Query psy14509
Match_columns 243
No_of_seqs 206 out of 877
Neff 4.6
Searched_HMMs 29240
Date Fri Aug 16 21:43:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14509.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14509hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xzm_F EIF1; ribosome, transla 99.9 6.8E-24 2.3E-28 167.1 8.0 79 136-218 16-100 (101)
2 2ogh_A Eukaryotic translation 99.9 4.1E-23 1.4E-27 164.2 9.3 82 134-218 21-107 (108)
3 1d1r_A Hypothetical 11.4 KD pr 99.9 3.3E-22 1.1E-26 161.1 7.1 80 136-219 30-111 (116)
4 2if1_A EIF1, SUI1; translation 99.9 3.5E-22 1.2E-26 162.9 5.4 82 134-218 39-125 (126)
5 2e9h_A EIF-5, eukaryotic trans 88.5 0.2 7E-06 41.8 2.3 69 136-205 25-98 (157)
6 1nee_A EIF-2-beta, probable tr 87.3 0.14 4.8E-06 41.9 0.6 65 136-206 30-98 (138)
7 2d74_B Translation initiation 84.1 0.55 1.9E-05 38.8 2.6 64 136-205 32-99 (148)
8 2g2k_A EIF-5, eukaryotic trans 81.7 0.26 8.8E-06 41.7 -0.3 70 136-206 18-92 (170)
9 1k8b_A EIF-2-beta, probable tr 80.6 0.79 2.7E-05 31.6 2.0 45 146-193 4-52 (52)
10 3cw2_K Translation initiation 78.2 0.085 2.9E-06 43.2 -4.2 57 148-206 39-99 (139)
11 1gxu_A Hydrogenase maturation 63.7 17 0.00059 26.9 6.0 60 154-217 12-74 (91)
12 2fhm_A Probable acylphosphatas 57.2 23 0.00078 26.0 5.6 62 154-219 7-74 (91)
13 2npb_A Selenoprotein W; struct 56.0 4 0.00014 31.1 1.3 29 42-77 4-32 (96)
14 2ljk_A Protein C17ORF37; MIEN1 53.1 13 0.00043 29.5 3.8 12 42-53 26-37 (117)
15 1urr_A CG18505 protein; acylph 48.0 32 0.0011 25.8 5.3 63 154-219 16-84 (102)
16 2vh7_A Acylphosphatase-1; hydr 45.1 37 0.0013 25.3 5.2 62 154-218 13-80 (99)
17 2ojl_A Hypothetical protein; B 41.1 11 0.00036 29.6 1.6 12 43-54 11-22 (108)
18 2oka_A Hypothetical protein; P 39.8 11 0.00039 29.1 1.6 13 43-55 8-20 (104)
19 2p0g_A Selenoprotein W-related 39.3 12 0.0004 29.1 1.6 13 43-55 6-18 (105)
20 3o70_A PHD finger protein 13; 39.2 1.8 6.3E-05 30.8 -2.9 33 39-73 13-45 (68)
21 2lxf_A Uncharacterized protein 39.0 29 0.001 27.4 3.9 60 155-218 40-105 (121)
22 1weu_A Inhibitor of growth fam 37.9 8.3 0.00028 29.1 0.5 30 39-71 30-62 (91)
23 3dex_A SAV_2001; alpha-beta pr 37.3 13 0.00045 29.0 1.6 13 43-55 15-27 (107)
24 3trg_A Acylphosphatase; fatty 36.8 62 0.0021 24.2 5.3 63 154-218 17-83 (98)
25 2fa8_A Hypothetical protein AT 36.6 14 0.00047 28.6 1.6 11 43-53 10-20 (105)
26 1ulr_A Putative acylphosphatas 34.5 87 0.003 22.7 5.6 61 154-218 7-73 (88)
27 1aps_A Acylphosphatase; hydrol 30.5 34 0.0012 25.4 2.9 50 154-204 12-67 (98)
28 2gv1_A Probable acylphosphatas 29.5 51 0.0018 24.2 3.7 48 154-202 9-62 (92)
29 3lqh_A Histone-lysine N-methyl 29.0 4.8 0.00016 34.0 -2.4 30 46-75 3-35 (183)
30 2bjd_A Acylphosphatase; hypert 28.1 80 0.0027 23.7 4.6 49 154-203 19-73 (101)
31 1s3a_A NADH-ubiquinone oxidore 27.8 24 0.00082 26.5 1.6 25 55-79 24-48 (102)
32 1wee_A PHD finger family prote 27.8 4.1 0.00014 28.8 -2.6 31 42-73 13-43 (72)
33 2dsm_A Hypothetical protein YQ 25.9 41 0.0014 24.6 2.4 36 177-213 24-62 (72)
34 3kqi_A GRC5, PHD finger protei 25.5 5.4 0.00018 28.5 -2.4 31 42-73 7-37 (75)
35 1w2i_A Acylphosphatase; hydrol 25.2 1.1E+02 0.0038 22.3 4.8 61 154-218 9-75 (91)
36 1we9_A PHD finger family prote 25.0 4.7 0.00016 27.6 -2.7 30 45-74 6-35 (64)
37 1wep_A PHF8; structural genomi 21.0 10 0.00035 27.2 -1.6 31 43-74 10-40 (79)
38 1wew_A DNA-binding family prot 20.9 10 0.00036 27.2 -1.6 26 42-71 13-42 (78)
39 2lvf_A 2S albumin; allergen, c 20.3 30 0.001 26.8 0.8 15 50-64 97-111 (114)
No 1
>2xzm_F EIF1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_F
Probab=99.89 E-value=6.8e-24 Score=167.08 Aligned_cols=79 Identities=20% Similarity=0.427 Sum_probs=74.0
Q ss_pred CCcEEEEEeeeCCCceEEEEeccCCCCchHHHHHHHHccccccceEeecCC-----EEEEcCCchhHHHHhhchhCCCC-
