Query psy14509
Match_columns 243
No_of_seqs 206 out of 877
Neff 4.6
Searched_HMMs 46136
Date Fri Aug 16 21:42:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14509.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14509hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01159 DRP1 density-regulat 100.0 7.1E-54 1.5E-58 367.4 13.8 168 42-217 1-173 (173)
2 KOG3239|consensus 100.0 5.6E-52 1.2E-56 354.4 11.6 167 44-222 11-192 (193)
3 COG0023 SUI1 Translation initi 99.9 3.9E-24 8.4E-29 170.5 8.0 79 135-216 25-103 (104)
4 cd00474 SUI1_eIF1 The SUI1/eIF 99.9 3.7E-23 8.1E-28 156.7 7.7 76 138-216 1-76 (77)
5 PF01253 SUI1: Translation ini 99.9 1.1E-22 2.4E-27 154.7 8.4 76 135-211 3-82 (83)
6 PRK00939 translation initiatio 99.9 1.5E-22 3.3E-27 160.1 8.0 77 136-215 23-99 (99)
7 TIGR01158 SUI1_rel translation 99.8 6.5E-21 1.4E-25 151.1 8.2 77 136-215 23-100 (101)
8 TIGR01160 SUI1_MOF2 translatio 99.8 6.8E-21 1.5E-25 153.3 8.0 81 136-218 25-109 (110)
9 PRK06824 translation initiatio 99.8 8.8E-19 1.9E-23 142.7 7.7 74 136-212 40-114 (118)
10 PRK07451 translation initiatio 99.8 1E-18 2.2E-23 141.7 7.4 74 136-212 37-111 (115)
11 PRK09019 translation initiatio 99.7 2.2E-18 4.8E-23 138.4 7.2 74 136-212 30-104 (108)
12 KOG1770|consensus 99.7 2.3E-16 5E-21 126.0 7.7 81 136-218 27-111 (112)
13 KOG2522|consensus 99.6 1.3E-16 2.8E-21 153.4 5.0 90 133-223 463-557 (560)
14 PF05046 Img2: Mitochondrial l 97.5 0.00041 8.8E-09 53.7 6.9 67 136-205 11-85 (87)
15 smart00653 eIF2B_5 domain pres 92.7 0.17 3.8E-06 40.9 4.1 67 136-206 6-76 (110)
16 KOG4034|consensus 92.0 0.34 7.3E-06 42.0 5.3 68 136-205 95-167 (169)
17 PRK03988 translation initiatio 91.0 0.26 5.7E-06 41.4 3.6 65 136-206 30-98 (138)
18 TIGR00311 aIF-2beta translatio 90.6 0.29 6.3E-06 40.9 3.5 65 136-206 25-93 (133)
19 PF01873 eIF-5_eIF-2B: Domain 90.1 0.24 5.3E-06 40.9 2.6 66 136-205 19-88 (125)
20 PRK12336 translation initiatio 86.7 0.87 1.9E-05 40.2 4.0 65 136-206 26-94 (201)
21 TIGR02174 CXXU_selWTH selT/sel 77.5 1.8 3.9E-05 32.0 2.1 29 43-78 1-29 (72)
22 PF10262 Rdx: Rdx family; Int 64.9 5.4 0.00012 29.5 2.2 28 43-77 3-30 (76)
23 PRK14438 acylphosphatase; Prov 61.8 22 0.00048 27.4 5.2 65 154-220 8-76 (91)
24 PRK14434 acylphosphatase; Prov 61.7 21 0.00046 27.7 5.1 65 154-219 7-77 (92)
25 PRK14444 acylphosphatase; Prov 59.1 27 0.00059 27.0 5.3 65 153-219 8-76 (92)
26 PRK14450 acylphosphatase; Prov 58.7 33 0.00072 26.3 5.7 62 154-219 7-75 (91)
27 PRK14435 acylphosphatase; Prov 54.4 32 0.00068 26.5 4.9 80 154-239 7-90 (90)
28 PRK14421 acylphosphatase; Prov 53.8 32 0.0007 27.2 5.0 83 154-238 9-97 (99)
29 PRK14432 acylphosphatase; Prov 52.5 38 0.00083 26.3 5.2 65 154-220 7-76 (93)
30 PRK14451 acylphosphatase; Prov 52.2 29 0.00063 26.7 4.4 64 155-220 9-76 (89)
31 KOG2794|consensus 51.8 4.2 9.2E-05 38.5 -0.4 19 40-63 121-139 (340)
32 PRK14436 acylphosphatase; Prov 48.2 46 0.001 25.7 5.0 64 154-219 9-76 (91)
33 PRK14447 acylphosphatase; Prov 46.9 58 0.0012 25.3 5.4 65 154-220 9-78 (95)
34 PRK14445 acylphosphatase; Prov 45.8 45 0.00098 25.6 4.6 65 154-220 9-77 (91)
35 PRK14440 acylphosphatase; Prov 45.5 51 0.0011 25.4 4.8 63 154-218 8-74 (90)
36 PRK14449 acylphosphatase; Prov 45.0 47 0.001 25.4 4.6 65 153-219 7-75 (90)
37 PRK14437 acylphosphatase; Prov 43.2 45 0.00099 26.8 4.4 65 154-220 28-96 (109)
38 PRK14425 acylphosphatase; Prov 42.5 42 0.00091 26.1 4.0 63 154-220 11-79 (94)
39 PF00708 Acylphosphatase: Acyl 42.5 37 0.0008 25.6 3.6 52 153-205 8-65 (91)
40 PRK14423 acylphosphatase; Prov 41.7 61 0.0013 25.0 4.7 63 155-219 11-77 (92)
41 PF10691 DUF2497: Protein of u 41.4 19 0.00041 27.3 1.8 17 67-83 47-63 (73)
42 PRK14429 acylphosphatase; Prov 41.0 58 0.0012 25.0 4.5 64 155-220 8-75 (90)
43 PRK14420 acylphosphatase; Prov 40.8 66 0.0014 24.6 4.8 65 154-220 7-75 (91)
44 PTZ00198 60S ribosomal protein 40.6 51 0.0011 27.5 4.4 73 158-240 29-115 (122)
45 PRK14441 acylphosphatase; Prov 39.8 88 0.0019 24.2 5.4 63 154-220 10-78 (93)
46 PRK14427 acylphosphatase; Prov 39.8 68 0.0015 24.9 4.8 65 154-220 11-79 (94)
47 PRK14443 acylphosphatase; Prov 37.9 66 0.0014 25.2 4.4 61 154-218 9-76 (93)
48 PRK14452 acylphosphatase; Prov 37.1 88 0.0019 25.1 5.1 66 153-220 24-93 (107)
49 PRK14439 acylphosphatase; Prov 36.6 73 0.0016 27.8 4.9 63 154-219 80-148 (163)
50 PRK14422 acylphosphatase; Prov 36.5 85 0.0018 24.3 4.8 64 154-219 11-78 (93)
51 PRK14446 acylphosphatase; Prov 36.0 81 0.0018 24.3 4.6 64 154-219 7-74 (88)
52 PRK14442 acylphosphatase; Prov 35.7 81 0.0018 24.3 4.6 65 154-220 9-77 (91)
53 COG1601 GCD7 Translation initi 34.9 34 0.00075 29.3 2.6 49 152-200 43-95 (151)
54 PRK14433 acylphosphatase; Prov 34.7 73 0.0016 24.4 4.2 65 154-220 6-74 (87)
55 PRK14428 acylphosphatase; Prov 33.4 91 0.002 24.6 4.6 63 154-218 13-79 (97)
56 PRK10897 phosphohistidinoprote 31.4 1.4E+02 0.0031 23.0 5.4 40 162-205 43-82 (90)
57 PF00381 PTS-HPr: PTS HPr comp 29.9 79 0.0017 23.4 3.6 40 162-205 41-80 (84)
58 cd00367 PTS-HPr_like Histidine 29.8 1.5E+02 0.0033 21.5 5.1 48 151-204 28-75 (77)
59 PRK14426 acylphosphatase; Prov 29.8 1.1E+02 0.0025 23.5 4.6 65 154-220 9-78 (92)
60 PF06220 zf-U1: U1 zinc finger 29.4 11 0.00024 25.0 -1.0 18 53-76 1-18 (38)
61 PF08421 Methyltransf_13: Puta 28.6 56 0.0012 23.5 2.5 19 35-53 30-48 (62)
62 PRK14430 acylphosphatase; Prov 28.1 1.6E+02 0.0034 22.8 5.1 62 154-219 9-76 (92)
63 cd01057 AAMH_A Aromatic and Al 26.1 48 0.001 33.1 2.3 33 47-80 382-430 (465)
64 KOG0023|consensus 24.8 67 0.0014 31.3 2.9 12 41-52 39-50 (360)
65 PF09183 DUF1947: Domain of un 23.7 32 0.00068 25.8 0.4 31 196-226 11-42 (65)
66 PRK13780 phosphocarrier protei 23.5 2E+02 0.0042 22.0 4.8 40 162-205 41-80 (88)
67 COG3827 Uncharacterized protei 23.2 84 0.0018 28.8 3.1 17 67-83 202-218 (231)
68 PRK05412 putative nucleotide-b 23.1 1.5E+02 0.0033 25.8 4.5 61 149-213 91-156 (161)
69 PRK14448 acylphosphatase; Prov 23.0 1.9E+02 0.0042 22.1 4.7 64 153-218 6-73 (90)
70 PF14803 Nudix_N_2: Nudix N-te 20.3 34 0.00074 22.3 0.0 11 47-57 2-12 (34)
No 1
>TIGR01159 DRP1 density-regulated protein DRP1. This protein family shows weak but suggestive similarity to translation initiation factor SUI1 and its prokaryotic homologs.
Probab=100.00 E-value=7.1e-54 Score=367.37 Aligned_cols=168 Identities=47% Similarity=0.857 Sum_probs=135.3
Q ss_pred CeeeEEcCCCCCCccccccCCChHHHHHHHHhhCcHHHHHhhhccCCCC-CCchhHHHHHHhhcCCchhhhhhhhccccc
Q psy14509 42 PISVLYCGNCSLPVEYCEYHPEYEKCKVWLEKNLPEEFEKLVKLSGDGG-DEDATEEKKRQKRGGKGIVKARKKEEVPKQ 120 (243)
Q Consensus 42 P~~V~YC~vCs~P~EYCEfg~~~~kCk~WL~~n~pel~~~ly~~~~~~~-~~~~~~~~~~q~k~~k~~~k~~~kee~~~~ 120 (243)
|++|+||+|||||+||||||+++++|++||++||||||++||..+.... ...++++.+++..+.++..+.+++....+.
T Consensus 1 p~~V~YCgvCs~P~EyCEf~~~~~kCk~WL~~n~p~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 80 (173)
T TIGR01159 1 PLRVLYCGVCSLPPEYCEFSGDLKRCKVWLSENAPDLYAKLYGTDSPTAEAEAVTIGEAQEEKGEKDLLGIQKAQEAREG 80 (173)
T ss_pred CceeEECCCCCCchHHhcCCCCHHHHHHHHHHhChHHHHHHhhcccchhccccchhhHHHHhhhhhhhhHHHhhhhhhhh
Confidence 7899999999999999999999999999999999999999984322111 111334444444444444333322222211
Q ss_pred cCCCcchhhhccCCCCCcEEEEEeeeCCCceEEEEeccCCCCchHHHHHHHHccccccceEee----cCCEEEEcCCchh
Q psy14509 121 RGGKGIVKARKKEEVPKQVCVSRAPRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVT----GDDEIVIQGDVKD 196 (243)
Q Consensus 121 ~~~k~~~~~kKk~~~~~~I~I~~e~R~krK~VTvV~GLe~f~idlk~lAK~LkkkfACGgSV~----k~~eI~IQGD~~~ 196 (243)
+ +++++..++|+|++++|++||+||+|+||+.|++|++++||.|+++||||+||+ ++++|+|||||++
T Consensus 81 ~--------~~kK~~~~~V~I~~~~R~krK~VT~V~GLe~f~idlk~laK~lkkkfacG~SV~k~~~~~~eI~IQGD~~~ 152 (173)
T TIGR01159 81 G--------KKKKKLPQKVTIKREPRTKRKFVTVIKGLETFDIDLKKASKTFAQKFATGCSVSKSVTGKEEIVIQGDVMD 152 (173)
T ss_pred h--------hhccCCCCeEEEEEEecCCCceEEEEeCCcCCCcCHHHHHHHHHHHhCCCCccccCCCCCCEEEecCCHHH
Confidence 1 233567999999999999999999999999999999999999999999999886 4689999999999
Q ss_pred HHHHhhchhCCCCCcCceeec
Q psy14509 197 DLFDVIPEKWPEIDEDFIEDL 217 (243)
Q Consensus 197 ~V~e~L~ek~~gIp~~~I~~~ 217 (243)
+|.++|.++||+||+++|+++
T Consensus 153 ~v~e~L~~~~~~v~e~~I~~~ 173 (173)
T TIGR01159 153 DIEDYIHEKWPEVGDKDIKDL 173 (173)
T ss_pred HHHHHHHHHcCCCCHHHeeeC
Confidence 999999999999999999874
No 2
>KOG3239|consensus
Probab=100.00 E-value=5.6e-52 Score=354.35 Aligned_cols=167 Identities=59% Similarity=0.982 Sum_probs=143.5
Q ss_pred eeEEcCCCCCCccccccCCChHHHHHHHHhhCcHHHHHhhhccCCC--------C-CCchhHHHHHHhhcCCchhhhhhh
Q psy14509 44 SVLYCGNCSLPVEYCEYHPEYEKCKVWLEKNLPEEFEKLVKLSGDG--------G-DEDATEEKKRQKRGGKGIVKARKK 114 (243)
Q Consensus 44 ~V~YC~vCs~P~EYCEfg~~~~kCk~WL~~n~pel~~~ly~~~~~~--------~-~~~~~~~~~~q~k~~k~~~k~~~k 114 (243)
+|+||||||||+|||||+|.+++||+||++||||+|++||...+.. . +.+++.+++.|++++++..+.
