RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14505
(1619 letters)
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Length = 493
Score = 541 bits (1395), Expect = e-178
Identities = 277/497 (55%), Positives = 376/497 (75%), Gaps = 5/497 (1%)
Query: 30 VGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGETMGKYHPHGDVSIYDAL 89
VGRALPDVRDGLKPVHRRVL+AM+ + N WN+ + K ARVVG+ +GKYHPHGD ++YD +
Sbjct: 1 VGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTI 60
Query: 90 VRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTECRLNKISNELLIDLDKETIDFISNY 149
VRMAQ FSLR LVDGQGNFGSIDGDSAAAMRYTE RL KI++EL+ DL+KET+DF+ NY
Sbjct: 61 VRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNY 120
Query: 150 DGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGVLYVLHNPECSINDLI 209
DG EK P V+PT+IPNLL+NGSSGIAVGMATNIPPHNLTEVI+G L + + + SI L+
Sbjct: 121 DGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLM 180
Query: 210 KIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRAKTHIEEFNRENRTAIIIDELPYQVN 269
+ IP PDFPTA II G + + Y TG+G+V IRA+ +E + R II+ E+PYQVN
Sbjct: 181 EHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVN 240
Query: 270 KKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVIELKRNEIPEIVLNKLYKQTQLQNT 329
K L+EKI++LVKEK++E IS LRDESDK GMRIVIE+KR+ + E+VLN LY QTQLQ +
Sbjct: 241 KARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVS 300
Query: 330 FGMNMLALVNGQPKLLNLKEILYYFILHRKEVIKRRTIFELRKAREYAHILEGLTIALTN 389
FG+NM+AL +GQPK++NLK+I+ F+ HR+EV+ RRTIFELRKAR+ AHILE L +AL N
Sbjct: 301 FGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALAN 360
Query: 390 IDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIGFNKKNYNTISKINNISKLQNNDMY 449
ID I++IR TP EAK ++ + W L +V+ ++ + + ++ + +Y
Sbjct: 361 IDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVR-DGLY 419
Query: 450 KLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVIDLTDILSNSKRIIEIITDELNI 509
L++ QAQ IL + LQ+LT +E +K++++Y+ ++ ++ +L IL ++ R++E+I +EL +
Sbjct: 420 YLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELEL 479
Query: 510 IKNKYGSHKKNIRRSEI 526
++ ++G RR+EI
Sbjct: 480 VREQFGDK----RRTEI 492
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 258 bits (661), Expect = 4e-73
Identities = 97/541 (17%), Positives = 201/541 (37%), Gaps = 51/541 (9%)
Query: 1 MNQFAKEVISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWN 60
+ I + + + K + ++++ + R++P+V DG KP R+VL+ + N
Sbjct: 242 GTVLDPTLKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNLKSE 300
Query: 61 RPFVKCARVVGETMGKYHPHGDVSIYDALVRMAQSFSLRC----TLVDGQGNFGSIDGDS 116
+ A V E +H S+ ++ +AQ+F L +G + G
Sbjct: 301 LKVAQLAPYVSECTAYHHGEQ--SLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKD 358
Query: 117 AAAMRYTECRLNKISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAV 176
AAA RY LNK++ ++ D +I D K EP +P +L+NG+ GI
Sbjct: 359 AAAARYIYTELNKLTRKIFHPADDPLYKYIQE-DEKTVEPEWYLPILPMILVNGAEGIGT 417
Query: 177 GMATNIPPHNLTEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTG 236
G +T IPP N E+I + +++++ E L ++ P T
Sbjct: 418 GWSTYIPPFNPLEIIKNIRHLMNDEE-----LEQMHPWFRGWT----------GTIEEIE 462
Query: 237 KGRVIIRAKTHIEEFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLEC-ISNLRDE 295
R + + N + I ELP + ++ E + + +E
Sbjct: 463 PLRYRMYGRIEQIGDNV-----LEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEE 517
Query: 296 SDKSGMRIVIELKRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKL---LNLKEILY 352
++ +I L E+ + Y++ +L + + + + K+ ++ EIL
Sbjct: 518 QHDDNIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEILS 577
Query: 353 YFILHR-------KEVIKRRTIFELRKAREYAHILEG-----LTIALTNIDNFIQIIRST 400
F R K+ + R +E+ K ++ LT+ + IQ + +
Sbjct: 578 EFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENL 637
Query: 401 STPQEAKNKIIESTWNLPDVSKIIGFNKKNYNTISKINNISKLQNNDM--YKLSDIQAQE 458
P+ K ++++ I K + + + N + + +
Sbjct: 638 GFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTYEY 697
Query: 459 ILKMPLQRLTNMEQKKIINKYENVIKKVIDLTDILSNSKRIIEIITDELNIIKNKYGSHK 518
+L M + LT +K++ + + ++ +L + +I +L + Y
Sbjct: 698 LLGMRIWSLTKERYQKLLKQKQEKETELENLLKLS-----AKDIWNTDLKAFEVGYQEFL 752
Query: 519 K 519
+
Sbjct: 753 Q 753
>d1suua_ b.68.10.1 (A:) DNA gyrase A C-terminal domain {Lyme disease
spirochete (Borrelia burgdorferi) [TaxId: 139]}
Length = 304
Score = 219 bits (559), Expect = 1e-64
Identities = 86/298 (28%), Positives = 159/298 (53%), Gaps = 6/298 (2%)
Query: 543 DMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYG 602
++V+ L+ G++K +EY+ Q GG+G + D D I NTHDY+ SN G
Sbjct: 2 NIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEG 61
Query: 603 RLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLG 662
+LY + ++I SR S+G+ I + +L ++E+I I N +D + Y+ ++T+ G
Sbjct: 62 KLYLINAYEIKDSSRASKGQNISELINLGDQEEILTI----KNSKDLTDDAYLLLTTASG 117
Query: 663 IVKKTLLSNFSNPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRA 722
+ + ++F + G+I + L+++DF+ A + ++ S G A FN VR
Sbjct: 118 KIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRL 177
Query: 723 MGRSARGVIGMRLEKKQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKGII 782
R +GV GM+ K+ + ++S + +L +ENGYGKR + + ++ RG G
Sbjct: 178 TNRGTQGVCGMK-LKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATGYT 236
Query: 783 SIK-TNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILITVEN 839
S K ++K+ G VV A V+ EI+L++ +RT ++ + G+ +G+ ++ ++N
Sbjct: 237 SYKKSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVAGKVSEQGKDARGIQVLFLDN 294
>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal
domain {Bacillus stearothermophilus [TaxId: 1422]}
Length = 323
Score = 197 bits (501), Expect = 2e-56
Identities = 80/314 (25%), Positives = 150/314 (47%), Gaps = 11/314 (3%)
Query: 538 LIASQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILC 597
++AS+D+++T++ GY+K + Y A KD D + + NT D +L
Sbjct: 1 MVASEDVIVTVTKDGYVKRTSLRSYAASNGQDFA-----MKDTDRLLAMLEMNTKDVLLL 55
Query: 598 FSNYGRLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFM 657
F+N G + V ++P G+ I N+ + E+I DF N Y
Sbjct: 56 FTNKGNYLYCPVHELPDIRWKDLGQHIANIIPIDRDEEIIKA----IPINDFELNGYFLF 111
Query: 658 STSLGIVKKTLLSNFSNP-RKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFN 716
T G+VKKT L ++ + +NL N+D ++ LTDG ++ L + +G A+ F+
Sbjct: 112 VTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFD 171
Query: 717 ENSVRAMGRSARGVIGMRLEKKQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNR 776
E+ V +G A GV GM L++ +++ + ++ +S++ AT+ G K+ + E+ K R
Sbjct: 172 ESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATR 231
Query: 777 GTKGIISIKTNKRNGKVVAATLV-NRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILI 835
+G++ ++ K N ++ +V I L T + +V +IR R + G ++
Sbjct: 232 AKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGDIRFSDRYSNGSFVL 291
Query: 836 TVENKSKLCGVQRL 849
E ++ V ++
Sbjct: 292 DEEENGRVISVWKV 305
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId:
1313]}
Length = 223
Score = 145 bits (366), Expect = 9e-40
Identities = 81/213 (38%), Positives = 120/213 (56%), Gaps = 5/213 (2%)
Query: 861 VITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDN-----ELELV 915