Q psy14509 136 PKQVCVSRAPRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDD-----EIVIQGDVKDDLFDVIPEKWPEI- 209 (243)
Q Consensus 136 ~~~I~I~~e~R~krK~VTvV~GLe~f~idlk~lAK~LkkkfACGgSV~k~~-----eI~IQGD~~~~V~e~L~ek~~gI- 209 (243)
.+.|+|++++|++||.||+|+||+ +++|+++|||.|+++|||||||. ++ +|+|||||+++|.++|.++ |+
T Consensus 16 ~~~v~I~~~~R~g~K~VT~V~Gl~-~~~dlk~laK~lKkk~acggsV~-~~~~~g~~I~iQGD~r~~v~~~L~~~--G~~ 91 (101)
T 2xzm_F 16 QTHIHIRVEQRRGRKCFTTVEGIP-PEFDYEKIMKYWKKWLSCNATIV-EEDEGKKVIKLNGDHRNQIQQFLSEE--GIA 91 (101)
T ss_dssp SCCEEEEEEEEETTEEEEEEECCC-TTSCTHHHHHHHHHHHTSCCCEE-ECSTTCEEEEEESCCHHHHHHHHHHH--SSS
T ss_pred CCeEEEEEEeccCCccEEEEecCC-CchhHHHHHHHHHHHhcCCeEEe-cCCCCceEEEEeCcHHHHHHHHHHHc--CCC
Confidence 678999999999999999999999 99999999999999999999995 33 9999999999999999998 66
Q ss_pred CcCceeecC
Q psy14509 210 DEDFIEDLG 218 (243)
Q Consensus 210 p~~~I~~~~ 218 (243)
|+++|++.+
T Consensus 92 ~~~~I~vhg 100 (101)
T 2xzm_F 92 AVDNITIHG 100 (101)
T ss_dssp CTTTEEECC
T ss_pred CHHHEEEcC
Confidence 999999865
No 2
>2ogh_A Eukaryotic translation initiation factor EIF-1; alpha-beta protein; NMR {Saccharomyces cerevisiae}
Probab=99.88 E-value=4.1e-23 Score=164.17 Aligned_cols=82 Identities=23% Similarity=0.423 Sum_probs=75.3
Q ss_pred CCCCcEEEEEeeeCCCceEEEEeccCCCCchHHHHHHHHccccccceEeecCC-----EEEEcCCchhHHHHhhchhCCC
Q psy14509 134 EVPKQVCVSRAPRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDD-----EIVIQGDVKDDLFDVIPEKWPE 208 (243)
Q Consensus 134 ~~~~~I~I~~e~R~krK~VTvV~GLe~f~idlk~lAK~LkkkfACGgSV~k~~-----eI~IQGD~~~~V~e~L~ek~~g 208 (243)
+..+.|+|++++|++||.||+|+||+. ++|+++|||.|+++|||||||. ++ +|+|||||+++|.++|.++. .
T Consensus 21 ~~~~~V~Ir~~~R~g~K~VT~V~Gl~~-~~dlk~lak~lKkk~acggsV~-~~~~~g~~I~iQGD~r~~v~~~L~~~g-~ 97 (108)
T 2ogh_A 21 ATSNYIHIRIQQRNGRKTLTTVQGVPE-EYDLKRILKVLKKDFACNGNIV-KDPEMGEIIQLQGDQRAKVCEFMISQL-G 97 (108)
T ss_dssp CCSCSEEEEEECCSSSCCEEEEECCCT-TSCHHHHHHHHHHHHCCCEEEE-CCTTSSCEEEEESSCHHHHHHHHHHHH-T
T ss_pred CCCCeEEEEEEEccCCceEEEEeCCCc-chhHHHHHHHHHHHhcCceEEe-cCCCCceEEEEcCCHHHHHHHHHHHcC-C
Confidence 357899999999999999999999997 8999999999999999999995 44 99999999999999999994 5
Q ss_pred CCcCceeecC
Q psy14509 209 IDEDFIEDLG 218 (243)
Q Consensus 209 Ip~~~I~~~~ 218 (243)
+|+++|++.+
T Consensus 98 ~~~~~I~vhg 107 (108)
T 2ogh_A 98 LQKKNIKIHG 107 (108)
T ss_dssp SCCSCEEECC
T ss_pred CCHHHEEEcC
Confidence 6999999875
No 3
>1d1r_A Hypothetical 11.4 KD protein YCIH in PYRF-OSMB intergenic region; alpha-beta plait, open-faced beta sandwich, ferredoxin-like fold; NMR {Escherichia coli} SCOP: d.64.1.1
Probab=99.86 E-value=3.3e-22 Score=161.08 Aligned_cols=80 Identities=26% Similarity=0.383 Sum_probs=74.3
Q ss_pred CCcEEEEEeeeCCC--ceEEEEeccCCCCchHHHHHHHHccccccceEeecCCEEEEcCCchhHHHHhhchhCCCCCcCc
Q psy14509 136 PKQVCVSRAPRGKK--KSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKWPEIDEDF 213 (243)
Q Consensus 136 ~~~I~I~~e~R~kr--K~VTvV~GLe~f~idlk~lAK~LkkkfACGgSV~k~~eI~IQGD~~~~V~e~L~ek~~gIp~~~ 213 (243)
.+.|+|+++ |++| |.||+|+||+.|++|+++|||.|+++||||||| ++++|+|||||+++|.++|.++ |++.++
T Consensus 30 ~~~V~I~~e-r~gR~GK~VT~V~Gl~~~~~dlk~laK~LKkk~acgGtV-k~~~IeiQGD~r~~i~~~L~~~--G~~vk~ 105 (116)
T 1d1r_A 30 DGVVRIQRQ-TSGRKGKGVCLITGVDLDDAELTKLAAELKKKCGCGGAV-KDGVIEIQGDKRDLLKSLLEAK--GMKVKL 105 (116)
T ss_dssp CCEEEEEEC-CCSSSSCCCEEEECCCSCHHHHHHHHHHHTTSSSSCCBC-CSSCEEECSCCHHHHHHHHHHH--TCEECC
T ss_pred CCeEEEEEE-eCCCCCCeEEEEeCCcCchhhHHHHHHHHHHHhcCCcEE-cCCEEEEeCcHHHHHHHHHHHc--CCCcce
Confidence 688999998 7666 999999999999999999999999999999999 7899999999999999999999 899999
Q ss_pred eeecCC
Q psy14509 214 IEDLGD 219 (243)
Q Consensus 214 I~~~~~ 219 (243)
|+.++-
T Consensus 106 i~~~~~ 111 (116)
T 1d1r_A 106 AGGLEH 111 (116)
T ss_dssp CCCCC-
T ss_pred eccccc
Confidence 988763
No 4
>2if1_A EIF1, SUI1; translation initiation factor; NMR {Homo sapiens} SCOP: d.64.1.1