T Consensus 11 ~vlYCGvCSlP~EYCEf~~~~~kCk~WL~~n~pdly~kL~~e~~~~qe~~~s~~~~a~G~~~e~k~ek~~gk~~k~~--- 87 (193)
T KOG3239|consen 11 SVLYCGVCSLPPEYCEFSGDLKKCKEWLEENHPDLYAKLYGEDDPKQEVEASTAEGADGEADEKKKEKRGGKGQKKQ--- 87 (193)
T ss_pred ceEEeeccCCCHHHHHccccHHHHHHHHHhcChhHHHhhhcccChhhhhcccccccccCCchhhHHHhccccchhhh---
Confidence 6999999999999999999999999999999999999999543321 1 234457888899999876442
Q ss_pred hccccccCCCcchhhhccCCCCCcEEEEEeeeCCCceEEEEeccCCCCchHHHHHHHHccccccceEeec----CCEEEE
Q psy14509 115 EEVPKQRGGKGIVKARKKEEVPKQVCVSRAPRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTG----DDEIVI 190 (243)
Q Consensus 115 ee~~~~~~~k~~~~~kKk~~~~~~I~I~~e~R~krK~VTvV~GLe~f~idlk~lAK~LkkkfACGgSV~k----~~eI~I 190 (243)
+...++ ++++..+++|.|.++.|++||.||+|+||+.|+|||+++||.|.++||||+||++ .+||+|
T Consensus 88 -~~~~~~--------e~~k~~pqkV~I~r~~R~KrK~VT~V~GL~~FdIdlk~aaK~fa~KFAtGaSVtk~a~kkdEIvI 158 (193)
T KOG3239|consen 88 -ENRSQR--------EKKKRLPQKVIIKREARTKRKSVTVVKGLETFDIDLKKAAKFFAQKFATGASVTKNAEKKDEIVI 158 (193)
T ss_pred -hhHHHH--------HHhccCCceeEeeecccCCceeEEEEechhhccccHHHHHHHHHHhhccCccccCCCCccceEEE
Confidence 222222 2334578999999999999999999999999999999999999999999999996 799999
Q ss_pred cCCchhHHHHhhchhCCCCCcC--ceeecCCcCC
Q psy14509 191 QGDVKDDLFDVIPEKWPEIDED--FIEDLGDLKS 222 (243)
Q Consensus 191 QGD~~~~V~e~L~ek~~gIp~~--~I~~~~~kKk 222 (243)
|||+.++|.++|.++||++|.+ .|+.++++||
T Consensus 159 QGDv~dDi~d~I~ekw~ev~ed~~~IED~~~kKk 192 (193)
T KOG3239|consen 159 QGDVKDDIFDFIPEKWPEVPEDDVKIEDLGDKKK 192 (193)
T ss_pred eccchHHHHHHHHHhcccCCcccceeecchhhhc
Confidence 9999999999999999999999 7888888776
No 3
>COG0023 SUI1 Translation initiation factor 1 (eIF-1/SUI1) and related proteins [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=3.9e-24 Score=170.49 Aligned_cols=79 Identities=37% Similarity=0.490 Sum_probs=76.0
Q ss_pred CCCcEEEEEeeeCCCceEEEEeccCCCCchHHHHHHHHccccccceEeecCCEEEEcCCchhHHHHhhchhCCCCCcCce
Q psy14509 135 VPKQVCVSRAPRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFI 214 (243)
Q Consensus 135 ~~~~I~I~~e~R~krK~VTvV~GLe~f~idlk~lAK~LkkkfACGgSV~k~~eI~IQGD~~~~V~e~L~ek~~gIp~~~I 214 (243)
..+.|+|++++|++||.||+|+||+.+++||++||+.|+++||||||| ++++|+|||||++.|.++|.++ |++.++|
T Consensus 25 ~~~~V~I~~e~rr~gK~VTiI~Gld~~~~dlk~Lak~LKk~cacGGtv-k~~~IeiQGdhr~~v~~~L~~~--G~k~k~i 101 (104)
T COG0023 25 GDQIVRIRRETRRKGKTVTIIEGLDLKDIDLKKLAKELKKKCACGGTV-KDGEIEIQGDHRDKVKELLIKK--GFKVKNI 101 (104)
T ss_pred cCCeEEEEEEeecCCcEEEEEeCcccchhhHHHHHHHHHHHcCCCcee-cCCEEEEeChHHHHHHHHHHHc--CCchhhc
Confidence 478999999999999999999999999999999999999999999999 8889999999999999999997 9999999
Q ss_pred ee
Q psy14509 215 ED 216 (243)
Q Consensus 215 ~~ 216 (243)
.+
T Consensus 102 ~~ 103 (104)
T COG0023 102 GI 103 (104)
T ss_pred cc
Confidence 75
No 4
>cd00474 SUI1_eIF1 The SUI1/eIF1 (eukaryotic initiation factor 1) fold is found in eukaryotes, archaea, and some bacteria and is thought to play an important role in accurate initiator codon recognition during translation initiation. This fold, which includes two antiparallel alpha helices packed against the same side of a five-strand beta sheet, is structurally similar to other RNA-binding domains suggesting that SUI1/eIF1 may bind RNA. Point mutations in the yeast eIF1 implicate the protein in maintaining accurate start-site selection but its mechanism of action is unknown.
Probab=99.89 E-value=3.7e-23 Score=156.69 Aligned_cols=76 Identities=30% Similarity=0.388 Sum_probs=72.5
Q ss_pred cEEEEEeeeCCCceEEEEeccCCCCchHHHHHHHHccccccceEeecCCEEEEcCCchhHHHHhhchhCCCCCcCceee
Q psy14509 138 QVCVSRAPRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIED 216 (243)
Q Consensus 138 ~I~I~~e~R~krK~VTvV~GLe~f~idlk~lAK~LkkkfACGgSV~k~~eI~IQGD~~~~V~e~L~ek~~gIp~~~I~~ 216 (243)
.|+|++++|++||.||+|+||+.|++|++++|+.|+++||||||| ++++|+|||||+++|.++|.++ |++.++|.+
T Consensus 1 ~V~I~~e~R~~~K~VT~I~Gl~~~~~dlk~l~k~lKk~~~cggtv-~~~~I~lQGD~r~~v~~~L~~~--g~~~~~i~i 76 (77)
T cd00474 1 VVRIRIQQRNGGKTVTTVQGLDLEYADLKKLAKELKKKCACGGTV-KDEVIELQGDQRKKIKEFLIKM--GFAKDNIKI 76 (77)
T ss_pred CEEEEEEECCCCccEEEEECCCCchHhHHHHHHHHHHHcCCCcEE-ecCEEEEeCcHHHHHHHHHHHc--CCCHHHeEe
Confidence 389999999999999999999999999999999999999999999 6799999999999999999998 999988875
No 5
>PF01253 SUI1: Translation initiation factor SUI1; InterPro: IPR001950 In Saccharomyces cerevisiae (Baker's yeast), SUI1 is a translation initiation factor that functions in concert with eIF-2 and the initiator tRNA-Met in directing the ribosome to the proper start site of translation []. SUI1 is a protein of 108 residues. Close homologs of SUI1 have been found [] in mammals, insects and plants. SUI1 is also evolutionary related to hypothetical proteins from Escherichia coli (yciH), Haemophilus influenzae (HI1225) and Methanococcus vannielii.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2OGH_A 1D1R_A 2IF1_A 2XZN_F 2XZM_F.
Probab=99.88 E-value=1.1e-22 Score=154.69 Aligned_cols=76 Identities=42% Similarity=0.634 Sum_probs=65.9
Q ss_pred CCCcEEEEEeeeCCCceEEEEeccCCCCchHHHHHHHHccccccceEee----cCCEEEEcCCchhHHHHhhchhCCCCC
Q psy14509 135 VPKQVCVSRAPRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVT----GDDEIVIQGDVKDDLFDVIPEKWPEID 210 (243)
Q Consensus 135 ~~~~I~I~~e~R~krK~VTvV~GLe~f~idlk~lAK~LkkkfACGgSV~----k~~eI~IQGD~~~~V~e~L~ek~~gIp 210 (243)
..+.|+|++++|++||+||+|+||+.|++|+++||+.|+++|||||||. ++++|+|||||+++|.++|.++| ++|
T Consensus 3 ~~~~I~I~~e~r~~~K~vT~V~gl~~~~~d~~~lak~lkk~~ac~~sv~~~~~k~~~I~iQGd~~~~i~~~L~~~~-~~~ 81 (83)
T PF01253_consen 3 EPPKIHIRVEKRRGRKFVTIVSGLELFGIDLKELAKELKKKFACGGSVTKDPGKGEEIQIQGDHRDEIKDLLVEKG-GIP 81 (83)
T ss_dssp -TTCEEEEEEESSSSEEEEEEES--STTSHHHHHHHHHHHHHTS-EEEEE-TTTSSEEEEESS-HHHHHHHHHHHC-SSE
T ss_pred CCCEEEEEEEeCcCCeEEEEEECCcccccCHHHHHHHHHHhccCceEEeecCCCCCEEEECCcHHHHHHHHHHHhC-CCC
Confidence 4789999999999999999999999999999999999999999999996 36789999999999999999997 555
Q ss_pred c
Q psy14509 211 E 211 (243)
Q Consensus 211 ~ 211 (243)
+
T Consensus 82 k 82 (83)
T PF01253_consen 82 K 82 (83)
T ss_dssp -
T ss_pred C
Confidence 4
No 6
>PRK00939 translation initiation factor Sui1; Reviewed
Probab=99.87 E-value=1.5e-22 Score=160.06 Aligned_cols=77 Identities=30% Similarity=0.513 Sum_probs=73.6
Q ss_pred CCcEEEEEeeeCCCceEEEEeccCCCCchHHHHHHHHccccccceEeecCCEEEEcCCchhHHHHhhchhCCCCCcCcee
Q psy14509 136 PKQVCVSRAPRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIE 215 (243)
Q Consensus 136 ~~~I~I~~e~R~krK~VTvV~GLe~f~idlk~lAK~LkkkfACGgSV~k~~eI~IQGD~~~~V~e~L~ek~~gIp~~~I~ 215 (243)
.+.|+|++++|++||.||+|+||+.|++|++++|+.|+++||||||| ++++|+|||||+++|.++|.+. |||.++|+
T Consensus 23 ~~~i~I~~ekr~~gK~VTiI~Gl~~~~~~lk~l~k~lKk~~gcGgsv-k~~~I~iQGD~r~~v~~~L~~~--G~~~~~i~ 99 (99)
T PRK00939 23 QQRIKIKVDKRRYGKEVTIIEGIDPKDIDLKELAKKLKSKLACGGTV-KDGRIELQGDHRERVKELLIKM--GFSEENIE 99 (99)
T ss_pred CceEEEEEEecCCCceEEEEeCCCCcchhHHHHHHHHHHHhCCCceE-ECCEEEEeCcHHHHHHHHHHHc--CCChhhcC
Confidence 48899999999999999999999999999999999999999999999 7889999999999999999986 99999985
No 7
>TIGR01158 SUI1_rel translation initation factor SUI1, putative, prokaryotic. This family of archaeal and bacterial proteins is homologous to the eukaryotic translation intiation factor SUI1 involved in directing the ribosome to the proper start site of translation by functioning in concert with eIF-2 and the initiator tRNA-Met.
Probab=99.84 E-value=6.5e-21 Score=151.09 Aligned_cols=77 Identities=36% Similarity=0.544 Sum_probs=72.9
Q ss_pred CCcEEEEEeee-CCCceEEEEeccCCCCchHHHHHHHHccccccceEeecCCEEEEcCCchhHHHHhhchhCCCCCcCce
Q psy14509 136 PKQVCVSRAPR-GKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFI 214 (243)
Q Consensus 136 ~~~I~I~~e~R-~krK~VTvV~GLe~f~idlk~lAK~LkkkfACGgSV~k~~eI~IQGD~~~~V~e~L~ek~~gIp~~~I 214 (243)
.+.|+|++++| +++|.||+|+||+.+++|++++|+.|+++||||||| ++++|+|||||+++|.++|.++ |++.++|
T Consensus 23 ~~~i~i~~e~rgr~gK~VTvV~Gl~~~~~~l~~l~k~LKk~~gcGgtv-k~~~IeiQGD~~~~v~~~L~~~--G~~~k~~ 99 (101)
T TIGR01158 23 DQVVRIQRETRGRKGKGVTIIEGLDLSDIDLKELAKELKSKCGCGGTV-KDGVIEIQGDHRDRVKDLLEKK--GFKVKLI 99 (101)
T ss_pred CceEEEEEEEecCCCCEEEEEeCCcCchhhHHHHHHHHHHHhcCCeeE-eCCEEEEeCcHHHHHHHHHHHc--CCCeeec
Confidence 78899999999 789999999999999999999999999999999999 8899999999999999999997 9998876
Q ss_pred e
Q psy14509 215 E 215 (243)
Q Consensus 215 ~ 215 (243)
.
T Consensus 100 ~ 100 (101)
T TIGR01158 100 G 100 (101)
T ss_pred C
Confidence 3
No 8
>TIGR01160 SUI1_MOF2 translation initiation factor SUI1, eukaryotic. Alternate name: MOF2. A similar protein family (see TIGRFAMs model TIGR01158) is found in prokaryotes. The human proteins complements a yeast SUI1 mutatation.
Probab=99.84 E-value=6.8e-21 Score=153.33 Aligned_cols=81 Identities=26% Similarity=0.434 Sum_probs=73.0
Q ss_pred CCcEEEEEeeeCCCceEEEEeccCCCCchHHHHHHHHccccccceEeec----CCEEEEcCCchhHHHHhhchhCCCCCc
Q psy14509 136 PKQVCVSRAPRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTG----DDEIVIQGDVKDDLFDVIPEKWPEIDE 211 (243)
Q Consensus 136 ~~~I~I~~e~R~krK~VTvV~GLe~f~idlk~lAK~LkkkfACGgSV~k----~~eI~IQGD~~~~V~e~L~ek~~gIp~ 211 (243)
...|+|++++|++||.||+|+||+. .+||++++|.|+++|||||||.+ +++|+|||||+++|.++|.++. .+++
T Consensus 25 ~~~I~Iri~qR~grK~VTiI~Gl~~-~~dlk~l~K~lKkk~~cGGsVk~~~~~~~~IelQGD~re~v~~~L~~~g-~~~~ 102 (110)
T TIGR01160 25 SNYIHIRIQQRNGRKTLTTVQGLPK-EYDLKKIVKALKKEFACNGTVIEDPEMGEVIQLQGDQRKNVCEFLISQG-LLKK 102 (110)
T ss_pred cceEEEEEEEccCCccEEEEeccCC-hHHHHHHHHHHHHHhCCCceEEeCCCCCCEEEEeCcHHHHHHHHHHHcC-CCCH
Confidence 5689999999999999999999994 89999999999999999999963 2689999999999999999983 3688
Q ss_pred CceeecC
Q psy14509 212 DFIEDLG 218 (243)
Q Consensus 212 ~~I~~~~ 218 (243)
++|.+.+
T Consensus 103 ~~i~vhg 109 (110)
T TIGR01160 103 DQIKIHG 109 (110)
T ss_pred HHeeecC
Confidence 8998753
No 9
>PRK06824 translation initiation factor Sui1; Validated
Probab=99.77 E-value=8.8e-19 Score=142.66 Aligned_cols=74 Identities=28% Similarity=0.332 Sum_probs=67.8
Q ss_pred CCcEEEEEeee-CCCceEEEEeccCCCCchHHHHHHHHccccccceEeecCCEEEEcCCchhHHHHhhchhCCCCCcC
Q psy14509 136 PKQVCVSRAPR-GKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDED 212 (243)
Q Consensus 136 ~~~I~I~~e~R-~krK~VTvV~GLe~f~idlk~lAK~LkkkfACGgSV~k~~eI~IQGD~~~~V~e~L~ek~~gIp~~ 212 (243)
.+.|+|+++++ +++|.||+|+||+....|+++|+|.||++||||||| ++++|+|||||+++|.++|.+. |+...
