAFGAFVDVGVHQDGLVHVSHLSVKFVKDPAEAVRVGQVVQVK 703
Query: 1310 ILKYDQEKNRVSLGMKQ 1326
+L D ++ R+SL +++
Sbjct: 704 VLSVDVQRKRISLSIRE 720
>TIGR_CMR|GSU_0235 [details] [associations]
symbol:GSU_0235 "S1 RNA binding domain protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003029 InterPro:IPR003583
InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126 SMART:SM00278
SMART:SM00732 GO:GO:0003677 GO:GO:0006281 GO:GO:0003723
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0016788
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 Gene3D:3.30.420.140
Gene3D:1.10.150.310 Gene3D:1.10.3500.10 InterPro:IPR023323
InterPro:IPR023097 InterPro:IPR018974 Pfam:PF09371 OMA:YKQKRRT
Gene3D:1.10.10.650 InterPro:IPR023319 HOGENOM:HOG000270497
KO:K06959 RefSeq:NP_951296.1 ProteinModelPortal:Q74GL1 SMR:Q74GL1
GeneID:2687602 KEGG:gsu:GSU0235 PATRIC:22023214
ProtClustDB:CLSK2306712 BioCyc:GSUL243231:GH27-222-MONOMER
Uniprot:Q74GL1
Length = 761
Score = 169 (64.5 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 31/77 (40%), Positives = 54/77 (70%)
Query: 1251 IETLKEGCTVKGVVKNITDYGAFIDLG-GIDGLLHITDIAWRRVKHPSEILTIGQDISTK 1309
I LKEG ++GVV N+T +GAF+D+G DGL+H++ ++ + VK P+E + +GQ + K
Sbjct: 644 IGDLKEGMVLQGVVTNVTAFGAFVDVGVHQDGLVHVSHLSVKFVKDPAEAVRVGQVVQVK 703
Query: 1310 ILKYDQEKNRVSLGMKQ 1326
+L D ++ R+SL +++
Sbjct: 704 VLSVDVQRKRISLSIRE 720
>WB|WBGene00022854 [details] [associations]
symbol:cin-4 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0051301 "cell division" evidence=IMP] [GO:0000910
"cytokinesis" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0016246 "RNA interference" evidence=IMP]
InterPro:IPR001241 InterPro:IPR002205 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00521 PRINTS:PR00418 PROSITE:PS00177
SMART:SM00433 SMART:SM00434 GO:GO:0005524 GO:GO:0009792
GO:GO:0016246 GO:GO:0006261 GO:GO:0000910 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312 EMBL:FO081697
GO:GO:0070683 GO:GO:0000712 GO:GO:0000795 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 KO:K03164 GeneTree:ENSGT00390000016222
EMBL:EU191083 RefSeq:NP_495440.4 UniGene:Cel.20522
ProteinModelPortal:G5ECQ8 SMR:G5ECQ8 EnsemblMetazoa:ZK1127.7
GeneID:191525 KEGG:cel:CELE_ZK1127.7 CTD:191525 WormBase:ZK1127.7
OMA:SISIRTM NextBio:949466 Uniprot:G5ECQ8
Length = 842
Score = 181 (68.8 bits), Expect = 2.3e-08, Sum P(4) = 2.3e-08
Identities = 54/168 (32%), Positives = 88/168 (52%)
Query: 33 ALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGETMGKYHPHGDVSIYDALVRM 92
++P + DGLKP R+VLFA + N + A V E + YH HG+ S+ +V +
Sbjct: 313 SIPCLVDGLKPGQRKVLFACFKRANKREVKVAQLAGAVAE-ISAYH-HGEQSLMGTIVNL 370
Query: 93 AQSF--SLRCTLVDGQGNFGS-IDG--DSAAAMRYTECRLNKISNELLIDLDKETIDFIS 147
AQ + S L+ G FG+ + G DSA+A R +L++++ L D + F+
Sbjct: 371 AQDYVGSHNINLLLPIGQFGTRLQGGKDSASA-RSIFAQLSQVTRTLFPAHDDNVLRFL- 428
Query: 148 NYDGKEK-EPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGV 194
Y+ ++ EP IP +L+NG+ G G +TNIP +N E++ +
Sbjct: 429 -YEENQRIEPEWYCPIIPMVLVNGAQGTGTGWSTNIPNYNPRELVKNI 475
Score = 50 (22.7 bits), Expect = 2.3e-08, Sum P(4) = 2.3e-08
Identities = 20/82 (24%), Positives = 36/82 (43%)
Query: 391 DNFIQI--IRSTSTPQEAKNKIIESTWNLPDVSKIIGFNKKNYNTISKINNISKLQNNDM 448
DN I+I + Q+ K K++E D + + K Y+T + + + KL +
Sbjct: 517 DNTIEITELPIKQWTQDYKEKVLEGLMESSDKKSPVIVDYKEYHTDTTVKFVVKLSPGKL 576
Query: 449 YKLSDIQ-AQEILKMPLQRLTN 469
+L Q ++ K LQ + N
Sbjct: 577 RELERGQDLHQVFK--LQAVIN 596
Score = 43 (20.2 bits), Expect = 2.3e-08, Sum P(4) = 2.3e-08
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 1115 IEEFKNDNGELEVKIGDFVSVAIESLEN 1142
++E + ++GE+E+ D +VA+E E+
Sbjct: 696 LKELR-ESGEIELDEDDLAAVAVEEGED 722
Score = 40 (19.1 bits), Expect = 2.1e-07, Sum P(4) = 2.1e-07
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 738 KQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRG 777
K+KV+ L+ ++ K+S + Y T +K K + G
Sbjct: 535 KEKVLEGLMESSDKKSPVIVDYKEYHTDTTVKFVVKLSPG 574
Score = 39 (18.8 bits), Expect = 2.3e-08, Sum P(4) = 2.3e-08
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 899 LSAINNNIQLDNELELVIL 917
L+ INN I L+N+ + I+
Sbjct: 656 LATINNKIVLENKKKTAIV 674
Score = 38 (18.4 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 681 IAVNLSNEDFLIGAAL 696
+ LS+ D+L+G AL
Sbjct: 730 VETKLSDYDYLVGLAL 745
Score = 37 (18.1 bits), Expect = 4.2e-07, Sum P(4) = 4.2e-07
Identities = 12/49 (24%), Positives = 27/49 (55%)
Query: 260 IIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVIELK 308
++D+ ++ + + ++ +Q KEK LE L + SDK ++++ K
Sbjct: 514 VLDDNTIEITELPI-KQWTQDYKEKVLE---GLMESSDKKSP-VIVDYK 557
>UNIPROTKB|G5ECQ8 [details] [associations]
symbol:cin-4 "Chromosome instability 4" species:6239
"Caenorhabditis elegans" [GO:0009295 "nucleoid" evidence=IBA]
[GO:0007059 "chromosome segregation" evidence=IBA] [GO:0006312
"mitotic recombination" evidence=IBA] [GO:0006265 "DNA topological
change" evidence=IBA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0000819 "sister
chromatid segregation" evidence=IBA] [GO:0000795 "synaptonemal
complex" evidence=IBA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR013757 InterPro:IPR013758
InterPro:IPR013759 InterPro:IPR013760 InterPro:IPR018522
Pfam:PF00521 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00433
SMART:SM00434 GO:GO:0005524 GO:GO:0009792 GO:GO:0016246
GO:GO:0006261 GO:GO:0000910 Gene3D:3.30.1360.40 InterPro:IPR024946
GO:GO:0000819 GO:GO:0006312 EMBL:FO081697 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
Gene3D:3.40.50.670 KO:K03164 GeneTree:ENSGT00390000016222
EMBL:EU191083 RefSeq:NP_495440.4 UniGene:Cel.20522
ProteinModelPortal:G5ECQ8 SMR:G5ECQ8 EnsemblMetazoa:ZK1127.7
GeneID:191525 KEGG:cel:CELE_ZK1127.7 CTD:191525 WormBase:ZK1127.7
OMA:SISIRTM NextBio:949466 Uniprot:G5ECQ8
Length = 842
Score = 181 (68.8 bits), Expect = 2.3e-08, Sum P(4) = 2.3e-08
Identities = 54/168 (32%), Positives = 88/168 (52%)
Query: 33 ALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGETMGKYHPHGDVSIYDALVRM 92
++P + DGLKP R+VLFA + N + A V E + YH HG+ S+ +V +
Sbjct: 313 SIPCLVDGLKPGQRKVLFACFKRANKREVKVAQLAGAVAE-ISAYH-HGEQSLMGTIVNL 370
Query: 93 AQSF--SLRCTLVDGQGNFGS-IDG--DSAAAMRYTECRLNKISNELLIDLDKETIDFIS 147
AQ + S L+ G FG+ + G DSA+A R +L++++ L D + F+
Sbjct: 371 AQDYVGSHNINLLLPIGQFGTRLQGGKDSASA-RSIFAQLSQVTRTLFPAHDDNVLRFL- 428
Query: 148 NYDGKEK-EPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGV 194
Y+ ++ EP IP +L+NG+ G G +TNIP +N E++ +
Sbjct: 429 -YEENQRIEPEWYCPIIPMVLVNGAQGTGTGWSTNIPNYNPRELVKNI 475
Score = 50 (22.7 bits), Expect = 2.3e-08, Sum P(4) = 2.3e-08
Identities = 20/82 (24%), Positives = 36/82 (43%)
Query: 391 DNFIQI--IRSTSTPQEAKNKIIESTWNLPDVSKIIGFNKKNYNTISKINNISKLQNNDM 448
DN I+I + Q+ K K++E D + + K Y+T + + + KL +
Sbjct: 517 DNTIEITELPIKQWTQDYKEKVLEGLMESSDKKSPVIVDYKEYHTDTTVKFVVKLSPGKL 576
Query: 449 YKLSDIQ-AQEILKMPLQRLTN 469
+L Q ++ K LQ + N
Sbjct: 577 RELERGQDLHQVFK--LQAVIN 596
Score = 43 (20.2 bits), Expect = 2.3e-08, Sum P(4) = 2.3e-08
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 1115 IEEFKNDNGELEVKIGDFVSVAIESLEN 1142
++E + ++GE+E+ D +VA+E E+
Sbjct: 696 LKELR-ESGEIELDEDDLAAVAVEEGED 722
Score = 40 (19.1 bits), Expect = 2.1e-07, Sum P(4) = 2.1e-07
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 738 KQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRG 777
K+KV+ L+ ++ K+S + Y T +K K + G
Sbjct: 535 KEKVLEGLMESSDKKSPVIVDYKEYHTDTTVKFVVKLSPG 574
Score = 39 (18.8 bits), Expect = 2.3e-08, Sum P(4) = 2.3e-08
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 899 LSAINNNIQLDNELELVIL 917
L+ INN I L+N+ + I+
Sbjct: 656 LATINNKIVLENKKKTAIV 674
Score = 38 (18.4 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 681 IAVNLSNEDFLIGAAL 696
+ LS+ D+L+G AL
Sbjct: 730 VETKLSDYDYLVGLAL 745
Score = 37 (18.1 bits), Expect = 4.2e-07, Sum P(4) = 4.2e-07
Identities = 12/49 (24%), Positives = 27/49 (55%)
Query: 260 IIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVIELK 308
++D+ ++ + + ++ +Q KEK LE L + SDK ++++ K
Sbjct: 514 VLDDNTIEITELPI-KQWTQDYKEKVLE---GLMESSDKKSP-VIVDYK 557
>UNIPROTKB|Q81VX9 [details] [associations]
symbol:BAS0060 "S1 RNA binding domain protein" species:1392
"Bacillus anthracis" [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003029 Pfam:PF00575 PROSITE:PS50126 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 HOGENOM:HOG000217052
KO:K07571 OMA:TGITHFG ProtClustDB:PRK08582 RefSeq:NP_842629.1
RefSeq:YP_016663.1 RefSeq:YP_026347.1 ProteinModelPortal:Q81VX9
IntAct:Q81VX9 DNASU:1086747 EnsemblBacteria:EBBACT00000012087
EnsemblBacteria:EBBACT00000017904 EnsemblBacteria:EBBACT00000019266
GeneID:1086747 GeneID:2814985 GeneID:2852426 KEGG:ban:BA_0060
KEGG:bar:GBAA_0060 KEGG:bat:BAS0060
BioCyc:BANT260799:GJAJ-67-MONOMER BioCyc:BANT261594:GJ7F-69-MONOMER
Uniprot:Q81VX9
Length = 160
Score = 141 (54.7 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 30/76 (39%), Positives = 53/76 (69%)
Query: 1342 GTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEM-DWINKNVTPSKIVQLNDTVEIMILEI 1400
G++L GKVT +T++GAFVE+ +G+ GLVHISE+ D K++ +++ D VE+ ++ +
Sbjct: 6 GSKLQGKVTGITNFGAFVELPEGLTGLVHISEVADNYVKDINDH--LKVGDQVEVKVINV 63
Query: 1401 NEERRRISLGMKQCKD 1416
E+ +I L +K+ K+
Sbjct: 64 -EKDGKIGLSIKKAKE 78
Score = 117 (46.2 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 22/75 (29%), Positives = 49/75 (65%)
Query: 1253 TLKEGCTVKGVVKNITDYGAFIDLG-GIDGLLHITDIAWRRVKHPSEILTIGQDISTKIL 1311
+++ G ++G V IT++GAF++L G+ GL+HI+++A VK ++ L +G + K++
Sbjct: 2 SIEVGSKLQGKVTGITNFGAFVELPEGLTGLVHISEVADNYVKDINDHLKVGDQVEVKVI 61
Query: 1312 KYDQEKNRVSLGMKQ 1326
+++ ++ L +K+
Sbjct: 62 NVEKD-GKIGLSIKK 75
>TIGR_CMR|BA_0060 [details] [associations]
symbol:BA_0060 "S1 RNA binding domain protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003029 Pfam:PF00575 PROSITE:PS50126
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 HOGENOM:HOG000217052
KO:K07571 OMA:TGITHFG ProtClustDB:PRK08582 RefSeq:NP_842629.1
RefSeq:YP_016663.1 RefSeq:YP_026347.1 ProteinModelPortal:Q81VX9
IntAct:Q81VX9 DNASU:1086747 EnsemblBacteria:EBBACT00000012087
EnsemblBacteria:EBBACT00000017904 EnsemblBacteria:EBBACT00000019266
GeneID:1086747 GeneID:2814985 GeneID:2852426 KEGG:ban:BA_0060
KEGG:bar:GBAA_0060 KEGG:bat:BAS0060
BioCyc:BANT260799:GJAJ-67-MONOMER BioCyc:BANT261594:GJ7F-69-MONOMER
Uniprot:Q81VX9
Length = 160
Score = 141 (54.7 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 30/76 (39%), Positives = 53/76 (69%)
Query: 1342 GTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEM-DWINKNVTPSKIVQLNDTVEIMILEI 1400
G++L GKVT +T++GAFVE+ +G+ GLVHISE+ D K++ +++ D VE+ ++ +
Sbjct: 6 GSKLQGKVTGITNFGAFVELPEGLTGLVHISEVADNYVKDINDH--LKVGDQVEVKVINV 63
Query: 1401 NEERRRISLGMKQCKD 1416
E+ +I L +K+ K+
Sbjct: 64 -EKDGKIGLSIKKAKE 78
Score = 117 (46.2 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 22/75 (29%), Positives = 49/75 (65%)
Query: 1253 TLKEGCTVKGVVKNITDYGAFIDLG-GIDGLLHITDIAWRRVKHPSEILTIGQDISTKIL 1311
+++ G ++G V IT++GAF++L G+ GL+HI+++A VK ++ L +G + K++
Sbjct: 2 SIEVGSKLQGKVTGITNFGAFVELPEGLTGLVHISEVADNYVKDINDHLKVGDQVEVKVI 61
Query: 1312 KYDQEKNRVSLGMKQ 1326
+++ ++ L +K+
Sbjct: 62 NVEKD-GKIGLSIKK 75
>WB|WBGene00010785 [details] [associations]
symbol:top-2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0051301 "cell division" evidence=IMP] [GO:0000910
"cytokinesis" evidence=IMP] InterPro:IPR001241 InterPro:IPR002205
InterPro:IPR003594 InterPro:IPR013506 InterPro:IPR013757
InterPro:IPR013758 InterPro:IPR013759 InterPro:IPR013760
InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521 Pfam:PF02518
PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387 SMART:SM00433
SMART:SM00434 Pfam:PF01751 InterPro:IPR006171 GO:GO:0005524
GO:GO:0009792 GO:GO:0006261 GO:GO:0000910 Gene3D:3.30.565.10
SUPFAM:SSF55874 Gene3D:3.30.230.10 InterPro:IPR020568
InterPro:IPR014721 SUPFAM:SSF54211 Gene3D:3.30.1360.40
InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312 GO:GO:0070683
GO:GO:0000712 GO:GO:0000795 GO:GO:0006265 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
HOGENOM:HOG000216693 GeneTree:ENSGT00390000016222 EMBL:Z49069
EMBL:Z70213 PIR:T23620 RefSeq:NP_496536.1 ProteinModelPortal:Q23670
SMR:Q23670 DIP:DIP-27416N IntAct:Q23670 MINT:MINT-227249
STRING:Q23670 PaxDb:Q23670 EnsemblMetazoa:K12D12.1 GeneID:174825
KEGG:cel:CELE_K12D12.1 CTD:174825 WormBase:K12D12.1
InParanoid:Q23670 OMA:ADNKQND NextBio:885666 Uniprot:Q23670
Length = 1520
Score = 188 (71.2 bits), Expect = 4.0e-08, Sum P(3) = 4.0e-08
Identities = 55/169 (32%), Positives = 89/169 (52%)
Query: 32 RALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGETMGKYHPHGDVSIYDALVR 91
R++P + DG KP R+VLFA + + + A V E + YH HG+ S+ +V
Sbjct: 748 RSIPCLVDGFKPGQRKVLFACFKRADKREVKVAQLAGAVAE-ISAYH-HGEQSLMGTIVN 805
Query: 92 MAQSF--SLRCTLVDGQGNFGS-IDG--DSAAAMRYTECRLNKISNELLIDLDKETIDFI 146
+AQ + S L+ G FG+ + G DSA+A RY +L+ ++ L D + F+
Sbjct: 806 LAQDYVGSNNINLLLPIGQFGTRLQGGKDSASA-RYIFTQLSPVTRTLFPAHDDNVLRFL 864
Query: 147 SNYDGKEK-EPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGV 194
Y+ ++ EP IP +L+NG+ GI G +TNIP +N E++ +
Sbjct: 865 --YEENQRIEPEWYCPIIPMVLVNGAQGIGTGWSTNIPNYNPRELVKNI 911
Score = 50 (22.7 bits), Expect = 4.0e-08, Sum P(3) = 4.0e-08
Identities = 20/82 (24%), Positives = 36/82 (43%)
Query: 391 DNFIQI--IRSTSTPQEAKNKIIESTWNLPDVSKIIGFNKKNYNTISKINNISKLQNNDM 448
DN I+I + Q+ K K++E D + + K Y+T + + + KL +
Sbjct: 953 DNTIEITELPIKQWTQDYKEKVLEGLMESSDKKSPVIVDYKEYHTDTTVKFVVKLSPGKL 1012
Query: 449 YKLSDIQ-AQEILKMPLQRLTN 469
+L Q ++ K LQ + N
Sbjct: 1013 RELERGQDLHQVFK--LQAVIN 1032
Score = 42 (19.8 bits), Expect = 1.2e-07, Sum P(4) = 1.2e-07
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 1115 IEEFKNDNGELEVKIGDFVSVAIESLE 1141
++E + ++GE+E+ D +VA+E E
Sbjct: 1132 LKELR-ESGEIELDEDDLAAVAVEEDE 1157
Score = 40 (19.1 bits), Expect = 5.0e-07, Sum P(3) = 5.0e-07
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 450 KLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKV 486
KLSD ++ M L +L+ E+ K+I + E + +V
Sbjct: 1169 KLSDYDY--LVGMALIKLSEEEKNKLIKESEEKMAEV 1203
Score = 40 (19.1 bits), Expect = 1.1e-06, Sum P(4) = 1.1e-06
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 738 KQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRG 777
K+KV+ L+ ++ K+S + Y T +K K + G
Sbjct: 971 KEKVLEGLMESSDKKSPVIVDYKEYHTDTTVKFVVKLSPG 1010
Score = 38 (18.4 bits), Expect = 4.0e-08, Sum P(3) = 4.0e-08
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 681 IAVNLSNEDFLIGAAL 696
+ LS+ D+L+G AL
Sbjct: 1166 VETKLSDYDYLVGMAL 1181
Score = 38 (18.4 bits), Expect = 1.2e-07, Sum P(4) = 1.2e-07