Probab=99.85 E-value=3.5e-22 Score=162.94 Aligned_cols=82 Identities=26% Similarity=0.461 Sum_probs=74.6
Q ss_pred CCCCcEEEEEeeeCCCceEEEEeccCCCCchHHHHHHHHccccccceEeecC----CEEEEcCCchhHHHHhhchhCCCC
Q psy14509 134 EVPKQVCVSRAPRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGD----DEIVIQGDVKDDLFDVIPEKWPEI 209 (243)
Q Consensus 134 ~~~~~I~I~~e~R~krK~VTvV~GLe~f~idlk~lAK~LkkkfACGgSV~k~----~eI~IQGD~~~~V~e~L~ek~~gI 209 (243)
+..+.|+|++++|+|||.||+|+||+. ++|+++|||.|+++|||||||.++ ++|+|||||+++|.++|.++ |+
T Consensus 39 g~~~~V~Ir~~~R~grK~VT~V~GL~~-~~dlk~laK~LKkk~acgGtVk~~~e~g~~I~IQGD~r~~I~~~L~~~--G~ 115 (126)
T 2if1_A 39 GTEDYIHIRIQQRNGRKTLTTVQGIAD-DYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEI--GL 115 (126)
T ss_dssp SCTTCEECCCCCSSSSCCBCEEBSCCT-TSCHHHHHTTHHHHTCCCEEEECCTTTSSEEEESBCCHHHHHHHHHHH--TS
T ss_pred CCCCeEEEEEEeecCCccEEEEeCCCC-chhHHHHHHHHHHHhcCCeEEecCCCCccEEEEcCCHHHHHHHHHHHc--CC
Confidence 357889999999999999999999998 899999999999999999999532 49999999999999999998 67
Q ss_pred -CcCceeecC
Q psy14509 210 -DEDFIEDLG 218 (243)
Q Consensus 210 -p~~~I~~~~ 218 (243)
++++|++.+
T Consensus 116 ~~~~~I~vhg 125 (126)
T 2if1_A 116 AKDDQLKVHG 125 (126)
T ss_dssp SCTTTEECCC
T ss_pred CChhhEEeeC
Confidence 789998764
No 5
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.54 E-value=0.2 Score=41.84 Aligned_cols=69 Identities=12% Similarity=0.275 Sum_probs=52.7
Q ss_pred CCcEEEEEeeeCCCceEEEEeccCCC----CchHHHHHHHHccccccceEee-cCCEEEEcCCchhHHHHhhchh
Q psy14509 136 PKQVCVSRAPRGKKKSVTVVTGLSSF----DIDLKVASKFFGTRFACGSSVT-GDDEIVIQGDVKDDLFDVIPEK 205 (243)
Q Consensus 136 ~~~I~I~~e~R~krK~VTvV~GLe~f----~idlk~lAK~LkkkfACGgSV~-k~~eI~IQGD~~~~V~e~L~ek 205 (243)
.+++.+.++.++.+ .-|+|.+|... .=+++-+.|.|..-+++.|++. +++..+|+|.|.....+-+...
T Consensus 25 mP~~~v~~eG~gnG-~KTvi~Nf~dIak~L~R~p~hv~ky~~~ELGt~g~id~~~~rlii~G~~~~~~i~~~L~~ 98 (157)
T 2e9h_A 25 MPRLIAKVEGKGNG-IKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVKNDRYIVNGSHEANKLQDMLDG 98 (157)
T ss_dssp EECCCEEECSSSSS-CEEEETTHHHHHHHTTSCTHHHHHHHHHHHTCCEEEETTTTEEEEEBCCCHHHHHHHHHH
T ss_pred cCCCeEEEeccCCc-cEEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeecCCCCEEEEEeeeCHHHHHHHHHH
Confidence 45566777777644 46888888653 3468889999999999999997 5899999999887666555443
No 6
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=87.30 E-value=0.14 Score=41.89 Aligned_cols=65 Identities=12% Similarity=0.190 Sum_probs=48.1
Q ss_pred CCcEEEEEeeeCCCceEEEEeccCCC----CchHHHHHHHHccccccceEeecCCEEEEcCCchhHHHHhhchhC
Q psy14509 136 PKQVCVSRAPRGKKKSVTVVTGLSSF----DIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKW 206 (243)
Q Consensus 136 ~~~I~I~~e~R~krK~VTvV~GLe~f----~idlk~lAK~LkkkfACGgSV~k~~eI~IQGD~~~~V~e~L~ek~ 206 (243)
.+++.+.++ |+| |+|.+|... .=+++-+.|.|..-+|+.|++. ++..+|+|.|...-.+-+...|
T Consensus 30 mp~~~v~~e---G~k--Tvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id-~~rlii~G~~~~~~i~~~L~~y 98 (138)
T 1nee_A 30 VPKAYSVIQ---GNR--TFIQNFREVADALNRDPQHLLKFLLRELGTAGNLE-GGRAILQGKFTHFLINERIEDY 98 (138)
T ss_dssp CSCCCCCEE---TTE--EEESCHHHHHHHHCSSHHHHHHHHHHHCCSCCCCB-TTTEEEESSCSSSHHHHHHHHH
T ss_pred cCCCeEEEE---CCc--EEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeec-CCEEEEEeeeCHHHHHHHHHHH
Confidence 344444444 345 999999764 3468899999999999999995 8899999998776555444443
No 7
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=84.13 E-value=0.55 Score=38.82 Aligned_cols=64 Identities=19% Similarity=0.230 Sum_probs=48.3
Q ss_pred CCcEEEEEeeeCCCceEEEEeccCCC----CchHHHHHHHHccccccceEeecCCEEEEcCCchhHHHHhhchh
Q psy14509 136 PKQVCVSRAPRGKKKSVTVVTGLSSF----DIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEK 205 (243)
Q Consensus 136 ~~~I~I~~e~R~krK~VTvV~GLe~f----~idlk~lAK~LkkkfACGgSV~k~~eI~IQGD~~~~V~e~L~ek 205 (243)
.+++.+.++. +| |+|.+|... .=+++-+.|.|..-+|+.|++. ++..+|+|.+.....+-+...