T Consensus 40 ~~~vri~~~~kgr~gK~VTvI~Gl~~~~~dlk~l~K~LKkk~gcGGtv-kd~~IeiQGD~r~~v~~~L~~~--G~~~k 114 (118)
T PRK06824 40 DGIVRVRRETKGRGGKTVTVITGVPLAEDALKELAKELKRRCGTGGTL-KDGVIEIQGDHVELLLAELLKR--GFKAK 114 (118)
T ss_pred CceEEEEEEEccCCCceEEEEeCCcCCHHHHHHHHHHHHHHhcCCceE-ecCEEEEcCcHHHHHHHHHHHC--CCeEe
Confidence 56899988866 568999999999999999999999999999999999 8899999999999999999998 77654
No 10
>PRK07451 translation initiation factor Sui1; Validated
Probab=99.76 E-value=1e-18 Score=141.70 Aligned_cols=74 Identities=26% Similarity=0.357 Sum_probs=66.0
Q ss_pred CCcEEEEEee-eCCCceEEEEeccCCCCchHHHHHHHHccccccceEeecCCEEEEcCCchhHHHHhhchhCCCCCcC
Q psy14509 136 PKQVCVSRAP-RGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDED 212 (243)
Q Consensus 136 ~~~I~I~~e~-R~krK~VTvV~GLe~f~idlk~lAK~LkkkfACGgSV~k~~eI~IQGD~~~~V~e~L~ek~~gIp~~ 212 (243)
.+.|+|++++ ++++|.||+|.||+.++.|+++|+|.||++||||||| ++++|+|||||+++|.+||.++ |+...
T Consensus 37 ~~~irI~~~r~gR~GK~VTvV~Gl~~~~~dlk~LaK~LK~k~gcGGtv-kd~~IelQGD~r~~v~~~L~~~--Gf~~k 111 (115)
T PRK07451 37 QQNLRVQATRSGRKGKTVTVITGFQHKPETLAKLLKQLKTQCGSGGTV-KDNTIEIQGDHRQKILEILIKL--GYKAK 111 (115)
T ss_pred ceeEEEEEEecCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCceE-cCCEEEEcCcHHHHHHHHHHHC--CCeEe
Confidence 6778887654 3357999999999999999999999999999999999 8999999999999999999998 77654
No 11
>PRK09019 translation initiation factor Sui1; Validated
Probab=99.75 E-value=2.2e-18 Score=138.44 Aligned_cols=74 Identities=32% Similarity=0.448 Sum_probs=66.6
Q ss_pred CCcEEEEEeeeC-CCceEEEEeccCCCCchHHHHHHHHccccccceEeecCCEEEEcCCchhHHHHhhchhCCCCCcC
Q psy14509 136 PKQVCVSRAPRG-KKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDED 212 (243)
Q Consensus 136 ~~~I~I~~e~R~-krK~VTvV~GLe~f~idlk~lAK~LkkkfACGgSV~k~~eI~IQGD~~~~V~e~L~ek~~gIp~~ 212 (243)
.+.|+|++++++ ++|.||+|+||+....|+++|||.||++||||||| ++++|+|||||+++|.++|.++ |+...
T Consensus 30 ~~~vri~~~r~gRkGK~VTiI~Gl~~~~~dlk~l~K~lKkk~gcGGtv-k~~~IelQGD~r~~v~~~L~~~--Gf~~k 104 (108)
T PRK09019 30 DGIVRIQRQTSGRKGKGVCLITGLDLDDAELKKLAAELKKKCGCGGAV-KDGVIEIQGDKRDLLKSLLEAK--GMKVK 104 (108)
T ss_pred CceEEEEEecCCCCCCeEEEEeCCcCCHHHHHHHHHHHHHHhcCCCeE-EcCEEEEcCcHHHHHHHHHHHC--CCeEE
Confidence 678889877554 47999999999989999999999999999999999 8899999999999999999988 77543
No 12
>KOG1770|consensus
Probab=99.66 E-value=2.3e-16 Score=125.99 Aligned_cols=81 Identities=27% Similarity=0.432 Sum_probs=73.4
Q ss_pred CCcEEEEEeeeCCCceEEEEeccCCCCchHHHHHHHHccccccceEeecC----CEEEEcCCchhHHHHhhchhCCCCCc
Q psy14509 136 PKQVCVSRAPRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGD----DEIVIQGDVKDDLFDVIPEKWPEIDE 211 (243)
Q Consensus 136 ~~~I~I~~e~R~krK~VTvV~GLe~f~idlk~lAK~LkkkfACGgSV~k~----~eI~IQGD~~~~V~e~L~ek~~gIp~ 211 (243)
...|||++++|+|||++|+|.|+.. ..|++.+.+.||+.|||+|+|.++ +.|++|||++++|.+||.... .+.+
T Consensus 27 ~~~ihIRIQQRnGrKtlTtVQgi~~-Eyd~kril~~lKKef~CnGtvved~e~gevIQLqGDqR~nv~~fl~~~g-~~k~ 104 (112)
T KOG1770|consen 27 EKYIHIRIQQRNGRKTLTTVQGIPM-EYDLKKILKSLKKEFACNGTVVEDPEYGEVIQLQGDQRKNVCQFLVQVG-LVKK 104 (112)
T ss_pred cceEEEEEEeeCCceEEEEecCChh-hhhHHHHHHHHHHhccCCCeEecCcccCceEEeccchhhhHHHHHHHhc-cccc
Confidence 4489999999999999999999997 689999999999999999999853 579999999999999999885 6888
Q ss_pred CceeecC
Q psy14509 212 DFIEDLG 218 (243)
Q Consensus 212 ~~I~~~~ 218 (243)
++|.+.+
T Consensus 105 ~~ikihG 111 (112)
T KOG1770|consen 105 DNIKIHG 111 (112)
T ss_pred cceeecC
Confidence 8888754
No 13
>KOG2522|consensus
Probab=99.64 E-value=1.3e-16 Score=153.37 Aligned_cols=90 Identities=20% Similarity=0.306 Sum_probs=85.3
Q ss_pred CCCCCcEEEEEeeeCCCceEEEEeccCCCCchHHHHHHHHccccccceEee-----cCCEEEEcCCchhHHHHhhchhCC
Q psy14509 133 EEVPKQVCVSRAPRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVT-----GDDEIVIQGDVKDDLFDVIPEKWP 207 (243)
Q Consensus 133 ~~~~~~I~I~~e~R~krK~VTvV~GLe~f~idlk~lAK~LkkkfACGgSV~-----k~~eI~IQGD~~~~V~e~L~ek~~ 207 (243)
+++.++|.|..++|.|||.||+|+||+.|+||+..+|..|+++|+|+.||. ++-+|+|||+|.+.|.++|.+.|
T Consensus 463 Kgs~ppi~i~te~RagnKkVT~V~nle~fgiDp~S~aa~Lqk~c~aSTtv~e~pg~kg~eVqvQGnqih~iadlL~k~y- 541 (560)
T KOG2522|consen 463 KGSLPPIKIITEMRAGNKKVTRVSNLEVFGIDPESLAADLQKICSASTTVSESPGFKGAEVQVQGNQIHSIADLLNKSY- 541 (560)
T ss_pred cCCCCceEEeehhhccCceEEEEccceeeccCHHHHHHHHHHHeeeeeecccCCCCCCceEEEecchhhHHHHHHHHhh-
Confidence 678999999999999999999999999999999999999999999999996 45699999999999999999999
Q ss_pred CCCcCceeecCCcCCC
Q psy14509 208 EIDEDFIEDLGDLKSP 223 (243)
Q Consensus 208 gIp~~~I~~~~~kKk~ 223 (243)
|||+++|+++++.+|+
T Consensus 542 gipkK~I~gleka~Kk 557 (560)
T KOG2522|consen 542 GIPKKWIDGLEKAKKK 557 (560)
T ss_pred CCCHHHHhHHHHhhcc
Confidence 9999999999988665
No 14
>PF05046 Img2: Mitochondrial large subunit ribosomal protein (Img2); InterPro: IPR007740 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family of proteins has been identified as part of the mitochondrial large ribosomal subunit in Saccharomyces cerevisiae [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome
Probab=97.49 E-value=0.00041 Score=53.71 Aligned_cols=67 Identities=18% Similarity=0.187 Sum_probs=50.9
Q ss_pred CCcEEEEEeeeC-CCceEEEEeccCCCCchHHHHHHHHcccccc------ceEee-cCCEEEEcCCchhHHHHhhchh
Q psy14509 136 PKQVCVSRAPRG-KKKSVTVVTGLSSFDIDLKVASKFFGTRFAC------GSSVT-GDDEIVIQGDVKDDLFDVIPEK 205 (243)
Q Consensus 136 ~~~I~I~~e~R~-krK~VTvV~GLe~f~idlk~lAK~LkkkfAC------GgSV~-k~~eI~IQGD~~~~V~e~L~ek 205 (243)
...+-|....++ |++.+|+|+..+. |+..|.++|++.+.= ...|. -.+.|+|+||+..+|.+||.++
T Consensus 11 ~~~LPVY~~~k~~g~~~~T~IrkI~G---D~~aL~~dL~~~l~~~~~~~~~~~V~~~~g~i~IkG~~~~~Vk~wL~~~ 85 (87)
T PF05046_consen 11 SGNLPVYLDIKNGGNRKITVIRKIEG---DIWALKKDLRKFLGEKPKKKIDVRVNELTGHIEIKGDHVEEVKKWLLEK 85 (87)
T ss_pred CCcccEEEEEeCCCcEeEEEEEeecC---CHHHHHHHHHHHhhhhcCCCcceEEeecCCEEEEcCccHHHHHHHHHHC
Confidence 334445554444 4699999999997 788888888888752 33443 3579999999999999999887
No 15
>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5.
Probab=92.66 E-value=0.17 Score=40.94 Aligned_cols=67 Identities=15% Similarity=0.283 Sum_probs=51.1
Q ss_pred CCcEEEEEeeeCCCceEEEEeccCCC----CchHHHHHHHHccccccceEeecCCEEEEcCCchhHHHHhhchhC
Q psy14509 136 PKQVCVSRAPRGKKKSVTVVTGLSSF----DIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKW 206 (243)
Q Consensus 136 ~~~I~I~~e~R~krK~VTvV~GLe~f----~idlk~lAK~LkkkfACGgSV~k~~eI~IQGD~~~~V~e~L~ek~ 206 (243)
.++..+.++.++ -|+|.+|... .-+++-+.|.|..-+|+.|++.+++..+|+|.+..+..+-+..+|
T Consensus 6 ~p~~~v~~eG~~----kTvi~Nf~~I~~~L~R~p~hv~kyl~~ELgt~g~id~~~rlii~G~~~~~~i~~~l~~y 76 (110)
T smart00653 6 MPPPQVLREGKG----KTVIVNFADIAKALNRPPDHVLKFLLAELGTQGSIDGKGRLIVNGRFTPKKLQDLLRRY 76 (110)
T ss_pred cCCCeEEEEcCC----eEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeECCCCeEEEEEeeCHHHHHHHHHHH
Confidence 344556655554 6899998754 456899999999999999999655899999998876666555544
No 16
>KOG4034|consensus
Probab=92.02 E-value=0.34 Score=42.04 Aligned_cols=68 Identities=21% Similarity=0.252 Sum_probs=45.5
Q ss_pred CCcEEEEEeeeCCCceEEEEeccCCC----CchHHHHHHHHccccccceEee-cCCEEEEcCCchhHHHHhhchh
Q psy14509 136 PKQVCVSRAPRGKKKSVTVVTGLSSF----DIDLKVASKFFGTRFACGSSVT-GDDEIVIQGDVKDDLFDVIPEK 205 (243)
Q Consensus 136 ~~~I~I~~e~R~krK~VTvV~GLe~f----~idlk~lAK~LkkkfACGgSV~-k~~eI~IQGD~~~~V~e~L~ek 205 (243)
.-+|-..+..| |+|.+|+|+..+.. ..||.......-++-=| +-|. -.+.|.+-||+.+.|.++|.++
T Consensus 95 nlPVYl~~k~~-G~k~lT~IRkVeGDi~aLe~DL~s~L~~~~~~s~~-t~VnelsgqI~~~g~~v~~vr~~L~eK 167 (169)
T KOG4034|consen 95 NLPVYLDYKQR-GNKILTVIRKVEGDIWALENDLRSTLEMSPKKSYA-THVNELSGQIVLKGNHVDTVREWLQEK 167 (169)
T ss_pred CcceEEeeecC-CcEEEEEEEeecccHHHHHHHHHHHHhhccCCChh-hhhhhhcceEEEeCChHHHHHHHHHHc
Confidence 44455554444 58999999999974 23455555444443222 2232 2378999999999999999998
No 17
>PRK03988 translation initiation factor IF-2 subunit beta; Validated
Probab=90.98 E-value=0.26 Score=41.41 Aligned_cols=65 Identities=12% Similarity=0.280 Sum_probs=50.7
Q ss_pred CCcEEEEEeeeCCCceEEEEeccCCC----CchHHHHHHHHccccccceEeecCCEEEEcCCchhHHHHhhchhC
Q psy14509 136 PKQVCVSRAPRGKKKSVTVVTGLSSF----DIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKW 206 (243)
Q Consensus 136 ~~~I~I~~e~R~krK~VTvV~GLe~f----~idlk~lAK~LkkkfACGgSV~k~~eI~IQGD~~~~V~e~L~ek~ 206 (243)
.++..+.++. +| |+|.+|... .-+.+-+.|.|.+-+|+.|++ +++..+|+|.+.....+-+..+|
T Consensus 30 ~p~~~v~~eG---~k--Tvi~Nf~~I~~~L~R~~~hv~ky~~~ELgt~g~i-~~~~lii~G~~~~~~i~~~L~~y 98 (138)
T PRK03988 30 VPKPDVRIEG---NR--TIIRNFKEIADRLNRDPKHVAKFLLKELGTAGNI-EGGRLILQGKFSPRVINEKIDRY 98 (138)
T ss_pred CCCCeEEEEc---Cc--EEEecHHHHHHHHCCCHHHHHHHHHHHhCCceee-cCCEEEEEEeeCHHHHHHHHHHH
Confidence 4555666555 34 999998764 356899999999999999999 78999999998877666555544
No 18
>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative.