I IDGP +SGK TVA+++A GF YLD+GA+YR T A+ N + ++ L
Sbjct: 5 QIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLGVEEVEALLALLDQ 64
Query: 916 ILIKKLNYNFLGKEVYLNGVNVTTLIRNEKVSNNASKIAKFKNIRKELFKIQVKFRKFPG 975
I + V++ V++T IR +V+N+ S IA +R++L +Q + + G
Sbjct: 65 HPISFGRSETGDQLVFVGDVDITHPIRENEVTNHVSAIAAIPEVREKLVSLQQEIAQQGG 124
Query: 976 LVADGRDMGTTVFPDAFLKIFLTADIKQRTKRRYKQLMQKGFSVSMSDLLINLIKRDIRD 1035
+V DGRD+GT V P A LKIFL A + +R +RRYK+ + KG + L + RD +D
Sbjct: 125 IVMDGRDIGTVVLPQAELKIFLVASVDERAERRYKENIAKGIETDLETLKKEIAARDYKD 184
Query: 1036 KTRNLSPLKCPEQAHLLNTSKMNINQVVNQILD 1068
R SPLK E A L+T+ +NI +VV +I
Sbjct: 185 SHRETSPLKQAEDAVYLDTTGLNIQEVVEKIKA 217
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 133 bits (334), Expect = 2e-35
Identities = 94/214 (43%), Positives = 142/214 (66%), Gaps = 4/214 (1%)
Query: 859 IPVITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELELVILI 918
PVITIDGP+ +GKGT+ + +A L +H LDSGA+YR++ L+A+++++ + +E LV L
Sbjct: 3 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLA 62
Query: 919 KKLNYNFL----GKEVYLNGVNVTTLIRNEKVSNNASKIAKFKNIRKELFKIQVKFRKFP 974
L+ F+ EV L G +V+ IR ++V+N AS++A F +R+ L + Q FR+ P
Sbjct: 63 SHLDVRFVSTNGNLEVILEGEDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELP 122
Query: 975 GLVADGRDMGTTVFPDAFLKIFLTADIKQRTKRRYKQLMQKGFSVSMSDLLINLIKRDIR 1034
GL+ADGRDMGT VFPDA +KIFL A ++R RR QL KGFSV+ LL + +RD R
Sbjct: 123 GLIADGRDMGTVVFPDAPVKIFLDASSEERAHRRMLQLQVKGFSVNFERLLAEIKERDDR 182
Query: 1035 DKTRNLSPLKCPEQAHLLNTSKMNINQVVNQILD 1068
D+ R ++PL A +L+++ ++I QV+ + L
Sbjct: 183 DRNRAVAPLVPAADALVLDSTTLSIEQVIEKALQ 216
>d1x75a1 e.11.1.1 (A:363-494) DNA Gyrase A {Escherichia coli [TaxId:
562]}
Length = 132
Score = 111 bits (278), Expect = 4e-29
Identities = 50/132 (37%), Positives = 83/132 (62%), Gaps = 1/132 (0%)
Query: 364 RRTIFELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKI 423
RRTIFELRKAR+ AHILE L +AL NID I++IR TP EAK ++ + W L +V+ +
Sbjct: 2 RRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAM 61
Query: 424 IGFNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVI 483
+ + + + + +Y L++ QAQ IL + LQ+LT +E +K++++Y+ ++
Sbjct: 62 LERAGDDAARPEWLEPEFGV-RDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELL 120
Query: 484 KKVIDLTDILSN 495
++ +L IL +
Sbjct: 121 DQIAELLRILGS 132
>d3bzka4 b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 94
Score = 81.1 bits (200), Expect = 7e-19
Identities = 31/84 (36%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 1245 EERQKLIETLKEGCTVKGVVKNITDYGAFIDLG-GIDGLLHITDIAWRRVKHPSEILTIG 1303
+E + ++ LK G ++GVV N+T++GAF+D+G DGL+HI+ ++ + VK P E++ G
Sbjct: 7 QEGVESLKDLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAG 66
Query: 1304 QDISTKILKYDQEKNRVSLGMKQL 1327
+ K+++ D +NRV L M+
Sbjct: 67 DIVKVKVMEVDIPRNRVGLSMRMS 90
Score = 74.5 bits (183), Expect = 1e-16
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 1342 GTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEMDWINKNVTPSKIVQLNDTVEIMILEIN 1401
G L G VTN+T++GAFV+I +GLVHIS + P ++V+ D V++ ++E++
Sbjct: 19 GMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVK-DPYEVVKAGDIVKVKVMEVD 77
Query: 1402 EERRRISLGMKQCKDNP 1418
R R+ L M+ D P
Sbjct: 78 IPRNRVGLSMRM-SDTP 93
Score = 74.5 bits (183), Expect = 1e-16
Identities = 20/76 (26%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 1427 KKGEKIKGIIKSITDFGIFIGLDGNIDGLIHLSDLSWTDPGEEIIRNFKKGDEIEAIILS 1486
K G ++G++ ++T+FG F+ + + DGL+H+S LS ++ K GD ++ ++
Sbjct: 17 KPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFV-KDPYEVVKAGDIVKVKVME 75
Query: 1487 IDVEKERISLGIKQLE 1502
+D+ + R+ L ++ +
Sbjct: 76 VDIPRNRVGLSMRMSD 91
Score = 39.5 bits (92), Expect = 3e-04
Identities = 16/75 (21%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 1515 KGSLVNGIIKSIDTNKGAIIQLSNEVEGYLRISEEDNKHE----KKLKIGENIDVLTVLI 1570
G ++ G++ ++ TN GA + + +G + IS K + +K G+ + V + +
Sbjct: 18 PGMVLEGVVTNV-TNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEV 76
Query: 1571 DHKTRYIQLSFKKKE 1585
D + LS + +
Sbjct: 77 DIPRNRVGLSMRMSD 91
Score = 32.9 bits (75), Expect = 0.048
Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 13/88 (14%)
Query: 1162 SLEKAMES------GEIITGTINGKVKGGLTV-LTNGLKAFLPGSLVDIRPVKDTTPFEG 1214
++ +ES G ++ G + G V + + + + P+E
Sbjct: 5 EFQEGVESLKDLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVH--ISALSEKFVKDPYEV 62
Query: 1215 KTM----DFKVIKLDRKRNNVVLSHRAV 1238
KV+++D RN V LS R
Sbjct: 63 VKAGDIVKVKVMEVDIPRNRVGLSMRMS 90
>d1sroa_ b.40.4.5 (A:) S1 RNA-binding domain of polyribonucleotide
phosphorylase, PNPase {Escherichia coli [TaxId: 562]}
Length = 76
Score = 79.4 bits (196), Expect = 1e-18
Identities = 27/74 (36%), Positives = 48/74 (64%), Gaps = 2/74 (2%)
Query: 1254 LKEGCTVKGVVKNITDYGAFIDLG-GIDGLLHITDIAWRRVKHPSEILTIGQDISTKILK 1312
++ G G V I D+GAF+ +G G +GL+HI+ IA +RV+ ++ L +GQ++ K+L+
Sbjct: 3 IEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLE 62
Query: 1313 YDQEKNRVSLGMKQ 1326
D + R+ L +K+
Sbjct: 63 VD-RQGRIRLSIKE 75
Score = 71.7 bits (176), Expect = 6e-16
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 1342 GTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEMDWINKNVTPSKIVQLNDTVEIMILEIN 1401
G GKVT + D+GAFV I G EGLVHIS++ + + +Q+ V + +LE++
Sbjct: 6 GRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVD 64
Query: 1402 EERRRISLGMKQ 1413
+ RI L +K+
Sbjct: 65 RQ-GRIRLSIKE 75
Score = 71.7 bits (176), Expect = 7e-16
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 1427 KKGEKIKGIIKSITDFGIFIGLDGNIDGLIHLSDLSWTDPGEEIIRNFKKGDEIEAIILS 1486
+ G G + I DFG F+ + G +GL+H+S ++ E++ + G E+ +L
Sbjct: 4 EVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLE 62
Query: 1487 IDVEKERISLGIKQ 1500
+D + RI L IK+
Sbjct: 63 VD-RQGRIRLSIKE 75
Score = 37.8 bits (88), Expect = 5e-04
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 1516 GSLVNGIIKSIDTNKGAIIQLSNEVEGYLRISEEDNKH----EKKLKIGENIDVLTVLID 1571
G + G + I + GA + + EG + IS+ +K L++G+ + V + +D
Sbjct: 6 GRVYTGKVTRI-VDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD 64
Query: 1572 HKTRYIQLSFKK 1583
+ R I+LS K+
Sbjct: 65 RQGR-IRLSIKE 75
Score = 28.2 bits (63), Expect = 1.7
Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 1167 MESGEIITGTINGKVKGGLTVLT-NGLKAFLPGSLVDIRPVKDTTPF--EGKTMDFKVIK 1223
+E G + TG + V G V G + + S + + V+ T + G+ + KV++
Sbjct: 3 IEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLE 62
Query: 1224 LDRKRNNVVLSHR 1236
+D ++ + LS +
Sbjct: 63 VD-RQGRIRLSIK 74
>d1e3pa2 b.40.4.5 (A:656-717) S1 RNA-binding domain of
polyribonucleotide phosphorylase, PNPase {Streptomyces
antibioticus [TaxId: 1890]}
Length = 62
Score = 73.2 bits (180), Expect = 1e-16
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 1347 GKVTNLTDYGAFVEIEKGIEGLVHISEMDWINKN---VTPSKIVQLNDTVEIMILEINEE 1403
G V T +GAFV + G +GL+HIS++ + ++ + V++ I EI+
Sbjct: 1 GSVVKTTTFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSR 60
Query: 1404 RR 1405
+
Sbjct: 61 GK 62
Score = 67.8 bits (166), Expect = 1e-14
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 1262 GVVKNITDYGAFIDL-GGIDGLLHITDI----AWRRVKHPSEILTIGQDISTKILKYDQE 1316