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 899 LSAINNNIQLDNELELVIL 917
L+ INN I L+N+ + I+
Sbjct: 1092 LAKINNEIVLENKKKAAIV 1110
Score = 37 (18.1 bits), Expect = 5.0e-07, Sum P(3) = 5.0e-07
Identities = 12/49 (24%), Positives = 27/49 (55%)
Query: 260 IIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVIELK 308
++D+ ++ + + ++ +Q KEK LE L + SDK ++++ K
Sbjct: 950 VLDDNTIEITELPI-KQWTQDYKEKVLE---GLMESSDKKSP-VIVDYK 993
>UNIPROTKB|Q23670 [details] [associations]
symbol:K12D12.1 "Probable DNA topoisomerase 2" species:6239
"Caenorhabditis elegans" [GO:0009295 "nucleoid" evidence=IBA]
[GO:0007059 "chromosome segregation" evidence=IBA] [GO:0006312
"mitotic recombination" evidence=IBA] [GO:0006265 "DNA topological
change" evidence=IBA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0000819 "sister
chromatid segregation" evidence=IBA] [GO:0000795 "synaptonemal
complex" evidence=IBA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] InterPro:IPR001241
InterPro:IPR002205 InterPro:IPR003594 InterPro:IPR013506
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013759
InterPro:IPR013760 InterPro:IPR018522 Pfam:PF00204 Pfam:PF00521
Pfam:PF02518 PRINTS:PR00418 PROSITE:PS00177 SMART:SM00387
SMART:SM00433 SMART:SM00434 Pfam:PF01751 InterPro:IPR006171
GO:GO:0005524 GO:GO:0009792 GO:GO:0006261 GO:GO:0000910
Gene3D:3.30.565.10 SUPFAM:SSF55874 Gene3D:3.30.230.10
InterPro:IPR020568 InterPro:IPR014721 SUPFAM:SSF54211
Gene3D:3.30.1360.40 InterPro:IPR024946 GO:GO:0000819 GO:GO:0006312
GO:GO:0070683 GO:GO:0000712 GO:GO:0000795 GO:GO:0006265
GO:GO:0003918 Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10
eggNOG:COG0187 Gene3D:3.40.50.670 PROSITE:PS50880 KO:K03164
HOGENOM:HOG000216693 GeneTree:ENSGT00390000016222 EMBL:Z49069
EMBL:Z70213 PIR:T23620 RefSeq:NP_496536.1 ProteinModelPortal:Q23670
SMR:Q23670 DIP:DIP-27416N IntAct:Q23670 MINT:MINT-227249
STRING:Q23670 PaxDb:Q23670 EnsemblMetazoa:K12D12.1 GeneID:174825
KEGG:cel:CELE_K12D12.1 CTD:174825 WormBase:K12D12.1
InParanoid:Q23670 OMA:ADNKQND NextBio:885666 Uniprot:Q23670
Length = 1520
Score = 188 (71.2 bits), Expect = 4.0e-08, Sum P(3) = 4.0e-08
Identities = 55/169 (32%), Positives = 89/169 (52%)
Query: 32 RALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGETMGKYHPHGDVSIYDALVR 91
R++P + DG KP R+VLFA + + + A V E + YH HG+ S+ +V
Sbjct: 748 RSIPCLVDGFKPGQRKVLFACFKRADKREVKVAQLAGAVAE-ISAYH-HGEQSLMGTIVN 805
Query: 92 MAQSF--SLRCTLVDGQGNFGS-IDG--DSAAAMRYTECRLNKISNELLIDLDKETIDFI 146
+AQ + S L+ G FG+ + G DSA+A RY +L+ ++ L D + F+
Sbjct: 806 LAQDYVGSNNINLLLPIGQFGTRLQGGKDSASA-RYIFTQLSPVTRTLFPAHDDNVLRFL 864
Query: 147 SNYDGKEK-EPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGV 194
Y+ ++ EP IP +L+NG+ GI G +TNIP +N E++ +
Sbjct: 865 --YEENQRIEPEWYCPIIPMVLVNGAQGIGTGWSTNIPNYNPRELVKNI 911
Score = 50 (22.7 bits), Expect = 4.0e-08, Sum P(3) = 4.0e-08
Identities = 20/82 (24%), Positives = 36/82 (43%)
Query: 391 DNFIQI--IRSTSTPQEAKNKIIESTWNLPDVSKIIGFNKKNYNTISKINNISKLQNNDM 448
DN I+I + Q+ K K++E D + + K Y+T + + + KL +
Sbjct: 953 DNTIEITELPIKQWTQDYKEKVLEGLMESSDKKSPVIVDYKEYHTDTTVKFVVKLSPGKL 1012
Query: 449 YKLSDIQ-AQEILKMPLQRLTN 469
+L Q ++ K LQ + N
Sbjct: 1013 RELERGQDLHQVFK--LQAVIN 1032
Score = 42 (19.8 bits), Expect = 1.2e-07, Sum P(4) = 1.2e-07
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 1115 IEEFKNDNGELEVKIGDFVSVAIESLE 1141
++E + ++GE+E+ D +VA+E E
Sbjct: 1132 LKELR-ESGEIELDEDDLAAVAVEEDE 1157
Score = 40 (19.1 bits), Expect = 5.0e-07, Sum P(3) = 5.0e-07
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 450 KLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKV 486
KLSD ++ M L +L+ E+ K+I + E + +V
Sbjct: 1169 KLSDYDY--LVGMALIKLSEEEKNKLIKESEEKMAEV 1203
Score = 40 (19.1 bits), Expect = 1.1e-06, Sum P(4) = 1.1e-06
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 738 KQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRG 777
K+KV+ L+ ++ K+S + Y T +K K + G
Sbjct: 971 KEKVLEGLMESSDKKSPVIVDYKEYHTDTTVKFVVKLSPG 1010
Score = 38 (18.4 bits), Expect = 4.0e-08, Sum P(3) = 4.0e-08
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 681 IAVNLSNEDFLIGAAL 696
+ LS+ D+L+G AL
Sbjct: 1166 VETKLSDYDYLVGMAL 1181
Score = 38 (18.4 bits), Expect = 1.2e-07, Sum P(4) = 1.2e-07
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 899 LSAINNNIQLDNELELVIL 917
L+ INN I L+N+ + I+
Sbjct: 1092 LAKINNEIVLENKKKAAIV 1110
Score = 37 (18.1 bits), Expect = 5.0e-07, Sum P(3) = 5.0e-07
Identities = 12/49 (24%), Positives = 27/49 (55%)
Query: 260 IIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVIELK 308
++D+ ++ + + ++ +Q KEK LE L + SDK ++++ K
Sbjct: 950 VLDDNTIEITELPI-KQWTQDYKEKVLE---GLMESSDKKSP-VIVDYK 993
>TAIR|locus:2010336 [details] [associations]
symbol:AT1G12800 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0006098 "pentose-phosphate
shunt" evidence=RCA] [GO:0006655 "phosphatidylglycerol biosynthetic
process" evidence=RCA] [GO:0009073 "aromatic amino acid family
biosynthetic process" evidence=RCA] [GO:0009902 "chloroplast
relocation" evidence=RCA] [GO:0010027 "thylakoid membrane
organization" evidence=RCA] [GO:0015995 "chlorophyll biosynthetic
process" evidence=RCA] [GO:0016117 "carotenoid biosynthetic
process" evidence=RCA] [GO:0019252 "starch biosynthetic process"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0019344
"cysteine biosynthetic process" evidence=RCA] [GO:0034660 "ncRNA
metabolic process" evidence=RCA] [GO:0042793 "transcription from
plastid promoter" evidence=RCA] InterPro:IPR003029 Pfam:PF00575
PROSITE:PS50126 EMBL:CP002684 GO:GO:0009507 GO:GO:0006950
GO:GO:0003723 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 EMBL:AY045991
EMBL:BT001968 EMBL:AB493452 IPI:IPI00516731 RefSeq:NP_172740.1
UniGene:At.25318 ProteinModelPortal:Q94AJ9 SMR:Q94AJ9 STRING:Q94AJ9
PRIDE:Q94AJ9 EnsemblPlants:AT1G12800.1 GeneID:837836
KEGG:ath:AT1G12800 TAIR:At1g12800 InParanoid:Q94AJ9 OMA:YFGIFVE
PhylomeDB:Q94AJ9 ProtClustDB:CLSN2682470 ArrayExpress:Q94AJ9
Genevestigator:Q94AJ9 Uniprot:Q94AJ9
Length = 767
Score = 173 (66.0 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 47/170 (27%), Positives = 85/170 (50%)
Query: 1162 SLEKAMESGEIITGTINGKVKGGLTVLTNGLKAFLPGSLVDIRPVKDTTPFEGKTMDFKV 1221
S + +++S E+ T TING+V + L+ L + D K + F G+ + V
Sbjct: 496 SPDSSLDS-EVAT-TINGEVSSDMK-----LEDLL--MVYDREKQKFLSSFVGQKIKVNV 546
Query: 1222 IKLDRKRNNVVLSHRAVIEESMGEERQKLIETLKEGCTVKGVVKNITDYGAFIDLGGIDG 1281
+ +R ++ S R E E+++ L+ L+ G VK +K IT +G F +L G+
Sbjct: 547 VMANRNSRKLIFSMRPRENEEEVEKKRTLMAKLRVGDVVKCCIKKITYFGIFCELEGVPA 606
Query: 1282 LLHITDIAWRRVKHPSEILTIGQDISTKILKYDQEKNRVSLGMKQLGIDP 1331
L+H ++++W P+ IGQ + K+ + D R+ L +K++ DP
Sbjct: 607 LVHQSEVSWDATLDPASYFKIGQIVEAKVHQLDFALERIFLSLKEITPDP 656
Score = 44 (20.5 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 289 ISNLRDESDKSGMRIVIELKRNEIP-EIVLNKLYKQTQLQNTFGMNMLALVNGQP 342
+ N+ E SG+ E++ N IP E+ LN + + + T + L + +P
Sbjct: 302 LENIEKEVADSGVLESSEIENNSIPTEMQLNS--EMSSEEKTINSDPLERIPSKP 354
Score = 40 (19.1 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 521 IRRSEIILNAINPSTEDL---IASQDMVITLSNLGYIKSQPISE 561
+ SEI N+I P+ L ++S++ I L I S+PIS+
Sbjct: 315 LESSEIENNSI-PTEMQLNSEMSSEEKTINSDPLERIPSKPISQ 357
>CGD|CAL0005606 [details] [associations]
symbol:orf19.1578 species:5476 "Candida albicans" [GO:0030686
"90S preribosome" evidence=IEA] [GO:0032040 "small-subunit
processome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR003029
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF00575 PROSITE:PS50126 PROSITE:PS50293 SMART:SM00386
CGD:CAL0005606 GO:GO:0003723 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 Gene3D:2.40.50.140 InterPro:IPR012340
EMBL:AACQ01000008 EMBL:AACQ01000007 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539 KO:K14792
RefSeq:XP_722479.1 RefSeq:XP_722620.1 ProteinModelPortal:Q5ALK0
STRING:Q5ALK0 GeneID:3635820 GeneID:3635933 KEGG:cal:CaO19.1578
KEGG:cal:CaO19.9151 Uniprot:Q5ALK0
Length = 1722
Score = 192 (72.6 bits), Expect = 5.9e-08, Sum P(3) = 5.9e-08
Identities = 84/350 (24%), Positives = 150/350 (42%)
Query: 1168 ESGEIITGTINGKVKGGLTV-LTNGLKAFLPGSLVDIRPVKDTTPFEGKTMDFKVIK-LD 1225
+ G+ + +N G + V ++ +K +P ++D+ +D + F+ + ++
Sbjct: 974 KQGDEVLAFVNNITNGMVWVSISPTIKGRIP--MLDL--TEDGSIFQDIDNKLPIGNAIN 1029
Query: 1226 RKRNNVVLSHRAVIEESMGEERQKLIETLKEGCTVKGVVKNITDYGAFIDLGG-IDGLLH 1284
K V L H+ ++ + +K E +++ T + I ++LG +
Sbjct: 1030 VKVKQVDLQHQILVLTARKNFIEKF-EDVRQDQTYPARIIKIKPNHVLVELGNNVIASSF 1088
Query: 1285 ITDIAWRRVKHPSEILTIGQDISTKILKYDQEKNRVSLGMK--QLGIDPWIGLSFRYPRG 1342
+TD + + +S K+L D R+S+ ++ + G D I RG
Sbjct: 1089 VTDALNDYSDKLDHVFNVNDYVSAKVLDIDSTNKRISVSLRTDKAGSDKVINSISDLTRG 1148
Query: 1343 TRLLGKVTNLTDYGAFVEIEKGIEGLVHISEM------DWIN--KNVTP--SKIVQLNDT 1392
+ G V N+++ G +V + + I LV +S++ DW N K P KIV
Sbjct: 1149 QVIKGFVKNISNNGVYVSLGRSIYALVRVSDLSDSYLKDWQNFFKPNQPVIGKIVNCKQE 1208
Query: 1393 VEI-MILEINEERRRISLGMKQCKDNPWENFXXXXXXXXXXXXXXXXXTDFGIFIGLDG- 1450
I M L+ +E + + MK D TDFG+F+ LDG
Sbjct: 1209 GRILMTLKESEVNGELKI-MKTFDD---------LQIGDIFEGTVTSTTDFGVFVKLDGT 1258
Query: 1451 -NIDGLIHLSDLSWTDPGEEIIRNFKKGDEIEAIILSIDVEKERISLGIK 1499
N+ GL H S++S D + + F GD ++ IL ID EK ++SLG+K
Sbjct: 1259 VNVSGLCHHSEISENDV-DNVKSLFGTGDRVKVKILKIDSEKRQLSLGMK 1307
Score = 176 (67.0 bits), Expect = 8.5e-07, Sum P(2) = 8.5e-07
Identities = 111/503 (22%), Positives = 219/503 (43%)
Query: 1018 SVSMSDLLINLIKRDIRDKTRNLSPLKCPEQAHLL-NTSKMNINQVVNQILDCFATLFKE 1076
++++S + N ++++ K S +K A LL N +K I ++ +L +
Sbjct: 341 TIALSQIQ-NFELKELKHKYAIGSTVKARVLAVLLKNGTKKLILSILPHVLQLGDDSSQT 399
Query: 1077 SLLRHDMRSGEVIS-AEVIGLDRNFVIINADLKSEAFIPIEEFKNDNGE--LEVKIGDFV 1133
L G V +VIG D+++V ++ S F I + K D+ + L+ IG
Sbjct: 400 EALEA-FPIGHVFDQVKVIGNDKHYVYVSFG-SSSLFGQIHQSKFDDNKSLLDYSIGSTH 457
Query: 1134 SVAIESLENGFGDTILSRDKAKRL-ASWLSLEKAMESGEIITGTINGKV--KG-GLTV-L 1188
+ N + ++ ++K + A +L++ + + G+++ KV G G+ V
Sbjct: 458 KSRVIGF-NEVDNLLILTFESKVIDAEYLNV-RDVPIGKLLPNVEILKVLEDGVGINVKF 515
Query: 1189 TNGLKAFLPGS-LVDIRPVKDTTPFE-GKTMDFKVIKLDRKRNNVVLSHRAVIEESMGEE 1246
+ K F+PG+ + DI+ V F G +++ + KR +++ R + +E
Sbjct: 516 FDEFKGFVPGNQMSDIKLVYPERKFRVGTKTKGRLLNYNGKR--ALVTFRKALVNLEDDE 573
Query: 1247 RQKLIETLKEGCTVKGVVKNITDYGAFIDL-GGIDGLLHITDIAWRRVKHPSEILTIGQD 1305
I+ + G +V+ G + G + L T+I+ V+ S L IGQ
Sbjct: 574 ILSDIDQAEIGFKTNAIVEKFVPNGCIVSFFGNLKAFLPKTEISETFVQDASSYLKIGQI 633
Query: 1306 ISTKILKYDQEKNRVSLGMKQ---LGIDPWIGLSFRYPRGTRLLGKVT-NLTDYGAFVEI 1361
+ +IL ++E+ R+ + +KQ L +S + G ++ V T VE+
Sbjct: 634 VKVRILDVNKEQKRLVVTLKQSSELSNAQKNEIS-KLVSGKSIVKTVVVEKTKDSVLVEL 692
Query: 1362 EKG-IEGLVHISEMDWIN--KNVTPSKIVQLNDTVEIMILEINEERRR-ISLGMKQCKD- 1416
E + G+++ ++ N +N +K + + +T+E++IL+ + + R I+ K D
Sbjct: 693 EGSHLRGVIYDGQLSDGNYEQNRALAKRLAIGETLEVLILDKDLKARTVIATAKKSLIDA 752
Query: 1417 NPWENF---XXXXXXXXXXXXXXXXXTDFGIFIGLDGNIDGLIHLSDLSWTDPGEEIIRN 1473
+ ++F T G+F+ G + GLI L+ + E++ +
Sbjct: 753 SKSKSFPVEFSDIAVNDVVRGYVKSVTSLGLFVTFTGRLTGLI-LAKYVTKNANEDLSKK 811
Query: 1474 FKKGDEIEAIILSIDVEKERISL 1496
F K I +LS+D E ER L
Sbjct: 812 FHKYQSINCRVLSVDKENERFLL 834
Score = 159 (61.0 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 69/286 (24%), Positives = 126/286 (44%)
Query: 1053 NTSKMNINQVVNQILDCFATLFKESLLR-HDMRSGEVISAEVIGLDRNFVIINADLKSEA 1111
N + + QV Q T K + + D+R + A +I + N V++ A
Sbjct: 1026 NAINVKVKQVDLQHQILVLTARKNFIEKFEDVRQDQTYPARIIKIKPNHVLVELGNNVIA 1085
Query: 1112 FIPIEEFKND-NGELE--VKIGDFVSVAIESLE--NGFGDTILSRDKAKRLASWLSLEKA 1166
+ + ND + +L+ + D+VS + ++ N L DKA S+
Sbjct: 1086 SSFVTDALNDYSDKLDHVFNVNDYVSAKVLDIDSTNKRISVSLRTDKAGSDKVINSISD- 1144
Query: 1167 MESGEIITGTINGKVKGGLTV-LTNGLKAFLPGSLVDIRPVKDTTPF--EGKTMDFKVIK 1223
+ G++I G + G+ V L + A + S + +KD F + + K++
Sbjct: 1145 LTRGQVIKGFVKNISNNGVYVSLGRSIYALVRVSDLSDSYLKDWQNFFKPNQPVIGKIVN 1204
Query: 1224 LDRKRNNVVLSHRAVIEESMGEER-QKLIETLKEGCTVKGVVKNITDYGAFIDLGG---I 1279
++ ++++ + E GE + K + L+ G +G V + TD+G F+ L G +
Sbjct: 1205 C-KQEGRILMTLKE--SEVNGELKIMKTFDDLQIGDIFEGTVTSTTDFGVFVKLDGTVNV 1261
Query: 1280 DGLLHITDIAWRRVKHPSEILTIGQDISTKILKYDQEKNRVSLGMK 1325
GL H ++I+ V + + G + KILK D EK ++SLGMK
Sbjct: 1262 SGLCHHSEISENDVDNVKSLFGTGDRVKVKILKIDSEKRQLSLGMK 1307
Score = 42 (19.8 bits), Expect = 5.9e-08, Sum P(3) = 5.9e-08
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 118 AAMRYTECRLNKISNELLIDLDKETIDFISN 148
A + + + +N +E+L D+D+ I F +N
Sbjct: 558 ALVTFRKALVNLEDDEILSDIDQAEIGFKTN 588
Score = 42 (19.8 bits), Expect = 5.9e-08, Sum P(3) = 5.9e-08
Identities = 14/84 (16%), Positives = 33/84 (39%)
Query: 374 REYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVS-KIIGFNKKNYN 432
R Y + L + +T +I + + A + + ++ +++ +K+N
Sbjct: 772 RGYVKSVTSLGLFVTFTGRLTGLILAKYVTKNANEDLSKKFHKYQSINCRVLSVDKENER 831
Query: 433 TISKINNISKLQNNDMYKLSDIQA 456
+ +NN S +D + I A
Sbjct: 832 FLLTLNNSSSFTKDDEQLIKPIDA 855
Score = 41 (19.5 bits), Expect = 7.4e-08, Sum P(3) = 7.4e-08
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 995 IFLTADIKQRT--KRRYKQLMQ----KGFSVSMSDLLINLIKR 1031
+ L D+K RT K L+ K F V SD+ +N + R
Sbjct: 730 LILDKDLKARTVIATAKKSLIDASKSKSFPVEFSDIAVNDVVR 772
Score = 39 (18.8 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 13/53 (24%), Positives = 26/53 (49%)
Query: 87 DALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTECRLNKISNELLIDLD 139
D+++ + LR + DGQ + G+ + + A A R + + L++D D
Sbjct: 686 DSVLVELEGSHLRGVIYDGQLSDGNYEQNRALAKRLA---IGETLEVLILDKD 735
Score = 38 (18.4 bits), Expect = 1.9e-07, Sum P(3) = 1.9e-07
Identities = 21/96 (21%), Positives = 42/96 (43%)
Query: 414 TWNLPDVSKIIGFNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILK---------MPL 464
T NL + + K +TIS I++I D ++D+ ++ + L
Sbjct: 286 TINLKPTTATVSAKKTTVSTISSIDSIQPGVIVDAL-INDVTENGLVTKVYGLVDGTIAL 344
Query: 465 QRLTNMEQKKIINKYE--NVIKKVIDLTDILSNSKR 498
++ N E K++ +KY + +K + L +L N +
Sbjct: 345 SQIQNFELKELKHKYAIGSTVKARV-LAVLLKNGTK 379
>UNIPROTKB|Q724J5 [details] [associations]
symbol:LMOf2365_0229 "RNA-binding protein" species:265669
"Listeria monocytogenes serotype 4b str. F2365" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR003029 Pfam:PF00575
PROSITE:PS50126 GO:GO:0003723 EMBL:AE017262
GenomeReviews:AE017262_GR Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 eggNOG:COG1098
HOGENOM:HOG000217052 RefSeq:YP_012839.1 ProteinModelPortal:Q724J5
STRING:Q724J5 GeneID:2797347 KEGG:lmf:LMOf2365_0229 PATRIC:20321637
KO:K07571 OMA:TGITHFG ProtClustDB:PRK08582 Uniprot:Q724J5
Length = 142
Score = 138 (53.6 bits), Expect = 7.3e-08, P = 7.3e-08
Identities = 31/78 (39%), Positives = 51/78 (65%)
Query: 1342 GTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEM-DWINKNVTPSKIVQLNDTVEIMILEI 1400
G +L GKVT +T++GAFVE+E G GLVHISE+ D K++ + I+ + D V + ++ I