Probab=90.60 E-value=0.29 Score=40.92 Aligned_cols=65 Identities=11% Similarity=0.234 Sum_probs=50.2
Q ss_pred CCcEEEEEeeeCCCceEEEEeccCCC----CchHHHHHHHHccccccceEeecCCEEEEcCCchhHHHHhhchhC
Q psy14509 136 PKQVCVSRAPRGKKKSVTVVTGLSSF----DIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKW 206 (243)
Q Consensus 136 ~~~I~I~~e~R~krK~VTvV~GLe~f----~idlk~lAK~LkkkfACGgSV~k~~eI~IQGD~~~~V~e~L~ek~ 206 (243)
.++..+.++. +| |+|.+|... .-+.+-+.|.|..-+|+.|++ .++...|+|.+.....+-+..+|
T Consensus 25 mP~~~v~~eG---~k--Tvi~Nf~~Ia~~L~R~~~~v~ky~~~ELgt~g~i-~~~rlii~G~~~~~~i~~~L~~y 93 (133)
T TIGR00311 25 VPKAYIVIEG---NR--TIIQNFREVAKALNRDEQHLLKYLLKELGTAGNL-EGGRLILQGKFTHFLLNERIEDY 93 (133)
T ss_pred CCCceEEEEc---Cc--EEEecHHHHHHHHCCCHHHHHHHHHHHhCCCcee-cCCEEEEEeecCHHHHHHHHHHH
Confidence 4555555554 34 999998754 356899999999999999999 67899999999887766555554
No 19
>PF01873 eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro: IPR002735 The beta subunit of archaeal and eukaryotic translation initiation factor 2 (IF2beta) and the N-terminal domain of translation initiation factor 5 (IF5) show significant sequence homology []. Archaeal IF2beta contains two independent structural domains: an N-terminal mixed alpha/beta core domain (topological similarity to the common core of ribosomal proteins L23 and L15e), and a C-terminal domain consisting of a zinc-binding C4 finger []. Archaeal IF2beta is a ribosome-dependent GTPase that stimulates the binding of initiator Met-tRNA(i)(Met) to the ribosomes, even in the absence of other factors []. The C-terminal domain of eukaryotic IF5 is involved in the formation of the multi-factor complex (MFC), an important intermediate for the 43S pre-initiation complex assembly []. IF5 interacts directly with IF1, IF2beta and IF3c, which together with IF2-bound Met-tRNA(i)(Met) form the MFC. This entry represents both the N-terminal and zinc-binding domains of IF2, as well as a domain in IF5.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2DCU_B 2D74_B 2E9H_A 2G2K_A 1NEE_A 3CW2_L 2QMU_C 3V11_C 2NXU_A 2QN6_C ....
Probab=90.11 E-value=0.24 Score=40.89 Aligned_cols=66 Identities=18% Similarity=0.320 Sum_probs=48.9
Q ss_pred CCcEEEEEeeeCCCceEEEEeccCCC----CchHHHHHHHHccccccceEeecCCEEEEcCCchhHHHHhhchh
Q psy14509 136 PKQVCVSRAPRGKKKSVTVVTGLSSF----DIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEK 205 (243)
Q Consensus 136 ~~~I~I~~e~R~krK~VTvV~GLe~f----~idlk~lAK~LkkkfACGgSV~k~~eI~IQGD~~~~V~e~L~ek 205 (243)
.+++.|.++.+ .=|+|.+|... .-+++-+++.|..-+|+.|++.+++..+|+|.|..+-.+-+..+
T Consensus 19 mP~~~v~~eG~----~KTvi~Nf~dI~~~L~R~p~~~~ky~~~ELgt~~~id~~~~lii~G~~~~~~i~~~L~~ 88 (125)
T PF01873_consen 19 MPPPQVKIEGK----KKTVIVNFVDICKALNRDPEHVLKYFGKELGTQGSIDGKGRLIINGRFSSKQIQDLLDK 88 (125)
T ss_dssp CCT--EEEETS----TEEEETTHHHHHHHHTSSHHHHHHHHHHHSSSEEEEETTTEEEEESSSSCCHHHHHHHH
T ss_pred cCCCeEEEEcc----ceeeeecHHHHHHHHCCCHHHHHHHHHHHHCCceEECCCCEEEEEEecCHHHHHHHHHH
Confidence 56666776665 45889998754 34799999999999999999965599999999876554444433
No 20
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=86.73 E-value=0.87 Score=40.21 Aligned_cols=65 Identities=11% Similarity=0.208 Sum_probs=49.7
Q ss_pred CCcEEEEEeeeCCCceEEEEeccCCC----CchHHHHHHHHccccccceEeecCCEEEEcCCchhHHHHhhchhC
Q psy14509 136 PKQVCVSRAPRGKKKSVTVVTGLSSF----DIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKW 206 (243)
Q Consensus 136 ~~~I~I~~e~R~krK~VTvV~GLe~f----~idlk~lAK~LkkkfACGgSV~k~~eI~IQGD~~~~V~e~L~ek~ 206 (243)
.++..+.++.+ -|+|.+|... .-+.+-+.|.|..-||+.|++ .++...|+|.|.....+-+..+|
T Consensus 26 ~p~~~v~~eG~-----kT~i~N~~~i~~~l~R~~~~~~ky~~~ELgt~~~~-~~~~~ii~G~~~~~~i~~~l~~y 94 (201)
T PRK12336 26 IPEPKIFIEGK-----TTILTNFGEIADALNRDPDHLMKFLQRELGTAGKI-EGGRAVFNGKFTEEDIQAAIDAY 94 (201)
T ss_pred cCCceEEEEcC-----cEEEecHHHHHHHHCCCHHHHHHHHHHHhCCccee-cCCEEEEEeeeCHHHHHHHHHHH
Confidence 45555665553 2999998764 356899999999999999999 67899999998876666555544
No 21
>TIGR02174 CXXU_selWTH selT/selW/selH selenoprotein domain. This model represents a domain found in both bacteria and animals, including animal proteins SelT, SelW, and SelH, all of which are selenoproteins. In a CXXC motif near the N-terminus of the domain, selenocysteine may replace the second Cys. Proteins with this domain may include an insert of about 70 amino acids. This model is broader than the current SelW model pfam05169 in Pfam.
Probab=77.46 E-value=1.8 Score=32.04 Aligned_cols=29 Identities=31% Similarity=0.709 Sum_probs=22.8
Q ss_pred eeeEEcCCCCCCccccccCCChHHHHHHHHhhCcHH
Q psy14509 43 ISVLYCGNCSLPVEYCEYHPEYEKCKVWLEKNLPEE 78 (243)
Q Consensus 43 ~~V~YC~vCs~P~EYCEfg~~~~kCk~WL~~n~pel 78 (243)
++|+||.-|+ |.+.+..-++-|...+|+.
T Consensus 1 V~IeyC~~C~-------y~~Ra~~l~q~L~~~Fp~~ 29 (72)
T TIGR02174 1 VEIEYCGSCG-------YKPRAAWLKQELLEEFPDL 29 (72)
T ss_pred CEEEECCCCC-------ChHHHHHHHHHHHHHCCCC
Confidence 5799999998 7777777777777777764
No 22
>PF10262 Rdx: Rdx family; InterPro: IPR011893 This entry represents the Rdx family of selenoproteins, which includes mammalian selenoproteins SelW, SelV, SelT and SelH, bacterial SelW-like proteins and cysteine-containing proteins of unknown function in all three domains of life. Mammalian Rdx12 and its fish selenoprotein orthologues are also members of this family []. These proteins possess a thioredoxin-like fold and a conserved CXXC or CxxU (U is selenocysteine) motif near the N terminus, suggesting a redox function. Rdx proteins can use catalytic cysteine (or selenocysteine) to form transient mixed disulphides with substrate proteins. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins. Selenoprotein W (SelW) plays an important role in protection of neurons from oxidative stress during neuronal development [], []. Selenoprotein T (SelT) is conserved from plants to humans. SelT is localized to the endoplasmic reticulum through a hydrophobic domain. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding [, ]. The function of SelT is unknown, although it may have a role in PACAP signaling during PC12 cell differentiation [, ]. Selenoprotein H (SelH) protects neurons against UVB-induced damage by inhibiting apoptotic cell death pathways, by preventing mitochondrial depolarization, and by promoting cell survival pathways [].; GO: 0008430 selenium binding, 0045454 cell redox homeostasis; PDB: 2OJL_B 2FA8_A 2P0G_C 2NPB_A 3DEX_C 2OKA_A 2OBK_G.
Probab=64.91 E-value=5.4 Score=29.50 Aligned_cols=28 Identities=21% Similarity=0.560 Sum_probs=21.2
Q ss_pred eeeEEcCCCCCCccccccCCChHHHHHHHHhhCcH
Q psy14509 43 ISVLYCGNCSLPVEYCEYHPEYEKCKVWLEKNLPE 77 (243)
Q Consensus 43 ~~V~YC~vCs~P~EYCEfg~~~~kCk~WL~~n~pe 77 (243)
++|+||..|++- +.+...++-|...+|+
T Consensus 3 V~IeYC~~C~~~-------~~a~~l~~~l~~~fp~ 30 (76)
T PF10262_consen 3 VTIEYCTSCGYR-------PRALELAQELLQTFPD 30 (76)
T ss_dssp EEEEEETTTTCH-------HHHHHHHHHHHHHSTT
T ss_pred EEEEECCCCCCH-------HHHHHHHHHHHHHCCC
Confidence 689999998754 4467777777777776
No 23
>PRK14438 acylphosphatase; Provisional
Probab=61.78 E-value=22 Score=27.38 Aligned_cols=65 Identities=12% Similarity=0.111 Sum_probs=41.3
Q ss_pred EEeccCCCCchHHHHHHHHccccccceEee--cCC--EEEEcCCchhHHHHhhchhCCCCCcCceeecCCc
Q psy14509 154 VVTGLSSFDIDLKVASKFFGTRFACGSSVT--GDD--EIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGDL 220 (243)
Q Consensus 154 vV~GLe~f~idlk~lAK~LkkkfACGgSV~--k~~--eI~IQGD~~~~V~e~L~ek~~gIp~~~I~~~~~k 220 (243)
.|+|.=. |+-.......++.+++=.|.|. .++ +|.+||+-. +|.+|+.....+-|...|+.++-.
T Consensus 8 ~v~G~VQ-GVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~-~i~~f~~~l~~gp~~a~V~~v~~~ 76 (91)
T PRK14438 8 TVKGLVQ-GVAFRHHTQQTAQRLNVSGWVKNLPNGSVQGCFEGEET-DVAALIDWCHHGPSRARVSGVIVE 76 (91)
T ss_pred EEEEecC-CcCccHHHHHHHHHcCCEEEEEECCCCEEEEEEEECHH-HHHHHHHHHhhCCCCcEEEEEEEE
Confidence 4566554 6667778888888888889995 233 899999853 355555443324344456555443
No 24
>PRK14434 acylphosphatase; Provisional
Probab=61.71 E-value=21 Score=27.71 Aligned_cols=65 Identities=17% Similarity=0.127 Sum_probs=39.7
Q ss_pred EEeccCCCCchHHHHHHHHccccc-cceEee--cCC--EEEEcCCchhHHHHhhchhCCCCC-cCceeecCC
Q psy14509 154 VVTGLSSFDIDLKVASKFFGTRFA-CGSSVT--GDD--EIVIQGDVKDDLFDVIPEKWPEID-EDFIEDLGD 219 (243)
Q Consensus 154 vV~GLe~f~idlk~lAK~LkkkfA-CGgSV~--k~~--eI~IQGD~~~~V~e~L~ek~~gIp-~~~I~~~~~ 219 (243)
.|+|.=. |+-..-+...++++++ =.|.|. .++ +|++||+-.+.|..|+.....+-| ...|+.++-
T Consensus 7 ~v~G~VQ-GVGFR~fv~~~A~~lg~l~G~V~N~~dGsVei~~qG~~~~~l~~f~~~l~~g~pp~a~V~~v~~ 77 (92)
T PRK14434 7 IVSGRVQ-GVGFRYSVYSLALEIGDIYGRVWNNDDGTVEILAQSDDSAKLAKFIQEIRKGPSKWAKVTYVDV 77 (92)
T ss_pred EEEEeec-ceeEhHHHHHHHHHcCCcEEEEEECCCCCEEEEEEcCCHHHHHHHHHHHhcCCCCCEEEEEEEE
Confidence 3555544 5666667777777777 778885 233 899999865445555544433444 455555443
No 25
>PRK14444 acylphosphatase; Provisional
Probab=59.06 E-value=27 Score=27.01 Aligned_cols=65 Identities=12% Similarity=0.160 Sum_probs=40.7
Q ss_pred EEEeccCCCCchHHHHHHHHccccccceEee--cCC--EEEEcCCchhHHHHhhchhCCCCCcCceeecCC
Q psy14509 153 TVVTGLSSFDIDLKVASKFFGTRFACGSSVT--GDD--EIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGD 219 (243)
Q Consensus 153 TvV~GLe~f~idlk~lAK~LkkkfACGgSV~--k~~--eI~IQGD~~~~V~e~L~ek~~gIp~~~I~~~~~ 219 (243)
-.|+|.=. |+-..-.+..++.+++=.|.|. .++ +|++|||-. +|.+|+.....+=|...|+.++.
T Consensus 8 i~v~G~VQ-GVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~qG~~~-~i~~f~~~l~~gp~~a~V~~i~~ 76 (92)
T PRK14444 8 VFISGRVQ-GVNFRAYTRDRAREAGVKGWVRNLSDGRVEAVFEGSRP-AVQKMISWCYSGPSHARVERVEV 76 (92)
T ss_pred EEEEEeeC-CcCcHHHHHHHHHHhCCEEEEEECCCCcEEEEEEcCHH-HHHHHHHHHHhCCCCcEEEEEEE
Confidence 34566655 6677778888888888889995 223 899999953 35555544332323445555543
No 26
>PRK14450 acylphosphatase; Provisional
Probab=58.71 E-value=33 Score=26.31 Aligned_cols=62 Identities=15% Similarity=0.245 Sum_probs=41.2
Q ss_pred EEeccCCCCchHHHHHHHHccccccceEee--cC---CEEEEcCC--chhHHHHhhchhCCCCCcCceeecCC
Q psy14509 154 VVTGLSSFDIDLKVASKFFGTRFACGSSVT--GD---DEIVIQGD--VKDDLFDVIPEKWPEIDEDFIEDLGD 219 (243)
Q Consensus 154 vV~GLe~f~idlk~lAK~LkkkfACGgSV~--k~---~eI~IQGD--~~~~V~e~L~ek~~gIp~~~I~~~~~ 219 (243)
+|+|.=. |+-.......++.+++=.|.|. .+ -+|.+||| ..+...++|. . +=|...|+.++.