T Consensus 32 mP~~~v~~eG---kK--Tvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id-~~rlii~G~~~~~~i~~~L~~ 99 (148)
T 2d74_B 32 VPGALVTIEG---NK--TIIENFKDIADALNRDPQHLLKFLLREIATAGTLE-GRRVVLQGRFTPYLIANKLKK 99 (148)
T ss_dssp CCCCCEEEET---TE--EEESCHHHHHHHHTCCSHHHHHHHHHHSCCCEEEE-TTEEEESSCCCHHHHHHHHHH
T ss_pred cCCCeEEEec---Ce--EEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeec-CCEEEEEeeeCHHHHHHHHHH
Confidence 4555555554 33 999998754 3458889999999999999995 899999999877666555443
No 8
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=81.71 E-value=0.26 Score=41.73 Aligned_cols=70 Identities=11% Similarity=0.278 Sum_probs=51.5
Q ss_pred CCcEEEEEeeeCCCceEEEEeccCCC----CchHHHHHHHHccccccceEeec-CCEEEEcCCchhHHHHhhchhC
Q psy14509 136 PKQVCVSRAPRGKKKSVTVVTGLSSF----DIDLKVASKFFGTRFACGSSVTG-DDEIVIQGDVKDDLFDVIPEKW 206 (243)
Q Consensus 136 ~~~I~I~~e~R~krK~VTvV~GLe~f----~idlk~lAK~LkkkfACGgSV~k-~~eI~IQGD~~~~V~e~L~ek~ 206 (243)
.+++.+.++.++.+ .-|+|.+|... .=+++-+.|.|..-+|+.|++.+ ++..+|+|.|....++-|...|
T Consensus 18 mP~~~v~~EG~gnG-~KTvi~Nf~dIak~L~R~p~hv~kyf~~ELGt~g~id~~~~rliinG~~~~~~i~~~L~~y 92 (170)
T 2g2k_A 18 MPRLIAKVEGKGNG-IKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVKNDRYIVNGSHEANKLQDMLDGF 92 (170)
T ss_dssp CCCCCCEEESCTTT-CEEECSSHHHHHHHHSSCCTTTHHHHHHHTTCCCEECTTTCCEEEEBCCCHHHHHHHHHHH
T ss_pred CCCCeEEEeccCCc-cEEEEEcHHHHHHHhCCCHHHHHHHHHHHhCCceeecCCCCEEEEEeeeCHHHHHHHHHHH
Confidence 56777888888644 45778777643 22466677888999999999963 7899999998876666555443
No 9
>1k8b_A EIF-2-beta, probable translation initiation factor 2 beta subunit; N-terminal domain, AIF2 subunit beta; NMR {Methanocaldococcus jannaschii} SCOP: d.241.1.1
Probab=80.60 E-value=0.79 Score=31.55 Aligned_cols=45 Identities=9% Similarity=0.245 Sum_probs=36.6
Q ss_pred eCCCceEEEEeccCCC----CchHHHHHHHHccccccceEeecCCEEEEcCC
Q psy14509 146 RGKKKSVTVVTGLSSF----DIDLKVASKFFGTRFACGSSVTGDDEIVIQGD 193 (243)
Q Consensus 146 R~krK~VTvV~GLe~f----~idlk~lAK~LkkkfACGgSV~k~~eI~IQGD 193 (243)
|-|+| |+|.+|... .=+++-+.|.|.+-+++.|++. ++..+|+|.