Sbjct: 6 GNKLQGKVTGITNFGAFVELEGGKTGLVHISEVADNYVKDI--NDILTVGDEVTVKVMNI 63
Query: 1401 NEERRRISLGMKQCKDNP 1418
++ + I L +++ D P
Sbjct: 64 GDDGK-IGLSIRKAVDRP 80
Score = 127 (49.8 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 24/75 (32%), Positives = 51/75 (68%)
Query: 1253 TLKEGCTVKGVVKNITDYGAFIDL-GGIDGLLHITDIAWRRVKHPSEILTIGQDISTKIL 1311
+++ G ++G V IT++GAF++L GG GL+HI+++A VK ++ILT+G +++ K++
Sbjct: 2 SIEVGNKLQGKVTGITNFGAFVELEGGKTGLVHISEVADNYVKDINDILTVGDEVTVKVM 61
Query: 1312 KYDQEKNRVSLGMKQ 1326
+ ++ L +++
Sbjct: 62 NIGDD-GKIGLSIRK 75
>POMBASE|SPCC1183.07 [details] [associations]
symbol:SPCC1183.07 "U3 snoRNP-associated protein Rrp5
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005730
"nucleolus" evidence=IDA] [GO:0006364 "rRNA processing"
evidence=ISO] [GO:0030515 "snoRNA binding" evidence=ISO]
[GO:0032040 "small-subunit processome" evidence=ISO] [GO:0042134
"rRNA primary transcript binding" evidence=ISO] InterPro:IPR003029
InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126 SMART:SM00386
PomBase:SPCC1183.07 GO:GO:0005730 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0030515 GO:GO:0006397
Gene3D:1.25.40.10 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0006364 GO:GO:0042134 GO:GO:0032040
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 eggNOG:COG0539
KO:K14792 OMA:LHLADIY PIR:T40847 RefSeq:NP_587890.1
ProteinModelPortal:O74835 STRING:O74835 EnsemblFungi:SPCC1183.07.1
GeneID:2538897 KEGG:spo:SPCC1183.07 HOGENOM:HOG000167551
OrthoDB:EOG4N07P1 NextBio:20800076 Uniprot:O74835
Length = 1690
Score = 179 (68.1 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 73/338 (21%), Positives = 149/338 (44%)
Query: 1211 PFE-GKTMDFKVIKLDRKRNNVVLSHRAVIEESMGEERQKLIETLKEGCTVKGVVKNITD 1269
P++ T + ++I N +LS ++S+ ++ IE ++ G V G + +
Sbjct: 447 PYKVDSTHEARIINYSYVDNLYILS----FQQSVLNQQFLRIEDIEVGQFVDGTIAKLIP 502
Query: 1270 YGAFIDLG-GIDGLLHITDIAWRRVKHPSEILTIGQDISTKILKYDQEKNRVSLGMKQLG 1328
G + + GI+GL+ T +A ++ P +G + ++L + + RV L +K+
Sbjct: 503 QGIVVTISEGINGLVPSTHMADIALQFPERRFKVGSSVKCRVLSTNVLRKRVLLTLKKSL 562
Query: 1329 IDPWIGLSFRYPR---GTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEMD--WINKNVTP 1383
++ + L + Y + GT+ +G + + + GA VE + + +SEM +I
Sbjct: 563 LNTDLPLIYDYEQATPGTQTVGTLARIFEDGAIVEFYNSVRAFLPVSEMSEAYIRDAREH 622
Query: 1384 SKIVQLNDTVEIMILEINEERRRISLGMKQCKDNPW-----ENFXXXXXXXXXXXXXXXX 1438
K+ Q T+ + I+ + E R++ +G C++ W E F
Sbjct: 623 FKVGQ---TLSVTIVSCDPENRKMRVG---CREQSWDAKRLERFENIKAGSVLSGIVLQK 676
Query: 1439 XTDFGIFIGLDGNIDGLIHLSDLSWTDPGE--EIIRNFKKGDEI-EAIILSIDVEKERIS 1495
D + + L + G+I L L D + +++ + ++ E ++L D K+ IS
Sbjct: 677 TED-SVIVDLGDKVTGVITLGQLCDGDLNKCSKVMNKLRASTKLAEVLVLRKDTSKKLIS 735
Query: 1496 LGIKQ--LEGDPFNNY-VNIND--KGSLVNGIIKSIDT 1528
L +K+ +E N +NI D +G G +++ T
Sbjct: 736 LSLKKSLVEAAKENRMPINITDLKEGIKYFGFVRNATT 773
Score = 178 (67.7 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 101/418 (24%), Positives = 174/418 (41%)
Query: 1164 EKAMESGEIITGTINGKVKGGLTV-LTNGLKAFLPGSLVDIRP-VKDTTPFEGKTMDFKV 1221
E + G+ +TG +N K + V LT + +P ++D+ VK+ + K
Sbjct: 967 EPQFKKGDEVTGFVNNVSKECVWVSLTPSVNGRIP--ILDLTTDVKELNSLQKHFFLGKA 1024
Query: 1222 IKLDRKRNNVVLSHRAVIEESMGEERQKLIETLKEGCTVKGVVKNITDYGAFIDLGG-ID 1280
IK VV + ++ ++G + E L G + G V N+ + GA + L G +
Sbjct: 1025 IKC-----YVVNAEDSITLSAIGPLQG--FENLTPGSRLVGKVTNVNEAGAILQLPGHMS 1077
Query: 1281 GLLHITDIAWRRVKHPSEILTIGQDISTKILKYDQEKNRVSLGMKQ-------LGI-DPW 1332
G + D+ P T + +L D +V+L + + I D
Sbjct: 1078 GRVSRIDMFDDYDILPETKFTRNNLVGVCVLSVDVPNRKVALSARNSRTQSQPVEIKDKE 1137
Query: 1333 IGLSFRYPRGTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEM-DWINKNVTPSKIVQLND 1391
I G G V N+ + G FV I + V I E+ D K+ P +N
Sbjct: 1138 INSVDDLKIGDICRGFVCNVANQGLFVTIGHNLIARVKIGELFDTFIKDWKPH--FHVNQ 1195
Query: 1392 TVEIMILEINEERRRISLGMKQCKDNPWENFXXXXXXXXXXXXXXXXXT---DFGIFIGL 1448
V+ I+ I+ + +RI + +KQ K D+G+ I +
Sbjct: 1196 LVKGSIVGIDNDSKRIEMSLKQSKIKDSSEITKTFADIAVGSNLDGTVVKVGDYGVLIRI 1255
Query: 1449 DG--NIDGLIHLSDLSWTDPGEEIIRNFKK----GDEIEAIILSIDVEKERISLGIKQLE 1502
DG NI GL H S+++ + ++ N K GD++ A +L +D EK RI+LG+K
Sbjct: 1256 DGTDNIVGLCHKSEIA-----DAVVLNISKLYSSGDKVRAHVLDVDSEKRRIALGLKSSY 1310
Query: 1503 GDPFNNY-VNINDKGSLVNGIIKSIDTNKGAI-----IQLSNEVEGYLRISEEDNKHE 1554
D ++ ++ N++ + +S DT++ + +Q S EVE +ED + E
Sbjct: 1311 FDSDSDISMSDNEEDVEMRSEDQS-DTSESEVGSKDDVQ-SEEVENLESAGDEDEEEE 1366
Score = 164 (62.8 bits), Expect = 9.0e-06, Sum P(2) = 9.0e-06
Identities = 77/374 (20%), Positives = 163/374 (43%)
Query: 1148 ILSRDKAKRLASWLSLEKAMESGEIITGTINGKVKGGLTV-LTNGLKAFLPGS-LVDIRP 1205
ILS ++ +L +E +E G+ + GTI + G+ V ++ G+ +P + + DI
Sbjct: 469 ILSFQQSVLNQQFLRIED-IEVGQFVDGTIAKLIPQGIVVTISEGINGLVPSTHMADIAL 527
Query: 1206 VKDTTPFE-GKTMDFKVIKLDRKRNNVVLSHRAVIEESMGEERQKLI---ETLKEGCTVK 1261
F+ G ++ +V+ + R V+L+ +++S+ LI E G
Sbjct: 528 QFPERRFKVGSSVKCRVLSTNVLRKRVLLT----LKKSLLNTDLPLIYDYEQATPGTQTV 583
Query: 1262 GVVKNITDYGAFIDL-GGIDGLLHITDIAWRRVKHPSEILTIGQDISTKILKYDQEKNRV 1320
G + I + GA ++ + L +++++ ++ E +GQ +S I+ D E ++
Sbjct: 584 GTLARIFEDGAIVEFYNSVRAFLPVSEMSEAYIRDAREHFKVGQTLSVTIVSCDPENRKM 643
Query: 1321 SLGMKQLGIDPWIGLSFRYPR-GTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEM-DW-I 1377
+G ++ D F + G+ L G V T+ V++ + G++ + ++ D +
Sbjct: 644 RVGCREQSWDAKRLERFENIKAGSVLSGIVLQKTEDSVIVDLGDKVTGVITLGQLCDGDL 703
Query: 1378 NK-NVTPSKIVQLNDTVEIMILEINEERRRISLGMKQ-----CKDNPWENFXXXXXXXXX 1431
NK + +K+ E+++L + ++ ISL +K+ K+N
Sbjct: 704 NKCSKVMNKLRASTKLAEVLVLRKDTSKKLISLSLKKSLVEAAKENRMPINITDLKEGIK 763
Query: 1432 XXXXXXXXTDFGIFIGLDGNIDGLIHLSDLSWTDPGEEII----RNFKKGDEIEAIILSI 1487
T FG+F+ DGL+ L ++ EE + +K + + LS+
Sbjct: 764 YFGFVRNATTFGVFVEF---CDGLVALVPKAYIS--EEYVPVPSAVYKPQQSVTCVCLSV 818
Query: 1488 DVEKERISLGIKQL 1501
++ +E+ + K L
Sbjct: 819 ELSQEKAFMSFKPL 832
Score = 154 (59.3 bits), Expect = 6.5e-05, Sum P(3) = 6.5e-05
Identities = 95/411 (23%), Positives = 176/411 (42%)
Query: 1039 NLSPLKCPE--QAHLLNTSKMNINQVVNQILDCFATLFKESLLR-HDMRSGEVISAEVIG 1095
N P K +A ++N S ++ N IL ++ + LR D+ G+ + +
Sbjct: 444 NSGPYKVDSTHEARIINYSYVD-NLY---ILSFQQSVLNQQFLRIEDIEVGQFVDGTIAK 499
Query: 1096 LDRNFVIINADLKSEAFIP---IEEFKNDNGELEVKIGDFVSVAIESLENGFGDTILSRD 1152
L +++ +P + + E K+G V + S N +L
Sbjct: 500 LIPQGIVVTISEGINGLVPSTHMADIALQFPERRFKVGSSVKCRVLST-NVLRKRVLLTL 558
Query: 1153 KAKRLASWLSL----EKAMESGEIITGTINGKVKGGLTV-LTNGLKAFLPGSLVDIRPVK 1207
K L + L L E+A + + GT+ + G V N ++AFLP S + ++
Sbjct: 559 KKSLLNTDLPLIYDYEQATPGTQTV-GTLARIFEDGAIVEFYNSVRAFLPVSEMSEAYIR 617
Query: 1208 DTTP-FE-GKTMDFKVIKLDRKRNNVVLSHRAVIEESMGEERQKLIETLKEGCTVKGVVK 1265
D F+ G+T+ ++ D + + + R E+S +R + E +K G + G+V
Sbjct: 618 DAREHFKVGQTLSVTIVSCDPENRKMRVGCR---EQSWDAKRLERFENIKAGSVLSGIVL 674
Query: 1266 NITDYGAFIDLGG-IDGLLHITDIAWRRVKHPSEILTIGQDISTK-----ILKYDQEKNR 1319
T+ +DLG + G++ + + + S+++ + STK +L+ D K
Sbjct: 675 QKTEDSVIVDLGDKVTGVITLGQLCDGDLNKCSKVMNKLR-ASTKLAEVLVLRKDTSKKL 733
Query: 1320 VSLGMKQLGIDPWIGLSFRYP-------RGTRLLGKVTNLTDYGAFVEIEKGIEGLV--- 1369
+SL +K+ ++ R P G + G V N T +G FVE G+ LV
Sbjct: 734 ISLSLKKSLVEA--AKENRMPINITDLKEGIKYFGFVRNATTFGVFVEFCDGLVALVPKA 791
Query: 1370 HISEMDWINKNVTPSKIVQLNDTVEIMIL--EINEERRRIS---LGMKQCK 1415
+ISE +++ PS + + +V + L E+++E+ +S L KQ K
Sbjct: 792 YISE-EYVP---VPSAVYKPQQSVTCVCLSVELSQEKAFMSFKPLAQKQEK 838
Score = 52 (23.4 bits), Expect = 6.5e-05, Sum P(3) = 6.5e-05
Identities = 26/110 (23%), Positives = 51/110 (46%)
Query: 1446 IGLDGNIDGLIHLSDL-----SWTDPGEEIIRNFKKGDEIEAIILSIDVEKERISLGIKQ 1500
+ L N+ G + +S++ DP + + R F KGD+I +L I + L I
Sbjct: 883 VDLAANVHGRVDVSEVFDNFGEIVDPNKPLKR-FHKGDKIRVRVLGIHDSRNHKFLPISH 941
Query: 1501 LEGDPFNNYVNINDKGSLVNGIIKSIDTNKGAIIQLSNEVEGYLR-ISEE 1549
P ++ ++ + S++N S+ K + +EV G++ +S+E
Sbjct: 942 -RVSP-KQFLELSVRPSILNMEPFSM---KEPQFKKGDEVTGFVNNVSKE 986
Score = 40 (19.1 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 405 EAKNKIIESTWNLPDVSKIIGFNKKNYNTISKINNISKLQNNDMYKL 451
EAK +ES ++SK KK SK ++ S+L N + K+
Sbjct: 54 EAKKDFMESASGTAELSKKTRPKKKG----SKKSSKSELDNEENLKV 96
Score = 40 (19.1 bits), Expect = 6.5e-05, Sum P(3) = 6.5e-05
Identities = 16/59 (27%), Positives = 25/59 (42%)
Query: 907 QLDNELELVILIKKLNY-NFLGKEVYLNGV-NVTTLIRNEKVSNNASKIAKFKNIRKEL 963
+LDNE L + I+ L Y N + L + + TL + N + NI +L
Sbjct: 87 ELDNEENLKVHIQSLRYKNITPGSLILGQIAQINTLDLAVSLPNCLTGYVPITNISDKL 145
Score = 37 (18.1 bits), Expect = 6.4e-07, Sum P(2) = 6.4e-07
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 235 TGKGRVIIRAKTHIEEFNRENRTAIIIDEL 264
T K + + K + E +ENR I I +L
Sbjct: 729 TSKKLISLSLKKSLVEAAKENRMPINITDL 758
>UNIPROTKB|F1PLK8 [details] [associations]
symbol:PDCD11 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR003029 InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126 PROSITE:PS50293
SMART:SM00386 GO:GO:0005634 GO:GO:0006397 GO:GO:0003723
Gene3D:1.25.40.10 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 CTD:22984
KO:K14792 OMA:LHLADIY GeneTree:ENSGT00390000012228
EMBL:AAEX03015497 EMBL:AAEX03015498 RefSeq:XP_535003.3
Ensembl:ENSCAFT00000016578 GeneID:477810 KEGG:cfa:477810
Uniprot:F1PLK8
Length = 1870
Score = 181 (68.8 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 102/466 (21%), Positives = 190/466 (40%)
Query: 1076 ESLLRHDMRSGEVISAEVIGLDRNFVIINADLK-SEAFIPIEE----FKNDNGELEVKIG 1130
E L ++ G +++ V L+ + +++ + + AF+P+++ + N ++K+G
Sbjct: 174 EVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVSGARAFLPLQKAQEYIRQKNKGAKLKVG 233
Query: 1131 DFVSVAIESLENGFGDTILSRDKAKRLASWLSLEKAMESGEIITG-TINGKVKGGLTV-L 1188
+++ IE ++ G LS ++ A+ + E+ ++ G + +V+ V L
Sbjct: 234 QYLNCIIEEVKGNGGVVGLSIGPSEVSAAIATEEQNWTLNNLLPGLVVKAQVQKVTPVGL 293
Query: 1189 TNGLKAFLPGSLVD---IRPVKDTTPFEGKTMDFKVIKLDRKRNNVVLSHRAVIEESMGE 1245
T F G LVD + P K T F + + V+ + + V LS R + + G
Sbjct: 294 TLNFLTFFSG-LVDFMHLDPKKAGTYFSNQAVRACVLCVHPRTRAVRLSLRPIFLQP-GR 351
Query: 1246 ERQKLIETLKEGCTVKGVVKNITDYGAFIDLGGIDGLLHITDIAWRRVKHPSEILTI--- 1302
+L C G V + +F G L +A+ R+ H S+ I
Sbjct: 352 SLTRL------SCQHLGAVLDDVPVQSFFSKAGATFRLKDGALAYARLSHLSDSKNIFNA 405
Query: 1303 -----GQDISTKILKYDQEKNRVSLGMKQLGIDPWIGLSFRY---PRGTRLLGKVTNLTD 1354
G +I+ Y Q V L ++ I+ FRY G + G V +
Sbjct: 406 EAYKPGNIHKCRIIDYSQMDEMVLLSLRPSIIESQY---FRYHDIKPGALVKGTVLTIEP 462
Query: 1355 YGAFVEIEKGIEGLVHISEM-DWINKNVTPSKIVQLNDTVEIMILEINEERRRISLGMKQ 1413
YG V++ + I GL+ + D + KN P K + D V+ +L + E +++ + +K+
Sbjct: 463 YGMLVKVGEQIRGLIPPMHLADILIKN--PEKKYHIGDEVKCRVLLCDPEAKKLMMTLKK 520
Query: 1414 C---KDNPWENFXXXXXXXXXXXXXXXXXTDFGIFIGLDGNIDGLIHLSDLSWTD-PGEE 1469
P D+G + ++ GL+ +LS P E
Sbjct: 521 TLIESKLPAITCYADAKPGLQTHGFILRVKDYGCIVKFYNDVQGLVPKHELSAEYVPDPE 580
Query: 1470 IIRNFKKGDEIEAIILSIDVEKERISLGIKQLEGDPFNNYVNINDK 1515
R F G ++ ++L+ + KER+ L K L GDP + + K
Sbjct: 581 --RVFYTGQVVKVVVLNCEPSKERMLLSFKLL-GDPKKEHTGHSQK 623
Score = 38 (18.4 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 1552 KH-EKKLKIGENIDVLTVLIDHKTRYIQLS 1580
KH +KK +IG+ + V D ++ LS
Sbjct: 1187 KHPDKKFRIGQALKATVVGPDSSKAFLCLS 1216
Score = 38 (18.4 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 1525 SIDTNKGAIIQLSNEVEGYLRISEEDNKHEKKLKIGENIDVL 1566
S+ ++G + L Y R +E +KK + N+D+L
Sbjct: 856 SVVFSEGPVSGLVLRASKYHRAGQEVEPGQKKKVVILNVDML 897
>TIGR_CMR|BA_3944 [details] [associations]
symbol:BA_3944 "polyribonucleotide nucleotidyltransferase"
species:198094 "Bacillus anthracis str. Ames" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0004654 "polyribonucleotide
nucleotidyltransferase activity" evidence=ISS] [GO:0006402 "mRNA
catabolic process" evidence=ISS] HAMAP:MF_01595 InterPro:IPR003029
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012162
InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575 Pfam:PF03726
PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 Pfam:PF03725
SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962 GO:GO:0004654
Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS HOGENOM:HOG000218326
ProtClustDB:PRK11824 RefSeq:NP_846188.1 RefSeq:YP_020583.1
RefSeq:YP_029909.1 ProteinModelPortal:Q81WM8 IntAct:Q81WM8
DNASU:1086877 EnsemblBacteria:EBBACT00000009810
EnsemblBacteria:EBBACT00000017999 EnsemblBacteria:EBBACT00000024497
GeneID:1086877 GeneID:2814451 GeneID:2852317 KEGG:ban:BA_3944
KEGG:bar:GBAA_3944 KEGG:bat:BAS3658
BioCyc:BANT260799:GJAJ-3716-MONOMER
BioCyc:BANT261594:GJ7F-3832-MONOMER Uniprot:Q81WM8
Length = 712
Score = 155 (59.6 bits), Expect = 5.7e-07, P = 5.7e-07
Identities = 56/197 (28%), Positives = 104/197 (52%)
Query: 1145 GDTILSRD-KAKRLASWLSLEKAMESGEIITGTINGKVKGGLTVLTNGLKAFLPGSL-VD 1202
G T L D K L+ + LE+A++ ++ I + + L A+ P + +
Sbjct: 502 GVTALQMDIKIDGLSREI-LEEALQQAKVGRVHILNHMLSVIAEPRTELSAYAPKIITMT 560
Query: 1203 IRP--VKDTTPFEGKTMDFKVI-----KLDRKRNNVVLSHRAVIEESMGEERQKLIETL- 1254
I P ++D GK ++ K+I K+D +++ V + I + M ++ +K+IE +
Sbjct: 561 INPDKIRDVIGPSGKQIN-KIIEETGVKIDIEQDGTVFI--SSINQEMNDKAKKIIEDIV 617
Query: 1255 KE---GCTVKGVVKNITDYGAFIDL-GGIDGLLHITDIAWRRVKHPSEILTIGQDISTKI 1310
+E G +G VK + +GAF++L G DGL+HI+++A RV +++ IG I+ K+
Sbjct: 618 REVQVGEIYEGKVKRVEKFGAFVELFSGKDGLVHISELALERVGKVEDVVKIGDVITVKV 677
Query: 1311 LKYDQEKNRVSLGMKQL 1327
++ D++ RV+L K L
Sbjct: 678 IEIDKQ-GRVNLSRKVL 693
>UNIPROTKB|F1S843 [details] [associations]
symbol:LOC100157027 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 PROSITE:PS50293 SMART:SM00386 GO:GO:0005634
GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
OMA:LHLADIY GeneTree:ENSGT00390000012228 Ensembl:ENSSSCT00000011593
ArrayExpress:F1S843 Uniprot:F1S843
Length = 1876
Score = 143 (55.4 bits), Expect = 1.2e-06, Sum P(4) = 1.2e-06
Identities = 75/320 (23%), Positives = 136/320 (42%)
Query: 1021 MSDLLI-NLIKR-DIRDKTRNLSPLKC-PEQAHLLNTSKMNINQVVNQILDCFATLFKES 1077
++D+L+ N K+ + D+ + L C PE L+ T K + + + C+A K
Sbjct: 485 LADILMKNPEKKYHVGDEVK-CRVLLCDPEAKRLMMTLKKTLVESKLPAITCYADA-KPG 542
Query: 1078 LLRHD--MRSGEVISAEVIGLDRNFVIINADLKSEAFIPIEEFKNDNGELEVKIGDFVSV 1135
L H +R + D ++ +L +E ++P E +G + ++ V +
Sbjct: 543 LQTHGFILRVKDYGCIVKFYNDVQGLVPKHELSAE-YVPDPE----SGVVSCQVVKVVVL 597
Query: 1136 AIE-SLENGFGDTILSRDKAKRLASWLSLEK-AMESGEIITGTINGKVKGGL--TVLTNG 1191
E S E LS D K +K A+ +G+++ + K K GL VL +
Sbjct: 598 NCEPSKEKMLLSFRLSSDPKKESEGHSQKKKRALTAGQLVDVKVLDKTKDGLEVAVLPHN 657
Query: 1192 LKAFLPGSLVDIRPVKDTTPFE----GKTMDFKVIKLDRKRNNVVLSHR-AVIEESMGEE 1246
++AFLP + + G + +V+ L V+L + A++ G +
Sbjct: 658 IRAFLPTPHLSDHVANSPLLYHWLQAGDVLH-RVLCLSETEGRVLLCRKPALVSAVEGGQ 716
Query: 1247 RQKLIETLKEGCTVKGVVKNITDYGAFIDL-GGIDGLLHITDIAWRRVKHPSEILTIGQD 1305
K + G + G V++I DYG FI G+ GL ++ + V S+ GQ
Sbjct: 717 DPKSFSEIHPGMLLIGFVRSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQT 776
Query: 1306 ISTKILKYDQEKNRVSLGMK 1325
+ K+ D+EK R+ L ++