T Consensus 7 ~v~G~VQ-GVGFR~~v~~~A~~~~l~G~V~N~~dG~~Vei~~~G~~~~v~~f~~~l~-~--gp~~a~V~~v~~ 75 (91)
T PRK14450 7 IVKGKVQ-GVYFRDFTRTQATRLGLCGYAKNLANGNEVEVVAEGDKDSLLEFLDLLR-S--GPPRAEVKEVET 75 (91)
T ss_pred EEEEEec-CcCcHHHHHHHHHHcCCEEEEEECCCCCEEEEEEEeCHHHHHHHHHHHh-h--CCCCcEEEEEEE
Confidence 4555544 6667778888888888889885 22 37899999 5666666665 3 334455655553
No 27
>PRK14435 acylphosphatase; Provisional
Probab=54.38 E-value=32 Score=26.53 Aligned_cols=80 Identities=14% Similarity=0.173 Sum_probs=46.2
Q ss_pred EEeccCCCCchHHHHHHHHccccccceEee--cC--CEEEEcCCchhHHHHhhchhCCCCCcCceeecCCcCCCccccCc
Q psy14509 154 VVTGLSSFDIDLKVASKFFGTRFACGSSVT--GD--DEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGDLKSPTYNIGK 229 (243)
Q Consensus 154 vV~GLe~f~idlk~lAK~LkkkfACGgSV~--k~--~eI~IQGD~~~~V~e~L~ek~~gIp~~~I~~~~~kKk~~y~~~~ 229 (243)
.|+|.=. |+-.......++.+++=.|.|. .+ -+|++|||-. +|.+|+.....+=|...|+.++...-++-+
T Consensus 7 ~v~G~VQ-GVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~-~i~~f~~~l~~gp~~a~V~~v~~~~~~~~~--- 81 (90)
T PRK14435 7 RVEGIVQ-GVGFRYFTRRVAKSLGVKGYVMNMDDGSVFIHAEGDEN-ALRRFLNEVAKGPPAAVVTNVSVEETTPEG--- 81 (90)
T ss_pred EEEEEeC-CcCChHHHHHHHHHhCCEEEEEECCCCCEEEEEEECHH-HHHHHHHHHhhCCCCcEEEEEEEEEcCCCC---
Confidence 4456554 5666777777777888888885 12 4899999863 355554443323344556555544333211
Q ss_pred ceeeeeeeec
Q psy14509 230 LCFTYTYYYF 239 (243)
Q Consensus 230 ~~~~~~~~~~ 239 (243)
-=.|..||+
T Consensus 82 -~~~F~I~~~ 90 (90)
T PRK14435 82 -YEDFTIKYY 90 (90)
T ss_pred -CCCEEEEeC
Confidence 125666664
No 28
>PRK14421 acylphosphatase; Provisional
Probab=53.79 E-value=32 Score=27.22 Aligned_cols=83 Identities=10% Similarity=0.099 Sum_probs=46.1
Q ss_pred EEeccCCCCchHHHHHHHHccccccceEee--cC--CEEEEcCCchhHHHHhhchhCCCCCcCceeecCCcCCC--cccc
Q psy14509 154 VVTGLSSFDIDLKVASKFFGTRFACGSSVT--GD--DEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGDLKSP--TYNI 227 (243)
Q Consensus 154 vV~GLe~f~idlk~lAK~LkkkfACGgSV~--k~--~eI~IQGD~~~~V~e~L~ek~~gIp~~~I~~~~~kKk~--~y~~ 227 (243)
.|+|.=. |+-...+...++.+++=.|.|. .+ -+|++||+-.. |.+|+.....+=|...|+.++...-+ .||.
T Consensus 9 ~v~G~VQ-GVGFR~fv~~~A~~lgL~G~V~N~~dG~Vei~~~G~~~~-i~~f~~~l~~gP~~a~V~~v~~~~~~~~~~~~ 86 (99)
T PRK14421 9 TIRGRVQ-GVGYRAWVARTAEALGLEGWVRNRRDGSVEALFAGPADA-VAEMIARCRRGPSAARVDAVEDEPAAPDALNL 86 (99)
T ss_pred EEEEeEc-CccchHHHHHHHHHhCCEEEEEECCCCEEEEEEeCCHHH-HHHHHHHHHhCCCCcEEEEEEEEEcCcccccc
Confidence 3455544 5666777777777777888885 12 38999998643 44444333223345566665554333 3433
Q ss_pred Ccceeeeeeee
Q psy14509 228 GKLCFTYTYYY 238 (243)
Q Consensus 228 ~~~~~~~~~~~ 238 (243)
+.-.-.|..||
T Consensus 87 ~~~~~~F~i~~ 97 (99)
T PRK14421 87 RRPGERFSILP 97 (99)
T ss_pred cCCCCCEEEEe
Confidence 22222355444
No 29
>PRK14432 acylphosphatase; Provisional
Probab=52.51 E-value=38 Score=26.29 Aligned_cols=65 Identities=12% Similarity=0.108 Sum_probs=38.7
Q ss_pred EEeccCCCCchHHHHHHHHccccccceEee--cCC--EEEEc-CCchhHHHHhhchhCCCCCcCceeecCCc
Q psy14509 154 VVTGLSSFDIDLKVASKFFGTRFACGSSVT--GDD--EIVIQ-GDVKDDLFDVIPEKWPEIDEDFIEDLGDL 220 (243)
Q Consensus 154 vV~GLe~f~idlk~lAK~LkkkfACGgSV~--k~~--eI~IQ-GD~~~~V~e~L~ek~~gIp~~~I~~~~~k 220 (243)
.|+|.=. |+-.......++++++=.|.|. .++ +|++| ||. +.|.+|+.....|=|...|+.++..
T Consensus 7 ~v~G~VQ-GVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~~G~~-~~v~~f~~~l~~gp~~a~V~~v~~~ 76 (93)
T PRK14432 7 FISGKVQ-GVGFRFFTEQIANNMKLKGFVKNLNDGRVEIVAFFNTK-EQMKKFEKLLKNGNKYSNIENIEKK 76 (93)
T ss_pred EEEEeec-CeeehHHHHHHHHHhCCEEEEEECCCCCEEEEEEECCH-HHHHHHHHHHHhCCCccEEEEEEEE
Confidence 4555444 5666677777777777888885 233 89998 985 4455555443334234455555443
No 30
>PRK14451 acylphosphatase; Provisional
Probab=52.19 E-value=29 Score=26.70 Aligned_cols=64 Identities=9% Similarity=0.042 Sum_probs=42.4
Q ss_pred EeccCCCCchHHHHHHHHccccccceEee----cCCEEEEcCCchhHHHHhhchhCCCCCcCceeecCCc
Q psy14509 155 VTGLSSFDIDLKVASKFFGTRFACGSSVT----GDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGDL 220 (243)
Q Consensus 155 V~GLe~f~idlk~lAK~LkkkfACGgSV~----k~~eI~IQGD~~~~V~e~L~ek~~gIp~~~I~~~~~k 220 (243)
|+|.=. |+-.....+.++.+++-.|.|. +.-+|.+||+-.. |.+|+.....+-|...|+.++..
T Consensus 9 V~G~VQ-GVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~-i~~f~~~l~~gp~~a~V~~v~~~ 76 (89)
T PRK14451 9 ISGRVQ-GVWFRASAKKLAEQLMISGWARNLADGRVEVFACGKEDK-LEEFYTWLQKGPLNARVDVCTRE 76 (89)
T ss_pred EEEeeC-CcCchHHHHHHHHHhCCEEEEEECCCCCEEEEEEECHHH-HHHHHHHHhhCCCceEEEEEEEE
Confidence 667655 7778888899999999999995 1248999998632 44444443324344556555443
No 31
>KOG2794|consensus
Probab=51.77 E-value=4.2 Score=38.46 Aligned_cols=19 Identities=37% Similarity=0.973 Sum_probs=15.2
Q ss_pred CCCeeeEEcCCCCCCccccccCCC
Q psy14509 40 NYPISVLYCGNCSLPVEYCEYHPE 63 (243)
Q Consensus 40 ~~P~~V~YC~vCs~P~EYCEfg~~ 63 (243)
.+|--|+||.|| .|||+..
T Consensus 121 ~fPdL~i~cDVc-----lc~Yssh 139 (340)
T KOG2794|consen 121 RFPDLVIACDVC-----LCEYSSH 139 (340)
T ss_pred hCcceEEEeeee-----eccccCC
Confidence 368899999999 5888654
No 32
>PRK14436 acylphosphatase; Provisional
Probab=48.20 E-value=46 Score=25.69 Aligned_cols=64 Identities=13% Similarity=0.102 Sum_probs=40.7
Q ss_pred EEeccCCCCchHHHHHHHHccccccceEee--cCC--EEEEcCCchhHHHHhhchhCCCCCcCceeecCC
Q psy14509 154 VVTGLSSFDIDLKVASKFFGTRFACGSSVT--GDD--EIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGD 219 (243)
Q Consensus 154 vV~GLe~f~idlk~lAK~LkkkfACGgSV~--k~~--eI~IQGD~~~~V~e~L~ek~~gIp~~~I~~~~~ 219 (243)
.|+|.=. |+-.......++.+++=.|.|. .++ +|++||+-.. |.+|+.....+-|...|+.++.
T Consensus 9 ~v~G~VQ-GVGFR~~v~~~A~~l~l~G~V~N~~dG~Vei~~qG~~~~-i~~f~~~l~~gp~~a~V~~v~~ 76 (91)
T PRK14436 9 RIYGRVQ-GVGFRWSMQREARKLGVNGWVRNLPDGSVEAVLEGDEER-VEALIGWAHQGPPLARVTRVEV 76 (91)
T ss_pred EEEEeeC-CcCcHHHHHHHHHHcCCEEEEEECCCCcEEEEEEcCHHH-HHHHHHHHhhCCCceEEEEEEE
Confidence 3455544 5667777888888888889985 233 8999998633 5555554332434555666553
No 33
>PRK14447 acylphosphatase; Provisional
Probab=46.90 E-value=58 Score=25.32 Aligned_cols=65 Identities=20% Similarity=0.213 Sum_probs=39.8
Q ss_pred EEeccCCCCchHHHHHHHHccccccceEee--cCC---EEEEcCCchhHHHHhhchhCCCCCcCceeecCCc
Q psy14509 154 VVTGLSSFDIDLKVASKFFGTRFACGSSVT--GDD---EIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGDL 220 (243)
Q Consensus 154 vV~GLe~f~idlk~lAK~LkkkfACGgSV~--k~~---eI~IQGD~~~~V~e~L~ek~~gIp~~~I~~~~~k 220 (243)
.|+|.=. |+-..-+.+.++.+++=.|.|. .++ +|.+||+ .+.|.+|+.....+=|...|+.++..
T Consensus 9 ~v~G~VQ-GVGFR~~~~~~A~~~gl~G~V~N~~dG~~Vei~~qG~-~~~l~~f~~~l~~gp~~a~V~~v~~~ 78 (95)
T PRK14447 9 FIRGKVQ-GVFFRQSMKEVANRNGVRGWVRNRSDGRTVEAVLEGP-RDAVLKVIEWARVGPPGARVEDVEVK 78 (95)
T ss_pred EEEEecC-CccchHHHHHHHhhcCeEEEEEECCCCCEEEEEEEeC-HHHHHHHHHHHhhCCCCeEEEEEEEE
Confidence 4566655 6777888888888888888885 233 7888998 33344444332213234455554443
No 34
>PRK14445 acylphosphatase; Provisional
Probab=45.84 E-value=45 Score=25.61 Aligned_cols=65 Identities=15% Similarity=0.151 Sum_probs=41.4
Q ss_pred EEeccCCCCchHHHHHHHHccccccceEee--cCC--EEEEcCCchhHHHHhhchhCCCCCcCceeecCCc
Q psy14509 154 VVTGLSSFDIDLKVASKFFGTRFACGSSVT--GDD--EIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGDL 220 (243)
Q Consensus 154 vV~GLe~f~idlk~lAK~LkkkfACGgSV~--k~~--eI~IQGD~~~~V~e~L~ek~~gIp~~~I~~~~~k 220 (243)
.|+|.=. |+-..-....++.+++=.|.|. .++ +|.+||+-.. |.+|+.....+=|...|+.++..
T Consensus 9 ~v~G~VQ-GVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~-l~~f~~~l~~gP~~a~V~~i~~~ 77 (91)
T PRK14445 9 IVSGLVQ-GVGFRMFIDRAASELNLSGWVRNLPDGTVEIEAQGSSGM-IDELIKQAERGPSRSSVTSIMVE 77 (91)
T ss_pred EEEEEEc-CcCChHHHHHHHhhCCCEEEEEECCCCeEEEEEEECHHH-HHHHHHHHHhCCCCcEEEEEEEE
Confidence 4556554 6667778888888888889995 223 8999998633 55554443323234556655544
No 35
>PRK14440 acylphosphatase; Provisional
Probab=45.51 E-value=51 Score=25.41 Aligned_cols=63 Identities=16% Similarity=0.203 Sum_probs=36.1
Q ss_pred EEeccCCCCchHHHHHHHHccccccceEee--cCC--EEEEcCCchhHHHHhhchhCCCCCcCceeecC
Q psy14509 154 VVTGLSSFDIDLKVASKFFGTRFACGSSVT--GDD--EIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLG 218 (243)
Q Consensus 154 vV~GLe~f~idlk~lAK~LkkkfACGgSV~--k~~--eI~IQGD~~~~V~e~L~ek~~gIp~~~I~~~~ 218 (243)
.|+|.=. |+-.......++++++=.|.|. .++ +|.+||+- +.|.+|+..-..+=|...|+.++
T Consensus 8 ~v~G~VQ-GVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~-~~v~~f~~~l~~gp~~a~V~~i~ 74 (90)
T PRK14440 8 RVYGLVQ-GVGFRKFVQIHAIRLGIKGYAKNLPDGSVEVVAEGYE-EALSKLLERIKQGPPAAEVEKVD 74 (90)
T ss_pred EEEEeEe-ccCchHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCH-HHHHHHHHHHhhCCCCcEEEEEE
Confidence 3444433 4555666666677777778885 233 89999986 44555554433232333444433
No 36
>PRK14449 acylphosphatase; Provisional
Probab=44.99 E-value=47 Score=25.44 Aligned_cols=65 Identities=14% Similarity=0.162 Sum_probs=42.1
Q ss_pred EEEeccCCCCchHHHHHHHHccccccceEee--cC--CEEEEcCCchhHHHHhhchhCCCCCcCceeecCC
Q psy14509 153 TVVTGLSSFDIDLKVASKFFGTRFACGSSVT--GD--DEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGD 219 (243)
Q Consensus 153 TvV~GLe~f~idlk~lAK~LkkkfACGgSV~--k~--~eI~IQGD~~~~V~e~L~ek~~gIp~~~I~~~~~ 219 (243)
-.|+|.=. |+-.......++.+++=.|.|. .+ -+|++|||... |.+|+..-..+-|...|+.++.
T Consensus 7 i~v~G~VQ-GVGFR~fv~~~A~~lgl~G~V~N~~dG~Vei~~~G~~~~-v~~f~~~l~~~~~~a~V~~i~~ 75 (90)
T PRK14449 7 LRITGHVQ-GVGLRYSVYQKAVSLGITGYAENLYDGSVEVVAEGDEEN-IKELINFIKTGLRWARVDNVEE 75 (90)
T ss_pred EEEEEeec-CcChHHHHHHHHHHcCCEEEEEECCCCeEEEEEEeCHHH-HHHHHHHHhhCCCceEEEEEEE
Confidence 34566544 6777788888888888889985 22 48999998633 5555544433335556666553
No 37
>PRK14437 acylphosphatase; Provisional
Probab=43.18 E-value=45 Score=26.83 Aligned_cols=65 Identities=12% Similarity=0.142 Sum_probs=41.3
Q ss_pred EEeccCCCCchHHHHHHHHccccccceEee--c--CCEEEEcCCchhHHHHhhchhCCCCCcCceeecCCc
Q psy14509 154 VVTGLSSFDIDLKVASKFFGTRFACGSSVT--G--DDEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGDL 220 (243)
Q Consensus 154 vV~GLe~f~idlk~lAK~LkkkfACGgSV~--k--~~eI~IQGD~~~~V~e~L~ek~~gIp~~~I~~~~~k 220 (243)
.|+|.=. |+-...+...++.+++=.|.|. . .-+|.+||+.. .|.+|+.....+=|...|+.++-.