G V T +GAF+ L G DGLLHI+ I +RV++ ++L +GQ + +I + D
Sbjct: 1 GSVVKTTTFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSR 60
Query: 1317 K 1317
Sbjct: 61 G 61
Score = 64.4 bits (157), Expect = 2e-13
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 1434 GIIKSITDFGIFIGLDGNIDGLIHLSDLSWTDPGEEIIR---NFKKGDEIEAIILSIDVE 1490
G + T FG F+ L DGL+H+S + G+ + G +++ I ID
Sbjct: 1 GSVVKTTTFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSR 60
Query: 1491 K 1491
Sbjct: 61 G 61
Score = 35.8 bits (83), Expect = 0.002
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 9/63 (14%)
Query: 1521 GIIKSIDTNKGAIIQLSNEVEGYLRISEED--------NKHEKKLKIGENIDVLTVLIDH 1572
G + T GA + L +G L IS+ E L +G+ + V ID
Sbjct: 1 GSVVKT-TTFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDS 59
Query: 1573 KTR 1575
+ +
Sbjct: 60 RGK 62
>d1go3e1 b.40.4.5 (E:79-184) C-terminal domain of RNA polymerase II
subunit RBP7 (RpoE) {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 106
Score = 71.2 bits (174), Expect = 3e-15
Identities = 21/99 (21%), Positives = 45/99 (45%), Gaps = 16/99 (16%)
Query: 1347 GKVTNLTDYGAFVEIEKGIEGLVHISEMDWINKNVT----------PSKIVQLNDTVEIM 1396
G+V ++ ++G+FV + ++GL+H+S++ + K++++ D V
Sbjct: 9 GEVVDVVEFGSFVRLG-PLDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRAR 67
Query: 1397 ILEINEERRR-----ISLGMKQCKDNPWENFSIIHKKGE 1430
I+ I+ + R I+L M+Q E K +
Sbjct: 68 IVAISLKAERKRGSKIALTMRQPYLGKLEWIEEEKAKKQ 106
Score = 70.5 bits (172), Expect = 5e-15
Identities = 21/94 (22%), Positives = 44/94 (46%), Gaps = 16/94 (17%)
Query: 1255 KEGCTVKGVVKNITDYGAFIDLGGIDGLLHITDIAWRRV-----------KHPSEILTIG 1303
+ ++G V ++ ++G+F+ LG +DGL+H++ I V K ++L IG
Sbjct: 2 EMYELIEGEVVDVVEFGSFVRLGPLDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIG 61
Query: 1304 QDISTKILKYDQEKNR-----VSLGMKQLGIDPW 1332
+ +I+ + R ++L M+Q +
Sbjct: 62 DYVRARIVAISLKAERKRGSKIALTMRQPYLGKL 95
Score = 63.9 bits (155), Expect = 9e-13
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 16/97 (16%)
Query: 1427 KKGEKIKGIIKSITDFGIFIGLDGNIDGLIHLSDLSW----------TDPGEEIIRNFKK 1476
+ E I+G + + +FG F+ L +DGLIH+S + G+E + +
Sbjct: 2 EMYELIEGEVVDVVEFGSFVRLGP-LDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEI 60
Query: 1477 GDEIEAIILSIDVEKER-----ISLGIKQLEGDPFNN 1508
GD + A I++I ++ ER I+L ++Q
Sbjct: 61 GDYVRARIVAISLKAERKRGSKIALTMRQPYLGKLEW 97
>d1kl9a2 b.40.4.5 (A:3-88) Eukaryotic initiation factor 2alpha,
eIF2alpha, N-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 86
Score = 66.9 bits (163), Expect = 5e-14
Identities = 16/75 (21%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1255 KEGCTVKGVVKNITDYGAFIDL---GGIDGLLHITDIAWRRVKHPSEILTIGQDISTKIL 1311
+ V V++I + GA++ L I+G++ +++++ RR++ ++++ IG++ ++
Sbjct: 12 EVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVI 71
Query: 1312 KYDQEKNRVSLGMKQ 1326
+ D+EK + L ++
Sbjct: 72 RVDKEKGYIDLSKRR 86
Score = 65.8 bits (160), Expect = 1e-13
Identities = 14/79 (17%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Query: 1338 RYPR-GTRLLGKVTNLTDYGAFVEIEK--GIEGLVHISEMDWINKNVTPSKIVQLNDTVE 1394
++P ++ V ++ + GA+V + + IEG++ +SE+ + +K++++
Sbjct: 9 KFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIR-SINKLIRIGRNEC 67
Query: 1395 IMILEINEERRRISLGMKQ 1413
++++ +++E+ I L ++
Sbjct: 68 VVVIRVDKEKGYIDLSKRR 86
Score = 65.8 bits (160), Expect = 1e-13
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 1427 KKGEKIKGIIKSITDFGIFIGLD--GNIDGLIHLSDLSWTDPGEEIIRNFKKGDEIEAII 1484
+ + + ++SI + G ++ L NI+G+I LS+LS I + + G ++
Sbjct: 12 EVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRI-RSINKLIRIGRNECVVV 70
Query: 1485 LSIDVEKERISLGIKQ 1500
+ +D EK I L ++
Sbjct: 71 IRVDKEKGYIDLSKRR 86
Score = 34.2 bits (78), Expect = 0.016
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 1515 KGSLVNGIIKSIDTNKGAIIQL--SNEVEGYLRISEEDNKHEKKL----KIGENIDVLTV 1568
+V ++SI GA + L N +EG + +SE + + + +IG N V+ +
Sbjct: 13 VEDVVMVNVRSI-AEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVI 71
Query: 1569 LIDHKTRYIQLSFKK 1583
+D + YI LS ++
Sbjct: 72 RVDKEKGYIDLSKRR 86
Score = 33.8 bits (77), Expect = 0.020
Identities = 14/78 (17%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
Query: 1164 EKAMESGEIITGTINGKVKGGLTVL---TNGLKAFLPGSLVDIRPVKDTT--PFEGKTMD 1218
K E +++ + + G V N ++ + S + R ++ G+
Sbjct: 8 HKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNEC 67
Query: 1219 FKVIKLDRKRNNVVLSHR 1236
VI++D+++ + LS R
Sbjct: 68 VVVIRVDKEKGYIDLSKR 85
>d1wi5a_ b.40.4.5 (A:) S1-domain of RRP5 protein homolog (PDCD11,
KIAA0185) {Human (Homo sapiens) [TaxId: 9606]}
Length = 119
Score = 67.1 bits (163), Expect = 1e-13
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
Query: 1251 IETLKEGCTVKGVVKNITDYGAFIDLG--GIDGLLHITDIA-WRRVKHPSEILTIGQDIS 1307
E LK G + G V ++ D+G +D+G G L + + R K+ L +GQ ++
Sbjct: 16 AEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLN 75
Query: 1308 TKILKYDQEKNRVSLGMKQLGIDPWI 1333
+ K VSL + + I
Sbjct: 76 CIVEKVKGNGGVVSLSVGHSEVSTAI 101
Score = 61.3 bits (148), Expect = 1e-11
Identities = 13/77 (16%), Positives = 25/77 (32%), Gaps = 1/77 (1%)
Query: 1427 KKGEKIKGIIKSITDFGIFIGLD-GNIDGLIHLSDLSWTDPGEEIIRNFKKGDEIEAIIL 1485
K G + G + S+ D G + + + L + K G + I+
Sbjct: 20 KPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVE 79
Query: 1486 SIDVEKERISLGIKQLE 1502
+ +SL + E
Sbjct: 80 KVKGNGGVVSLSVGHSE 96
Score = 59.4 bits (143), Expect = 4e-11
Identities = 12/79 (15%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Query: 1342 GTRLLGKVTNLTDYGAFVEIE-KGIEGLVHISEMDWINKNVTPSKIVQLNDTVEIMILEI 1400
G L G V++L D+G V+I G + + + + +++ + ++ ++
Sbjct: 22 GMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKV 81
Query: 1401 NEERRRISLGMKQCKDNPW 1419
+SL + + +
Sbjct: 82 KGNGGVVSLSVGHSEVSTA 100
>d2ba0a1 b.40.4.5 (A:53-135) S1-domain of exosome complex RNA-binding
protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]}
Length = 83
Score = 65.4 bits (159), Expect = 1e-13
Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 1427 KKGEKIKGIIKSITDFGIFIGLDGNIDGLIHLSDLSWTDPGEEIIRNFKKGDEIEAIILS 1486
G+ + GII+ + G + + + +S+ P ++ GD I A +L+
Sbjct: 4 SVGDVVIGIIREVAANGWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLN 63
Query: 1487 IDVEKERISLGIKQLEGDPF 1506
ID K +++L +K P
Sbjct: 64 ID-PKMKVTLTMKDRICRPI 82
Score = 62.3 bits (151), Expect = 2e-12
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 1255 KEGCTVKGVVKNITDYGAFIDL-GGIDGLLHITDIAWR-RVKHPSEILTIGQDISTKILK 1312
G V G+++ + G +D+ L +++ K P+E+L IG I K+L
Sbjct: 4 SVGDVVIGIIREVAANGWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLN 63
Query: 1313 YDQEKNRVSLGMKQLGIDPW 1332
D K +V+L MK P
Sbjct: 64 ID-PKMKVTLTMKDRICRPI 82
Score = 61.6 bits (149), Expect = 3e-12
Identities = 15/73 (20%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 1341 RGTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEMDWINKNVTPSKIVQLNDTVEIMILEI 1400
G ++G + + G V+I + + +SE + N P++++ + D + +L I
Sbjct: 5 VGDVVIGIIREVAANGWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNI 64
Query: 1401 NEERRRISLGMKQ 1413
+ + +++L MK
Sbjct: 65 DPK-MKVTLTMKD 76