Sbjct: 777 VVAKVTNVDEEKQRMLLSLR 796
Score = 80 (33.2 bits), Expect = 1.2e-06, Sum P(4) = 1.2e-06
Identities = 35/147 (23%), Positives = 68/147 (46%)
Query: 1447 GLDGNIDGLIHLSDLSWTDPGEEIIRNFKKGDEIEAI-----ILSIDVEKERISLGIKQL 1501
G G ++ + H+SD S+++ E N KK + + +L++ + R + K
Sbjct: 1252 GKIGKVN-IFHVSD-SFSETPLETF-NLKKIERCYVLSNAGPVLTLSLRSSRTNPDTKSK 1308
Query: 1502 EGDPFNNYVNINDKGSLVNGIIKSIDTNKGAIIQLSNEVEG---YLRISEED---NK-HE 1554
DP N ++G L+ G +KSI + G ++ L V G Y +S+ N ++
Sbjct: 1309 IVDPEINSTQDIEEGQLLRGYVKSIQPS-GVLLGLGPSVTGLARYSHVSQHSPTRNALYD 1367
Query: 1555 KKLKIGENIDVLTVLIDHKTRYIQLSF 1581
K L G+ + + ++ + ++LSF
Sbjct: 1368 KYLPEGKLLTAKVLSLNRRENLVELSF 1394
Score = 50 (22.7 bits), Expect = 1.2e-06, Sum P(4) = 1.2e-06
Identities = 13/58 (22%), Positives = 27/58 (46%)
Query: 1342 GTRLLGKVTNLTDYGAFVEIEKGIEGLVHISE-MDWINKNVTPSKIVQLNDTVEIMIL 1398
G + G V ++ V +E GI G +H S +D + +P+ +++ V ++
Sbjct: 1034 GDMVTGTVKSIKPTHVVVTLEDGIVGCIHASHILDDVPVGTSPTTKLKVGKKVTARVI 1091
Score = 40 (19.1 bits), Expect = 1.2e-06, Sum P(4) = 1.2e-06
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 2 NQFAKEVISILLEEEMCK 19
++F +E IL EE +C+
Sbjct: 65 SKFVREKFEILNEESLCE 82
>UNIPROTKB|F1S842 [details] [associations]
symbol:LOC100157027 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 PROSITE:PS50293 SMART:SM00386 GO:GO:0005634
GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
GeneTree:ENSGT00390000012228 Ensembl:ENSSSCT00000011594
ArrayExpress:F1S842 Uniprot:F1S842
Length = 1859
Score = 141 (54.7 bits), Expect = 1.8e-06, Sum P(4) = 1.8e-06
Identities = 75/321 (23%), Positives = 137/321 (42%)
Query: 1021 MSDLLI-NLIKR-DIRDKTRNLSPLKC-PEQAHLLNTSKMNINQVVNQILDCFATLFKES 1077
++D+L+ N K+ + D+ + L C PE L+ T K + + + C+A K
Sbjct: 485 LADILMKNPEKKYHVGDEVK-CRVLLCDPEAKRLMMTLKKTLVESKLPAITCYADA-KPG 542
Query: 1078 LLRHD--MRSGEVISAEVIGLDRNFVIINADLKSEAFIPIEEFKNDNGELEVKIGDFVSV 1135
L H +R + D ++ +L +E ++P E +G + ++ V +
Sbjct: 543 LQTHGFILRVKDYGCIVKFYNDVQGLVPKHELSAE-YVPDPE----SGVVSCQVVKVVVL 597
Query: 1136 AIE-SLENGFGDTILSRDKAKRLASWLSLEK-AMESGEIITGTINGKVKGGL--TVLTNG 1191
E S E LS D K +K A+ +G+++ + K K GL VL +
Sbjct: 598 NCEPSKEKMLLSFRLSSDPKKESEGHSQKKKRALTAGQLVDVKVLDKTKDGLEVAVLPHN 657
Query: 1192 LKAFLPGSLVDIRPVKDTTPFE----GKTMDFKVIKLDR--KRNNVVLSHRAVIEESMGE 1245
++AFLP + + G + +V+ L +RN ++ A++ G
Sbjct: 658 IRAFLPTPHLSDHVANSPLLYHWLQAGDVLH-RVLCLSETEERNELLCRKPALVSAVEGG 716
Query: 1246 ERQKLIETLKEGCTVKGVVKNITDYGAFIDL-GGIDGLLHITDIAWRRVKHPSEILTIGQ 1304
+ K + G + G V++I DYG FI G+ GL ++ + V S+ GQ
Sbjct: 717 QDPKSFSEIHPGMLLIGFVRSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQ 776
Query: 1305 DISTKILKYDQEKNRVSLGMK 1325
+ K+ D+EK R+ L ++
Sbjct: 777 TVVAKVTNVDEEKQRMLLSLR 797
Score = 80 (33.2 bits), Expect = 1.8e-06, Sum P(4) = 1.8e-06
Identities = 35/147 (23%), Positives = 68/147 (46%)
Query: 1447 GLDGNIDGLIHLSDLSWTDPGEEIIRNFKKGDEIEAI-----ILSIDVEKERISLGIKQL 1501
G G ++ + H+SD S+++ E N KK + + +L++ + R + K
Sbjct: 1253 GKIGKVN-IFHVSD-SFSETPLETF-NLKKIERCYVLSNAGPVLTLSLRSSRTNPDTKSK 1309
Query: 1502 EGDPFNNYVNINDKGSLVNGIIKSIDTNKGAIIQLSNEVEG---YLRISEED---NK-HE 1554
DP N ++G L+ G +KSI + G ++ L V G Y +S+ N ++
Sbjct: 1310 IVDPEINSTQDIEEGQLLRGYVKSIQPS-GVLLGLGPSVTGLARYSHVSQHSPTRNALYD 1368
Query: 1555 KKLKIGENIDVLTVLIDHKTRYIQLSF 1581
K L G+ + + ++ + ++LSF
Sbjct: 1369 KYLPEGKLLTAKVLSLNRRENLVELSF 1395
Score = 50 (22.7 bits), Expect = 1.8e-06, Sum P(4) = 1.8e-06
Identities = 13/58 (22%), Positives = 27/58 (46%)
Query: 1342 GTRLLGKVTNLTDYGAFVEIEKGIEGLVHISE-MDWINKNVTPSKIVQLNDTVEIMIL 1398
G + G V ++ V +E GI G +H S +D + +P+ +++ V ++
Sbjct: 1035 GDMVTGTVKSIKPTHVVVTLEDGIVGCIHASHILDDVPVGTSPTTKLKVGKKVTARVI 1092
Score = 40 (19.1 bits), Expect = 1.8e-06, Sum P(4) = 1.8e-06
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 2 NQFAKEVISILLEEEMCK 19
++F +E IL EE +C+
Sbjct: 65 SKFVREKFEILNEESLCE 82
>ZFIN|ZDB-GENE-030131-4076 [details] [associations]
symbol:pdcd11 "programmed cell death 11"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF00575 PROSITE:PS50126 PROSITE:PS50293
SMART:SM00386 ZFIN:ZDB-GENE-030131-4076 GO:GO:0003723 GO:GO:0005622
GO:GO:0006396 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
HOGENOM:HOG000088607 HOVERGEN:HBG108419 OMA:LHLADIY
OrthoDB:EOG4XKV63 GeneTree:ENSGT00390000012228 EMBL:CR812943
IPI:IPI00817258 UniGene:Dr.76104 Ensembl:ENSDART00000074342
Ensembl:ENSDART00000124833 Uniprot:B8JIP9
Length = 1816
Score = 142 (55.0 bits), Expect = 0.00099, Sum P(2) = 0.00099
Identities = 57/265 (21%), Positives = 125/265 (47%)
Query: 1161 LSLEKAMESGEIITG---TINGKVKGGLTVLTNGLKAFLPGSLV-DIRPVKDTTPFEGKT 1216
L L + GE++ G T G L + +G +AF+ +L+ + + DT +T
Sbjct: 348 LDLHFSERVGEVVQGCQMTSLHHYSGALMKMLDGSRAFVHRNLLKEPKEELDTNHLMSQT 407
Query: 1217 MDF-KVIKLDRKRNNVVLSHRAVIEESMGEERQKLIETLKEGCTVKGVVKNITDYGAFID 1275
++I + + ++A + S E + +K G V+G V ++ +G ++
Sbjct: 408 QHILRIINY----SPIEQIYQATLRWSSIETPFFSCQDIKVGQIVEGTVTDLQKHGVYVR 463
Query: 1276 LGG-IDGLL---HITDIAWRRVKHPSEILTIGQDISTKILKYDQEKNRVSLGMKQLGIDP 1331
+G I G++ H+ D+ +K+P + G + ++L + +K + L K+ ++
Sbjct: 464 IGEHIRGMIPRIHLADVT---LKNPEKKFYPGLKVKCRVLLVEAQKKLLILTRKKALVES 520
Query: 1332 WIGL--SFRYPRGTRLL-GKVTNLTDYGAFVEIEKGIEGLVHISEMDWINKNVT-PSKIV 1387
+ + S+ R R+ G V + ++G V + ++GLV + E+ + VT P ++
Sbjct: 521 TLPIFQSYSDARPGRISHGFVVCIKEFGCIVRFYEDVKGLVPMQELT--TETVTNPEELF 578
Query: 1388 QLNDTVEIMILEINEERRRISLGMK 1412
+ V++ +L+ +EE++ + L K
Sbjct: 579 FVGQVVKVKVLKCDEEKKMLRLSFK 603
Score = 134 (52.2 bits), Expect = 1.9e-06, Sum P(3) = 1.9e-06
Identities = 47/171 (27%), Positives = 83/171 (48%)
Query: 1170 GEIITGTINGKVKGGL--TVLTNGLKAFLPGSLVDIRPVKDTTPF-----EGKTMDFKVI 1222
G+++ + KV GL +++ ++AFLP + + V + P EG T+ +
Sbjct: 623 GKMVDARVCRKVLNGLEVSIIPEEVQAFLPTTHLSDH-VTNCLPLWMALEEGDTICNLMC 681
Query: 1223 KLDRKRNNVVLSHRAVIEESMGEER-QKLIETLKEGCTVKGVVKNITDYGAFIDLG-GID 1280
+ K+ +VL+ + ++ + + K L+ G + G VKNI YG FI G+
Sbjct: 682 LTNYKKKGIVLTKKPHLKAYIEDGAIPKNFSELQVGMQMVGWVKNIMPYGVFISFPYGVF 741
Query: 1281 GLLHITDIAWRRVKHPSEILTIGQDISTKILKYDQEKNR--VSLGMKQLGI 1329
GL I ++ + +K S I I Q + K+ D+EK R VSL + +L +
Sbjct: 742 GLAPIANMGDQFIKETSGIFDIDQTVVAKVTNLDEEKQRFLVSLKLSELSL 792
Score = 86 (35.3 bits), Expect = 1.9e-06, Sum P(3) = 1.9e-06
Identities = 54/279 (19%), Positives = 106/279 (37%)
Query: 1294 KHPSEILTIGQDISTKILKYDQEKNRVSLGMKQLGIDPWIGLSFRYPRGTRLLGKVTNLT 1353
KHP + GQ +S K++ D +K + + G + + G L V +
Sbjct: 1144 KHPQRLFKPGQALSAKVVSVDPKKP-IQFSLSLTG-------THKLEPGMNTLAMVQKIQ 1195
Query: 1354 DY-GAFVEIEKGIEGLVHISEMD--WINKNVTPSKIVQLN--DTVEIMILEINEERR--R 1406
+ G + + GL H++++ + K + K Q+ +E I E N R R
Sbjct: 1196 PHKGLMLALPYENTGLAHLTDLSDSYTEKPLESYKEGQIIRCHVIEQKIKEFNVSLRPSR 1255
Query: 1407 ISLGMKQCKDNPWENFXXXXXXXXXXXXXXXXXTDFGIFIGLDGNIDGLIHLSDLS---W 1463
++ ++P D GIF+ L I G + + +
Sbjct: 1256 LNKDKHDIVEDPEIQSIADIKEGQSIRGYVSSVNDQGIFLRLSRTITGRVLFQNATKYYM 1315
Query: 1464 TDPGEEIIRNFKKGDEIEAIILSIDVEKERISLGIKQLE-GDPFNNYVNINDKGSLVNGI 1522
DP + +I++ + + A +LS+D E ++L + + G P + + + G
Sbjct: 1316 NDP-KVLIKHVGQNALVAAKVLSVDSENLHVNLSLLSKDTGKP-DLLPESLELPLRLTGE 1373
Query: 1523 IKSIDTNKGAIIQLSNEVEGYLRISEEDNKHEKKLKIGE 1561
K K A+ + E + +E + K++K+ E
Sbjct: 1374 EKEKHDKKAAVKRKRTLSESQQQDNENTEQKTKRIKVDE 1412
Score = 43 (20.2 bits), Expect = 1.9e-06, Sum P(3) = 1.9e-06
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 699 GSYDIMLFSD---SGKAVRFNENS---VRAMGRSARG 729
G Y ++L D SG+ VR ++N V+A ++ +G
Sbjct: 227 GQYVLVLIEDVKDSGRVVRLSQNPQALVKACAQTKQG 263
>UNIPROTKB|P50849 [details] [associations]
symbol:pnp "Polyribonucleotide nucleotidyltransferase"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0005515 "protein binding" evidence=IPI] HAMAP:MF_01595
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 GO:GO:0003723 GO:GO:0006396 EMBL:AL009126
GenomeReviews:AL009126_GR GO:GO:0006402 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0000175 GO:GO:0030420 InterPro:IPR022967
SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962
GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS HOGENOM:HOG000218326
ProtClustDB:PRK11824 EMBL:U29668 EMBL:Z80835 PIR:S70691
RefSeq:NP_389551.1 ProteinModelPortal:P50849 SMR:P50849
IntAct:P50849 EnsemblBacteria:EBBACT00000003076 GeneID:939646
KEGG:bsu:BSU16690 PATRIC:18975145 GenoList:BSU16690
BioCyc:BSUB:BSU16690-MONOMER Uniprot:P50849
Length = 705
Score = 150 (57.9 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 60/215 (27%), Positives = 108/215 (50%)
Query: 1125 LEVKIGDFVSVAIESLENGFGDTILSRD-KAKRLASWLSLEKAMESGEIITGTINGKVKG 1183
+E +GD + + E G T L D K + L+ + LE+A++ + I +
Sbjct: 485 MEDALGD-MDFKVAGTEKGV--TALQMDIKIEGLSREI-LEEALQQAKKGRMEILNSMLA 540
Query: 1184 GLTVLTNGLKAFLPGSL-VDIRP--VKDTTPFEGKTMDFKVI-----KLDRKRNNVVLSH 1235
L+ L + P L + I P ++D GK ++ K+I K+D +++ +
Sbjct: 541 TLSESRKELSRYAPKILTMTINPDKIRDVIGPSGKQIN-KIIEETGVKIDIEQDGTIFIS 599
Query: 1236 RAVIEESMGEERQKLIETL-KE---GCTVKGVVKNITDYGAFIDL-GGIDGLLHITDIAW 1290
+ES ++ +K+IE L +E G G VK I +GAF+++ G DGL+HI+++A
Sbjct: 600 ST--DESGNQKAKKIIEDLVREVEVGQLYLGKVKRIEKFGAFVEIFSGKDGLVHISELAL 657
Query: 1291 RRVKHPSEILTIGQDISTKILKYDQEKNRVSLGMK 1325
RV +++ IG +I K+ + D++ RV+L K
Sbjct: 658 ERVGKVEDVVKIGDEILVKVTEIDKQ-GRVNLSRK 691
>TIGR_CMR|SPO_3389 [details] [associations]
symbol:SPO_3389 "polyribonucleotide
nucleotidyltransferase" species:246200 "Ruegeria pomeroyi DSS-3"
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=ISS]
[GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
evidence=ISS] [GO:0006402 "mRNA catabolic process" evidence=ISS]
HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012162 InterPro:IPR015848
Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003723 GO:GO:0006396 GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 HSSP:P05055 Pfam:PF03725 SUPFAM:SSF55666
eggNOG:COG1185 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591 OMA:YTMRVVS
HOGENOM:HOG000218326 ProtClustDB:PRK11824 RefSeq:YP_168585.1
ProteinModelPortal:Q5LN23 GeneID:3195958 KEGG:sil:SPO3389
PATRIC:23380231 Uniprot:Q5LN23
Length = 714
Score = 149 (57.5 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 30/72 (41%), Positives = 47/72 (65%)
Query: 1255 KEGCTVKGVVKNITDYGAFIDL-GGIDGLLHITDIAWRRVKHPSEILTIGQDISTKILKY 1313
+EG G V I D+GAF++ G DGL+H++ I RR+ HPS++L GQ++ K+L +
Sbjct: 623 EEGQVYTGKVVKIVDFGAFVNFFGKRDGLVHVSQIENRRLNHPSDVLKEGQEVKVKLLGF 682
Query: 1314 DQEKNRVSLGMK 1325
D ++ +V L MK
Sbjct: 683 D-DRGKVRLSMK 693
>UNIPROTKB|Q721R8 [details] [associations]
symbol:LMOf2365_0917 "S1 RNA binding domain protein"
species:265669 "Listeria monocytogenes serotype 4b str. F2365"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR003029
InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126 SMART:SM00732
GO:GO:0006139 GO:GO:0003723 GO:GO:0016788 EMBL:AE017262
GenomeReviews:AE017262_GR Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
Gene3D:3.30.420.140 eggNOG:COG2183 Gene3D:1.10.150.310
Gene3D:1.10.3500.10 InterPro:IPR023323 InterPro:IPR023097
InterPro:IPR018974 Pfam:PF09371 HOGENOM:HOG000270498 OMA:YKQKRRT
Gene3D:1.10.10.650 InterPro:IPR023319 KO:K06959 RefSeq:YP_013519.1
ProteinModelPortal:Q721R8 STRING:Q721R8 GeneID:2798896
KEGG:lmf:LMOf2365_0917 PATRIC:20323050 ProtClustDB:CLSK2391096
Uniprot:Q721R8
Length = 725
Score = 157 (60.3 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 28/75 (37%), Positives = 54/75 (72%)
Query: 1251 IETLKEGCTVKGVVKNITDYGAFIDLG-GIDGLLHITDIAWRRVKHPSEILTIGQDISTK 1309
+E LK+G ++G V+N+ D+GAF+D+G DGL+HI+ ++ VK+P +++++G ++
Sbjct: 643 MEDLKQGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLSNSFVKNPMDVVSVGDVVTVW 702
Query: 1310 ILKYDQEKNRVSLGM 1324
+ + D +KNR++L M
Sbjct: 703 VDEVDTKKNRIALTM 717
Score = 41 (19.5 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 11/40 (27%), Positives = 24/40 (60%)
Query: 449 YKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVID 488
+ L DI +++ LK LQ L+ E+ + ++ + ++ +ID
Sbjct: 580 FGLKDIGSED-LKAALQALSIPEEAEKLSIGKETMRDIID 618
>UNIPROTKB|Q5LKS3 [details] [associations]
symbol:Q5LKS3 "S1 RNA binding domain protein"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR003029
InterPro:IPR003583 InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126
SMART:SM00278 SMART:SM00732 GO:GO:0003677 GO:GO:0006281
GO:GO:0003723 GO:GO:0016788 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 EMBL:CP000032 GenomeReviews:CP000032_GR
InterPro:IPR022967 SMART:SM00316 Gene3D:3.30.420.140
Gene3D:1.10.150.310 Gene3D:1.10.3500.10 InterPro:IPR023323
InterPro:IPR023097 InterPro:IPR018974 Pfam:PF09371 OMA:YKQKRRT
Gene3D:1.10.10.650 InterPro:IPR023319 HOGENOM:HOG000270497
KO:K06959 RefSeq:YP_165135.1 ProteinModelPortal:Q5LKS3 SMR:Q5LKS3
GeneID:3196926 KEGG:sil:SPOA0306 PATRIC:23381958
ProtClustDB:CLSK2308454 Uniprot:Q5LKS3
Length = 765
Score = 146 (56.5 bits), Expect = 5.9e-06, P = 5.9e-06
Identities = 29/79 (36%), Positives = 48/79 (60%)
Query: 1251 IETLKEGCTVKGVVKNITDYGAFIDLG-GIDGLLHITDIAWRRVKHPSEILTIGQDISTK 1309
I L+ G ++G V N+ +GAF+D+G DGL+H++ +A R VK P E++ GQ I
Sbjct: 639 ITDLRPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKTGQVIKVT 698
Query: 1310 ILKYDQEKNRVSLGMKQLG 1328
+ + D + R+ L M++ G
Sbjct: 699 VTEIDVPRKRIGLSMRKDG 717
>TIGR_CMR|SPO_A0306 [details] [associations]
symbol:SPO_A0306 "S1 RNA binding domain protein"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003029 InterPro:IPR003583 InterPro:IPR006641
Pfam:PF00575 PROSITE:PS50126 SMART:SM00278 SMART:SM00732
GO:GO:0003677 GO:GO:0006281 GO:GO:0003723 GO:GO:0016788
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:CP000032
GenomeReviews:CP000032_GR InterPro:IPR022967 SMART:SM00316
Gene3D:3.30.420.140 Gene3D:1.10.150.310 Gene3D:1.10.3500.10
InterPro:IPR023323 InterPro:IPR023097 InterPro:IPR018974
Pfam:PF09371 OMA:YKQKRRT Gene3D:1.10.10.650 InterPro:IPR023319
HOGENOM:HOG000270497 KO:K06959 RefSeq:YP_165135.1
ProteinModelPortal:Q5LKS3 SMR:Q5LKS3 GeneID:3196926
KEGG:sil:SPOA0306 PATRIC:23381958 ProtClustDB:CLSK2308454
Uniprot:Q5LKS3
Length = 765
Score = 146 (56.5 bits), Expect = 5.9e-06, P = 5.9e-06
Identities = 29/79 (36%), Positives = 48/79 (60%)
Query: 1251 IETLKEGCTVKGVVKNITDYGAFIDLG-GIDGLLHITDIAWRRVKHPSEILTIGQDISTK 1309
I L+ G ++G V N+ +GAF+D+G DGL+H++ +A R VK P E++ GQ I
Sbjct: 639 ITDLRPGMVLEGTVTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKTGQVIKVT 698
Query: 1310 ILKYDQEKNRVSLGMKQLG 1328
+ + D + R+ L M++ G
Sbjct: 699 VTEIDVPRKRIGLSMRKDG 717
>UNIPROTKB|Q81VF3 [details] [associations]
symbol:BA_0255 "S1 RNA binding domain protein" species:1392
"Bacillus anthracis" [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003029 InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126