T Consensus 28 ~V~G~VQ-GVGFR~fv~~~A~~lgL~G~V~N~~dG~Vei~~qG~~~-~ie~f~~~L~~gP~~a~V~~i~~~ 96 (109)
T PRK14437 28 TVSGKVQ-GVFFRESVRKKAEELQLTGWVKNLSHGDVELVACGERD-SIMILTEWLWEGPPQAAVSNVNWE 96 (109)
T ss_pred EEEEecC-CcCchHHHHHHHHHhCCeEEEEECCCCCEEEEEEECHH-HHHHHHHHHHhCCCceEEEEEEEE
Confidence 4566655 6777788888888888889995 1 24899999964 344444333323344555555443
No 38
>PRK14425 acylphosphatase; Provisional
Probab=42.50 E-value=42 Score=26.08 Aligned_cols=63 Identities=11% Similarity=0.113 Sum_probs=39.2
Q ss_pred EEeccCCCCchHHHHHHHHccccccceEee--cC--CEEEEcCCch--hHHHHhhchhCCCCCcCceeecCCc
Q psy14509 154 VVTGLSSFDIDLKVASKFFGTRFACGSSVT--GD--DEIVIQGDVK--DDLFDVIPEKWPEIDEDFIEDLGDL 220 (243)
Q Consensus 154 vV~GLe~f~idlk~lAK~LkkkfACGgSV~--k~--~eI~IQGD~~--~~V~e~L~ek~~gIp~~~I~~~~~k 220 (243)
.|+|.=. |+-.....+.++.+++=.|.|. .+ -+|++||+-. +...+.|. . +=|...|+-++..
T Consensus 11 ~v~G~VQ-GVGFR~~v~~~A~~~gl~G~V~N~~dGsVei~~qG~~~~le~f~~~l~-~--gp~~a~V~~i~~~ 79 (94)
T PRK14425 11 RITGRVQ-GVGFRDWTRDEAERLGLTGWVRNESDGSVTALIAGPDSAISAMIERFR-R--GPPGASVSGVETE 79 (94)
T ss_pred EEEEeEe-cccchHHHHHHHHHhCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHh-h--CCCceEEEEEEEE
Confidence 3455544 5666777777778888889885 22 4899999755 45555554 2 3344555554443
No 39
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=42.50 E-value=37 Score=25.63 Aligned_cols=52 Identities=15% Similarity=0.250 Sum_probs=35.6
Q ss_pred EEEeccCCCCchHHHHHHHHccccccceEee--cC--CEEEEcCCc--hhHHHHhhchh
Q psy14509 153 TVVTGLSSFDIDLKVASKFFGTRFACGSSVT--GD--DEIVIQGDV--KDDLFDVIPEK 205 (243)
Q Consensus 153 TvV~GLe~f~idlk~lAK~LkkkfACGgSV~--k~--~eI~IQGD~--~~~V~e~L~ek 205 (243)
-+|+|.=. |+-.....+.++.+++=.|.|. .+ -+|++||+- .+.+.++|...
T Consensus 8 i~v~G~VQ-GVgFR~~v~~~A~~~gl~G~V~N~~dg~V~i~~~G~~~~l~~f~~~l~~g 65 (91)
T PF00708_consen 8 IIVSGRVQ-GVGFRPFVKRIARKLGLTGWVRNLPDGSVEIEAEGEEEQLEEFIKWLKKG 65 (91)
T ss_dssp EEEEEETS-SSSHHHHHHHHHHHTT-EEEEEE-TTSEEEEEEEEEHHHHHHHHHHHHHS
T ss_pred EEEEEEEC-cCChhHHHHHHHHHhCCceEEEECCCCEEEEEEEeCHHHHHHHHHHHHhC
Confidence 35677544 7788888888888888888885 22 389999974 34455555554
No 40
>PRK14423 acylphosphatase; Provisional
Probab=41.66 E-value=61 Score=25.00 Aligned_cols=63 Identities=14% Similarity=0.167 Sum_probs=40.0
Q ss_pred EeccCCCCchHHHHHHHHccccccceEee--cCC--EEEEcCCchhHHHHhhchhCCCCCcCceeecCC
Q psy14509 155 VTGLSSFDIDLKVASKFFGTRFACGSSVT--GDD--EIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGD 219 (243)
Q Consensus 155 V~GLe~f~idlk~lAK~LkkkfACGgSV~--k~~--eI~IQGD~~~~V~e~L~ek~~gIp~~~I~~~~~ 219 (243)
|+|.=. |+-..-+...++.+++=.|.|. .++ +|.+||+.. .|.+|+.....+-|...|+.++.
T Consensus 11 v~G~VQ-GVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~G~~~-~i~~f~~~l~~gp~~a~V~~v~~ 77 (92)
T PRK14423 11 VSGRVQ-GVYYRASTRDTARELGVDGWVRNLDDGRVEAVFEGPRD-AVEAMVEWCHEGSPAAVVEDVEV 77 (92)
T ss_pred EEEecC-CeeehHHHHHHHHHcCCEEEEEECCCCeEEEEEEECHH-HHHHHHHHHHhCCCceEEEEEEE
Confidence 455544 6667778888888888889995 233 899999964 35554444332434445555543
No 41
>PF10691 DUF2497: Protein of unknown function (DUF2497) ; InterPro: IPR019632 Members of this family belong to the Alphaproteobacteria. The function of the family is not known.
Probab=41.37 E-value=19 Score=27.30 Aligned_cols=17 Identities=53% Similarity=0.931 Sum_probs=15.2
Q ss_pred HHHHHHhhCcHHHHHhh
Q psy14509 67 CKVWLEKNLPEEFEKLV 83 (243)
Q Consensus 67 Ck~WL~~n~pel~~~ly 83 (243)
=++||.+|.|.+.+++.
T Consensus 47 LkeWLD~nLP~lVErlV 63 (73)
T PF10691_consen 47 LKEWLDENLPGLVERLV 63 (73)
T ss_pred HHHHHHhccHHHHHHHH
Confidence 47999999999999885
No 42
>PRK14429 acylphosphatase; Provisional
Probab=40.95 E-value=58 Score=24.97 Aligned_cols=64 Identities=17% Similarity=0.070 Sum_probs=39.3
Q ss_pred EeccCCCCchHHHHHHHHccccccceEee--cCC--EEEEcCCchhHHHHhhchhCCCCCcCceeecCCc
Q psy14509 155 VTGLSSFDIDLKVASKFFGTRFACGSSVT--GDD--EIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGDL 220 (243)
Q Consensus 155 V~GLe~f~idlk~lAK~LkkkfACGgSV~--k~~--eI~IQGD~~~~V~e~L~ek~~gIp~~~I~~~~~k 220 (243)
|+|.=. |+-.......++.+++=.|.|. .++ +|++||+-.+ |.+|+..-..+-|...|+.++..
T Consensus 8 v~G~VQ-GVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~-i~~f~~~l~~gp~~a~V~~i~~~ 75 (90)
T PRK14429 8 LTGKVQ-GVGCRRATLTKARALGVTGYVTNCEDGSVEILAQGSDPA-VDNLIAWCEVGVPCTEVLRVTVE 75 (90)
T ss_pred EEEeec-CeeeHHHHHHHHHHhCCEEEEEECCCCeEEEEEEeCHHH-HHHHHHHHhhCCCceEEEEEEEE
Confidence 455443 5666777778888888889985 233 8999998653 44444433224344456555444
No 43
>PRK14420 acylphosphatase; Provisional
Probab=40.79 E-value=66 Score=24.57 Aligned_cols=65 Identities=14% Similarity=0.051 Sum_probs=38.7
Q ss_pred EEeccCCCCchHHHHHHHHccccccceEee--cC--CEEEEcCCchhHHHHhhchhCCCCCcCceeecCCc
Q psy14509 154 VVTGLSSFDIDLKVASKFFGTRFACGSSVT--GD--DEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGDL 220 (243)
Q Consensus 154 vV~GLe~f~idlk~lAK~LkkkfACGgSV~--k~--~eI~IQGD~~~~V~e~L~ek~~gIp~~~I~~~~~k 220 (243)
.|+|.=. |+-.......++.+++=.|.|. .+ -+|++||+- +.|.+|+.....+-|...|+.++..
T Consensus 7 ~v~G~VQ-GVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~l~~~p~~a~V~~i~~~ 75 (91)
T PRK14420 7 IVDGRVQ-GVGFRYFVQMEADKRKLTGWVKNRDDGTVEIEAEGPE-EALQLFLDAIEKGSPFSKVTDVHIE 75 (91)
T ss_pred EEEEeeC-CcCChHHHHHHHHHcCCEEEEEECCCCcEEEEEEECH-HHHHHHHHHHHhCCCCCEEEEEEEE
Confidence 3445443 4555666666677777788885 22 389999974 5565555544334344456655544
No 44
>PTZ00198 60S ribosomal protein L22; Provisional
Probab=40.65 E-value=51 Score=27.51 Aligned_cols=73 Identities=19% Similarity=0.293 Sum_probs=52.5
Q ss_pred cCCCCchHHHHHHHHccccccceEee----------cCCEEEEcCC--chhHHHHhhchhC--CCCCcCceeecCCcCCC
Q psy14509 158 LSSFDIDLKVASKFFGTRFACGSSVT----------GDDEIVIQGD--VKDDLFDVIPEKW--PEIDEDFIEDLGDLKSP 223 (243)
Q Consensus 158 Le~f~idlk~lAK~LkkkfACGgSV~----------k~~eI~IQGD--~~~~V~e~L~ek~--~gIp~~~I~~~~~kKk~ 223 (243)
.++--+|+..+.+.|+.+.-..|-.. ...-|.|+.+ .+.+-..+|..+| ..-=.+||.++-..|-
T Consensus 29 veD~I~d~a~fekfL~erIKV~GK~gnLg~~V~v~~~k~ki~V~s~~~FSKRYLKYLTKKyLKK~~LRDwlRVVA~~K~- 107 (122)
T PTZ00198 29 AEDGIIDLSGFEQFLQDRIKVDGKTGNLGNKVRVSREKNKITVTTTIPFSKRYLKYLTKKYLKKKQLRDFLRVVATGKG- 107 (122)
T ss_pred ccCCcccHHHHHHHHHHhEEECCCcCccCCcEEEEEECCEEEEEecccccHHHHHHHHHHHHhhhhhhheEEEEecCCC-
Confidence 45545799999999999887766552 1245777777 7888899998877 1223578888776651
Q ss_pred ccccCcceeeeeeeecc
Q psy14509 224 TYNIGKLCFTYTYYYFM 240 (243)
Q Consensus 224 ~y~~~~~~~~~~~~~~~ 240 (243)
+|.||||-
T Consensus 108 ---------~YELRYfn 115 (122)
T PTZ00198 108 ---------TYELKYFN 115 (122)
T ss_pred ---------eEEEEEEE
Confidence 67899984
No 45
>PRK14441 acylphosphatase; Provisional
Probab=39.85 E-value=88 Score=24.18 Aligned_cols=63 Identities=14% Similarity=0.118 Sum_probs=39.7
Q ss_pred EEeccCCCCchHHHHHHHHccccccceEee--cCC--EEEEcCCch--hHHHHhhchhCCCCCcCceeecCCc
Q psy14509 154 VVTGLSSFDIDLKVASKFFGTRFACGSSVT--GDD--EIVIQGDVK--DDLFDVIPEKWPEIDEDFIEDLGDL 220 (243)
Q Consensus 154 vV~GLe~f~idlk~lAK~LkkkfACGgSV~--k~~--eI~IQGD~~--~~V~e~L~ek~~gIp~~~I~~~~~k 220 (243)
.|+|.=. |+-.......++++++=.|.|. .++ +|++|||-. +.+.++|. . +=|...|+.++-.
T Consensus 10 ~v~G~VQ-GVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~-~--gp~~a~V~~v~~~ 78 (93)
T PRK14441 10 VVSGRVQ-GVAFRQSAADEARRLGVEGWVRNLPDGRVEAEAEGERAAVGALVRWCH-A--GPPAARVDRVEVE 78 (93)
T ss_pred EEEEecC-CccchHHHHHHHhhcCcEEEEEECCCCEEEEEEEECHHHHHHHHHHHh-h--CCCCcEEEEEEEE
Confidence 4456554 6667778888888888888885 233 899999843 44444443 2 3344556555443
No 46
>PRK14427 acylphosphatase; Provisional
Probab=39.75 E-value=68 Score=24.91 Aligned_cols=65 Identities=11% Similarity=0.122 Sum_probs=40.3
Q ss_pred EEeccCCCCchHHHHHHHHccccccceEee--cCC--EEEEcCCchhHHHHhhchhCCCCCcCceeecCCc
Q psy14509 154 VVTGLSSFDIDLKVASKFFGTRFACGSSVT--GDD--EIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGDL 220 (243)
Q Consensus 154 vV~GLe~f~idlk~lAK~LkkkfACGgSV~--k~~--eI~IQGD~~~~V~e~L~ek~~gIp~~~I~~~~~k 220 (243)
.|+|.=. |+-..-+.+.++.+++=.|.|. .++ +|++||+... |.+|+.....+=|...|+.++-.
T Consensus 11 ~v~G~VQ-GVGFR~fv~~~A~~lgl~G~V~N~~dGsVei~~qG~~~~-i~~f~~~l~~~p~~a~V~~i~~~ 79 (94)
T PRK14427 11 RVFGVVQ-GVGFRYWTMRKAEELGLTGTVRNLDDGSVALVAEGTGEQ-VEKLLDWLNSDRAPGRVERVDHT 79 (94)
T ss_pred EEEEEeC-CcCChHHHHHHHHHcCCEEEEEECCCCeEEEEEEECHHH-HHHHHHHHhhCCCCcEEEEEEEE
Confidence 3455544 5667777888888888889985 223 8999999743 55555444323233445554443
No 47
>PRK14443 acylphosphatase; Provisional
Probab=37.86 E-value=66 Score=25.19 Aligned_cols=61 Identities=18% Similarity=0.249 Sum_probs=38.7
Q ss_pred EEeccCCCCchHHHHHHHHccccccceEeec----CCEEEEcCC--chhHHHHhhchhCCCCC-cCceeecC
Q psy14509 154 VVTGLSSFDIDLKVASKFFGTRFACGSSVTG----DDEIVIQGD--VKDDLFDVIPEKWPEID-EDFIEDLG 218 (243)
Q Consensus 154 vV~GLe~f~idlk~lAK~LkkkfACGgSV~k----~~eI~IQGD--~~~~V~e~L~ek~~gIp-~~~I~~~~ 218 (243)
.|+|.=. |+-....++.++.+++=.|.|.. .-+|.+||+ ..++..+.|.+ +-| ...|+.+.
T Consensus 9 ~v~G~VQ-GVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~l~~f~~~l~~---g~p~~a~V~~v~ 76 (93)
T PRK14443 9 RVTGFVQ-GVGFRYTTKHVAYKYDISGTVKNLDDGSVEIHAIAEEENLNKFIDAIKK---GPSPGCRIEHVY 76 (93)
T ss_pred EEEEeeC-CccCcHHHHHHHHHcCCEEEEEECCCCEEEEEEECCHHHHHHHHHHHhc---CCCCcEEEEEEE
Confidence 4556554 66677778888888888899951 248999999 44444444444 433 44444433
No 48
>PRK14452 acylphosphatase; Provisional
Probab=37.09 E-value=88 Score=25.14 Aligned_cols=66 Identities=9% Similarity=0.017 Sum_probs=42.2
Q ss_pred EEEeccCCCCchHHHHHHHHccccccceEee--cC--CEEEEcCCchhHHHHhhchhCCCCCcCceeecCCc
Q psy14509 153 TVVTGLSSFDIDLKVASKFFGTRFACGSSVT--GD--DEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGDL 220 (243)
Q Consensus 153 TvV~GLe~f~idlk~lAK~LkkkfACGgSV~--k~--~eI~IQGD~~~~V~e~L~ek~~gIp~~~I~~~~~k 220 (243)
-.|+|.=. |+-..-....++++++=.|.|. .+ -+|++||+.. .|.+|+.-...+=|...|+.++-.