T Consensus 4 ~eG~k--Tvi~Nf~~Ia~~L~R~p~hv~ky~~~ELGt~g~id-~~rlii~G~ 52 (52)
T 1k8b_A 4 IEGNR--TIIRNFRELAKAVNRDEEFFAKYLLKETGSAGNLE-GGRLILQRR 52 (52)
T ss_dssp EETTE--EEECCHHHHHHHHHTCHHHHHHHHHHHHSSEEEEE-TTEEEEECC
T ss_pred EEcCe--EEEECHHHHHHHHCCCHHHHHHHHHHHhCCCeeec-CCEEEEeCC
Confidence 44556 999998754 2358889999999999999995 889999984
No 10
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=78.24 E-value=0.085 Score=43.24 Aligned_cols=57 Identities=19% Similarity=0.434 Sum_probs=45.9
Q ss_pred CCceEEEEeccCCC----CchHHHHHHHHccccccceEeecCCEEEEcCCchhHHHHhhchhC
Q psy14509 148 KKKSVTVVTGLSSF----DIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVIPEKW 206 (243)
Q Consensus 148 krK~VTvV~GLe~f----~idlk~lAK~LkkkfACGgSV~k~~eI~IQGD~~~~V~e~L~ek~ 206 (243)
|+| |+|.+|... .=+++-+.|.|..-+|+.|++.+++..+|+|.|...-.+-+...|
T Consensus 39 G~k--Tvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id~~~rlii~G~~~~~~i~~~L~~y 99 (139)
T 3cw2_K 39 GNT--TIIRNFAEYCDRIRREDKICMKYLLKELAAPGNVDDKGELVIQGKFSSQVINTLMERF 99 (139)
T ss_dssp SSS--CCCSCSSSTTTTTSSCCTTTHHHHSCCSSCCCCCSSSCCCTTTCSCCSCCSCSTTTTT
T ss_pred CCe--EEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceEECCCCeEEEEeeeCHHHHHHHHHHH
Confidence 445 999999875 346888999999999999999658899999999876666555554
No 11
>1gxu_A Hydrogenase maturation protein HYPF; phosphatase, acylphosphatases, hydrogenase maturations, fibril formation, zinc-finger, complete proteome; 1.27A {Escherichia coli} SCOP: d.58.10.1 PDB: 1gxt_A
Probab=63.73 E-value=17 Score=26.89 Aligned_cols=60 Identities=13% Similarity=0.227 Sum_probs=43.9
Q ss_pred EEeccCCCCchHHHHHHHHccccccceEee--cCC-EEEEcCCchhHHHHhhchhCCCCCcCceeec
Q psy14509 154 VVTGLSSFDIDLKVASKFFGTRFACGSSVT--GDD-EIVIQGDVKDDLFDVIPEKWPEIDEDFIEDL 217 (243)
Q Consensus 154 vV~GLe~f~idlk~lAK~LkkkfACGgSV~--k~~-eI~IQGD~~~~V~e~L~ek~~gIp~~~I~~~ 217 (243)
.|+|.=. |+-..-....++.+++-.|.|. .++ +|++||+- +.+.++|....| |...|+.+
T Consensus 12 ~V~G~VQ-GVGFR~~v~~~A~~lgL~G~VrN~~dGVei~~eG~~-~~f~~~l~~~~P--~~A~V~~v 74 (91)
T 1gxu_A 12 RIRGKVQ-GVGFRPFVWQLAQQLNLHGDVCNDGDGVEVRLREDP-EVFLVQLYQHCP--PLARIDSV 74 (91)
T ss_dssp EEEEECS-SSSHHHHHHHHHHHHTCCEEEEECSSSEEEEESSCC-HHHHHHHHHTCC--TTCEEEEE
T ss_pred EEEEeeC-CcCHHHHHHHHHHHcCCeEEEEECCCcEEEEEEECH-HHHHHHHhhCCC--CCEEEEEE
Confidence 4777655 7778888888888888899995 233 89999999 888888877532 33444444
No 12
>2fhm_A Probable acylphosphatase; hydrolase; NMR {Bacillus subtilis} PDB: 2hlt_A 2hlu_A 3br8_A
Probab=57.15 E-value=23 Score=26.03 Aligned_cols=62 Identities=13% Similarity=0.200 Sum_probs=42.7
Q ss_pred EEeccCCCCchHHHHHHHHccccccceEee--cC--CEEEEcCCch--hHHHHhhchhCCCCCcCceeecCC
Q psy14509 154 VVTGLSSFDIDLKVASKFFGTRFACGSSVT--GD--DEIVIQGDVK--DDLFDVIPEKWPEIDEDFIEDLGD 219 (243)
Q Consensus 154 vV~GLe~f~idlk~lAK~LkkkfACGgSV~--k~--~eI~IQGD~~--~~V~e~L~ek~~gIp~~~I~~~~~ 219 (243)
.|+|.=. |+-.......++++++-.|.|. .+ -+|++||+-. +.+.++|.. +-|...|+.++-
T Consensus 7 ~v~G~VQ-GVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~~---~~p~a~V~~v~~ 74 (91)
T 2fhm_A 7 IVDGRVQ-GVGFRYFVQMEADKRKLAGWVKNRDDGRVEILAEGPENALQSFVEAVKN---GSPFSKVTDISV 74 (91)
T ss_dssp EEEEECC-SSCHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEECHHHHHHHHHHHHT---TCSSSEEEEEEE
T ss_pred EEEEeEC-CcCHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHHh---CCCccEEEEEEE
Confidence 4777655 7888888999999999999995 12 4899999953 445555544 344566665543
No 13
>2npb_A Selenoprotein W; structure, thioredoxin-like fold, oxidoreductase; NMR {Mus musculus}
Probab=55.99 E-value=4 Score=31.12 Aligned_cols=29 Identities=38% Similarity=0.832 Sum_probs=18.7
Q ss_pred CeeeEEcCCCCCCccccccCCChHHHHHHHHhhCcH
Q psy14509 42 PISVLYCGNCSLPVEYCEYHPEYEKCKVWLEKNLPE 77 (243)
Q Consensus 42 P~~V~YC~vCs~P~EYCEfg~~~~kCk~WL~~n~pe 77 (243)
-++|.||..|+ |.+.+...++-|...+|+
T Consensus 4 ~V~I~YC~~C~-------y~~ra~~laqeLl~~Fp~ 32 (96)
T 2npb_A 4 AVRVVYSGACG-------YKPKYLQLKEKLEHEFPG 32 (96)
T ss_dssp EEEEECCCCSC-------HHHHHHHHHHHHHHHSBT
T ss_pred EEEEEEcCCCC-------CHHHHHHHHHHHHHhCCc
Confidence 47999999998 444444444445555554
No 14
>2ljk_A Protein C17ORF37; MIEN1, oncoprotein, signaling protein; NMR {Homo sapiens}
Probab=53.12 E-value=13 Score=29.47 Aligned_cols=12 Identities=42% Similarity=0.949 Sum_probs=10.3