SMART:SM00732 EMBL:AE016879 EMBL:AE017334 GenomeReviews:AE016879_GR
GenomeReviews:AE017334_GR GO:GO:0006139 GO:GO:0003723 GO:GO:0016788
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 Gene3D:3.30.420.140
Gene3D:1.10.150.310 Gene3D:1.10.3500.10 InterPro:IPR023323
InterPro:IPR023097 InterPro:IPR018974 Pfam:PF09371
HOGENOM:HOG000270498 OMA:YKQKRRT Gene3D:1.10.10.650
InterPro:IPR023319 KO:K06959 RefSeq:NP_842808.1 RefSeq:YP_016861.1
ProteinModelPortal:Q81VF3 DNASU:1087362
EnsemblBacteria:EBBACT00000008548 EnsemblBacteria:EBBACT00000016441
GeneID:1087362 GeneID:2819520 KEGG:ban:BA_0255 KEGG:bar:GBAA_0255
PATRIC:18778014 ProtClustDB:CLSK2391234
BioCyc:BANT261594:GJ7F-271-MONOMER Uniprot:Q81VF3
Length = 722
Score = 160 (61.4 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 29/75 (38%), Positives = 51/75 (68%)
Query: 1251 IETLKEGCTVKGVVKNITDYGAFIDLG-GIDGLLHITDIAWRRVKHPSEILTIGQDISTK 1309
+E LK G ++G +N+ D+GAF+D+G DGL+HI+ ++ + VKHP +++++GQ +
Sbjct: 644 LEDLKRGMELEGTARNVVDFGAFVDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVKVW 703
Query: 1310 ILKYDQEKNRVSLGM 1324
+ D +K RV+L M
Sbjct: 704 VDDIDTKKGRVALSM 718
Score = 37 (18.1 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 6/27 (22%), Positives = 16/27 (59%)
Query: 512 NKYGSHKKNIRRSEIILNAINPSTEDL 538
++ G H + + E++L ++ S +D+
Sbjct: 560 DRTGIHPEQYKNVELLLKSLGLSKDDV 586
>TIGR_CMR|BA_0255 [details] [associations]
symbol:BA_0255 "S1 RNA binding domain protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003029 InterPro:IPR006641 Pfam:PF00575
PROSITE:PS50126 SMART:SM00732 EMBL:AE016879 EMBL:AE017334
GenomeReviews:AE016879_GR GenomeReviews:AE017334_GR GO:GO:0006139
GO:GO:0003723 GO:GO:0016788 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 HSSP:P05055
Gene3D:3.30.420.140 Gene3D:1.10.150.310 Gene3D:1.10.3500.10
InterPro:IPR023323 InterPro:IPR023097 InterPro:IPR018974
Pfam:PF09371 HOGENOM:HOG000270498 OMA:YKQKRRT Gene3D:1.10.10.650
InterPro:IPR023319 KO:K06959 RefSeq:NP_842808.1 RefSeq:YP_016861.1
ProteinModelPortal:Q81VF3 DNASU:1087362
EnsemblBacteria:EBBACT00000008548 EnsemblBacteria:EBBACT00000016441
GeneID:1087362 GeneID:2819520 KEGG:ban:BA_0255 KEGG:bar:GBAA_0255
PATRIC:18778014 ProtClustDB:CLSK2391234
BioCyc:BANT261594:GJ7F-271-MONOMER Uniprot:Q81VF3
Length = 722
Score = 160 (61.4 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 29/75 (38%), Positives = 51/75 (68%)
Query: 1251 IETLKEGCTVKGVVKNITDYGAFIDLG-GIDGLLHITDIAWRRVKHPSEILTIGQDISTK 1309
+E LK G ++G +N+ D+GAF+D+G DGL+HI+ ++ + VKHP +++++GQ +
Sbjct: 644 LEDLKRGMELEGTARNVVDFGAFVDVGVKQDGLVHISKLSKQYVKHPLDVVSVGQIVKVW 703
Query: 1310 ILKYDQEKNRVSLGM 1324
+ D +K RV+L M
Sbjct: 704 VDDIDTKKGRVALSM 718
Score = 37 (18.1 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 6/27 (22%), Positives = 16/27 (59%)
Query: 512 NKYGSHKKNIRRSEIILNAINPSTEDL 538
++ G H + + E++L ++ S +D+
Sbjct: 560 DRTGIHPEQYKNVELLLKSLGLSKDDV 586
>UNIPROTKB|Q60A39 [details] [associations]
symbol:MCA1032 "S1 RNA binding domain protein"
species:243233 "Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR003029
InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126 SMART:SM00732
GO:GO:0006139 GO:GO:0003723 GO:GO:0016788 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AE017282
GenomeReviews:AE017282_GR InterPro:IPR022967 SMART:SM00316
Gene3D:3.30.420.140 Gene3D:1.10.150.310 Gene3D:1.10.3500.10
InterPro:IPR023323 InterPro:IPR023097 InterPro:IPR018974
Pfam:PF09371 OMA:YKQKRRT Gene3D:1.10.10.650 InterPro:IPR023319
HOGENOM:HOG000270497 KO:K06959 RefSeq:YP_113508.1
ProteinModelPortal:Q60A39 SMR:Q60A39 GeneID:3102226
KEGG:mca:MCA1032 PATRIC:22605872 Uniprot:Q60A39
Length = 735
Score = 152 (58.6 bits), Expect = 6.7e-06, Sum P(2) = 6.7e-06
Identities = 29/73 (39%), Positives = 50/73 (68%)
Query: 1254 LKEGCTVKGVVKNITDYGAFIDLG-GIDGLLHITDIAWRRVKHPSEILTIGQDISTKILK 1312
L+ G ++GVV N+T++GAF+D+G DGL+HI+ +A R V+ P E++ G + K+L+
Sbjct: 615 LEPGMRLEGVVTNVTNFGAFVDVGVHQDGLVHISHLADRFVRDPREVVKAGDVVQVKVLE 674
Query: 1313 YDQEKNRVSLGMK 1325
D + R++L M+
Sbjct: 675 VDIPRRRIALSMR 687
Score = 144 (55.7 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 31/72 (43%), Positives = 50/72 (69%)
Query: 1342 GTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEM-DWINKNVTPSKIVQLNDTVEIMILEI 1400
G RL G VTN+T++GAFV++ +GLVHIS + D ++ P ++V+ D V++ +LE+
Sbjct: 618 GMRLEGVVTNVTNFGAFVDVGVHQDGLVHISHLADRFVRD--PREVVKAGDVVQVKVLEV 675
Query: 1401 NEERRRISLGMK 1412
+ RRRI+L M+
Sbjct: 676 DIPRRRIALSMR 687
Score = 45 (20.9 bits), Expect = 6.7e-06, Sum P(2) = 6.7e-06
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 1164 EKAMESGEIITGTINGKVKGG 1184
EK G +++ ++GK +GG
Sbjct: 149 EKVWSEGLLVSSLVDGKAEGG 169
>TIGR_CMR|CPS_2207 [details] [associations]
symbol:CPS_2207 "polyribonucleotide
nucleotidyltransferase" species:167879 "Colwellia psychrerythraea
34H" [GO:0004654 "polyribonucleotide nucleotidyltransferase
activity" evidence=ISS] [GO:0006402 "mRNA catabolic process"
evidence=ISS] HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012162 InterPro:IPR015848
Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 GO:GO:0003723
GO:GO:0006396 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962
GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS HOGENOM:HOG000218326
ProtClustDB:PRK11824 RefSeq:YP_268932.1 ProteinModelPortal:Q482T5
SMR:Q482T5 STRING:Q482T5 GeneID:3518463 KEGG:cps:CPS_2207
PATRIC:21467529 BioCyc:CPSY167879:GI48-2277-MONOMER Uniprot:Q482T5
Length = 705
Score = 145 (56.1 bits), Expect = 6.7e-06, P = 6.7e-06
Identities = 32/78 (41%), Positives = 50/78 (64%)
Query: 1250 LIETLKEGCTVKGVVKNITDYGAFID-LGGIDGLLHITDIAWRRVKHPSEILTIGQDIST 1308
L ++ G G V I D+GAF++ L G DGL+HI+ I+ RV + SE+LT GQ++
Sbjct: 615 LTAEIEVGTLYTGKVVRIVDFGAFVNVLPGKDGLVHISQISEERVNNVSEVLTEGQEVKV 674
Query: 1309 KILKYDQEKNRVSLGMKQ 1326
K+L+ D++ RV L +K+
Sbjct: 675 KVLEVDRQ-GRVRLSIKE 691
>UNIPROTKB|Q9KU76 [details] [associations]
symbol:pnp "Polyribonucleotide nucleotidyltransferase"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
evidence=ISS] [GO:0006401 "RNA catabolic process" evidence=ISS]
HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR009019 InterPro:IPR012162
InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575 Pfam:PF03726
PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401
GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 SUPFAM:SSF54814
Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962 GO:GO:0004654
Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS ProtClustDB:PRK11824 PIR:E82298
RefSeq:NP_230296.1 ProteinModelPortal:Q9KU76 SMR:Q9KU76
PRIDE:Q9KU76 DNASU:2615437 GeneID:2615437 KEGG:vch:VC0647
PATRIC:20080407 Uniprot:Q9KU76
Length = 709
Score = 145 (56.1 bits), Expect = 6.8e-06, P = 6.8e-06
Identities = 32/80 (40%), Positives = 51/80 (63%)
Query: 1248 QKLIETLKEGCTVKGVVKNITDYGAFID-LGGIDGLLHITDIAWRRVKHPSEILTIGQDI 1306
Q++ ++ G G V + D+GAF+ L G DGL+HI+ IA +RV+ S+ LT GQ++
Sbjct: 614 QEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRVEKVSDYLTEGQEV 673
Query: 1307 STKILKYDQEKNRVSLGMKQ 1326
K+L+ D++ RV L MK+
Sbjct: 674 QVKVLEIDRQ-GRVRLSMKE 692
>TIGR_CMR|VC_0647 [details] [associations]
symbol:VC_0647 "polyribonucleotide nucleotidyltransferase"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004654
"polyribonucleotide nucleotidyltransferase activity" evidence=ISS]
[GO:0006401 "RNA catabolic process" evidence=ISS] HAMAP:MF_01595
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR009019 InterPro:IPR012162 InterPro:IPR015848
Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401 GO:GO:0006396
GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 HSSP:P05055 SUPFAM:SSF54814 Pfam:PF03725
SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962 GO:GO:0004654
Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS ProtClustDB:PRK11824 PIR:E82298
RefSeq:NP_230296.1 ProteinModelPortal:Q9KU76 SMR:Q9KU76
PRIDE:Q9KU76 DNASU:2615437 GeneID:2615437 KEGG:vch:VC0647
PATRIC:20080407 Uniprot:Q9KU76
Length = 709
Score = 145 (56.1 bits), Expect = 6.8e-06, P = 6.8e-06
Identities = 32/80 (40%), Positives = 51/80 (63%)
Query: 1248 QKLIETLKEGCTVKGVVKNITDYGAFID-LGGIDGLLHITDIAWRRVKHPSEILTIGQDI 1306
Q++ ++ G G V + D+GAF+ L G DGL+HI+ IA +RV+ S+ LT GQ++
Sbjct: 614 QEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRVEKVSDYLTEGQEV 673
Query: 1307 STKILKYDQEKNRVSLGMKQ 1326
K+L+ D++ RV L MK+
Sbjct: 674 QVKVLEIDRQ-GRVRLSMKE 692
>WB|WBGene00021604 [details] [associations]
symbol:Y46H3C.4 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] InterPro:IPR002205
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 SMART:SM00434 GO:GO:0005524 GO:GO:0009792
GO:GO:0006898 GO:GO:0040007 GO:GO:0002119 GO:GO:0006261
GO:GO:0000819 GO:GO:0006312 GO:GO:0070683 GO:GO:0000712
GO:GO:0000795 GO:GO:0006265 eggNOG:COG0188 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10 KO:K03164
GeneTree:ENSGT00390000016222 EMBL:FO081587 RefSeq:NP_503483.2
UniGene:Cel.28200 ProteinModelPortal:Q9N4W3 SMR:Q9N4W3 PaxDb:Q9N4W3
EnsemblMetazoa:Y46H3C.4 GeneID:189967 KEGG:cel:CELE_Y46H3C.4
UCSC:Y46H3C.4 CTD:189967 WormBase:Y46H3C.4 InParanoid:Q9N4W3
OMA:KDSASAQ NextBio:944220 Uniprot:Q9N4W3
Length = 616
Score = 101 (40.6 bits), Expect = 7.7e-06, Sum P(2) = 7.7e-06
Identities = 30/99 (30%), Positives = 51/99 (51%)
Query: 97 SLRCTLVDGQGNFGSIDGDSAAAMRYTECRLNKISNELLIDLDKETIDFISNYDGKEK-E 155
SL T+V ++G DSA+A +Y +L+ ++ L D + F+ Y+ ++ E
Sbjct: 130 SLMTTIVHLAQDYGG--KDSASA-QYIFTQLSPVTRTLFPSHDDNVLRFL--YEENQRIE 184
Query: 156 PSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGV 194
P P +L+NG+ GI G TNIP +N E++ +
Sbjct: 185 PEWYCPISPMVLVNGAQGIDTGWRTNIPNYNPRELVKNI 223
Score = 95 (38.5 bits), Expect = 7.7e-06, Sum P(2) = 7.7e-06
Identities = 24/67 (35%), Positives = 39/67 (58%)
Query: 32 RALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGET--MGKYHPHGDVSIYDAL 89
R++P + DG KP R+VLFA + ++ + VK A++ G M YH HG+ S+ +
Sbjct: 80 RSIPCLVDGFKPGQRKVLFACFKRSD---KHGVKVAQLAGGVADMSAYH-HGEQSLMTTI 135
Query: 90 VRMAQSF 96
V +AQ +
Sbjct: 136 VHLAQDY 142
>UNIPROTKB|Q9N4W3 [details] [associations]
symbol:Y46H3C.4 "Protein Y46H3C.4" species:6239
"Caenorhabditis elegans" [GO:0009295 "nucleoid" evidence=IBA]
[GO:0007059 "chromosome segregation" evidence=IBA] [GO:0006312
"mitotic recombination" evidence=IBA] [GO:0006265 "DNA topological
change" evidence=IBA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IBA] [GO:0000819 "sister
chromatid segregation" evidence=IBA] [GO:0000795 "synaptonemal
complex" evidence=IBA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IBA] InterPro:IPR002205
InterPro:IPR013757 InterPro:IPR013758 InterPro:IPR013760
Pfam:PF00521 SMART:SM00434 GO:GO:0005524 GO:GO:0009792
GO:GO:0006898 GO:GO:0040007 GO:GO:0002119 GO:GO:0006261
GO:GO:0000819 GO:GO:0006312 GO:GO:0070683 GO:GO:0000712
GO:GO:0000795 GO:GO:0006265 eggNOG:COG0188 GO:GO:0003918
Gene3D:3.90.199.10 SUPFAM:SSF56719 Gene3D:1.10.268.10 KO:K03164
GeneTree:ENSGT00390000016222 EMBL:FO081587 RefSeq:NP_503483.2
UniGene:Cel.28200 ProteinModelPortal:Q9N4W3 SMR:Q9N4W3 PaxDb:Q9N4W3
EnsemblMetazoa:Y46H3C.4 GeneID:189967 KEGG:cel:CELE_Y46H3C.4
UCSC:Y46H3C.4 CTD:189967 WormBase:Y46H3C.4 InParanoid:Q9N4W3
OMA:KDSASAQ NextBio:944220 Uniprot:Q9N4W3
Length = 616
Score = 101 (40.6 bits), Expect = 7.7e-06, Sum P(2) = 7.7e-06
Identities = 30/99 (30%), Positives = 51/99 (51%)
Query: 97 SLRCTLVDGQGNFGSIDGDSAAAMRYTECRLNKISNELLIDLDKETIDFISNYDGKEK-E 155
SL T+V ++G DSA+A +Y +L+ ++ L D + F+ Y+ ++ E
Sbjct: 130 SLMTTIVHLAQDYGG--KDSASA-QYIFTQLSPVTRTLFPSHDDNVLRFL--YEENQRIE 184
Query: 156 PSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGV 194
P P +L+NG+ GI G TNIP +N E++ +
Sbjct: 185 PEWYCPISPMVLVNGAQGIDTGWRTNIPNYNPRELVKNI 223
Score = 95 (38.5 bits), Expect = 7.7e-06, Sum P(2) = 7.7e-06
Identities = 24/67 (35%), Positives = 39/67 (58%)
Query: 32 RALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGET--MGKYHPHGDVSIYDAL 89
R++P + DG KP R+VLFA + ++ + VK A++ G M YH HG+ S+ +
Sbjct: 80 RSIPCLVDGFKPGQRKVLFACFKRSD---KHGVKVAQLAGGVADMSAYH-HGEQSLMTTI 135
Query: 90 VRMAQSF 96
V +AQ +
Sbjct: 136 VHLAQDY 142
>UNIPROTKB|Q0BZL2 [details] [associations]
symbol:HNE_2386 "S1 RNA binding domain protein"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR003029
InterPro:IPR003583 InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126
SMART:SM00278 SMART:SM00732 GO:GO:0003677 GO:GO:0006281
GO:GO:0003723 GO:GO:0016788 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 EMBL:CP000158 GenomeReviews:CP000158_GR
InterPro:IPR022967 SMART:SM00316 Gene3D:3.30.420.140 eggNOG:COG2183
Gene3D:1.10.150.310 Gene3D:1.10.3500.10 InterPro:IPR023323
InterPro:IPR023097 InterPro:IPR018974 Pfam:PF09371 OMA:YKQKRRT
Gene3D:1.10.10.650 InterPro:IPR023319 HOGENOM:HOG000270497
KO:K06959 RefSeq:YP_761081.1 ProteinModelPortal:Q0BZL2 SMR:Q0BZL2
STRING:Q0BZL2 GeneID:4287336 KEGG:hne:HNE_2386 PATRIC:32217623
ProtClustDB:CLSK2531628 BioCyc:HNEP228405:GI69-2408-MONOMER
Uniprot:Q0BZL2
Length = 771
Score = 156 (60.0 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 31/82 (37%), Positives = 52/82 (63%)
Query: 1251 IETLKEGCTVKGVVKNITDYGAFIDLG-GIDGLLHITDIAWRRVKHPSEILTIGQDISTK 1309
+ LK G ++GVV N+T +GAF+D+G DGL+HI++++ +K P + + GQ +S
Sbjct: 654 VTDLKPGMRLEGVVTNVTAFGAFVDIGVHQDGLVHISEMSDTFIKDPHDAVKTGQVVSVT 713
Query: 1310 ILKYDQEKNRVSLGMKQLGIDP 1331
+++ D + R+ L MKQ G P
Sbjct: 714 VMEVDVARKRIGLSMKQGGKRP 735
Score = 145 (56.1 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 41/94 (43%), Positives = 53/94 (56%)
Query: 1326 QLGIDPWIGLSFRYPRGTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEM-DWINKNVTPS 1384
Q GID L P G RL G VTN+T +GAFV+I +GLVHISEM D K+ P
Sbjct: 648 QEGIDKVTDLK---P-GMRLEGVVTNVTAFGAFVDIGVHQDGLVHISEMSDTFIKD--PH 701
Query: 1385 KIVQLNDTVEIMILEINEERRRISLGMKQCKDNP 1418
V+ V + ++E++ R+RI L MKQ P
Sbjct: 702 DAVKTGQVVSVTVMEVDVARKRIGLSMKQGGKRP 735
Score = 51 (23.0 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 19/62 (30%), Positives = 35/62 (56%)
Query: 1238 VIEESMG-EERQ--KLIETLKEGCTVKGVVKNITDYGAFID---LGGI-DGLLHITDIAW 1290
+I + +G +ERQ ++E L+EG TV + + + +D L + + L ++TD+A
Sbjct: 19 IIADELGVQERQVQAVMELLEEGATVPFIARYRKERTGGLDDTQLRNLAERLDYLTDLAK 78
Query: 1291 RR 1292
RR
Sbjct: 79 RR 80
Score = 44 (20.5 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 19/68 (27%), Positives = 32/68 (47%)
Query: 1234 SHRA--VIE-ESMGEERQKLIETLKEGCTVKGVVKNITDYG-AFIDLGGIDGLLHITDIA 1289
SHRA V+ + G + KL +++G + + T++G A G D L+ + A
Sbjct: 230 SHRALAVLRGQKEGVLKVKLAVPVEQGREHPALREIRTEFGIAKKGRPGDDWLMDTAEAA 289