T Consensus 24 i~V~G~VQ-GVGFR~~v~~~A~~lgL~G~V~N~~dGsVeI~~qG~~~-~ve~F~~~l~~gP~~A~V~~v~~~ 93 (107)
T PRK14452 24 FLIEGRVQ-GVGFRASCCRRALDLGLSGWVRNLSDGSVEVQAEGPPL-ALSELRAWCERGPPGARVKRVDPS 93 (107)
T ss_pred EEEEEeec-CcChhHHHHHHHHHhCCEEEEEECCCCCEEEEEEcCHH-HHHHHHHHHhcCCCCcEEEEEEEE
Confidence 45677665 6777888888888888889995 22 4899999964 455553322223344555555443
No 49
>PRK14439 acylphosphatase; Provisional
Probab=36.56 E-value=73 Score=27.80 Aligned_cols=63 Identities=13% Similarity=0.194 Sum_probs=39.6
Q ss_pred EEeccCCCCchHHHHHHHHccccccceEee--cC--CEEEEcCCc--hhHHHHhhchhCCCCCcCceeecCC
Q psy14509 154 VVTGLSSFDIDLKVASKFFGTRFACGSSVT--GD--DEIVIQGDV--KDDLFDVIPEKWPEIDEDFIEDLGD 219 (243)
Q Consensus 154 vV~GLe~f~idlk~lAK~LkkkfACGgSV~--k~--~eI~IQGD~--~~~V~e~L~ek~~gIp~~~I~~~~~ 219 (243)
.|+|.=. |+-...+.+.+..+++=.|.|. .+ -+|++||+- .++..+.|.+. +-|...|+.++-
T Consensus 80 ~VsGrVQ-GVGFR~fv~~~A~qlGLtGwVrNl~DGsVEI~aQG~ee~Ie~Fi~~L~~~--gPp~A~Ve~I~v 148 (163)
T PRK14439 80 WVYGRVQ-GVGFRYTTQYEAKKLGLTGYAKNLDDGSVEVVACGEEGQVEKLMQWLKSG--GPRSARVERVLS 148 (163)
T ss_pred EEEEeeC-CcCchHHHHHHHHHhCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHhhC--CCCCeEEEEEEE
Confidence 4456554 6677778888888888889995 22 389999986 44444455443 223344554443
No 50
>PRK14422 acylphosphatase; Provisional
Probab=36.53 E-value=85 Score=24.33 Aligned_cols=64 Identities=8% Similarity=0.080 Sum_probs=40.1
Q ss_pred EEeccCCCCchHHHHHHHHccccccceEee--cCC--EEEEcCCchhHHHHhhchhCCCCCcCceeecCC
Q psy14509 154 VVTGLSSFDIDLKVASKFFGTRFACGSSVT--GDD--EIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGD 219 (243)
Q Consensus 154 vV~GLe~f~idlk~lAK~LkkkfACGgSV~--k~~--eI~IQGD~~~~V~e~L~ek~~gIp~~~I~~~~~ 219 (243)
.|+|.=. |+-...+...++.+++=.|.|. .++ +|++||+... |.+|+.....+=|...|+.++.
T Consensus 11 ~v~G~VQ-GVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~-i~~f~~~l~~gp~~a~V~~i~~ 78 (93)
T PRK14422 11 WVHGHVQ-GVGFRWWTRSRALELGLTGYAANLADGRVQVVAEGPRAA-CEKLLQLLRGDDTPGRVDKVVE 78 (93)
T ss_pred EEEEeeC-CcCcHHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHHH-HHHHHHHHHhCCCCcEEEEEEE
Confidence 4566554 6677778888888888889985 223 8999998644 4444444332423444555443
No 51
>PRK14446 acylphosphatase; Provisional
Probab=36.04 E-value=81 Score=24.35 Aligned_cols=64 Identities=14% Similarity=0.179 Sum_probs=41.6
Q ss_pred EEeccCCCCchHHHHHHHHccccccceEee--cC--CEEEEcCCchhHHHHhhchhCCCCCcCceeecCC
Q psy14509 154 VVTGLSSFDIDLKVASKFFGTRFACGSSVT--GD--DEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGD 219 (243)
Q Consensus 154 vV~GLe~f~idlk~lAK~LkkkfACGgSV~--k~--~eI~IQGD~~~~V~e~L~ek~~gIp~~~I~~~~~ 219 (243)
.|+|.=. |+-..-+...++++++=.|.|. .+ -+|++|||-. .|.+|+.....+=|...|+.+.-
T Consensus 7 ~v~G~VQ-GVGFR~fv~~~A~~lgl~G~V~N~~dGsVei~~qG~~~-~l~~f~~~l~~gP~~a~V~~v~~ 74 (88)
T PRK14446 7 VVSGVVQ-GVWYRASTRERAVALGLVGHARNQADGSVEVVAAGSAA-ALEALEAWLWQGPPAATVAAVTR 74 (88)
T ss_pred EEEEecC-CeeEhHHHHHHHeeCCeEEEEEECCCCCEEEEEEeCHH-HHHHHHHHHhhCCCceEEEEEEE
Confidence 4566555 6777888888999999999995 12 4899999853 44444443332345555655443
No 52
>PRK14442 acylphosphatase; Provisional
Probab=35.65 E-value=81 Score=24.28 Aligned_cols=65 Identities=14% Similarity=0.054 Sum_probs=40.8
Q ss_pred EEeccCCCCchHHHHHHHHccccccceEee----cCCEEEEcCCchhHHHHhhchhCCCCCcCceeecCCc
Q psy14509 154 VVTGLSSFDIDLKVASKFFGTRFACGSSVT----GDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGDL 220 (243)
Q Consensus 154 vV~GLe~f~idlk~lAK~LkkkfACGgSV~----k~~eI~IQGD~~~~V~e~L~ek~~gIp~~~I~~~~~k 220 (243)
.|+|.=. |+-.......++++++=.|.|. +.-+|++|||... |.+|+.....+=|...|+.++-.
T Consensus 9 ~v~G~VQ-GVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~-i~~f~~~l~~gp~~a~V~~v~~~ 77 (91)
T PRK14442 9 YVGGRVQ-GVGFRQATREEADRLELDGWVRNLDDGRVEVVWEGEEDR-AKALERWLGRGPRHAEVSAVEVE 77 (91)
T ss_pred EEEEecC-CccccHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHHH-HHHHHHHHhhCCCCeEEEEEEEE
Confidence 4566655 6677777888888888889995 1248999999653 55544443323233455555443
No 53
>COG1601 GCD7 Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain [Translation, ribosomal structure and biogenesis]
Probab=34.94 E-value=34 Score=29.33 Aligned_cols=49 Identities=20% Similarity=0.395 Sum_probs=37.4
Q ss_pred EEEEeccCC----CCchHHHHHHHHccccccceEeecCCEEEEcCCchhHHHH
Q psy14509 152 VTVVTGLSS----FDIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFD 200 (243)
Q Consensus 152 VTvV~GLe~----f~idlk~lAK~LkkkfACGgSV~k~~eI~IQGD~~~~V~e 200 (243)
.|++.++.. -.-|++-+++.|++-+++.|++.+...+++||-..+....
T Consensus 43 ~Ti~~Nf~dia~~l~rDp~h~~k~l~kel~t~g~~d~~~rlvl~g~f~~~~i~ 95 (151)
T COG1601 43 RTIIRNFGDIAEALNRDPEHLVKFLKKELGTAGSIDGKGRLVLQGKFSDSEIV 95 (151)
T ss_pred hhHHHhHHHHHHHhcCCHHHHHHHHHHHhccccccCCcceEEEEecccHHHHH
Confidence 366666542 1457889999999999999999655899999987665444
No 54
>PRK14433 acylphosphatase; Provisional
Probab=34.74 E-value=73 Score=24.39 Aligned_cols=65 Identities=12% Similarity=0.096 Sum_probs=40.4
Q ss_pred EEeccCCCCchHHHHHHHHccccccceEee--cC--CEEEEcCCchhHHHHhhchhCCCCCcCceeecCCc
Q psy14509 154 VVTGLSSFDIDLKVASKFFGTRFACGSSVT--GD--DEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGDL 220 (243)
Q Consensus 154 vV~GLe~f~idlk~lAK~LkkkfACGgSV~--k~--~eI~IQGD~~~~V~e~L~ek~~gIp~~~I~~~~~k 220 (243)
.|+|.=. |+-.......++.+++=.|.|. .+ -+|.+|||-. .|.+|+..-..+=|...|+.+...
T Consensus 6 ~v~G~VQ-GVGFR~~v~~~A~~~~l~G~V~N~~dG~Vei~~~G~~~-~i~~f~~~l~~gP~~a~V~~i~~~ 74 (87)
T PRK14433 6 LVSGRVQ-GVGYRAFVQKKARELGLSGYAENLSDGRVEVVAEGPKE-ALERLLHWLRRGPRHARVEAVDVQ 74 (87)
T ss_pred EEEEeee-CcCchHHHHHHHHHcCCEEEEEECCCCCEEEEEEECHH-HHHHHHHHHhhCCCCcEEEEEEEE
Confidence 4455443 5667777788888888888885 22 3899999964 566655544323233445554443
No 55
>PRK14428 acylphosphatase; Provisional
Probab=33.41 E-value=91 Score=24.57 Aligned_cols=63 Identities=19% Similarity=0.185 Sum_probs=39.4
Q ss_pred EEeccCCCCchHHHHHHHHccccccceEee--cC--CEEEEcCCchhHHHHhhchhCCCCCcCceeecC
Q psy14509 154 VVTGLSSFDIDLKVASKFFGTRFACGSSVT--GD--DEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLG 218 (243)
Q Consensus 154 vV~GLe~f~idlk~lAK~LkkkfACGgSV~--k~--~eI~IQGD~~~~V~e~L~ek~~gIp~~~I~~~~ 218 (243)
.|+|.=. |+-..-+...++++++=.|.|. .+ -+|++||+- +.|.+||.....+=|...|+.+.
T Consensus 13 ~v~G~VQ-GVGFR~fv~~~A~~lgL~G~V~N~~dGsVei~~qG~~-~~i~~fi~~l~~gP~~a~V~~v~ 79 (97)
T PRK14428 13 VVTGLVQ-GVGFRYFTVTQARRLGVQGWVRNCRDGSVELEAQGSS-DAVQALVEQLAIGPRWSEVSHVA 79 (97)
T ss_pred EEEEecC-CccchHHHHHHHHHcCCEEEEEECCCCEEEEEEEcCH-HHHHHHHHHHhhCCCccEEEEEE
Confidence 4556554 6667777888888888889995 22 389999985 34555554433233344554443
No 56
>PRK10897 phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr); Provisional
Probab=31.40 E-value=1.4e+02 Score=22.96 Aligned_cols=40 Identities=10% Similarity=0.173 Sum_probs=33.8
Q ss_pred CchHHHHHHHHccccccceEeecCCEEEEcCCchhHHHHhhchh
Q psy14509 162 DIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEK 205 (243)
Q Consensus 162 ~idlk~lAK~LkkkfACGgSV~k~~eI~IQGD~~~~V~e~L~ek 205 (243)
.+|.+.+...+.--..||..| +|.+.|+-.++..+.|.+.
T Consensus 43 ~~~akSil~lm~Lg~~~G~~i----~v~~~G~De~~A~~~l~~~ 82 (90)
T PRK10897 43 EAEANSVIALLMLDSAKGRQI----EVEATGPQEEEALAAVIAL 82 (90)
T ss_pred EEchHhHHHHHHhCCCCCCEE----EEEEECcCHHHHHHHHHHH
Confidence 368899999999988899888 8999999888877777654
No 57
>PF00381 PTS-HPr: PTS HPr component phosphorylation site; InterPro: IPR005698 The histidine-containing phosphocarrier protein (HPr) is a central component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), which transfers metabolic carbohydrates across the cell membrane in many bacterial species [, ]. PTS catalyses the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. The general mechanism of the PTS is as follows: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred to Enzyme I (EI) of the PTS, which in turn transfers it to the phosphoryl carrier protein (HPr) [, ]. Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease complex (enzymes EII/EIII). HPr [, ] is a small cytoplasmic protein of 70 to 90 amino acid residues. In some bacteria, HPr is a domain in a larger protein that includes a EIII(Fru) (IIA) domain and in some cases also the EI domain. A conserved histidine in the N-terminal section of HPr serves as an acceptor for the phosphoryl group of EI. In the central part of HPr, there is a conserved serine which (in Gram-positive bacteria only) is phosphorylated by an ATP-dependent protein kinase; a process which probably play a regulatory role in sugar transport. The overall architecture of the HPr domain has been described as an open faced beta-sandwich in which a beta-sheet is packed against three alpha-helices. Regulatory phosphorylation at the conserved Ser residue does not appear to induce large structural changes to the HPr domain, in particular in the region of the active site [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TXE_A 1QR5_A 1RZR_S 2NZU_L 2OEN_L 2NZV_L 1Y51_B 1Y4Y_A 1Y50_A 2HPR_A ....
Probab=29.89 E-value=79 Score=23.43 Aligned_cols=40 Identities=20% Similarity=0.328 Sum_probs=30.6
Q ss_pred CchHHHHHHHHccccccceEeecCCEEEEcCCchhHHHHhhchh
Q psy14509 162 DIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEK 205 (243)
Q Consensus 162 ~idlk~lAK~LkkkfACGgSV~k~~eI~IQGD~~~~V~e~L~ek 205 (243)
.+|.+.+...+.=...+|..+ +|.++|+-.+++.+.|.+-
T Consensus 41 ~vdakSil~l~~L~~~~G~~i----~i~~~G~de~~a~~~i~~~ 80 (84)
T PF00381_consen 41 TVDAKSILGLMSLGAKKGDEI----EIEAEGEDEEEALEAIAEF 80 (84)
T ss_dssp EEETTSHHHHHHHTBSTTEEE----EEEEESTTHHHHHHHHHHH
T ss_pred eEecCCHHHHhhhhcCCCCEE----EEEEECcCHHHHHHHHHHH
Confidence 467777777777666677777 8999999988888877653
No 58
>cd00367 PTS-HPr_like Histidine-containing phosphocarrier protein (HPr)-like proteins. HPr is a central component of the bacterial phosphoenolpyruvate sugar phosphotransferase system (PTS). The PTS catalyses the phosphorylation of sugar substrates during their translocation across the cell membrane. The phosphoryl group from phosphoenolpyruvate is transferred to HPr by enzyme I (EI). Phospho-HPr then transfers the phosphoryl group to one of several sugar-specific phosphoprotein intermediates. The conserved histidine in the N-terminus of HPr serves as an acceptor for the phosphoryl group of EI. In addition to the phosphotransferase proteins HPr and E1, this family also includes the closely related Carbon Catabolite Repressor (CCR) proteins which use the same phosphorylation mechanism and interact with transcriptional regulators to control expression of genes coding for utilization of less favored carbon sources.