Q ss_pred CeeeEEcCCCCC
Q psy14509 42 PISVLYCGNCSL 53 (243)
Q Consensus 42 P~~V~YC~vCs~ 53 (243)
.++|.||.-|+|
T Consensus 26 rV~IeYC~~C~~ 37 (117)
T 2ljk_A 26 RIVVEYCEPCGF 37 (117)
T ss_dssp CCEEEECTTTTC
T ss_pred eEEEEECCCCCC
Confidence 589999999973
No 15
>1urr_A CG18505 protein; acylphosphatase, enzyme; 1.5A {Drosophila melanogaster} SCOP: d.58.10.1
Probab=48.04 E-value=32 Score=25.81 Aligned_cols=63 Identities=6% Similarity=0.026 Sum_probs=43.4
Q ss_pred EEeccCCCCchHHHHHHHHccccccceEee--cCC--EEEEcCCc--hhHHHHhhchhCCCCCcCceeecCC
Q psy14509 154 VVTGLSSFDIDLKVASKFFGTRFACGSSVT--GDD--EIVIQGDV--KDDLFDVIPEKWPEIDEDFIEDLGD 219 (243)
Q Consensus 154 vV~GLe~f~idlk~lAK~LkkkfACGgSV~--k~~--eI~IQGD~--~~~V~e~L~ek~~gIp~~~I~~~~~ 219 (243)
.|+|.=. |+-..-....++++++-.|.|. .++ +|++||+. .+.+.++|.... =|...|+.++-
T Consensus 16 ~V~G~VQ-GVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~l~~f~~~l~~~g--P~~a~V~~v~~ 84 (102)
T 1urr_A 16 EIFGRVQ-GVFFRKHTSHEAKRLGVRGWCMNTRDGTVKGQLEAPMMNLMEMKHWLENNR--IPNAKVSKAEF 84 (102)
T ss_dssp EEEEECS-SSSHHHHHHHHHHHHTCEEEEEECTTSCEEEEEEECHHHHHHHHHHHHHCC--STTCEEEEEEE
T ss_pred EEEEeEC-CcChhHHHHHHHHHhCCcEEEEECCCCCEEEEEEcCHHHHHHHHHHHHhcC--CCccEEEEEEE
Confidence 4777655 7888888889999999999995 233 89999985 455666665442 23445555443
No 16
>2vh7_A Acylphosphatase-1; hydrolase, acetylation; 1.45A {Homo sapiens} PDB: 2w4c_A 2w4p_A 2k7k_A 2k7j_A 2acy_A
Probab=45.12 E-value=37 Score=25.27 Aligned_cols=62 Identities=10% Similarity=0.144 Sum_probs=42.7
Q ss_pred EEeccCCCCchHHHHHHHHccccccceEee--cCC--EEEEcCCc--hhHHHHhhchhCCCCCcCceeecC
Q psy14509 154 VVTGLSSFDIDLKVASKFFGTRFACGSSVT--GDD--EIVIQGDV--KDDLFDVIPEKWPEIDEDFIEDLG 218 (243)
Q Consensus 154 vV~GLe~f~idlk~lAK~LkkkfACGgSV~--k~~--eI~IQGD~--~~~V~e~L~ek~~gIp~~~I~~~~ 218 (243)
.|+|.=. |+-..-....++++++=.|.|. .++ +|++||+. .+.+.++|... +=|...|+.++
T Consensus 13 ~V~G~VQ-GVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~v~~f~~~l~~~--~p~~a~V~~v~ 80 (99)
T 2vh7_A 13 EIFGKVQ-GVFFRKHTQAEGKKLGLVGWVQNTDRGTVQGQLQGPISKVRHMQEWLETR--GSPKSHIDKAN 80 (99)
T ss_dssp EEEEECS-SSCHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHHHT--CSTTCEEEEEE
T ss_pred EEEEeeC-CcChHHHHHHHHHHcCCcEEEEECCCCCEEEEEEcCHHHHHHHHHHHHhc--CCCceEEEEEE
Confidence 4777655 7888888999999999999995 233 89999985 45566666544 22344555544
No 17
>2ojl_A Hypothetical protein; BPR68, NESG, Q7WAF1, structural genomics, PSI-2, protein STR initiative, northeast structural genomics consortium; 2.10A {Bordetella parapertussis}
Probab=41.08 E-value=11 Score=29.60 Aligned_cols=12 Identities=33% Similarity=0.949 Sum_probs=10.6
Q ss_pred eeeEEcCCCCCC
Q psy14509 43 ISVLYCGNCSLP 54 (243)
Q Consensus 43 ~~V~YC~vCs~P 54 (243)
+.|.||.-|++=
T Consensus 11 V~I~YC~~C~w~ 22 (108)
T 2ojl_A 11 IAIQYCTQCQWL 22 (108)
T ss_dssp EEEEEETTTTCH
T ss_pred EEEEECCCCCCh
Confidence 899999999873
No 18
>2oka_A Hypothetical protein; PAR82, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.50A {Pseudomonas aeruginosa} PDB: 2obk_A
Probab=39.80 E-value=11 Score=29.11 Aligned_cols=13 Identities=31% Similarity=0.876 Sum_probs=11.0
Q ss_pred eeeEEcCCCCCCc
Q psy14509 43 ISVLYCGNCSLPV 55 (243)
Q Consensus 43 ~~V~YC~vCs~P~ 55 (243)
+.|.||.-|++=+
T Consensus 8 V~I~YC~~C~~~~ 20 (104)
T 2oka_A 8 IVITYCTQCQWLL 20 (104)
T ss_dssp EEEEEETTTTCHH
T ss_pred EEEEECCCCCChH
Confidence 8999999998743
No 19
>2p0g_A Selenoprotein W-related protein; VCR75, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Vibrio cholerae}
Probab=39.31 E-value=12 Score=29.09 Aligned_cols=13 Identities=31% Similarity=0.958 Sum_probs=11.0
Q ss_pred eeeEEcCCCCCCc
Q psy14509 43 ISVLYCGNCSLPV 55 (243)
Q Consensus 43 ~~V~YC~vCs~P~ 55 (243)
+.|.||.-|++=+
T Consensus 6 V~I~YC~~C~w~~ 18 (105)
T 2p0g_A 6 IEIYYCRQCNWML 18 (105)
T ss_dssp EEEEEETTTTCHH
T ss_pred EEEEECCCCCChH
Confidence 8999999998743
No 20
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=39.16 E-value=1.8 Score=30.78 Aligned_cols=33 Identities=21% Similarity=0.477 Sum_probs=22.6
Q ss_pred CCCCeeeEEcCCCCCCccccccCCChHHHHHHHHh
Q psy14509 39 VNYPISVLYCGNCSLPVEYCEYHPEYEKCKVWLEK 73 (243)
Q Consensus 39 ~~~P~~V~YC~vCs~P~EYCEfg~~~~kCk~WL~~ 73 (243)
-..+-..+|| +|..|.. =+|.-.-+.|..|...