Query: 1290 WRRVKHPS 1297
W+ PS
Sbjct: 290 WKSKMEPS 297
Score = 38 (18.4 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 213 PAPDFPTAGIIYGLSSVHD 231
P P+F TA G+ V D
Sbjct: 638 PRPEFKTATFQEGIDKVTD 656
>TAIR|locus:2088644 [details] [associations]
symbol:RRP5 "Ribosomal RNA Processing 5" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0001510 "RNA methylation" evidence=RCA]
[GO:0006606 "protein import into nucleus" evidence=RCA] [GO:0006364
"rRNA processing" evidence=IMP] [GO:0009553 "embryo sac
development" evidence=IMP] InterPro:IPR003029 InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 SMART:SM00386 GO:GO:0005886 EMBL:CP002686
GO:GO:0005730 GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 KO:K14792 OMA:LHLADIY
IPI:IPI00527296 RefSeq:NP_187803.4 UniGene:At.50175 PRIDE:F4J8K6
EnsemblPlants:AT3G11964.1 GeneID:820370 KEGG:ath:AT3G11964
Uniprot:F4J8K6
Length = 1896
Score = 164 (62.8 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 49/175 (28%), Positives = 94/175 (53%)
Query: 1246 ERQKLIETLKEGCTVKGVVKNITDYGAFIDLGG-IDGLLHITDIAWRRVKHPSEILTIGQ 1304
+R + IE L V+G VKN G FI L ++ + ++++ VK P + +G+
Sbjct: 1334 KRFERIEDLSPDMGVQGYVKNTMSKGCFIILSRTVEAKVRLSNLCDTFVKEPEKEFPVGK 1393
Query: 1305 DISTKILKYDQEKNRVSLGMKQL--GIDPWIGLSFRYPR---GTRLLGKVTNLTDYGAFV 1359
++ ++L + R+ + +K + G P S+ + G + G++ + +G F+
Sbjct: 1394 LVTGRVLNVEPLSKRIEVTLKTVNAGGRPK-SESYDLKKLHVGDMISGRIRRVEPFGLFI 1452
Query: 1360 EIEK-GIEGLVHISEM-DWINKNVTPSKIVQLNDTVEIMILEINEERRRISLGMK 1412
+I++ G+ GL HIS++ D +NV + ++V IL+++EE++RISLGMK
Sbjct: 1453 DIDQTGMVGLCHISQLSDDRMENVQAR--YKAGESVRAKILKLDEEKKRISLGMK 1505
Score = 50 (22.7 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 34/136 (25%), Positives = 63/136 (46%)
Query: 819 VSEIRK--MGRSTQGVILITVENKSKLCGVQRLCKITMIKKYIPVITIDGPTASGKGTV- 875
V E+ K + + G IT+ + KL + T+ + + ++ + + KGT+
Sbjct: 608 VGEVVKCRVTSAVHGTQRITLNDSIKLGSIVSGIIDTITSQAV-IVRVKSKSVV-KGTIS 665
Query: 876 AQLVA-----SKLGFHYLDSG-ALYRLVTLSAINNNIQLDNELELVILIKKL--NYNFLG 927
A+ +A +KL L G L +L+ L NN+ L ++ L+ L ++L ++N L
Sbjct: 666 AEHLADHHEQAKLIMSLLRPGYELDKLLVLDIEGNNMALSSKYSLIKLAEELPSDFNQLQ 725
Query: 928 KEVYLNGVNVTTLIRN 943
++G V LI N
Sbjct: 726 PNSVVHGY-VCNLIEN 740
Score = 46 (21.3 bits), Expect = 2.9e-05, Sum P(3) = 2.9e-05
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 728 RGVIGMRLEKKQKVIALLVSNNQKQSVLTATENGY 762
RG I LE Q+V A++ ++ VL+ E+GY
Sbjct: 925 RG-ISKELEVHQRVSAVVEIVKEQHLVLSIPEHGY 958
Score = 42 (19.8 bits), Expect = 7.1e-05, Sum P(3) = 7.1e-05
Identities = 23/85 (27%), Positives = 37/85 (43%)
Query: 900 SAINNNIQLDNELELVILIKKLNYNFLG--KEVYLNG--------VNVTTL--IRNEKVS 947
S I IQ N+L +V+ +N N LG + ++ G VN L R E++
Sbjct: 841 SLIKGTIQEQNDLGVVVNFDNIN-NVLGFIPQHHMGGATLVPGSVVNAVVLDISRAERLV 899
Query: 948 NNASKIAKFKNIRKELFKIQVKFRK 972
+ + + N+ KE+ K RK
Sbjct: 900 DLSLRPELLNNLTKEVSNSSKKKRK 924
Score = 41 (19.5 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 312 IPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEIL 351
IP +++N Q+ L+N + L NG L +LK L
Sbjct: 312 IPGMMVNARV-QSVLENGILFDFLTYFNGTVDLFHLKNPL 350
>UNIPROTKB|Q88AQ9 [details] [associations]
symbol:PSPTO_0327 "S1 RNA binding domain protein"
species:223283 "Pseudomonas syringae pv. tomato str. DC3000"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR003029
InterPro:IPR003583 InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126
SMART:SM00278 SMART:SM00732 GO:GO:0003677 GO:GO:0006281
GO:GO:0003723 GO:GO:0016788 EMBL:AE016853 GenomeReviews:AE016853_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 Gene3D:3.30.420.140
eggNOG:COG2183 Gene3D:1.10.150.310 Gene3D:1.10.3500.10
InterPro:IPR023323 InterPro:IPR023097 InterPro:IPR018974
Pfam:PF09371 OMA:YKQKRRT Gene3D:1.10.10.650 InterPro:IPR023319
HOGENOM:HOG000270497 KO:K06959 RefSeq:NP_790177.1
ProteinModelPortal:Q88AQ9 SMR:Q88AQ9 GeneID:1181936
KEGG:pst:PSPTO_0327 PATRIC:19991830 ProtClustDB:CLSK2299216
BioCyc:PSYR223283:GJIX-323-MONOMER Uniprot:Q88AQ9
Length = 773
Score = 148 (57.2 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 31/84 (36%), Positives = 54/84 (64%)
Query: 1246 ERQKLIETLKE---GCTVKGVVKNITDYGAFIDLG-GIDGLLHITDIAWRRVKHPSEILT 1301
E Q+ +E LK+ G ++GVV N+T++GAF+D+G DGL+HI+ ++ + +K P E +
Sbjct: 635 EFQEGVEDLKDLQPGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVK 694
Query: 1302 IGQDISTKILKYDQEKNRVSLGMK 1325
G + K+++ D + RV L M+
Sbjct: 695 AGDVVKVKVMEIDIPRKRVGLSMR 718
Score = 133 (51.9 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 32/80 (40%), Positives = 49/80 (61%)
Query: 1342 GTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEMDWINKNVT-PSKIVQLNDTVEIMILEI 1400
G L G VTN+T++GAFV+I +GLVHIS + K + P + V+ D V++ ++EI
Sbjct: 649 GMILEGVVTNVTNFGAFVDIGVHQDGLVHISALS--EKFIKDPREAVKAGDVVKVKVMEI 706
Query: 1401 NEERRRISLGMKQCKDNPWE 1420
+ R+R+ L M+ D P E
Sbjct: 707 DIPRKRVGLSMRM-SDTPGE 725
Score = 47 (21.6 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 25/108 (23%), Positives = 45/108 (41%)
Query: 1029 IKRDIR---DKTRNLSPLKCPEQAHLLNTSKMNINQVVNQILDCFATLFKESLLRHDMRS 1085
+ RDI+ KTR L L P + ++ + + ++ D LF + L D +
Sbjct: 85 LARDIKLADTKTR-LEDLYLPYKQKRRTKGQIALEAGLGELAD---GLFNDPSLTPDAEA 140
Query: 1086 GEVISAEVIGLDRNFVIINADLKSEAFIPIEEFKNDNGELEVKIGDFV 1133
+ AE + + A L+ +I +E F D L+ K+ F+
Sbjct: 141 ARFVDAE-----KGVADVKAALEGAKYILMERFAEDASLLD-KLRSFL 182
Score = 40 (19.1 bits), Expect = 6.5e-05, Sum P(2) = 6.5e-05
Identities = 20/79 (25%), Positives = 35/79 (44%)
Query: 960 RKELFKIQVKFRKFPGLVADGRDMGTTVFPDAFLKIFL-----TADIKQRTKRRYKQLMQ 1014
+K K Q+ G +ADG ++ PDA F+ AD+K + LM+
Sbjct: 107 QKRRTKGQIALEAGLGELADGLFNDPSLTPDAEAARFVDAEKGVADVKAALEGAKYILME 166
Query: 1015 K-GFSVSMSDLLINLIKRD 1032
+ S+ D L + +K++
Sbjct: 167 RFAEDASLLDKLRSFLKQE 185
>POMBASE|SPAC10F6.02c [details] [associations]
symbol:prp22 "ATP-dependent RNA helicase Prp22"
species:4896 "Schizosaccharomyces pombe" [GO:0000390 "spliceosomal
complex disassembly" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=ISS] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR003029 InterPro:IPR007502 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00575 Pfam:PF04408 PROSITE:PS00690
PROSITE:PS50126 PROSITE:PS51194 SMART:SM00490 SMART:SM00847
PomBase:SPAC10F6.02c GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0005681 GO:GO:0003723
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 eggNOG:COG1643
InterPro:IPR011709 Pfam:PF07717 GO:GO:0004004 HOGENOM:HOG000175261
InterPro:IPR022967 SMART:SM00316 GO:GO:0000390 KO:K12818
OMA:NAWCYEN PIR:T37496 RefSeq:NP_593253.1 ProteinModelPortal:O42643
IntAct:O42643 STRING:O42643 PRIDE:O42643
EnsemblFungi:SPAC10F6.02c.1 GeneID:2542978 KEGG:spo:SPAC10F6.02c
OrthoDB:EOG45TGW9 NextBio:20804011 Uniprot:O42643
Length = 1168
Score = 148 (57.2 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 30/71 (42%), Positives = 46/71 (64%)
Query: 1262 GVVKNITDYGAFIDLGGI----DGLLHITDIAWR-RVKHPSEILTIGQDISTKILKYDQE 1316
GVV I D+GAF+ L G DGL+HI++I R+ HPSE ++ GQ + K+++ D+
Sbjct: 212 GVVSGIKDFGAFVTLDGFRKRTDGLVHISNIQLNGRLDHPSEAVSYGQPVFVKVIRIDES 271
Query: 1317 KNRVSLGMKQL 1327
R+SL MK++
Sbjct: 272 AKRISLSMKEV 282
Score = 51 (23.0 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 25/95 (26%), Positives = 42/95 (44%)
Query: 204 SINDLIKII-PAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRA--KTHIEEFNRENRTAII 260
+I+ LIK I P D PT + G +SV+ + + + + + + N T +
Sbjct: 66 NISRLIKEIKPKDDIPTDNVNNGSNSVNGASHDLDSKDVDKQHQRKMFPGLSIPNSTNNL 125
Query: 261 IDELPYQVNKKSLLEKISQLVKEKKLECISNLRDE 295
D N LE++S L K ++ + S RDE
Sbjct: 126 RDRPALMDNAMDELEELSTLAKTRRNDRDSR-RDE 159
Score = 50 (22.7 bits), Expect = 0.00020, Sum P(3) = 0.00020
Identities = 12/69 (17%), Positives = 34/69 (49%)
Query: 612 IPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSN 671
IP + N R +P + ++ E+++ + N RD ++ +++ ++++ +
Sbjct: 118 IPNSTNNLRDRPALMDNAMDELEELSTLAKTRRNDRDSRRDERHYLNGIRERRERSISPS 177
Query: 672 FSNPRKSGI 680
FS+ ++ I
Sbjct: 178 FSHHSRTSI 186
Score = 38 (18.4 bits), Expect = 0.00020, Sum P(3) = 0.00020
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 272 SLLEKISQLVKEKK 285
S L+ IS+L+KE K
Sbjct: 62 SFLQNISRLIKEIK 75
>UNIPROTKB|F1P3T9 [details] [associations]
symbol:PDCD11 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0008134 "transcription
factor binding" evidence=IEA] InterPro:IPR003029 InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126 PROSITE:PS50293
SMART:SM00386 GO:GO:0005829 GO:GO:0005634 GO:GO:0006397
GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
OMA:LHLADIY GeneTree:ENSGT00390000012228 EMBL:AADN02030831
IPI:IPI00603042 Ensembl:ENSGALT00000013446 Uniprot:F1P3T9
Length = 1841
Score = 116 (45.9 bits), Expect = 4.2e-05, Sum P(3) = 4.2e-05
Identities = 27/115 (23%), Positives = 59/115 (51%)
Query: 1213 EGKTMDFKVIKLDRKRNNVVLSHRAVIEESMGEERQ-KLIETLKEGCTVKGVVKNITDYG 1271
EG + +V+ L K + ++L ++ + ++ EE+ + ++ G + G V+ + +G
Sbjct: 694 EGDVLP-RVMCLSDKGDRIILCRKSAVISAVQEEQVVRSFSEIQPGVLLIGYVRKVMPFG 752
Query: 1272 AFIDLG-GIDGLLHITDIAWRRVKHPSEILTIGQDISTKILKYDQEKNRVSLGMK 1325
F++ G+ GL ++ + V + +GQ + K++ D+EK RV L +K
Sbjct: 753 VFVEFPFGVTGLAPKVSMSDKFVTDTKDHFVVGQTVIAKVMSIDEEKQRVLLSLK 807
Score = 91 (37.1 bits), Expect = 4.2e-05, Sum P(3) = 4.2e-05
Identities = 45/157 (28%), Positives = 73/157 (46%)
Query: 1443 GIFIGLDGNIDG---LIHLSDLSWTDPGEEIIRNFKKGDEIEAIILSIDVEKERISLGIK 1499
G+ I L G G + HLSD +T E + +FK G + ILS E +I L ++
Sbjct: 1246 GLTITLPGGKAGKVSIFHLSD-KYT---ESPLSDFKIGKVVRCYILSN--ENGKIQLSLR 1299
Query: 1500 QLEGDPFNN-------YVNIND--KGSLVNGIIKSIDTNKGAIIQLSNEVEG---YLRIS 1547
Q +P N+ I D KG LV G +KS+ T G LS + G + +S
Sbjct: 1300 QSRLNPRNSRKVEDVEITCIKDVKKGQLVRGYVKSV-TPSGVFFGLSASLLGRILFQNVS 1358
Query: 1548 ----EEDNKHEKKLKIGENIDVLTVLIDHKTRYIQLS 1580
++ + +EK L G+ + + ++ K +++LS
Sbjct: 1359 PYFVQKHSLYEKYLPEGKLLTAKVLDVNKKENHVELS 1395
Score = 43 (20.2 bits), Expect = 4.2e-05, Sum P(3) = 4.2e-05
Identities = 10/39 (25%), Positives = 23/39 (58%)
Query: 175 AVGMATNIPPHNLTEVIDGVLYVLHNPECSINDLIKIIP 213
A +A +I P + E+ +G+L++ E ++ +L+ +P
Sbjct: 71 AKDIAISIEPLTIKELCEGMLFLGCIKEVTVFELVISLP 109
>UNIPROTKB|Q3IJ73 [details] [associations]
symbol:pnp "Polyribonucleotide nucleotidyltransferase"
species:326442 "Pseudoalteromonas haloplanktis TAC125" [GO:0005515
"protein binding" evidence=IPI] HAMAP:MF_01595 InterPro:IPR003029
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR009019
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 GO:GO:0003723 GO:GO:0006396 GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 SUPFAM:SSF54814 HSSP:Q9UXC2 Pfam:PF03725
SUPFAM:SSF55666 eggNOG:COG1185 HOGENOM:HOG000218327 KO:K00962
GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS ProtClustDB:PRK11824 EMBL:CR954246
RefSeq:YP_339522.1 ProteinModelPortal:Q3IJ73 SMR:Q3IJ73
STRING:Q3IJ73 GeneID:3709905 GenomeReviews:CR954246_GR
KEGG:pha:PSHAa1001 PATRIC:32295529
BioCyc:PHAL326442:GJIU-1008-MONOMER Uniprot:Q3IJ73
Length = 708
Score = 137 (53.3 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 30/80 (37%), Positives = 52/80 (65%)
Query: 1248 QKLIETLKEGCTVKGVVKNITDYGAFID-LGGIDGLLHITDIAWRRVKHPSEILTIGQDI 1306
++L L+ G +G V I D+GAF++ L G DGL+HI+ I+ RV + ++ L+ GQ++
Sbjct: 615 EQLTAELEVGTIYEGKVVRIVDFGAFVNILPGKDGLVHISQISTERVNNVTDHLSEGQEV 674
Query: 1307 STKILKYDQEKNRVSLGMKQ 1326
K+L+ D++ RV L +K+
Sbjct: 675 KVKVLEVDRQ-GRVRLSIKE 693
>UNIPROTKB|P46837 [details] [associations]
symbol:yhgF "predicted transcriptional accessory protein"
species:83333 "Escherichia coli K-12" [GO:0016788 "hydrolase
activity, acting on ester bonds" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR003029
InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126 SMART:SM00732
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006139 EMBL:U18997 GO:GO:0003723
GO:GO:0016788 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 Gene3D:3.30.420.140 eggNOG:COG2183
Gene3D:1.10.150.310 Gene3D:1.10.3500.10 InterPro:IPR023323
InterPro:IPR023097 InterPro:IPR018974 Pfam:PF09371 OMA:YKQKRRT
Gene3D:1.10.10.650 InterPro:IPR023319 PIR:B65136 RefSeq:NP_417866.4
RefSeq:YP_492025.1 ProteinModelPortal:P46837 SMR:P46837
DIP:DIP-12337N IntAct:P46837 MINT:MINT-1288997 PRIDE:P46837
EnsemblBacteria:EBESCT00000002880 EnsemblBacteria:EBESCT00000016404
GeneID:12932731 GeneID:947911 KEGG:ecj:Y75_p3769 KEGG:eco:b3407
PATRIC:32122250 EchoBASE:EB2768 EcoGene:EG12932
HOGENOM:HOG000270497 KO:K06959 ProtClustDB:CLSK862831
BioCyc:EcoCyc:G7746-MONOMER BioCyc:ECOL316407:JW3370-MONOMER
Genevestigator:P46837 Uniprot:P46837
Length = 773
Score = 141 (54.7 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 34/80 (42%), Positives = 52/80 (65%)
Query: 1342 GTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEMDWINKNVT-PSKIVQLNDTVEIMILEI 1400
G L G VTN+T++GAFV+I +GLVHIS + NK V P +V+ D V++ +LE+
Sbjct: 651 GMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLS--NKFVEDPHTVVKAGDIVKVKVLEV 708
Query: 1401 NEERRRISLGMKQCKDNPWE 1420
+ +R+RI+L M+ + P E
Sbjct: 709 DLQRKRIALTMR-LDEQPGE 727
Score = 139 (54.0 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 25/73 (34%), Positives = 49/73 (67%)
Query: 1254 LKEGCTVKGVVKNITDYGAFIDLG-GIDGLLHITDIAWRRVKHPSEILTIGQDISTKILK 1312
L+ G ++G V N+T++GAF+D+G DGL+HI+ ++ + V+ P ++ G + K+L+
Sbjct: 648 LQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLE 707
Query: 1313 YDQEKNRVSLGMK 1325
D ++ R++L M+
Sbjct: 708 VDLQRKRIALTMR 720
Score = 47 (21.6 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 1087 EVISAEVIGLDRNFVIINADLKSEAFIPIEEFKNDNGELEVKIGDFV 1133
EV +A+ + D+ A L +I +E F D L K+ D++
Sbjct: 139 EVAAAQYVYADKGVADTKAALDGARYILMERFAED-AALLAKVRDYL 184
>TIGR_CMR|CBU_0852 [details] [associations]
symbol:CBU_0852 "polyribonucleotide
nucleotidyltransferase" species:227377 "Coxiella burnetii RSA 493"
[GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
evidence=ISS] [GO:0006401 "RNA catabolic process" evidence=ISS]
HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012162 InterPro:IPR015848
Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 GO:GO:0003723
GO:GO:0006396 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 HSSP:P05055 Pfam:PF03725 SUPFAM:SSF55666
eggNOG:COG1185 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591 OMA:YTMRVVS
HOGENOM:HOG000218326 ProtClustDB:PRK11824 RefSeq:NP_819872.1
ProteinModelPortal:Q83D87 SMR:Q83D87 PRIDE:Q83D87 GeneID:1208745
KEGG:cbu:CBU_0852 PATRIC:17930401
BioCyc:CBUR227377:GJ7S-847-MONOMER Uniprot:Q83D87
Length = 696
Score = 135 (52.6 bits), Expect = 7.8e-05, P = 7.8e-05
Identities = 33/97 (34%), Positives = 54/97 (55%)