Probab=29.84 E-value=1.5e+02 Score=21.51 Aligned_cols=48 Identities=13% Similarity=0.279 Sum_probs=36.5
Q ss_pred eEEEEeccCCCCchHHHHHHHHccccccceEeecCCEEEEcCCchhHHHHhhch
Q psy14509 151 SVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPE 204 (243)
Q Consensus 151 ~VTvV~GLe~f~idlk~lAK~LkkkfACGgSV~k~~eI~IQGD~~~~V~e~L~e 204 (243)
.|++..+ ...+|.+.+...|.=...+|..+ +|.+.|+-.+++.+-|.+
T Consensus 28 ~v~i~~~--~~~vdakSil~i~~L~~~~G~~i----~i~~~G~de~~al~~l~~ 75 (77)
T cd00367 28 DITLRKG--GRKANAKSILGLMSLGAKQGDEI----TLSAEGEDAEEALEALAE 75 (77)
T ss_pred EEEEEEC--CEEEcHHhHHHHHHcCCCCCCEE----EEEEECcCHHHHHHHHHH
Confidence 3555444 34678999999998888888888 889999988887777654
No 59
>PRK14426 acylphosphatase; Provisional
Probab=29.84 E-value=1.1e+02 Score=23.45 Aligned_cols=65 Identities=9% Similarity=0.050 Sum_probs=39.1
Q ss_pred EEeccCCCCchHHHHHHHHccccccceEee--cC--CEEEEcCCchhHHHHhhchhCCCCCc-CceeecCCc
Q psy14509 154 VVTGLSSFDIDLKVASKFFGTRFACGSSVT--GD--DEIVIQGDVKDDLFDVIPEKWPEIDE-DFIEDLGDL 220 (243)
Q Consensus 154 vV~GLe~f~idlk~lAK~LkkkfACGgSV~--k~--~eI~IQGD~~~~V~e~L~ek~~gIp~-~~I~~~~~k 220 (243)
.|+|.=. |+-.......++.+++=.|.|. .+ -+|++||+... |.+|+.....+-|+ ..|+.++..
T Consensus 9 ~v~G~VQ-GVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~-i~~f~~~l~~g~P~~a~V~~i~~~ 78 (92)
T PRK14426 9 WVYGRVQ-GVGFRYHTQHEALKLGLTGYAKNLDDGSVEVVACGEEEQ-VEKLMEWLKEGGPRSARVDRVLTE 78 (92)
T ss_pred EEEEeeC-CcCchHHHHHHHHHhCCEEEEEECCCCcEEEEEEeCHHH-HHHHHHHHhcCCCCCeEEEEEEEE
Confidence 3455544 5667777777788888889885 22 38999999533 44444433324333 345555443
No 60
>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.
Probab=29.40 E-value=11 Score=24.96 Aligned_cols=18 Identities=44% Similarity=1.198 Sum_probs=6.8
Q ss_pred CCccccccCCChHHHHHHHHhhCc
Q psy14509 53 LPVEYCEYHPEYEKCKVWLEKNLP 76 (243)
Q Consensus 53 ~P~EYCEfg~~~~kCk~WL~~n~p 76 (243)
||-=|||| |+.||..+-|
T Consensus 1 m~ryyCdy------C~~~~~~d~~ 18 (38)
T PF06220_consen 1 MPRYYCDY------CKKYLTHDSP 18 (38)
T ss_dssp --S-B-TT------T--B-S--SH
T ss_pred CcCeeccc------ccceecCCCh
Confidence 57779999 8888855443
No 61
>PF08421 Methyltransf_13: Putative zinc binding domain; InterPro: IPR013630 This domain is found at the N terminus of bacterial methyltransferases. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=28.59 E-value=56 Score=23.46 Aligned_cols=19 Identities=26% Similarity=0.814 Sum_probs=11.9
Q ss_pred CCCCCCCCeeeEEcCCCCC
Q psy14509 35 PQEGVNYPISVLYCGNCSL 53 (243)
Q Consensus 35 ~~~~~~~P~~V~YC~vCs~ 53 (243)
......||+.|.+|..|++
T Consensus 30 ~~~e~~~pL~l~~C~~Cgl 48 (62)
T PF08421_consen 30 DEPEPRYPLDLYVCEDCGL 48 (62)
T ss_dssp -S---EEEEEEEEETTT--
T ss_pred CCCceEECCEEEECCCCCc
Confidence 3345678999999999987
No 62
>PRK14430 acylphosphatase; Provisional
Probab=28.12 E-value=1.6e+02 Score=22.78 Aligned_cols=62 Identities=18% Similarity=0.231 Sum_probs=37.2
Q ss_pred EEeccCCCCchHHHHHHHHccccccceEee--cCC--EEEEcCCch--hHHHHhhchhCCCCCcCceeecCC
Q psy14509 154 VVTGLSSFDIDLKVASKFFGTRFACGSSVT--GDD--EIVIQGDVK--DDLFDVIPEKWPEIDEDFIEDLGD 219 (243)
Q Consensus 154 vV~GLe~f~idlk~lAK~LkkkfACGgSV~--k~~--eI~IQGD~~--~~V~e~L~ek~~gIp~~~I~~~~~ 219 (243)
.|+|.=. |+-..-....++.+++=.|.|. .++ +|++||+-. +.+.++| .. +=|...|+.++.
T Consensus 9 ~v~G~VQ-GVGFR~~~~~~A~~lgl~G~VrN~~dGsVei~~qG~~~~i~~f~~~l-~~--gp~~a~V~~v~~ 76 (92)
T PRK14430 9 VAHGRVQ-GVGYRAACADAADDLGLGGWVRNRADGTVEVMASGTVRQLEALRAWM-EA--GPPAAQVTKVEV 76 (92)
T ss_pred EEEEeec-ceeeHHHHHHHHHHhCCEEEEEECCCCcEEEEEEcCHHHHHHHHHHH-Hh--CCCceEEEEEEE
Confidence 3445443 4556667777777777788885 233 899999853 4555555 33 334445555443
No 63
>cd01057 AAMH_A Aromatic and Alkene Monooxygenase Hydroxylase, subunit A, ferritin-like diiron-binding domain. Aromatic and Alkene Monooxygenase Hydroxylases, subunit A (AAMH_A). Subunit A of the soluble hydroxylase of multicomponent, aromatic and alkene monooxygenases are members of a superfamily of ferritin-like iron-storage proteins. AAMH exists as a hexamer (an alpha2-beta2-gamma2 homodimer) with each alpha-subunit housing one nonheme diiron center embedded in a four-helix bundle. The N-terminal domain of the alpha- and noncatalytic beta-subunits possess nearly identical folds, however, the beta-subunit lacks critical diiron ligands and a C-terminal domain found in the alpha-subunit. Methane monooxygenase is a multicomponent enzyme found in methanotrophic bacteria that catalyzes the hydroxylation of methane and higher alkenes (as large as octane). Phenol monooxygenase, found in a diverse group of bacteria, catalyses the hydroxylation of phenol, chloro- and methyl-phenol and naphtho
Probab=26.06 E-value=48 Score=33.12 Aligned_cols=33 Identities=30% Similarity=0.814 Sum_probs=24.4
Q ss_pred EcCCCCCCcccc-----------ccCC-----ChHHHHHHHHhhCcHHHH
Q psy14509 47 YCGNCSLPVEYC-----------EYHP-----EYEKCKVWLEKNLPEEFE 80 (243)
Q Consensus 47 YC~vCs~P~EYC-----------Efg~-----~~~kCk~WL~~n~pel~~ 80 (243)
-|+||.||..+| ||.+ +.+-| .|.=++.||-|.
T Consensus 382 ~c~vC~~p~~~~~~~~~~~~~~~ey~G~~y~FCS~~C-~~~F~~ePerY~ 430 (465)
T cd01057 382 LCNVCQVPCVFTEDLTAEAPRVLEYNGRKYHFCSEGC-EWIFEQEPERYA 430 (465)
T ss_pred CCCCCCCeeccccCcccccceEEEECCEEEEecCHHH-HHHHHHCHHHHh
Confidence 799999999987 3333 24568 667777899985
No 64
>KOG0023|consensus
Probab=24.77 E-value=67 Score=31.29 Aligned_cols=12 Identities=33% Similarity=0.974 Sum_probs=10.4
Q ss_pred CCeeeEEcCCCC
Q psy14509 41 YPISVLYCGNCS 52 (243)
Q Consensus 41 ~P~~V~YC~vCs 52 (243)
.-++|+|||||.
T Consensus 39 v~vkI~~cGICh 50 (360)
T KOG0023|consen 39 VLVKIEYCGVCH 50 (360)
T ss_pred EEEEEEEEeccc
Confidence 468999999996
No 65
>PF09183 DUF1947: Domain of unknown function (DUF1947); InterPro: IPR015266 Members of this entry are a set of hypothetical archaeal proteins. Their exact function has not, as yet, been defined. ; PDB: 1Q7H_A.
Probab=23.69 E-value=32 Score=25.81 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=14.7
Q ss_pred hHHHHhhchhCC-CCCcCceeecCCcCCCccc
Q psy14509 196 DDLFDVIPEKWP-EIDEDFIEDLGDLKSPTYN 226 (243)
Q Consensus 196 ~~V~e~L~ek~~-gIp~~~I~~~~~kKk~~y~ 226 (243)
.++.+-+.++|. +++.+.|++...+|..-|=
T Consensus 11 k~~~~k~~~~ygIdi~~~~vEI~~~kk~~~yy 42 (65)
T PF09183_consen 11 KEIKEKIKEKYGIDISGEKVEIGKEKKFSIYY 42 (65)
T ss_dssp HHHHHHHHT-TT---TT---EEEE-SS-EEEE
T ss_pred HHHHHHHHHHhCcCCCccceeeeeccceEEEE
Confidence 345555566662 3456789998888887664
No 66
>PRK13780 phosphocarrier protein HPr; Provisional
Probab=23.50 E-value=2e+02 Score=22.04 Aligned_cols=40 Identities=20% Similarity=0.302 Sum_probs=32.7
Q ss_pred CchHHHHHHHHccccccceEeecCCEEEEcCCchhHHHHhhchh
Q psy14509 162 DIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEK 205 (243)
Q Consensus 162 ~idlk~lAK~LkkkfACGgSV~k~~eI~IQGD~~~~V~e~L~ek 205 (243)
.+|.+.+...|.-...+|..| +|.+.|+-.++..+.|.+-
T Consensus 41 ~vdakSil~lm~Lg~~~G~~v----~i~a~G~De~~Al~~l~~~ 80 (88)
T PRK13780 41 SVNLKSIMGVMSLGVGQGADI----TISAEGADAADAIAAIEET 80 (88)
T ss_pred EEechhHHHHHhcCCCCCCEE----EEEEeCcCHHHHHHHHHHH
Confidence 467888999888888888888 8999999888877666554
No 67
>COG3827 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.24 E-value=84 Score=28.81 Aligned_cols=17 Identities=53% Similarity=0.931 Sum_probs=15.5
Q ss_pred HHHHHHhhCcHHHHHhh
Q psy14509 67 CKVWLEKNLPEEFEKLV 83 (243)
Q Consensus 67 Ck~WL~~n~pel~~~ly 83 (243)
-|+||.+|.|-|.++|.
T Consensus 202 LqdWLDkNLPtLVErLV 218 (231)
T COG3827 202 LQDWLDKNLPTLVERLV 218 (231)
T ss_pred HHHHHHccchHHHHHHH
Confidence 58999999999999985
No 68
>PRK05412 putative nucleotide-binding protein; Reviewed
Probab=23.07 E-value=1.5e+02 Score=25.81 Aligned_cols=61 Identities=16% Similarity=0.314 Sum_probs=41.6
Q ss_pred CceEEEEeccCCCCchHHHHHHHHcc-ccccceEeecCCEEEEcCCchhH---HHHhhchh-CCCCCcCc
Q psy14509 149 KKSVTVVTGLSSFDIDLKVASKFFGT-RFACGSSVTGDDEIVIQGDVKDD---LFDVIPEK-WPEIDEDF 213 (243)
Q Consensus 149 rK~VTvV~GLe~f~idlk~lAK~Lkk-kfACGgSV~k~~eI~IQGD~~~~---V~e~L~ek-~~gIp~~~ 213 (243)
|..|++..|++.- ..+++.|.++. ++-.-+++ -+++|-|.|-.+|+ ++.+|.+. | ++|-.+
T Consensus 91 rq~i~lk~GI~~e--~AKkIvK~IKd~klKVqa~I-QGd~vRVtgKkrDDLQ~viallk~~d~-~~pLQF 156 (161)
T PRK05412 91 KQEVKLKQGIDQE--LAKKIVKLIKDSKLKVQAQI-QGDQVRVTGKKRDDLQAVIALLRKADL-GQPLQF 156 (161)
T ss_pred EEEEehhhccCHH--HHHHHHHHHHhcCCceeEEe-cCcEEEEecCCHhHHHHHHHHHHhccC-CCCcee
Confidence 4678899999873 46777777664 33466777 77899999988775 45566553 3 555543
No 69
>PRK14448 acylphosphatase; Provisional
Probab=22.97 E-value=1.9e+02 Score=22.14 Aligned_cols=64 Identities=13% Similarity=0.025 Sum_probs=38.8
Q ss_pred EEEeccCCCCchHHHHHHHHccccccceEee--cC--CEEEEcCCchhHHHHhhchhCCCCCcCceeecC
Q psy14509 153 TVVTGLSSFDIDLKVASKFFGTRFACGSSVT--GD--DEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLG 218 (243)
Q Consensus 153 TvV~GLe~f~idlk~lAK~LkkkfACGgSV~--k~--~eI~IQGD~~~~V~e~L~ek~~gIp~~~I~~~~ 218 (243)
-.|+|.=. |+-.....+.++.+++=.|.|. .+ -+|.+||+-.+ |.+|+..-..+=|...|+.++
T Consensus 6 ~~v~G~VQ-GVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~G~~~~-v~~f~~~l~~gp~~a~V~~v~ 73 (90)
T PRK14448 6 FIVYGHVQ-GVGFRYFTWQEATKIGIKGYVKNRPDGSVEVVAVGSDAQ-IAAFRDWLQHGPPTAVVCNVI 73 (90)
T ss_pred EEEEEeec-CcchHHHHHHHHHHhCCEEEEEECCCCCEEEEEEeCHHH-HHHHHHHHHhCCCceEEEEEE
Confidence 34566554 6677777888888888888885 22 38999998632 444443322132334555443
No 70
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=20.33 E-value=34 Score=22.26 Aligned_cols=11 Identities=36% Similarity=1.041 Sum_probs=5.2
Q ss_pred EcCCCCCCccc
Q psy14509 47 YCGNCSLPVEY 57 (243)
Q Consensus 47 YC~vCs~P~EY 57 (243)
||+.|+-|.|+
T Consensus 2 fC~~CG~~l~~ 12 (34)
T PF14803_consen 2 FCPQCGGPLER 12 (34)
T ss_dssp B-TTT--B-EE
T ss_pred ccccccChhhh
Confidence 78888887654
Done!