>d2ahob2 b.40.4.5 (B:1-84) Eukaryotic initiation factor 2alpha,
eIF2alpha, N-terminal domain {Sulfolobus solfataricus
[TaxId: 2287]}
Length = 84
Score = 65.4 bits (159), Expect = 2e-13
Identities = 23/87 (26%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Query: 1243 MGEERQKLIETLKEGCTVKGVVKNITDYGAFIDL---GGIDGLLHITDIAWRRVKHPSEI 1299
M R KL EG + VK + DYG+++ L GG+ L ++++ + VK+ ++
Sbjct: 1 MIYSRSKLPS---EGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDV 57
Query: 1300 LTIGQDISTKILKYDQEKNRVSLGMKQ 1326
L + + K+++ D+ K V + +K+
Sbjct: 58 LKENRKVIVKVIRVDRRKGTVDVSLKK 84
Score = 62.0 bits (150), Expect = 2e-12
Identities = 13/74 (17%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 1342 GTRLLGKVTNLTDYGAFVEIE--KGIEGLVHISEMDWINKNVTPSKIVQLNDTVEIMILE 1399
G L+ V + DYG++V ++ G++ + SE+ +++ N V + ++
Sbjct: 12 GEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVK-NIRDVLKENRKVIVKVIR 70
Query: 1400 INEERRRISLGMKQ 1413
++ + + + +K+
Sbjct: 71 VDRRKGTVDVSLKK 84
Score = 60.4 bits (146), Expect = 7e-12
Identities = 15/76 (19%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 1427 KKGEKIKGIIKSITDFGIFIGLD--GNIDGLIHLSDLSWTDPGEEIIRNFKKGDEIEAII 1484
+GE + +K + D+G ++ LD G + + S++S + I K+ ++ +
Sbjct: 10 SEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWV-KNIRDVLKENRKVIVKV 68
Query: 1485 LSIDVEKERISLGIKQ 1500
+ +D K + + +K+
Sbjct: 69 IRVDRRKGTVDVSLKK 84
Score = 32.7 bits (74), Expect = 0.056
Identities = 14/76 (18%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 1514 DKGSLVNGIIKSIDTNKGAIIQL--SNEVEGYLRISEEDNKHEKKLK----IGENIDVLT 1567
+G ++ +K + + G+ + L ++ +L SE +K K ++ + V
Sbjct: 10 SEGEILIATVKQV-FDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKV 68
Query: 1568 VLIDHKTRYIQLSFKK 1583
+ +D + + +S KK
Sbjct: 69 IRVDRRKGTVDVSLKK 84
Score = 31.9 bits (72), Expect = 0.11
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 1162 SLEKAMESGEIITGTINGKVKGGLTV---LTNGLKAFLPGSLVDIRPVKDTTPF--EGKT 1216
S K GEI+ T+ G V GL+AFLP S V + VK+ E +
Sbjct: 4 SRSKLPSEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRK 63
Query: 1217 MDFKVIKLDRKRNNVVLSHR 1236
+ KVI++DR++ V +S +
Sbjct: 64 VIVKVIRVDRRKGTVDVSLK 83
>d2z0sa1 b.40.4.5 (A:60-147) S1-domain of exosome complex RNA-binding
protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]}
Length = 88
Score = 64.9 bits (158), Expect = 2e-13
Identities = 15/79 (18%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 1255 KEGCTVKGVVKNITDYGAFIDLG-GIDGLLHITDIAWRRVK----HPSEILTIGQDISTK 1309
+ G V G+++++ F+D+ +L + D R +L +G I K
Sbjct: 6 QAGDVVIGLIQSVGIMNWFVDINSPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAK 65
Query: 1310 ILKYDQEKNRVSLGMKQLG 1328
++ +D+ + L ++ G
Sbjct: 66 VVAFDKTR-SPLLTVQGEG 83
Score = 63.4 bits (154), Expect = 8e-13
Identities = 13/78 (16%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 1427 KKGEKIKGIIKSITDFGIFIGLDGNIDGLIHLSDLSWT---DPGEEIIRNFKKGDEIEAI 1483
+ G+ + G+I+S+ F+ ++ ++ + D +++ K GD I+A
Sbjct: 6 QAGDVVIGLIQSVGIMNWFVDINSPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAK 65
Query: 1484 ILSIDVEKERISLGIKQL 1501
+++ D + L ++
Sbjct: 66 VVAFDKTR-SPLLTVQGE 82
Score = 63.4 bits (154), Expect = 9e-13
Identities = 9/75 (12%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Query: 1342 GTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEMDWINKNVT---PSKIVQLNDTVEIMIL 1398
G ++G + ++ FV+I ++ + + N ++++ D ++ ++
Sbjct: 8 GDVVIGLIQSVGIMNWFVDINSPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVV 67
Query: 1399 EINEERRRISLGMKQ 1413
++ R L ++
Sbjct: 68 AFDKT-RSPLLTVQG 81
>d2je6i1 b.40.4.5 (I:66-152) S1-domain of exosome complex RNA-binding
protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]}
Length = 87
Score = 64.2 bits (156), Expect = 4e-13
Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Query: 1336 SFRYPR-GTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEMDW--INKNVTPSKIVQLNDT 1392
SF YP+ ++G V ++ YG V+I+ + + S + IN + + + D
Sbjct: 1 SFYYPKINDIVIGLVEDVEIYGWVVDIKAPYKAYLPASNLLGRSINVGEDLRRYLDVGDY 60
Query: 1393 VEIMILEINEERRRISLGMKQ 1413
V I + L +K
Sbjct: 61 VIARIENFDRS-IDPVLSVKG 80
Score = 63.9 bits (155), Expect = 6e-13
Identities = 15/78 (19%), Positives = 31/78 (39%), Gaps = 5/78 (6%)
Query: 1255 KEGCTVKGVVKNITDYGAFIDLG-GIDGLLHITDIAWRRVK---HPSEILTIGQDISTKI 1310
K V G+V+++ YG +D+ L +++ R + L +G + +I
Sbjct: 6 KINDIVIGLVEDVEIYGWVVDIKAPYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARI 65
Query: 1311 LKYDQEKNRVSLGMKQLG 1328
+D+ L +K
Sbjct: 66 ENFDRSI-DPVLSVKGKD 82
Score = 62.7 bits (152), Expect = 2e-12
Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Query: 1427 KKGEKIKGIIKSITDFGIFIGLDGNIDGLIHLSDLSW--TDPGEEIIRNFKKGDEIEAII 1484
K + + G+++ + +G + + + S+L + GE++ R GD + A I
Sbjct: 6 KINDIVIGLVEDVEIYGWVVDIKAPYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARI 65
Query: 1485 LSIDVEKERISLGIKQL 1501
+ D L +K
Sbjct: 66 ENFDRSI-DPVLSVKGK 81
>d1y14b1 b.40.4.5 (B:81-171) C-terminal domain of RNA polymerase II
subunit RBP7 (RpoE) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 91
Score = 59.9 bits (145), Expect = 2e-11
Identities = 12/87 (13%), Positives = 24/87 (27%), Gaps = 11/87 (12%)
Query: 1428 KGEKIKGIIKSITDFGIFIGLDGNIDGLIHLSDLSW---------TDPGEEIIRNFKKGD 1478
KGE + G + S + G + + G + + + +
Sbjct: 3 KGEVVDGTVVSCSQHGFEVQV-GPMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKS 61
Query: 1479 EIEAIILSIDVEKERISLGIKQLEGDP 1505
I I + I I ++ D
Sbjct: 62 RIRVKIEGCISQVSSIHA-IGSIKEDY 87
Score = 54.5 bits (131), Expect = 1e-09
Identities = 11/76 (14%), Positives = 26/76 (34%), Gaps = 10/76 (13%)
Query: 1257 GCTVKGVVKNITDYGAFIDLGGIDGLLHITDIAWRRVKHP----------SEILTIGQDI 1306
G V G V + + +G + +G + + + + +++TI I
Sbjct: 4 GEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRI 63
Query: 1307 STKILKYDQEKNRVSL 1322
KI + + +
Sbjct: 64 RVKIEGCISQVSSIHA 79
Score = 51.0 bits (122), Expect = 2e-08
Identities = 10/86 (11%), Positives = 27/86 (31%), Gaps = 10/86 (11%)
Query: 1341 RGTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEMDWINKNV---------TPSKIVQLND 1391
+G + G V + + +G V++ ++ V M + ++ +
Sbjct: 3 KGEVVDGTVVSCSQHGFEVQVG-PMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKS 61
Query: 1392 TVEIMILEINEERRRISLGMKQCKDN 1417
+ + I + I +D
Sbjct: 62 RIRVKIEGCISQVSSIHAIGSIKEDY 87
>d2nn6h1 b.40.4.5 (H:73-167) S1-domain of Ribosomal RNA-processing
protein 4, RRP4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 57.6 bits (139), Expect = 1e-10
Identities = 12/83 (14%), Positives = 30/83 (36%), Gaps = 10/83 (12%)
Query: 1342 GTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEMDWINKN---------VTPSKIVQLNDT 1392
G ++G++T + VE ++ ++ +S M+ + +Q D
Sbjct: 9 GDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDL 68
Query: 1393 VEIMILEINEERRRISLGMKQCK 1415
+ + + +SL + K
Sbjct: 69 ISAEVQAVF-SDGAVSLHTRSLK 90
Score = 55.7 bits (134), Expect = 4e-10
Identities = 13/85 (15%), Positives = 26/85 (30%), Gaps = 12/85 (14%)
Query: 1255 KEGCTVKGVVKNITDYGAFIDLG-GIDGLLHITDIAW----------RRVKHPSEILTIG 1303
+ G V G + + ++ +D +L ++ + L G