Query: 1232 VLSHRAVIEESMGEERQKLIETLKEGCTVKGVVKNITDYGAFID-LGGIDGLLHITDIAW 1290
+ +H E+ ++L ++ G +G V ITD+GAF+ L GL+HI+ IA
Sbjct: 600 IAAHTTEEGEAAKRRIEELTAEVELGKVYEGTVVKITDFGAFVQILPNTQGLVHISQIAQ 659
Query: 1291 RRVKHPSEILTIGQDISTKILKYDQEKNRVSLGMKQL 1327
RV++ + L GQ I K+++ D++ RV L MKQ+
Sbjct: 660 ERVENVRDYLEEGQVIRVKVIEIDRQ-GRVRLSMKQI 695
>UNIPROTKB|Q9KNL6 [details] [associations]
symbol:VC_2716 "Putative uncharacterized protein"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003029 InterPro:IPR003583
InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126 SMART:SM00278
SMART:SM00732 GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0006281 GO:GO:0003723 GO:GO:0016788 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
HSSP:P05055 Gene3D:3.30.420.140 Gene3D:1.10.150.310
Gene3D:1.10.3500.10 InterPro:IPR023323 InterPro:IPR023097
InterPro:IPR018974 Pfam:PF09371 OMA:YKQKRRT Gene3D:1.10.10.650
InterPro:IPR023319 KO:K06959 PIR:E82042 RefSeq:NP_232343.1
ProteinModelPortal:Q9KNL6 SMR:Q9KNL6 DNASU:2615544 GeneID:2615544
KEGG:vch:VC2716 PATRIC:20084450 ProtClustDB:CLSK2298315
Uniprot:Q9KNL6
Length = 773
Score = 146 (56.5 bits), Expect = 8.4e-05, Sum P(2) = 8.4e-05
Identities = 27/82 (32%), Positives = 52/82 (63%)
Query: 1251 IETLKEGCTVKGVVKNITDYGAFIDLG-GIDGLLHITDIAWRRVKHPSEILTIGQDISTK 1309
+ L+ G ++GVV N+ ++GAF+D+G DGL+HI+ + R + P E++ G + K
Sbjct: 645 VSDLEVGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAGDIVKVK 704
Query: 1310 ILKYDQEKNRVSLGMKQLGIDP 1331
+++ D ++ R++L M+ L +P
Sbjct: 705 VMEVDVQRKRIALSMR-LNDEP 725
Score = 41 (19.5 bits), Expect = 8.4e-05, Sum P(2) = 8.4e-05
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 204 SINDLIKII------PAPDFPTAGIIYGLSSVHD 231
++ D+IK + P P+F TA G+ V D
Sbjct: 614 TVTDIIKELDKPGRDPRPEFKTATFAEGIHEVSD 647
>TIGR_CMR|VC_2716 [details] [associations]
symbol:VC_2716 "conserved hypothetical protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR003029
InterPro:IPR003583 InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126
SMART:SM00278 SMART:SM00732 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0003723 GO:GO:0016788
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 Gene3D:3.30.420.140
Gene3D:1.10.150.310 Gene3D:1.10.3500.10 InterPro:IPR023323
InterPro:IPR023097 InterPro:IPR018974 Pfam:PF09371 OMA:YKQKRRT
Gene3D:1.10.10.650 InterPro:IPR023319 KO:K06959 PIR:E82042
RefSeq:NP_232343.1 ProteinModelPortal:Q9KNL6 SMR:Q9KNL6
DNASU:2615544 GeneID:2615544 KEGG:vch:VC2716 PATRIC:20084450
ProtClustDB:CLSK2298315 Uniprot:Q9KNL6
Length = 773
Score = 146 (56.5 bits), Expect = 8.4e-05, Sum P(2) = 8.4e-05
Identities = 27/82 (32%), Positives = 52/82 (63%)
Query: 1251 IETLKEGCTVKGVVKNITDYGAFIDLG-GIDGLLHITDIAWRRVKHPSEILTIGQDISTK 1309
+ L+ G ++GVV N+ ++GAF+D+G DGL+HI+ + R + P E++ G + K
Sbjct: 645 VSDLEVGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAGDIVKVK 704
Query: 1310 ILKYDQEKNRVSLGMKQLGIDP 1331
+++ D ++ R++L M+ L +P
Sbjct: 705 VMEVDVQRKRIALSMR-LNDEP 725
Score = 41 (19.5 bits), Expect = 8.4e-05, Sum P(2) = 8.4e-05
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 204 SINDLIKII------PAPDFPTAGIIYGLSSVHD 231
++ D+IK + P P+F TA G+ V D
Sbjct: 614 TVTDIIKELDKPGRDPRPEFKTATFAEGIHEVSD 647
>UNIPROTKB|Q8E8N3 [details] [associations]
symbol:tex "Transcriptional accessory protein Tex"
species:211586 "Shewanella oneidensis MR-1" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003029 InterPro:IPR003583 InterPro:IPR006641
Pfam:PF00575 PROSITE:PS50126 SMART:SM00278 SMART:SM00732
GO:GO:0003677 GO:GO:0006281 GO:GO:0003723 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0016788 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
HSSP:P05055 Gene3D:3.30.420.140 Gene3D:1.10.150.310
Gene3D:1.10.3500.10 InterPro:IPR023323 InterPro:IPR023097
InterPro:IPR018974 Pfam:PF09371 OMA:YKQKRRT Gene3D:1.10.10.650
InterPro:IPR023319 HOGENOM:HOG000270497 KO:K06959
RefSeq:NP_720145.1 ProteinModelPortal:Q8E8N3 SMR:Q8E8N3
GeneID:1172212 KEGG:son:SO_4629 PATRIC:23528921
ProtClustDB:CLSK2304501 Uniprot:Q8E8N3
Length = 784
Score = 143 (55.4 bits), Expect = 8.9e-05, Sum P(2) = 8.8e-05
Identities = 31/69 (44%), Positives = 48/69 (69%)
Query: 1345 LLGKVTNLTDYGAFVEIEKGIEGLVHISEMDWINKNVT-PSKIVQLNDTVEIMILEINEE 1403
L G VTN+T++GAFV+I +GLVHIS + +K +T P +V+ D V++ ++E++ E
Sbjct: 655 LEGVVTNVTNFGAFVDIGVHQDGLVHISSLT--DKFITDPHTVVKAGDVVKVKVMEVDVE 712
Query: 1404 RRRISLGMK 1412
RRRI L M+
Sbjct: 713 RRRIGLSMR 721
Score = 139 (54.0 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 25/76 (32%), Positives = 48/76 (63%)
Query: 1251 IETLKEGCTVKGVVKNITDYGAFIDLG-GIDGLLHITDIAWRRVKHPSEILTIGQDISTK 1309
++ LK ++GVV N+T++GAF+D+G DGL+HI+ + + + P ++ G + K
Sbjct: 646 LKDLKPEMILEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKFITDPHTVVKAGDVVKVK 705
Query: 1310 ILKYDQEKNRVSLGMK 1325
+++ D E+ R+ L M+
Sbjct: 706 VMEVDVERRRIGLSMR 721
Score = 44 (20.5 bits), Expect = 8.9e-05, Sum P(2) = 8.8e-05
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 425 GFNKKNYNTI-SKINNISKLQNNDMYKLSDIQAQEILKMPLQR 466
G + T+ S++ + +L + LS IQAQ L LQR
Sbjct: 45 GLDDTQLRTLHSRLGYLRELNDRRQVILSSIQAQGKLTPELQR 87
>TIGR_CMR|SO_4629 [details] [associations]
symbol:SO_4629 "conserved hypothetical protein"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR003029 InterPro:IPR003583 InterPro:IPR006641
Pfam:PF00575 PROSITE:PS50126 SMART:SM00278 SMART:SM00732
GO:GO:0003677 GO:GO:0006281 GO:GO:0003723 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0016788 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
HSSP:P05055 Gene3D:3.30.420.140 Gene3D:1.10.150.310
Gene3D:1.10.3500.10 InterPro:IPR023323 InterPro:IPR023097
InterPro:IPR018974 Pfam:PF09371 OMA:YKQKRRT Gene3D:1.10.10.650
InterPro:IPR023319 HOGENOM:HOG000270497 KO:K06959
RefSeq:NP_720145.1 ProteinModelPortal:Q8E8N3 SMR:Q8E8N3
GeneID:1172212 KEGG:son:SO_4629 PATRIC:23528921
ProtClustDB:CLSK2304501 Uniprot:Q8E8N3
Length = 784
Score = 143 (55.4 bits), Expect = 8.9e-05, Sum P(2) = 8.8e-05
Identities = 31/69 (44%), Positives = 48/69 (69%)
Query: 1345 LLGKVTNLTDYGAFVEIEKGIEGLVHISEMDWINKNVT-PSKIVQLNDTVEIMILEINEE 1403
L G VTN+T++GAFV+I +GLVHIS + +K +T P +V+ D V++ ++E++ E
Sbjct: 655 LEGVVTNVTNFGAFVDIGVHQDGLVHISSLT--DKFITDPHTVVKAGDVVKVKVMEVDVE 712
Query: 1404 RRRISLGMK 1412
RRRI L M+
Sbjct: 713 RRRIGLSMR 721
Score = 139 (54.0 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 25/76 (32%), Positives = 48/76 (63%)
Query: 1251 IETLKEGCTVKGVVKNITDYGAFIDLG-GIDGLLHITDIAWRRVKHPSEILTIGQDISTK 1309
++ LK ++GVV N+T++GAF+D+G DGL+HI+ + + + P ++ G + K
Sbjct: 646 LKDLKPEMILEGVVTNVTNFGAFVDIGVHQDGLVHISSLTDKFITDPHTVVKAGDVVKVK 705
Query: 1310 ILKYDQEKNRVSLGMK 1325
+++ D E+ R+ L M+
Sbjct: 706 VMEVDVERRRIGLSMR 721
Score = 44 (20.5 bits), Expect = 8.9e-05, Sum P(2) = 8.8e-05
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 425 GFNKKNYNTI-SKINNISKLQNNDMYKLSDIQAQEILKMPLQR 466
G + T+ S++ + +L + LS IQAQ L LQR
Sbjct: 45 GLDDTQLRTLHSRLGYLRELNDRRQVILSSIQAQGKLTPELQR 87
>TIGR_CMR|GSU_1593 [details] [associations]
symbol:GSU_1593 "polyribonucleotide
nucleotidyltransferase" species:243231 "Geobacter sulfurreducens
PCA" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0004654
"polyribonucleotide nucleotidyltransferase activity" evidence=ISS]
[GO:0006402 "mRNA catabolic process" evidence=ISS] HAMAP:MF_01595
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 GO:GO:0003723 GO:GO:0006396 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0006402 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967 SMART:SM00316
HSSP:P05055 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185
HOGENOM:HOG000218327 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591 OMA:YTMRVVS
ProtClustDB:PRK11824 RefSeq:NP_952644.4 ProteinModelPortal:Q74CS9
GeneID:2687125 KEGG:gsu:GSU1593 PATRIC:22026031
BioCyc:GSUL243231:GH27-1537-MONOMER Uniprot:Q74CS9
Length = 697
Score = 134 (52.2 bits), Expect = 0.00010, P = 0.00010
Identities = 38/144 (26%), Positives = 76/144 (52%)
Query: 1187 VLTNGLKAFLPGSLVDIRPVKDTTPFEGKTMDFKVIKLDRKRNNVVLSHRAVIEESMGEE 1246
V T+ ++ + +IR + + T G ++D + D R N+ + + ++++
Sbjct: 558 VKTDKIRDVIGSGGKNIRGITEAT---GVSIDIE----DSGRINIASTSKEACDKAIKMI 610
Query: 1247 RQKLIETLKEGCTVKGVVKNITDYGAFIDL-GGIDGLLHITDIAWRRVKHPSEILTIGQD 1305
R E +EG G VK + D+GAF+++ G DGL+HI+++ RVK+ +++L G
Sbjct: 611 RDLTAEA-EEGKLYMGTVKKVMDFGAFVEIFPGTDGLVHISELDTERVKNVTDVLNEGDK 669
Query: 1306 ISTKILKYDQEKNRVSLGMKQ-LG 1328
+ K + D++ ++ L K+ LG
Sbjct: 670 VLVKCIGIDKQ-GKIKLSRKEALG 692
>UNIPROTKB|P05055 [details] [associations]
symbol:pnp "polynucleotide phosphorylase monomer"
species:83333 "Escherichia coli K-12" [GO:0006402 "mRNA catabolic
process" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0035438 "cyclic-di-GMP binding" evidence=IDA] [GO:0042802
"identical protein binding" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016020 "membrane" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=IEA;IDA]
[GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
evidence=IEA;IDA] HAMAP:MF_01595 InterPro:IPR003029
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR009019
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005829 GO:GO:0006950 GO:GO:0016020 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR EMBL:U18997
GO:GO:0003723 GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967 SMART:SM00316
SUPFAM:SSF54814 Pfam:PF03725 SUPFAM:SSF55666 EMBL:J02638
eggNOG:COG1185 HOGENOM:HOG000218327 KO:K00962 GO:GO:0004654
Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS BRENDA:2.7.7.8 ProtClustDB:PRK11824
EMBL:X00761 EMBL:M14425 PIR:H65106 RefSeq:NP_417633.4
RefSeq:YP_491351.1 PDB:1SRO PDB:3CDI PDB:3CDJ PDB:3H1C PDBsum:1SRO
PDBsum:3CDI PDBsum:3CDJ PDBsum:3H1C ProteinModelPortal:P05055
SMR:P05055 DIP:DIP-10522N IntAct:P05055 MINT:MINT-244786
PhosSite:P0810422 SWISS-2DPAGE:P05055 PaxDb:P05055 PRIDE:P05055
EnsemblBacteria:EBESCT00000001884 EnsemblBacteria:EBESCT00000002008
EnsemblBacteria:EBESCT00000002009 EnsemblBacteria:EBESCT00000002010
EnsemblBacteria:EBESCT00000015515 GeneID:12933437 GeneID:947672
KEGG:ecj:Y75_p3086 KEGG:eco:b3164 PATRIC:32121746 EchoBASE:EB0736
EcoGene:EG10743 BioCyc:EcoCyc:EG10743-MONOMER
BioCyc:ECOL316407:JW5851-MONOMER BioCyc:MetaCyc:EG10743-MONOMER
EvolutionaryTrace:P05055 Genevestigator:P05055 Uniprot:P05055
Length = 711
Score = 134 (52.2 bits), Expect = 0.00010, P = 0.00010
Identities = 27/80 (33%), Positives = 52/80 (65%)
Query: 1248 QKLIETLKEGCTVKGVVKNITDYGAFIDLGG-IDGLLHITDIAWRRVKHPSEILTIGQDI 1306
+++ ++ G G V I D+GAF+ +GG +GL+HI+ IA +RV+ ++ L +GQ++
Sbjct: 613 EEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEV 672
Query: 1307 STKILKYDQEKNRVSLGMKQ 1326
K+L+ D++ R+ L +K+
Sbjct: 673 PVKVLEVDRQ-GRIRLSIKE 691
>UNIPROTKB|F1N7K4 [details] [associations]
symbol:F1N7K4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR001878 InterPro:IPR003029
Pfam:PF00575 PROSITE:PS50126 PROSITE:PS50158 SMART:SM00343
GO:GO:0008270 GO:GO:0003723 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 EMBL:DAAA02041831
GeneTree:ENSGT00510000047363 IPI:IPI00908186
ProteinModelPortal:F1N7K4 Ensembl:ENSBTAT00000001878 OMA:YCKVIST
NextBio:20899911 Uniprot:F1N7K4
Length = 237
Score = 125 (49.1 bits), Expect = 0.00012, P = 0.00012
Identities = 33/88 (37%), Positives = 50/88 (56%)
Query: 1243 MGEERQKLIETLKEGCTV-KGVVKNITDYGAFIDLGGI--DGLLHITDIAWRRVKHPSEI 1299
M R + +E L T+ +G V +TDYGAFI + G GL+H T ++ RV PSEI
Sbjct: 1 MNSGRPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEI 60
Query: 1300 LTIGQDISTKILKYDQEKNR--VSLGMK 1325
+ +G + K++ + + +R VSL MK
Sbjct: 61 VDVGDKVCVKLIGREMKDDRIKVSLSMK 88
>UNIPROTKB|Q3T0H4 [details] [associations]
symbol:ZCCHC17 "Zinc finger, CCHC domain containing 17"
species:9913 "Bos taurus" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001878 InterPro:IPR003029 Pfam:PF00575 PROSITE:PS50126
PROSITE:PS50158 SMART:SM00343 GO:GO:0008270 GO:GO:0003723
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 CTD:51538 eggNOG:COG1185
HOGENOM:HOG000113809 HOVERGEN:HBG080343 OrthoDB:EOG4Z62PQ
OMA:MSASRVE EMBL:DAAA02006263 GeneTree:ENSGT00510000047363
EMBL:DAAA02006260 EMBL:DAAA02006261 EMBL:DAAA02006258
EMBL:DAAA02006259 EMBL:DAAA02006262 EMBL:BC102395 EMBL:BT025465
IPI:IPI00701421 RefSeq:NP_001029824.1 UniGene:Bt.2830 SMR:Q3T0H4
Ensembl:ENSBTAT00000022373 GeneID:538816 KEGG:bta:538816
InParanoid:Q3T0H4 NextBio:20877600 Uniprot:Q3T0H4
Length = 241
Score = 124 (48.7 bits), Expect = 0.00016, P = 0.00016
Identities = 33/88 (37%), Positives = 50/88 (56%)
Query: 1243 MGEERQKLIETLKEGCTV-KGVVKNITDYGAFIDLGGI--DGLLHITDIAWRRVKHPSEI 1299
M R + +E L T+ +G V +TDYGAFI + G GL+H T ++ RV PSEI
Sbjct: 1 MNSGRPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEI 60
Query: 1300 LTIGQDISTKILKYDQEKNR--VSLGMK 1325
+ +G + K++ + + +R VSL MK
Sbjct: 61 VDVGDKVWVKLIGREMKNDRIKVSLSMK 88
>UNIPROTKB|F6XYB1 [details] [associations]
symbol:ZCCHC17 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001878 InterPro:IPR003029 Pfam:PF00575 PROSITE:PS50126
PROSITE:PS50158 SMART:SM00343 GO:GO:0008270 GO:GO:0003723
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 CTD:51538 OMA:MSASRVE
Ensembl:ENSCAFT00000007577 EMBL:AAEX03001670
GeneTree:ENSGT00510000047363 RefSeq:XP_535332.2
ProteinModelPortal:F6XYB1 GeneID:478157 KEGG:cfa:478157
Uniprot:F6XYB1
Length = 241
Score = 124 (48.7 bits), Expect = 0.00016, P = 0.00016
Identities = 33/88 (37%), Positives = 50/88 (56%)
Query: 1243 MGEERQKLIETLKEGCTV-KGVVKNITDYGAFIDLGGI--DGLLHITDIAWRRVKHPSEI 1299
M R + +E L T+ +G V +TDYGAFI + G GL+H T ++ RV PSEI
Sbjct: 1 MNSGRPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEI 60
Query: 1300 LTIGQDISTKILKYDQEKNR--VSLGMK 1325
+ +G + K++ + + +R VSL MK
Sbjct: 61 VDVGDKVWVKLIGREMKNDRIKVSLSMK 88
>UNIPROTKB|Q9NP64 [details] [associations]
symbol:ZCCHC17 "Nucleolar protein of 40 kDa" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0022625 "cytosolic large
ribosomal subunit" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR001878 InterPro:IPR003029 Pfam:PF00575
PROSITE:PS50126 PROSITE:PS50158 SMART:SM00343 GO:GO:0005730
GO:GO:0046872 EMBL:CH471059 GO:GO:0008270 GO:GO:0003723
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 EMBL:AL451070 GO:GO:0022625
EMBL:AF247661 EMBL:AF151077 EMBL:AF151085 EMBL:AK001929
EMBL:AK022506 EMBL:AK024049 EMBL:BC000685 EMBL:BC007446
EMBL:BC050609 IPI:IPI00099810 IPI:IPI00383254 RefSeq:NP_057589.2
UniGene:Hs.524094 PDB:2CQO PDBsum:2CQO ProteinModelPortal:Q9NP64
SMR:Q9NP64 IntAct:Q9NP64 MINT:MINT-1447770 STRING:Q9NP64