T Consensus 13 ~~~~~~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~ 45 (68)
T 3o70_A 13 NLYFQGLVTC-FCMKPFA-GRPMIECNECHTWIHL 45 (68)
T ss_dssp -CTTTTCCCS-TTCCCCT-TCCEEECTTTCCEEET
T ss_pred cCCCCCceEe-ECCCcCC-CCCEEECCCCCccccc
Confidence 3446778999 9999875 3444446779989543
No 21
>2lxf_A Uncharacterized protein; beaver fever, giardiasis, seattle structural genomics center infectious disease, ssgcid, structural genomics; NMR {Giardia lamblia}
Probab=39.00 E-value=29 Score=27.35 Aligned_cols=60 Identities=20% Similarity=0.190 Sum_probs=39.9
Q ss_pred EeccCCCCchHHHHHHHHccccccceEee--cC--CEEEEcCCc--hhHHHHhhchhCCCCCcCceeecC
Q psy14509 155 VTGLSSFDIDLKVASKFFGTRFACGSSVT--GD--DEIVIQGDV--KDDLFDVIPEKWPEIDEDFIEDLG 218 (243)
Q Consensus 155 V~GLe~f~idlk~lAK~LkkkfACGgSV~--k~--~eI~IQGD~--~~~V~e~L~ek~~gIp~~~I~~~~ 218 (243)
|+|.=. |+-...+...+.++++-.|.|. .+ -+|++||+- .+.+.++|. + |=|...|+.++
T Consensus 40 V~G~VQ-GVGFR~~v~~~A~~lgL~G~VrN~~dG~Vei~~eG~~~~v~~f~~~l~-~--gPp~A~V~~v~ 105 (121)
T 2lxf_A 40 VTGKVQ-GVFFRKYTKKEADALSLVGYVTNNEDGSVSGVVQGPKEQVDAFVKYLH-K--GSPKSVVKKVS 105 (121)
T ss_dssp EEECTT-CCCCHHHHHHHHHHHTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHH-H--CCTTCCEEEEE
T ss_pred EEEeeC-CcCchHHHHHHHHHcCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHH-h--CCCCCEEEEEE
Confidence 677655 6777888888888888999995 22 389999973 344555553 2 33444555544
No 22
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=37.88 E-value=8.3 Score=29.14 Aligned_cols=30 Identities=20% Similarity=0.404 Sum_probs=19.0
Q ss_pred CCCCeeeEEcCCCCCCccccccCCChHH--HH-HHH
Q psy14509 39 VNYPISVLYCGNCSLPVEYCEYHPEYEK--CK-VWL 71 (243)
Q Consensus 39 ~~~P~~V~YC~vCs~P~EYCEfg~~~~k--Ck-~WL 71 (243)
...|-...|| +|.-|.. .+.-..+. |. +|.
T Consensus 30 ~~d~~e~~yC-iC~~~~~--g~MI~CD~~dC~~~Wf 62 (91)
T 1weu_A 30 PVDPNEPTYC-LCHQVSY--GEMIGCDNPDCSIEWF 62 (91)
T ss_dssp CCCSCCCBCS-TTCCBCC--SCCCCCSCSSCSCCCC
T ss_pred CcCCCCCcEE-ECCCCCC--CCEeEecCCCCCCCCE
Confidence 3346688999 9999862 23333555 65 673
No 23
>3dex_A SAV_2001; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Streptomyces avermitilis} SCOP: c.47.1.0
Probab=37.29 E-value=13 Score=29.03 Aligned_cols=13 Identities=23% Similarity=0.743 Sum_probs=10.8
Q ss_pred eeeEEcCCCCCCc
Q psy14509 43 ISVLYCGNCSLPV 55 (243)
Q Consensus 43 ~~V~YC~vCs~P~ 55 (243)
+.|.||.-|++=+
T Consensus 15 V~I~YC~~C~w~l 27 (107)
T 3dex_A 15 VQIEYCTQCRWLP 27 (107)
T ss_dssp EEEEEETTTTCHH
T ss_pred EEEEECCCCCChH
Confidence 7899999988744
No 24
>3trg_A Acylphosphatase; fatty acid and phospholipid metabolism, hydrolase; 1.60A {Coxiella burnetii}
Probab=36.75 E-value=62 Score=24.16 Aligned_cols=63 Identities=13% Similarity=0.188 Sum_probs=40.0
Q ss_pred EEeccCCCCchHHHHHHHHccccccceEee--cC--CEEEEcCCchhHHHHhhchhCCCCCcCceeecC
Q psy14509 154 VVTGLSSFDIDLKVASKFFGTRFACGSSVT--GD--DEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDLG 218 (243)
Q Consensus 154 vV~GLe~f~idlk~lAK~LkkkfACGgSV~--k~--~eI~IQGD~~~~V~e~L~ek~~gIp~~~I~~~~ 218 (243)
.|+|.-. |+-..-+...++.+++=.|.|. .+ -+|++||+- +.|.+|+.....+=|...|+.++
T Consensus 17 ~V~G~VQ-GVGFR~~v~~~A~~lgL~G~VrN~~dG~Vei~~eG~~-~~l~~f~~~l~~gPp~A~V~~v~ 83 (98)
T 3trg_A 17 TVSGKVQ-GVFFRESVRKKAEELQLTGWVKNLSHGDVELVACGER-DSIMILTEWLWEGPPQAAVSNVN 83 (98)
T ss_dssp EEEEECS-SSCHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEEH-HHHHHHHHHTTTCSTTCEEEEEE
T ss_pred EEEEeEC-CCCccHHHHHHHHHcCCeEEEEECCCCEEEEEEEECH-HHHHHHHHHHHhCCCCcEEEEEE