Sbjct: 7 EVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEG 66
Query: 1304 QDISTKILKYDQEKNRVSLGMKQLG 1328
IS ++ VSL + L
Sbjct: 67 DLISAEVQAVFS-DGAVSLHTRSLK 90
Score = 53.4 bits (128), Expect = 3e-09
Identities = 13/85 (15%), Positives = 34/85 (40%), Gaps = 10/85 (11%)
Query: 1427 KKGEKIKGIIKSITDFGIFIGLDGNIDGLIHLSDLSW---------TDPGEEIIRNFKKG 1477
+ G+ + G I + + + +D ++ LS ++ + + ++G
Sbjct: 7 EVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEG 66
Query: 1478 DEIEAIILSIDVEKERISLGIKQLE 1502
D I A + ++ +SL + L+
Sbjct: 67 DLISAEVQAVF-SDGAVSLHTRSLK 90
>d2ix0a3 b.40.4.5 (A:558-644) Exoribonuclease 2, RNB {Escherichia coli
[TaxId: 562]}
Length = 87
Score = 55.2 bits (133), Expect = 6e-10
Identities = 11/80 (13%), Positives = 29/80 (36%), Gaps = 12/80 (15%)
Query: 1342 GTRLLGKVTNLTDYGAFVEI-EKGIEGLVHISEMDWINKN-----------VTPSKIVQL 1389
TR ++ +++ G V + + G + + + + + ++
Sbjct: 4 DTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKV 63
Query: 1390 NDTVEIMILEINEERRRISL 1409
D +++ I E+ E R I
Sbjct: 64 TDVIDVTIAEVRMETRSIIA 83
Score = 54.1 bits (130), Expect = 2e-09
Identities = 14/80 (17%), Positives = 23/80 (28%), Gaps = 12/80 (15%)
Query: 1429 GEKIKGIIKSITDFGIFIGLDGN-IDGLIHLSDLSWT----DPGEEII-------RNFKK 1476
+ I I+ G+ + L N I L +E +K
Sbjct: 4 DTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKV 63
Query: 1477 GDEIEAIILSIDVEKERISL 1496
D I+ I + +E I
Sbjct: 64 TDVIDVTIAEVRMETRSIIA 83
Score = 39.8 bits (93), Expect = 2e-04
Identities = 8/78 (10%), Positives = 18/78 (23%), Gaps = 14/78 (17%)
Query: 1259 TVKGVVKNITDYGAFIDL--GGIDGLLHITDIAWRR------------VKHPSEILTIGQ 1304
+ +I+ G + L G + + R + +
Sbjct: 6 RFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTD 65
Query: 1305 DISTKILKYDQEKNRVSL 1322
I I + E +
Sbjct: 66 VIDVTIAEVRMETRSIIA 83
>d2c35b1 b.40.4.5 (B:78-171) C-terminal domain of RNA polymerase II
subunit RBP7 (RpoE) {Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 54.9 bits (132), Expect = 9e-10
Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 13/88 (14%)
Query: 1428 KGEKIKGIIKSITDFGIFIGLDGNIDGLIHLSDLS-----------WTDPGEEIIRNFKK 1476
KGE + ++ + G+F + G + I + + ++
Sbjct: 4 KGEVVDAVVTQVNKVGLFTEI-GPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQ 62
Query: 1477 GDEIEAIILSIDVEKERISLGIKQLEGD 1504
DEI I+ V+K I I L D
Sbjct: 63 DDEIRLKIVGTRVDKNDIFA-IGSLMDD 89
Score = 48.4 bits (115), Expect = 2e-07
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 12/80 (15%)
Query: 1257 GCTVKGVVKNITDYGAFIDLGGIDGLLHITDIAWRRVKHPSE------------ILTIGQ 1304
G V VV + G F ++G + + I P+ ++
Sbjct: 5 GEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDD 64
Query: 1305 DISTKILKYDQEKNRVSLGM 1324
+I KI+ +KN +
Sbjct: 65 EIRLKIVGTRVDKNDIFAIG 84
Score = 43.0 bits (101), Expect = 1e-05
Identities = 13/88 (14%), Positives = 28/88 (31%), Gaps = 12/88 (13%)
Query: 1341 RGTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEMD-----------WINKNVTPSKIVQL 1389
+G + VT + G F EI + + + K + ++Q
Sbjct: 4 KGEVVDAVVTQVNKVGLFTEIG-PMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQ 62
Query: 1390 NDTVEIMILEINEERRRISLGMKQCKDN 1417
+D + + I+ ++ I D
Sbjct: 63 DDEIRLKIVGTRVDKNDIFAIGSLMDDY 90
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 194
Score = 45.7 bits (107), Expect = 1e-05
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 860 PVITIDGPTASGKGTVAQLVASKLGFHYLDSGALYR 895
V+ + G +GKGT + K G+ +L +G L R
Sbjct: 2 LVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLR 37
>d2nn6g1 b.40.4.5 (G:107-194) S1-domain of exosome component 3 (RRP40)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 42.9 bits (101), Expect = 1e-05
Identities = 11/77 (14%), Positives = 26/77 (33%), Gaps = 3/77 (3%)
Query: 1427 KKGEKIKGIIKSITDFGIFIGLDGNIDGLIHLSDLSWTDPGEEIIRNFKKGDEIEAIILS 1486
KG+ + GI+ + + + + G+ + + N + GD I +
Sbjct: 5 VKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEG--ATKRNRPNVQVGDLIYGQFVV 62
Query: 1487 IDVEKERISLGIKQLEG 1503
+ + E + G
Sbjct: 63 ANKDME-PEMVCIDSCG 78
Score = 37.1 bits (86), Expect = 0.002
Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 2/65 (3%)
Query: 1255 KEGCTVKGVVKNITDYGAFIDLGG-IDGLLHITDIAWRRVKHPSEILTIGQDISTKILKY 1313
+G V G+V + +D+GG L K + +G I + +
Sbjct: 5 VKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEG-ATKRNRPNVQVGDLIYGQFVVA 63
Query: 1314 DQEKN 1318
+++
Sbjct: 64 NKDME 68
Score = 36.0 bits (83), Expect = 0.004
Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 4/70 (5%)
Query: 1338 RY-PR-GTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEMDWINKNVTPSKIVQLNDTVEI 1395
RY P G ++G VT + V++ + + K P VQ+ D +
Sbjct: 1 RYVPVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRP--NVQVGDLIYG 58
Query: 1396 MILEINEERR 1405
+ N++
Sbjct: 59 QFVVANKDME 68
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 44.6 bits (104), Expect = 2e-05
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 854 MIKKYIPVITIDGPTASGKGTVAQLVASKLGFHYLDSGALYR 895
M K V+ + G SGKGT + G+ +L +G L R
Sbjct: 1 MEKSKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLR 42
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 44.2 bits (103), Expect = 4e-05
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 859 IPVITIDGPTASGKGTVAQLVASKLGFHYLDSGALYR 895
+ VI + G +GKGT + + F +L +G L R
Sbjct: 8 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLR 44
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 40.3 bits (93), Expect = 6e-04
Identities = 9/34 (26%), Positives = 20/34 (58%)
Query: 862 ITIDGPTASGKGTVAQLVASKLGFHYLDSGALYR 895
+ + G +GKGT A+ + + G ++ +G ++R
Sbjct: 3 LVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFR 36
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 39.9 bits (92), Expect = 8e-04
Identities = 18/85 (21%), Positives = 33/85 (38%)
Query: 859 IPVITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELELVILI 918
+P I + G GK T+ + +ASK G Y++ G L R L + L+ ++
Sbjct: 4 LPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVV 63
Query: 919 KKLNYNFLGKEVYLNGVNVTTLIRN 943
+L+ V ++
Sbjct: 64 DELDNQMREGGVIVDYHGCDFFPER 88
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 39.9 bits (92), Expect = 0.001
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 860 PVITIDGPTASGKGTVAQLVASKLGFHYLDSGALYR 895
+ I G ASGKGT +L+ +K ++ +G L R
Sbjct: 4 LKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLR 39
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
globisporus [TaxId: 1459]}
Length = 182
Score = 39.9 bits (92), Expect = 0.001
Identities = 12/65 (18%), Positives = 27/65 (41%)
Query: 862 ITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELELVILIKKL 921
I + G +GKGT A + K G ++ +G ++R ++ + ++ L+
Sbjct: 3 IVLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPDE 62
Query: 922 NYNFL 926
+
Sbjct: 63 VTIGI 67
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 39.5 bits (91), Expect = 0.001
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 862 ITIDGPTASGKGTVAQLVASKLGFHYLDSGALYR 895
+ + GP +GKGT A +A KLG + +G L+R
Sbjct: 3 VLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFR 36
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 39.4 bits (91), Expect = 0.001