PhosphoSite:Q9NP64 DMDM:73921227 PaxDb:Q9NP64 PRIDE:Q9NP64
DNASU:51538 Ensembl:ENST00000344147 Ensembl:ENST00000373714
GeneID:51538 KEGG:hsa:51538 UCSC:uc001bsp.1 CTD:51538
GeneCards:GC01P031769 HGNC:HGNC:30246 HPA:HPA028280
neXtProt:NX_Q9NP64 PharmGKB:PA142670539 eggNOG:COG1185
HOGENOM:HOG000113809 HOVERGEN:HBG080343 InParanoid:Q9NP64
OrthoDB:EOG4Z62PQ PhylomeDB:Q9NP64 ChiTaRS:ZCCHC17
EvolutionaryTrace:Q9NP64 GenomeRNAi:51538 NextBio:55305
ArrayExpress:Q9NP64 Bgee:Q9NP64 CleanEx:HS_ZCCHC17
Genevestigator:Q9NP64 GermOnline:ENSG00000121766 Uniprot:Q9NP64
Length = 241
Score = 124 (48.7 bits), Expect = 0.00016, P = 0.00016
Identities = 33/88 (37%), Positives = 50/88 (56%)
Query: 1243 MGEERQKLIETLKEGCTV-KGVVKNITDYGAFIDLGGI--DGLLHITDIAWRRVKHPSEI 1299
M R + +E L T+ +G V +TDYGAFI + G GL+H T ++ RV PSEI
Sbjct: 1 MNSGRPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEI 60
Query: 1300 LTIGQDISTKILKYDQEKNR--VSLGMK 1325
+ +G + K++ + + +R VSL MK
Sbjct: 61 VDVGDKVWVKLIGREMKNDRIKVSLSMK 88
>MGI|MGI:1919955 [details] [associations]
symbol:Zcchc17 "zinc finger, CCHC domain containing 17"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=TAS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0022625 "cytosolic
large ribosomal subunit" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR001878 InterPro:IPR003029
Pfam:PF00575 PROSITE:PS50126 PROSITE:PS50158 SMART:SM00343
MGI:MGI:1919955 GO:GO:0005730 GO:GO:0046872 GO:GO:0008270
GO:GO:0003723 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 GO:GO:0022625 CTD:51538
eggNOG:COG1185 HOGENOM:HOG000113809 HOVERGEN:HBG080343
ChiTaRS:ZCCHC17 EMBL:AJ272345 EMBL:AY253297 EMBL:BC018382
EMBL:BC049231 IPI:IPI00113633 IPI:IPI00648047 RefSeq:NP_694800.1
UniGene:Mm.297196 ProteinModelPortal:Q9ESX4 SMR:Q9ESX4 PRIDE:Q9ESX4
Ensembl:ENSMUST00000167964 GeneID:619605 KEGG:mmu:619605
InParanoid:Q9ESX4 OMA:MSASRVE NextBio:414767 Bgee:Q9ESX4
CleanEx:MM_ZCCHC17 Genevestigator:Q9ESX4
GermOnline:ENSMUSG00000028772 Uniprot:Q9ESX4
Length = 241
Score = 124 (48.7 bits), Expect = 0.00016, P = 0.00016
Identities = 33/88 (37%), Positives = 50/88 (56%)
Query: 1243 MGEERQKLIETLKEGCTV-KGVVKNITDYGAFIDLGGI--DGLLHITDIAWRRVKHPSEI 1299
M R + +E L T+ +G V +TDYGAFI + G GL+H T ++ RV PSEI
Sbjct: 1 MNSGRPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEI 60
Query: 1300 LTIGQDISTKILKYDQEKNR--VSLGMK 1325
+ +G + K++ + + +R VSL MK
Sbjct: 61 VDVGDKVWVKLIGREMKNDRIKVSLSMK 88
>RGD|1565267 [details] [associations]
symbol:Zcchc17 "zinc finger, CCHC domain containing 17"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0022625 "cytosolic large
ribosomal subunit" evidence=IEA;ISO] InterPro:IPR001878
InterPro:IPR003029 Pfam:PF00575 PROSITE:PS50126 PROSITE:PS50158
SMART:SM00343 RGD:1565267 GO:GO:0005730 GO:GO:0008270 GO:GO:0003723
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 EMBL:CH473968 GO:GO:0022625
CTD:51538 OrthoDB:EOG4Z62PQ OMA:MSASRVE
GeneTree:ENSGT00510000047363 IPI:IPI00190123 RefSeq:NP_001102737.1
UniGene:Rn.63831 Ensembl:ENSRNOT00000017156 GeneID:500555
KEGG:rno:500555 UCSC:RGD:1565267 NextBio:706546 Uniprot:D3ZCQ7
Length = 241
Score = 124 (48.7 bits), Expect = 0.00016, P = 0.00016
Identities = 33/88 (37%), Positives = 50/88 (56%)
Query: 1243 MGEERQKLIETLKEGCTV-KGVVKNITDYGAFIDLGGI--DGLLHITDIAWRRVKHPSEI 1299
M R + +E L T+ +G V +TDYGAFI + G GL+H T ++ RV PSEI
Sbjct: 1 MNSGRPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEI 60
Query: 1300 LTIGQDISTKILKYDQEKNR--VSLGMK 1325
+ +G + K++ + + +R VSL MK
Sbjct: 61 VDVGDKVWVKLIGREMKNDRIKVSLSMK 88
>UNIPROTKB|E2R379 [details] [associations]
symbol:E2R379 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001878
InterPro:IPR003029 Pfam:PF00575 PROSITE:PS50126 PROSITE:PS50158
SMART:SM00343 GO:GO:0008270 GO:GO:0003723 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 Gene3D:4.10.60.10
InterPro:IPR022967 SMART:SM00316 Ensembl:ENSCAFT00000007577
Uniprot:E2R379
Length = 244
Score = 124 (48.7 bits), Expect = 0.00017, P = 0.00017
Identities = 33/88 (37%), Positives = 50/88 (56%)
Query: 1243 MGEERQKLIETLKEGCTV-KGVVKNITDYGAFIDLGGI--DGLLHITDIAWRRVKHPSEI 1299
M R + +E L T+ +G V +TDYGAFI + G GL+H T ++ RV PSEI
Sbjct: 1 MNSGRPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEI 60
Query: 1300 LTIGQDISTKILKYDQEKNR--VSLGMK 1325
+ +G + K++ + + +R VSL MK
Sbjct: 61 VDVGDKVWVKLIGREMKNDRIKVSLSMK 88
>TIGR_CMR|CPS_4965 [details] [associations]
symbol:CPS_4965 "putative transcription accessory protein"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003723 "RNA
binding" evidence=ISS] InterPro:IPR003029 InterPro:IPR003583
InterPro:IPR006641 Pfam:PF00575 PROSITE:PS50126 SMART:SM00278
SMART:SM00732 GO:GO:0003677 GO:GO:0006281 GO:GO:0003723
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016788
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 Gene3D:3.30.420.140 eggNOG:COG2183
Gene3D:1.10.150.310 Gene3D:1.10.3500.10 InterPro:IPR023323
InterPro:IPR023097 InterPro:IPR018974 Pfam:PF09371 OMA:YKQKRRT
Gene3D:1.10.10.650 InterPro:IPR023319 HOGENOM:HOG000270497
KO:K06959 RefSeq:YP_271604.1 ProteinModelPortal:Q47UB9 SMR:Q47UB9
STRING:Q47UB9 GeneID:3522134 KEGG:cps:CPS_4965 PATRIC:21472723
BioCyc:CPSY167879:GI48-4966-MONOMER Uniprot:Q47UB9
Length = 796
Score = 142 (55.0 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 27/73 (36%), Positives = 47/73 (64%)
Query: 1254 LKEGCTVKGVVKNITDYGAFIDLG-GIDGLLHITDIAWRRVKHPSEILTIGQDISTKILK 1312
L G ++GVV N+ ++GAF+D+G DGL+HI+ I + + P EI+ G+ + K+++
Sbjct: 655 LTPGMILEGVVSNVANFGAFVDIGVHQDGLVHISSITEKFISDPREIVKAGEVVKVKVVE 714
Query: 1313 YDQEKNRVSLGMK 1325
D + R+SL M+
Sbjct: 715 VDIARKRISLTMR 727
Score = 42 (19.8 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 202 ECSINDLIKII------PAPDFPTAGIIYGLSSVHD 231
E +I D+IK + P P F TA G++++ D
Sbjct: 619 EITIKDIIKELAKPSRDPRPAFKTASFAEGVNTMAD 654
Score = 39 (18.8 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 434 ISKI-NNISKLQNNDMYKLSDIQAQEI 459
+SK+ NN +LQ+ D+ + +D EI
Sbjct: 594 VSKVLNNNEQLQSLDITQFTDNDIGEI 620
Score = 38 (18.4 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 20/84 (23%), Positives = 40/84 (47%)
Query: 707 SDSGKAVRF-NENS----VRAMGRSARGVIGMRLEKKQKVIALLVSNNQKQSVLTAT-EN 760
S + +AV F NE + V+A+ A ++ R + ++A L S+ KQ+ L +
Sbjct: 135 SPTTEAVAFINETAGFSDVKAVLEGASYILAERFSEDANLLAKLRSHLLKQAHLASKLVK 194
Query: 761 GYGKR-TLIKEYTKHNRGTKGIIS 783
G + ++Y +H+ + + S
Sbjct: 195 GQERAGAKFRDYFEHSEKLRTVPS 218
>DICTYBASE|DDB_G0286941 [details] [associations]
symbol:DDB_G0286941 species:44689 "Dictyostelium
discoideum" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003029 Pfam:PF00575 PROSITE:PS50126
dictyBase:DDB_G0286941 GO:GO:0003723 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AAFI02000092
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539 RefSeq:XP_637477.1
ProteinModelPortal:Q54L26 EnsemblProtists:DDB0187202 GeneID:8625876
KEGG:ddi:DDB_G0286941 InParanoid:Q54L26 OMA:IEPLEMI Uniprot:Q54L26
Length = 804
Score = 105 (42.0 bits), Expect = 0.00024, Sum P(3) = 0.00024
Identities = 46/205 (22%), Positives = 85/205 (41%)
Query: 1359 VEIEKGIEGLVHISEMDWINKNVT-PSKIVQLNDTVEIMILEINEERRRISLGMKQC--- 1414
VE+ I G+V M + N+T P + ++ TV++ I+ + +++R+ L +K+
Sbjct: 577 VELATSIHGVVARHHM--ADTNITDPLEFFKVGATVKVRIINVEPDKKRLQLTLKKSLIY 634
Query: 1415 KDNPWENFXXXXXXXXXXXXXXXXXTDFGIFIGLDGNIDGLIHLSDLSWTDPGEEIIRNF 1474
+ P T F +F+ N G++ +LS E + + F
Sbjct: 635 SEYPIITDKNTTPIGTISHGIITKTTRFLVFVSFYNNSFGVVEAQNLS-NSKIESVQKQF 693
Query: 1475 KKGDEIEAIILSIDVEKERISLGIKQ-LEGDPFNNYV--NINDKGSLVNGIIKSIDTNKG 1531
G + A L + K + L + ++ D FN+ N N K + N ++
Sbjct: 694 PVGRTVLAKTLFSESSKSQPGLPLTLVIDDDDFNSQPQPNSNKKSNNSNNKKENKKVENK 753
Query: 1532 AIIQLSNEVEGYLRISEEDNKHEKK 1556
+ + E EG E++NK EKK
Sbjct: 754 KVEEEKVEEEGKEE-EEKENKEEKK 777
Score = 77 (32.2 bits), Expect = 0.00024, Sum P(3) = 0.00024
Identities = 35/138 (25%), Positives = 60/138 (43%)
Query: 1214 GKTMDFKVIKLDR--KRNNVVLSHRAVIEESMGEERQKLIETLKEGCTVKGVVKNITDYG 1271
G+ ++ + +D+ K + +SH V ++ +E++K G V+ V + G
Sbjct: 329 GQPIESLIQSIDKSTKTFKLTISHPLVSRSTIKNSETITMESIKAGMLVETKVLRVLSNG 388
Query: 1272 AFIDLGGIDGLLHITDIAWRRVKHPSEILTIGQDISTKILKYDQEKNRVSLGMKQLGIDP 1331
+ LG +D DI ++P E Q + +IL DQ R+ G+ LG
Sbjct: 389 --LHLGFLD--FFAGDIFILHSQNPIETYKENQGVKARILFVDQVHKRI--GLSTLGHV- 441
Query: 1332 WIGLSFR-YPRGTRLLGK 1348
L F+ YP GT G+
Sbjct: 442 ---LGFKPYPFGTTKPGQ 456
Score = 49 (22.3 bits), Expect = 0.00024, Sum P(3) = 0.00024
Identities = 24/92 (26%), Positives = 37/92 (40%)
Query: 378 HILEGLTIALTNIDNFIQIIRSTSTPQEAK--NKIIESTWNLPDVSKIIGFNKKNYNTIS 435
H +EGL L + + S T E + IES + D I+ F K+YN
Sbjct: 252 HTIEGLHCTLR--PELVNVGSSIDTFSEDMTIHGCIES---IQDKGYIVSFGSKDYNGFL 306
Query: 436 KINNISKLQNNDMYKLSDIQAQEILKMPLQRL 467
+ +N + SD Q Q + P++ L
Sbjct: 307 EFSNTCYYYPDQS---SDDQNQLYIGQPIESL 335
>TIGR_CMR|SO_1209 [details] [associations]
symbol:SO_1209 "polyribonucleotide nucleotidyltransferase"
species:211586 "Shewanella oneidensis MR-1" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0004654 "polyribonucleotide
nucleotidyltransferase activity" evidence=ISS] [GO:0006402 "mRNA
catabolic process" evidence=ISS] HAMAP:MF_01595 InterPro:IPR003029
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR009019
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 GO:GO:0003723 GO:GO:0006396 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0006402 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967 SMART:SM00316
HSSP:P05055 SUPFAM:SSF54814 Pfam:PF03725 SUPFAM:SSF55666
eggNOG:COG1185 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591
HOGENOM:HOG000218326 ProtClustDB:PRK11824 RefSeq:NP_716833.2
ProteinModelPortal:Q8EHL1 SMR:Q8EHL1 GeneID:1169037
KEGG:son:SO_1209 PATRIC:23522076 Uniprot:Q8EHL1
Length = 699
Score = 127 (49.8 bits), Expect = 0.00057, P = 0.00057
Identities = 33/96 (34%), Positives = 56/96 (58%)
Query: 1239 IEESMGEERQKLIETLKE-------GCTVKGVVKNITDYGAFID-LGGIDGLLHITDIAW 1290
I S GE ++ I ++E G G V I D+GAF++ L G DGL+HI+ I+
Sbjct: 596 IASSNGEATKEAIRRIEEITSEVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISD 655
Query: 1291 RRVKHPSEILTIGQDISTKILKYDQEKNRVSLGMKQ 1326
RV + S+ L + Q+++ K+++ D++ RV L +K+
Sbjct: 656 ERVANVSDHLELNQEVTVKVMEVDRQ-GRVRLSIKE 690
>MGI|MGI:1341788 [details] [associations]
symbol:Pdcd11 "programmed cell death 11" species:10090 "Mus
musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0008134
"transcription factor binding" evidence=ISO] [GO:0043123 "positive
regulation of I-kappaB kinase/NF-kappaB cascade" evidence=TAS]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 SMART:SM00386 MGI:MGI:1341788 GO:GO:0005829
GO:GO:0006915 GO:GO:0005730 GO:GO:0006355 GO:GO:0043123
GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006364 InterPro:IPR022967
SMART:SM00316 CTD:22984 eggNOG:COG0539 HOVERGEN:HBG108419 KO:K14792
OMA:LHLADIY OrthoDB:EOG4XKV63 EMBL:AK129080 EMBL:BC038503
EMBL:BC055276 EMBL:BC070468 EMBL:AK003899 EMBL:AK141450
EMBL:AK147950 EMBL:AK161803 EMBL:AF055668 EMBL:AF055669
IPI:IPI00551454 RefSeq:NP_035183.2 UniGene:Mm.41166 HSSP:Q14690
ProteinModelPortal:Q6NS46 SMR:Q6NS46 STRING:Q6NS46
PhosphoSite:Q6NS46 PaxDb:Q6NS46 PRIDE:Q6NS46 DNASU:18572
Ensembl:ENSMUST00000072141 GeneID:18572 KEGG:mmu:18572
UCSC:uc008hup.1 GeneTree:ENSGT00390000012228 InParanoid:Q9CTD8
NextBio:294412 Bgee:Q6NS46 Genevestigator:Q6NS46 Uniprot:Q6NS46
Length = 1862
Score = 136 (52.9 bits), Expect = 0.00084, Sum P(2) = 0.00084
Identities = 50/184 (27%), Positives = 85/184 (46%)
Query: 1150 SRDKAKRLASWLSLEKAMESGEIITGTINGKVKGGLTV--LTNGLKAFLPGS-LVDIR-- 1204
SR K + S A+ G+++ + K K GL V L + AFLP L D
Sbjct: 616 SRPKDPGVESSQKKTGAVRIGQLVDVKVLEKTKTGLEVAILPHNTPAFLPTPHLSDHAAN 675
Query: 1205 -PVKDTTPFEGKTMDFKVIKLDRKRNNVVLSHR-AVIEESMGEERQKLIETLKEGCTVKG 1262
P+ G T+ +V+ L + +++L + A++ G + K + ++ G + G
Sbjct: 676 GPLLHHWLQTGDTLH-RVLCLSQSERHILLCRKPALVSTVEGGQDPKSLSEIQPGMLLIG 734
Query: 1263 VVKNITDYGAFIDL-GGIDGLLHITDIAWRRVKHPSEILTIGQDISTKILKYDQEKNRVS 1321
VK I +YG F+ G+ GL T ++ + V PSE GQ + K+ D+ K R+
Sbjct: 735 FVKCIKEYGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEGQTVVAKVTNVDESKQRML 794
Query: 1322 LGMK 1325
L ++
Sbjct: 795 LSLR 798
Score = 135 (52.6 bits), Expect = 0.00094, Sum P(3) = 0.00094
Identities = 56/248 (22%), Positives = 108/248 (43%)
Query: 1180 KVKGGLTVLTNGLKAFLPGS-LVDIRPVKDTTPFE-GKTMDFKVIKLDRKRNNVVLSHRA 1237
K G + L +G+ A+ S L D + + F+ G T ++I + +LS R
Sbjct: 378 KNAGAIFRLKDGVLAYARVSHLSDSKKAFNAEAFKPGSTHKCRIIDYSQMDELALLSLR- 436
Query: 1238 VIEESMGEERQKLIETLKEGCTVKGVVKNITDYGAFIDLGG-IDGL---LHITDIAWRRV 1293
+S+ +K G VKG V I +G + +G I GL +H+ DI +
Sbjct: 437 ---KSIIAAPFLRYHDIKIGTVVKGTVLAIKPFGILVKVGEQIKGLVPSMHLADIM---M 490
Query: 1294 KHPSEILTIGQDISTKILKYDQEKNRVSLGMKQLGIDPWIGLSFRYPR---GTRLLGKVT 1350
K+P + + G ++ ++L D E ++ + +K+ + + L Y G + G +
Sbjct: 491 KNPEKKYSPGDEVKCRVLLCDPEAKKLIMTLKKTLVTSKLSLITCYEGAKPGLQTHGVII 550
Query: 1351 NLTDYGAFVEIEKGIEGLVHISEMDWINKNVT-PSKIVQLNDTVEIMILEINEERRRISL 1409
+ DYG V+ ++GLV E+ +++ P + V++ +L + R+ L
Sbjct: 551 RVKDYGCIVKFYNDVQGLVPKHELS--TQHIPDPETVFYTGQVVKVAVLSCEPSKERMLL 608
Query: 1410 GMKQCKDN 1417
+ D+
Sbjct: 609 SFRLLSDS 616
Score = 63 (27.2 bits), Expect = 0.00094, Sum P(3) = 0.00094
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 1441 DFGIFIGLDGNIDGLIH---LSDLSWTDPGEEIIRNFKKGDEIEAIILSIDVEKERISLG 1497
++G+F+ + GL +SD T P E +F +G + A + ++D K+R+ L
Sbjct: 741 EYGVFVQFPSGLSGLSPKTIMSDKFVTTPSE----HFVEGQTVVAKVTNVDESKQRMLLS 796
Query: 1498 IK 1499
++
Sbjct: 797 LR 798
Score = 50 (22.7 bits), Expect = 0.00084, Sum P(2) = 0.00084
Identities = 18/68 (26%), Positives = 29/68 (42%)
Query: 1484 ILSIDVEKERISLGIKQLEGDPFNNYVNINDKGSLVNGIIKSIDTNKGAIIQLSNEVEG- 1542
+L++ + R + K DP N + +G L+ G +K + II L V G
Sbjct: 1303 VLALSLRSSRTNRETKNRIEDPEINSIEDVKEGQLLRGYVKCV-LPSSVIIGLGPSVLGL 1361
Query: 1543 --YLRISE 1548
Y +SE
Sbjct: 1362 AKYSHVSE 1369
Score = 38 (18.4 bits), Expect = 0.00094, Sum P(3) = 0.00094
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 1552 KH-EKKLKIGENIDVLTVLIDHKTRYIQLS 1580
KH +KK ++G+ I+ V D ++ LS
Sbjct: 1202 KHPDKKFQVGQAIEATVVDPDVPRAFLCLS 1231
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.137 0.385 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1619 1580 0.00081 125 3 11 22 0.40 34
40 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 183
No. of states in DFA: 631 (67 KB)
Total size of DFA: 569 KB (2257 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 150.67u 0.11s 150.78t Elapsed: 00:02:48
Total cpu time: 150.77u 0.11s 150.88t Elapsed: 00:02:49
Start: Thu Aug 15 13:12:06 2013 End: Thu Aug 15 13:14:55 2013
WARNINGS ISSUED: 1