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 862 ITIDGPTASGKGTVAQLVASKLGFHYLDSGALYR 895
I G SGKGTV+ + +L SG L R
Sbjct: 9 AAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLR 42
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 39.2 bits (90), Expect = 0.001
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 862 ITIDGPTASGKGTVAQLVASKLGFHYLDSGALYR 895
+ GP +GKGT A +A +L +G + R
Sbjct: 6 AVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLR 39
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia
coli [TaxId: 562]}
Length = 179
Score = 38.8 bits (89), Expect = 0.002
Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 5/87 (5%)
Query: 862 ITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDN-----ELELVI 916
I + G +GKGT AQ + K G + +G + R S Q + +L
Sbjct: 3 IILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDE 62
Query: 917 LIKKLNYNFLGKEVYLNGVNVTTLIRN 943
L+ L + +E NG + R
Sbjct: 63 LVIALVKERIAQEDCRNGFLLDGFPRT 89
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 38.8 bits (89), Expect = 0.002
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 857 KYIPVITIDGPTASGKGTVAQLVASKLGFHYLDSG 891
K +I + G SGKGT + + K G+ +L +G
Sbjct: 6 KKSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG 40
>d2ja9a1 b.40.4.5 (A:62-151) S1-domain of exosome component 3 (RRP40)
{Saccharomyces cerevisiae [TaxId: 4932]}
Length = 90
Score = 36.3 bits (84), Expect = 0.003
Identities = 10/81 (12%), Positives = 20/81 (24%), Gaps = 6/81 (7%)
Query: 1255 KEGCTVKGVVKNITDYGAFIDLGG-IDGLLHITDIAWRRVKHPSEILTIGQDISTKILKY 1313
V GV+ + L + K L +G + ++
Sbjct: 6 SVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYARVCTA 65
Query: 1314 DQEKNRVSLGMKQLGIDPWIG 1334
++E + D G
Sbjct: 66 EKE-LEAEIEC----FDSTTG 81
Score = 34.8 bits (80), Expect = 0.010
Identities = 8/66 (12%), Positives = 19/66 (28%), Gaps = 1/66 (1%)
Query: 1427 KKGEKIKGIIKSITDFGIFIGLDGNIDGLIHLSDLSWTDPGEEIIRNFKKGDEIEAIILS 1486
+ + G+I + L + + + GD + A + +
Sbjct: 6 SVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNASKK-NRPTLQVGDLVYARVCT 64
Query: 1487 IDVEKE 1492
+ E E
Sbjct: 65 AEKELE 70
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 38.0 bits (87), Expect = 0.003
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 862 ITIDGPTASGKGTVAQLVASKLGFHYLDSGALYR 895
+ + GP +GKGT A + + +L +G + R
Sbjct: 5 MVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLR 38
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 36.1 bits (82), Expect = 0.014
Identities = 16/54 (29%), Positives = 23/54 (42%)
Query: 860 PVITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELE 913
P + G SGK T+ + +A LG LD+ T +I + D E E
Sbjct: 2 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQE 55
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 36.1 bits (82), Expect = 0.015
Identities = 11/53 (20%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 861 VITIDGPTASGKGTVAQLVASKLG--FHYLDSGALYRLVTLSAINNNIQLDNE 911
++ + G SGK T+A+ +A+ G + S L+ + I+ + ++
Sbjct: 6 ILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ 58
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 35.8 bits (81), Expect = 0.018
Identities = 21/209 (10%), Positives = 51/209 (24%), Gaps = 40/209 (19%)
Query: 861 VITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELELVILIKK 920
+I ++G +++GK + + + S L +L + LI+
Sbjct: 5 MIILNGGSSAGKSGIVRCLQSVLPEPWLA----------------------FGVDSLIEA 42
Query: 921 LNYNFLGKEVYLNGVNVTTLIRNEKVSNNASKIAKFKNIRKELFKIQVKFRKFPGLVADG 980
+ E + + + A+ + F G A
Sbjct: 43 MPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQ 102
Query: 981 RDMGTTVFPDAFLKIFLTADIKQRTKRRYKQLMQKGFSVSMSDLLINLIKRDIRDKTRNL 1040
+ V L + + D R + R +
Sbjct: 103 ERWRSFVGDLDVLWVGVRCDGAVAEGRETARG-----------------DRVAGMAAKQA 145
Query: 1041 SPLKCPEQAHL-LNTSKMNINQVVNQILD 1068
+ + + ++T+ + I
Sbjct: 146 YVVHEGVEYDVEVDTTHKESIECAWAIAA 174
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 35.5 bits (80), Expect = 0.021
Identities = 31/207 (14%), Positives = 55/207 (26%), Gaps = 45/207 (21%)
Query: 862 ITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELELVILIKKL 921
I + GP +GK T+ + +A +L + DS T + + L+ E
Sbjct: 5 IFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADVGWVFDLEGE---------- 54
Query: 922 NYNFLGKEVYLNGVNVTTLIRNEKVSNNASKIAKFKNIRKELFKIQVKFRKFPGLVADGR 981
R+ + K + L A G
Sbjct: 55 -----------------EGFRDREEKVINELTEKQGIVLATGGGSVKSRETRNRLSARGV 97
Query: 982 DMGTTVFPDAFLKIFLTADIKQRTKRRYKQLMQKGFSVSMSDLLINLIKRDIRDKTRNLS 1041
+ + RT+R K+ + + L +R+
Sbjct: 98 VVYLETTIE---------KQLARTQRDKKRPLLHVETPPREVLEALANERN--------- 139
Query: 1042 PLKCPEQAHLLNTSKMNINQVVNQILD 1068
PL + T + V NQI+
Sbjct: 140 PLYEEIADVTIRTDDQSAKVVANQIIH 166
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 213
Score = 35.7 bits (81), Expect = 0.028
Identities = 40/214 (18%), Positives = 75/214 (35%), Gaps = 14/214 (6%)
Query: 861 VITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELELVILIKK 920
+I + G TASGK +V + LG + +D ++V LS + L +E + L +
Sbjct: 4 LIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQK-QVVILSQDSFYRVLTSEQKAKALKGQ 62
Query: 921 LNYNFLGKEVYLNGVNVTTLIRNEKVSNNASKIAKFKNIRKELFKIQVKFRKFPGLVADG 980
N++ + E +I + + + V ++ +G
Sbjct: 63 FNFDHPDAFDNELILK----TLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEG 118
Query: 981 RDMGTT--VFPDAFLKIFLTADIKQRTKRRYKQLMQKGFSVSMSDLLINLIKRDIRDKTR 1038
+ V +K+F+ D R RR + + + + +L I
Sbjct: 119 ILAFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISERGR-DLEQILSQYITFVKPAFEE 177
Query: 1039 NLSPLKCPEQAHL-LNTSKMN---INQVVNQILD 1068
P K + A + + N IN +V I D
Sbjct: 178 FCLPTK--KYADVIIPRGADNLVAINLIVQHIQD 209
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 34.6 bits (78), Expect = 0.048
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 861 VITIDGPTASGKGTVAQLVASKLGFHYLDSGALYR 895
+ + G + SGK VA VA +L +LD L+
Sbjct: 8 IYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHP 42
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 33.8 bits (76), Expect = 0.072
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 861 VITIDGPTASGKGTVAQLVASKLGFHYLDSGALYR 895
+ I GP GK T + +A++L G +
Sbjct: 4 LYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIIN 38
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae
[TaxId: 2188]}
Length = 190
Score = 34.2 bits (77), Expect = 0.079
Identities = 21/210 (10%), Positives = 51/210 (24%), Gaps = 27/210 (12%)
Query: 861 VITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELELVILIKK 920
V+ + G G T +QL L ++ + + + L ++ + + +
Sbjct: 3 VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDP 62
Query: 921 LNYNFLGKEVYLNGVNVTTLIRNEKVSNNASKIAKFKNIRKELFKIQVKFRKFPGLVADG 980
+ KIA+ G + G
Sbjct: 63 ET-------------------QKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPKGYL-PG 102
Query: 981 RDMGTTVFPDAFLKIFLTADIKQRTKRRYKQLMQKGFSVSMSDLLINLIKRDIRDKTRNL 1040
+ L I + + RR + + I++
Sbjct: 103 LPSWVLNELNPDLIIVVETTGDEILMRR-----MSDETRVRDLDTASTIEQHQFMNRCAA 157
Query: 1041 SPLKCPEQA--HLLNTSKMNINQVVNQILD 1068
A ++ ++Q V ++ +
Sbjct: 158 MSYGVLTGATVKIVQNRNGLLDQAVEELTN 187
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides
[TaxId: 1063]}
Length = 288
Score = 34.5 bits (79), Expect = 0.088
Identities = 22/163 (13%), Positives = 41/163 (25%), Gaps = 17/163 (10%)
Query: 860 PVITIDGPTASGKGTVAQLVASKLG-------------FHYLDSGALYRLVTLSAINNNI 906
P+I++ G + +G TV FH + + + +
Sbjct: 5 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAAGDA 64
Query: 907 QLDNELELVILIKKLNYNFLGKEVYLNGVNVTTLIRNEKVSNNASKIAKFKNIRKELFKI 966
+ +K+L F Y T + A N
Sbjct: 65 TFSHFSYEANELKELERVF---REYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFD 121
Query: 967 Q-VKFRKFPGLVADGRDMGTTVFPDAFLKIFLTADIKQRTKRR 1008
+ GL + + A LKI + I ++
Sbjct: 122 SDSHLLFYEGLHGAVVNSEVNIAGLADLKIGVVPVINLEWIQK 164
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 33.6 bits (75), Expect = 0.13
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 861 VITIDGPTASGKGTVAQLVASKLGFHYLD 889
V+ IDG + SGK T+A ++ L +
Sbjct: 24 VLGIDGLSRSGKTTLANQLSQTLREQGIS 52
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi
[TaxId: 556]}
Length = 170
Score = 32.6 bits (73), Expect = 0.21
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 862 ITIDGPTASGKGTVAQLVASKLGFHYLDSGALY 894
I + G G TV + +A LG+ ++D+
Sbjct: 5 IFMVGARGCGMTTVGRELARALGYEFVDTDIFM 37
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major
[TaxId: 5664]}
Length = 174
Score = 31.9 bits (71), Expect = 0.31
Identities = 19/140 (13%), Positives = 39/140 (27%)
Query: 862 ITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELELVILIKKL 921
I I G +GK ++A+++A++L + +LD + +L
Sbjct: 8 ILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTHIIEEKDEDRL 67
Query: 922 NYNFLGKEVYLNGVNVTTLIRNEKVSNNASKIAKFKNIRKELFKIQVKFRKFPGLVADGR 981
V V + + LF+ K + A+
Sbjct: 68 LDFMEPIMVSRGNHVVDYHSSELFPERWFHMVVVLHTSTEVLFERLTKRQYSEAKRAENM 127
Query: 982 DMGTTVFPDAFLKIFLTADI 1001
+ + + DI
Sbjct: 128 EAEIQCICEEEARDAYEDDI 147
>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type
1, different strains [TaxId: 10298]}
Length = 329
Score = 32.7 bits (74), Expect = 0.33
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 859 IPVITIDGPTASGKGTVAQLVASKLGFH 886
+ + IDGP GK T QL+ +
Sbjct: 4 LLRVYIDGPHGMGKTTTTQLLVALGSRD 31
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 32.0 bits (71), Expect = 0.37
Identities = 25/209 (11%), Positives = 59/209 (28%), Gaps = 45/209 (21%)
Query: 861 VITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELELVILIKK 920
I + G SGK +A+ + L
Sbjct: 8 TIFLTGYMNSGKDAIARALQVTLNQQGGR------------------------------- 36
Query: 921 LNYNFLGKEVYLNGVNVTTLIRNEKVSNNASKIAKFKNIRKELFKIQVKFRKFPGLVADG 980
+ + L + + ++ E N +IA + P +
Sbjct: 37 -SVSLLLGDTVRHELSSELGFTREDRHTNIQRIAFVATELTRAGAAVIAAPIAPYEESRK 95
Query: 981 RDMGTTVFPDAFLKIFLTADIKQRTKRRYKQLMQKGFSVSMSDLLINLIKRDIRDKTRNL 1040
+F + + ++ + + + + +I+ T
Sbjct: 96 FARDAVSQAGSFFLVHVATPLEHCEQSDKRGIYAA------------ARRGEIKGFTGVD 143
Query: 1041 SPLKCPEQAHL-LNTSKMNINQVVNQILD 1068
P + PE+A L ++ SK ++ +V++I+
Sbjct: 144 DPYETPEKADLVVDFSKQSVRSIVHEIIL 172
>d1hh2p1 b.40.4.5 (P:127-198) S1 domain of NusA {Thermotoga maritima
[TaxId: 2336]}
Length = 72
Score = 29.6 bits (67), Expect = 0.40
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 8/71 (11%)
Query: 1084 RSGEVISAEVIGLDRNFVIINADLKSEAFIPIEE-FKNDNGELEVKIGDFVSVAIESLEN 1142
G V +AEVI + + I K E +P +E + +K GD V V I +
Sbjct: 7 LKGTVTTAEVIRVMGEWADIRIG-KLETRLPKKEWIPGEE----IKAGDLVKVYIIDVVK 61
Query: 1143 GFGDT--ILSR 1151
++SR
Sbjct: 62 TTKGPKILVSR 72
Score = 29.2 bits (66), Expect = 0.69
Identities = 14/70 (20%), Positives = 21/70 (30%), Gaps = 14/70 (20%)
Query: 1425 IHKKGEKIKGIIKSITDFGIFIGLDGNIDGLIHLSDLSWTDPGEEII--RNFKKGDEIEA 1482
KG + + I + L P +E I K GD ++
Sbjct: 5 SELKGTVTTAEVIRVMGEWADIRIGKLETRL----------PKKEWIPGEEIKAGDLVKV 54
Query: 1483 IILSIDVEKE 1492
I+ DV K
Sbjct: 55 YII--DVVKT 62
Score = 26.1 bits (58), Expect = 8.7
Identities = 10/68 (14%), Positives = 21/68 (30%), Gaps = 6/68 (8%)
Query: 1255 KEGCTVKGVVKNITDYGAFIDLGGIDGLLHITDIAWRRVKHPSEILTIGQDISTKILKYD 1314
+G V + A I +G ++ L + P E + G + I+
Sbjct: 7 LKGTVTTAEVIRVMGEWADIRIGKLETRLPKKEWI------PGEEIKAGDLVKVYIIDVV 60
Query: 1315 QEKNRVSL 1322
+ +
Sbjct: 61 KTTKGPKI 68
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni
[TaxId: 197]}
Length = 161
Score = 31.4 bits (70), Expect = 0.52
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 862 ITIDGPTASGKGTVAQLVASKLGFHYLDS 890
I G SGK T+A+ +A L +LDS
Sbjct: 3 IVFIGFMGSGKSTLARALAKDLDLVFLDS 31
>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4
[TaxId: 10331]}
Length = 333
Score = 31.9 bits (72), Expect = 0.56
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 862 ITIDGPTASGKGTVAQLVASKLGFH 886
I +DG GK T +++AS
Sbjct: 9 IYLDGVYGIGKSTTGRVMASAASGG 33
>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase
{Bacteriophage T4 [TaxId: 10665]}
Length = 241
Score = 31.4 bits (70), Expect = 0.75
Identities = 11/112 (9%), Positives = 23/112 (20%), Gaps = 8/112 (7%)
Query: 861 VITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELELVILIKK 920
+I + G SGK T A + S I + + +
Sbjct: 3 LIFLSGVKRSGKDTTADFIMSNYSAVKYQLA--------GPIKDALAYAWGVFAANTDYP 54
Query: 921 LNYNFLGKEVYLNGVNVTTLIRNEKVSNNASKIAKFKNIRKELFKIQVKFRK 972
+ + + L + E ++
Sbjct: 55 CLTRKEFEGIDYDRETNLNLTKLEVITIMEQAFCYLNGKSPIKGVFVFDDEG 106
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 30.5 bits (67), Expect = 0.90
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 861 VITIDGPTASGKGTVA-QLVASKLGFHYLDSGALYR 895
+I G SGK T A + +A GF+ ++ +
Sbjct: 4 IILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQ 39
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 30.8 bits (68), Expect = 1.0
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 862 ITIDGPTASGKGTVAQLVASKLGFHYLD 889
+ I G +SGK + +A+
Sbjct: 10 VAILGGESSGKSVLVNKLAAVFNTTSAW 37
>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus
[TaxId: 274]}
Length = 191
Score = 30.3 bits (67), Expect = 1.3
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 861 VITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVT 898
+I I G SGK TVA L+ G+ LD AL
Sbjct: 5 IIGITGNIGSGKSTVAALL-RSWGYPVLDLDALAARAR 41
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 30.4 bits (67), Expect = 1.5
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 861 VITIDGPTASGKGTVAQLVASKLGFHYLD 889
+ + G GK TV V L ++
Sbjct: 3 IGIVTGIPGVGKSTVLAKVKEILDNQGIN 31
>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus
[TaxId: 10335]}
Length = 331
Score = 30.4 bits (68), Expect = 1.6
Identities = 7/25 (28%), Positives = 9/25 (36%)
Query: 862 ITIDGPTASGKGTVAQLVASKLGFH 886
I +DG GK T A+
Sbjct: 8 IYLDGAYGIGKTTAAEEFLHHFAIT 32
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase)
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 208
Score = 30.2 bits (67), Expect = 1.7
Identities = 36/210 (17%), Positives = 73/210 (34%), Gaps = 40/210 (19%)
Query: 861 VITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELELVILIKK 920
I + G +ASGK T+A + +L + +LD + L K
Sbjct: 26 TIWLTGLSASGKSTLAVELEHQLVRDR--------------RVHAYRLDGDNIRFGLNKD 71
Query: 921 LNYN-FLGKEVYLNGVNVTTLIRNEKVSNNASKIAKFKNIRKELFKIQVKFRKFPGLVAD 979
L ++ E V L + S I+ ++ R R+ +
Sbjct: 72 LGFSEADRNENIRRIAEVAKLFADSNSIAITSFISPYRKDRD-------TARQLHEVATP 124
Query: 980 GRDMGTTVFPDAFLKIFLTADIKQRTKRRYKQLMQKGFSVSMSDLLINLIKRDIRDKTRN 1039
G + G F+++++ ++ +R K L +K + I++ T
Sbjct: 125 GEETG-----LPFVEVYVDVPVEVAEQRDPKGLYKK------------AREGVIKEFTGI 167
Query: 1040 LSPLKCPEQAHL-LNTSKMNINQVVNQILD 1068
+P + P + + ++ + V QI+D
Sbjct: 168 SAPYEAPANPEVHVKNYELPVQDAVKQIID 197
>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis
protein C {Helicobacter pylori [TaxId: 210]}
Length = 371
Score = 30.1 bits (66), Expect = 2.2
Identities = 8/56 (14%), Positives = 17/56 (30%), Gaps = 1/56 (1%)
Query: 431 YNTISKINNISKLQNNDMYKLSDIQAQEILKMPL-QRLTNMEQKKIINKYENVIKK 485
Y I + +L N K ++ + +P L + I + +
Sbjct: 315 YKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFES 370
>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 208
Score = 29.6 bits (65), Expect = 2.2
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 862 ITIDGPTASGKGTVAQLVASKL 883
I I+G +GK T+ + ++
Sbjct: 3 IAIEGVDGAGKRTLVEKLSGAF 24
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 197
Score = 29.6 bits (65), Expect = 2.5
Identities = 6/24 (25%), Positives = 8/24 (33%)
Query: 861 VITIDGPTASGKGTVAQLVASKLG 884
+ I+G SGK T
Sbjct: 11 TVLIEGNIGSGKTTYLNHFEKYKN 34
>d2f3ga_ b.84.3.1 (A:) Glucose-specific factor III (glsIII)
{Escherichia coli [TaxId: 562]}
Length = 150
Score = 28.9 bits (65), Expect = 2.6
Identities = 10/64 (15%), Positives = 24/64 (37%), Gaps = 4/64 (6%)
Query: 1432 IKGIIKSITDFGIFIGL--DGNIDGLIHLSDLSWTDPGEEIIRNFKKGDEIEA--IILSI 1487
+ G I I + + D ++ +H + GE R ++G ++ ++
Sbjct: 45 VDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGEGFKRIAEEGQRVKVGDTVIEF 104
Query: 1488 DVEK 1491
D+
Sbjct: 105 DLPL 108
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId:
562]}
Length = 210
Score = 29.5 bits (65), Expect = 2.8
Identities = 28/215 (13%), Positives = 63/215 (29%), Gaps = 10/215 (4%)
Query: 862 ITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELELVILIKKL 921
I I+G +GK T +V L + R + + ++ L++ IK +
Sbjct: 5 IVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLR-----SLLLDIKSV 59
Query: 922 NYNFLGKEVYLNGVNVTTLIRNEKVSNNASKIAKFKNIRKELFKIQVKFRKFPGLVADGR 981
+ + + + E V A I ++ +
Sbjct: 60 GDEVITDKAEVLMFYAARVQLVETVIKPALA-NGTWVIGDRHDLSTQAYQGGGRGIDQHM 118
Query: 982 DMGTTVFPDAFLKIFLTADIKQRTKRRYKQLMQKGFSVSMSDLLINLIKRDIRDKTRNLS 1041
+ LT + + K+ +G + + R R + L+
Sbjct: 119 LATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGELDRIEQESFDFFNR-TRARYLELA 177
Query: 1042 PLKCPEQAHLLNTSKMNINQVVNQILDCFATLFKE 1076
+ H ++ ++ + V++ I KE
Sbjct: 178 --AQDKSIHTIDATQ-PLEAVMDAIRTTVTHWVKE 209
>d1n1fa_ a.26.1.3 (A:) Interleukin-19 {Human (Homo sapiens) [TaxId:
9606]}
Length = 156
Score = 29.0 bits (65), Expect = 2.9
Identities = 8/46 (17%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 1404 RRRISLGMKQCKDNPWENFSIIHKKGEKI---KGIIKSITDFGIFI 1446
R+ C+ +IH +++ IKS+ + +F+
Sbjct: 98 RQCQEQRQCHCRQEATNATRVIHDNYDQLEVHAAAIKSLGELDVFL 143
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 209
Score = 29.2 bits (64), Expect = 3.3
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 862 ITIDGPTASGKGTVAQLVASKL 883
I ++G +GK T ++ + L
Sbjct: 6 IVLEGVDRAGKSTQSRKLVEAL 27
>d2gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc
{Mycoplasma capricolum [TaxId: 2095]}
Length = 154
Score = 28.6 bits (64), Expect = 3.9
Identities = 8/64 (12%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 1432 IKGIIKSITDFGIFIGL--DGNIDGLIHLSDLSWTDPGEEIIRNFKKGDEIEA--IILSI 1487
+ G + + G+ ++ L+H+ + + G + E+ A ++++
Sbjct: 51 VSGKLVTAFPTKHAFGIQTKSGVEILLHIGLDTVSLDGNGFESFVTQDQEVNAGDKLVTV 110
Query: 1488 DVEK 1491
D++
Sbjct: 111 DLKS 114
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 28.7 bits (63), Expect = 3.9
Identities = 8/39 (20%), Positives = 14/39 (35%)
Query: 861 VITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTL 899
V+ G +GK T Q G+ +++ L
Sbjct: 16 VVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQRC 54
>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 241
Score = 28.8 bits (63), Expect = 4.2
Identities = 10/56 (17%), Positives = 22/56 (39%)
Query: 862 ITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELELVIL 917
++I+G A GK T +L+ ++ + + + A N + +L
Sbjct: 5 LSIEGNIAVGKSTFVKLLTKTYPEWHVATEPVATWQNIQAAGNQKACTAQSLGNLL 60
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS
kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 28.5 bits (62), Expect = 4.7
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 1024 LLINLIKRDIRDKTRNLSPLKCPEQAHL-LNTSKMNINQVVNQILD 1068
L +I+ T S + PE L L T ++N V Q+++
Sbjct: 140 LYKKARAGEIKGFTGIDSEYEKPEAPELVLKTDSCDVNDCVQQVVE 185
>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae
[TaxId: 727]}
Length = 205
Score = 28.3 bits (62), Expect = 5.5
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 861 VITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELELVILIKK 920
++ + G SGK T+A L LG +D+ + R V ++ IL ++
Sbjct: 4 IVGLTGGIGSGKTTIANLFT-DLGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQ 62
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 214
Score = 28.3 bits (62), Expect = 5.6
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 862 ITIDGPTASGKGTVAQLVASKL 883
I I+G +GK T ++ KL
Sbjct: 6 ILIEGLDRTGKTTQCNILYKKL 27
>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli
[TaxId: 562]}
Length = 208
Score = 28.3 bits (62), Expect = 5.7
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 861 VITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVT 898
++ + G SGK TVA A LG + +D+ + R V
Sbjct: 5 IVALTGGIGSGKSTVANAFA-DLGINVIDADIIARQVV 41
>d2ot2a1 b.40.14.1 (A:1-90) Hydrogenase expression/formation protein
HypC {Escherichia coli [TaxId: 562]}
Length = 90
Score = 26.6 bits (59), Expect = 7.1
Identities = 9/81 (11%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
Query: 1089 ISAEVIGLDRNFVIINADLKSEAFIPIEEFKNDNGELEVKIGDFVSVAIESLENGFGDTI 1148
+ ++ +D N ++ + + + + + + ++G +V V + GF ++
Sbjct: 5 VPGQIRTIDGNQAKVDVC-GIQRDVDLTLVGSCDENGQPRVGQWVLVHV-----GFAMSV 58
Query: 1149 LSRDKAKR-LASWLSLEKAME 1168
++ +A+ L + ++
Sbjct: 59 INEAEARDTLDALQNMFDVEP 79
>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 241
Score = 28.1 bits (61), Expect = 9.6
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 862 ITIDGPTASGKGTVAQLVASKL 883
I+I+G A+GK T ++
Sbjct: 5 ISIEGNIAAGKSTFVNILKQLC 26
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.137 0.384
Gapped
Lambda K H
0.267 0.0449 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 6,021,341
Number of extensions: 306253
Number of successful extensions: 1219
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1127
Number of HSP's successfully gapped: 150
Length of query: 1619
Length of database: 2,407,596
Length adjustment: 98
Effective length of query: 1521
Effective length of database: 1,062,056
Effective search space: 1615387176
Effective search space used: 1615387176
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.2 bits)