Confidence 4667555 7778888888889999999995 22 389999983 33444443332222344555443
No 25
>2fa8_A Hypothetical protein ATU0228; ALPH-beta structure, 4 helix bundle, structural genomics, PS protein structure initiative; 1.90A {Agrobacterium tumefaciens str} SCOP: c.47.1.23
Probab=36.59 E-value=14 Score=28.63 Aligned_cols=11 Identities=36% Similarity=1.108 Sum_probs=10.1
Q ss_pred eeeEEcCCCCC
Q psy14509 43 ISVLYCGNCSL 53 (243)
Q Consensus 43 ~~V~YC~vCs~ 53 (243)
++|.||.-|++
T Consensus 10 V~I~YC~~C~~ 20 (105)
T 2fa8_A 10 IAIRYCTQCNW 20 (105)
T ss_dssp EEEEEETTTTC
T ss_pred EEEEECCCCCC
Confidence 89999999985
No 26
>1ulr_A Putative acylphosphatase; hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: d.58.10.1
Probab=34.46 E-value=87 Score=22.69 Aligned_cols=61 Identities=13% Similarity=0.170 Sum_probs=42.5
Q ss_pred EEeccCCCCchHHHHHHHHccccccceEee--cC--CEEEEcCCc--hhHHHHhhchhCCCCCcCceeecC
Q psy14509 154 VVTGLSSFDIDLKVASKFFGTRFACGSSVT--GD--DEIVIQGDV--KDDLFDVIPEKWPEIDEDFIEDLG 218 (243)
Q Consensus 154 vV~GLe~f~idlk~lAK~LkkkfACGgSV~--k~--~eI~IQGD~--~~~V~e~L~ek~~gIp~~~I~~~~ 218 (243)
.|+|.=. |+-.......++.+++-.|.|. .+ -+|++||+. .+...++|. ..| |...|+.++
T Consensus 7 ~v~G~VQ-GVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~-~gP--~~a~V~~v~ 73 (88)
T 1ulr_A 7 LVKGRVQ-GVGYRAFAQKKALELGLSGYAENLPDGRVEVVAEGPKEALELFLHHLK-QGP--RLARVEAVE 73 (88)
T ss_dssp EEEEECS-SSSHHHHHHHHHHHTTCEEEEEECTTSCEEEEEESCHHHHHHHHHHHH-HCS--TTCEEEEEE
T ss_pred EEEEeEC-CcCHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHH-hCC--CCcEEEEEE
Confidence 4777655 7788888999999999999995 22 389999986 456666666 422 344555543
No 27
>1aps_A Acylphosphatase; hydrolase(acting on acid anhydrides); NMR {Equus caballus} SCOP: d.58.10.1
Probab=30.48 E-value=34 Score=25.43 Aligned_cols=50 Identities=10% Similarity=0.090 Sum_probs=32.3
Q ss_pred EEeccCCCCchHHHHHHHHccccccceEee--cCC--EEEEcCCch--hHHHHhhch
Q psy14509 154 VVTGLSSFDIDLKVASKFFGTRFACGSSVT--GDD--EIVIQGDVK--DDLFDVIPE 204 (243)
Q Consensus 154 vV~GLe~f~idlk~lAK~LkkkfACGgSV~--k~~--eI~IQGD~~--~~V~e~L~e 204 (243)
.|+|.=. |+-..-....++++++-.|.|. .++ +|++||+.. +.+.++|..
T Consensus 12 ~V~G~VQ-GVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~l~~f~~~l~~ 67 (98)
T 1aps_A 12 EVFGRVQ-GVCFRMYAEDEARKIGVVGWVKNTSKGTVTGQVQGPEEKVNSMKSWLSK 67 (98)
T ss_dssp EEECTTS-CCCCTTHHHHHHHHHTCEEEEECCTTCEEEEEEEEEHHHHHHHHHSSSS
T ss_pred EEEEEEC-CcCHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHhh
Confidence 3666544 5556666677777777888885 233 899999853 444555543
No 28
>2gv1_A Probable acylphosphatase; globular alpha-helix/beta-sheet protein, hydrolase; NMR {Escherichia coli}
Probab=29.50 E-value=51 Score=24.15 Aligned_cols=48 Identities=17% Similarity=0.317 Sum_probs=30.0
Q ss_pred EEeccCCCCchHHHHHHHHccccccceEee--cCC--EEEEcCCc--hhHHHHhh
Q psy14509 154 VVTGLSSFDIDLKVASKFFGTRFACGSSVT--GDD--EIVIQGDV--KDDLFDVI 202 (243)
Q Consensus 154 vV~GLe~f~idlk~lAK~LkkkfACGgSV~--k~~--eI~IQGD~--~~~V~e~L 202 (243)
.|+|.=. |+-.......++++++-.|.|. .++ +|++||+. .+.+.++|
T Consensus 9 ~V~G~VQ-GVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l 62 (92)
T 2gv1_A 9 WVYGRVQ-GVGFRYTTQYEAKRLGLTGYAKNLDDGSVEVVACGEEGQVEKLMQWL 62 (92)
T ss_dssp EEEEECT-TTTCCSHHHHHHHHHTCCCEEEECSSSCEEEEECSCHHHHHHHHHHH
T ss_pred EEEEeeC-CcCHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHh
Confidence 3566443 4555555666666667778885 233 89999985 34555555
No 29
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=28.96 E-value=4.8 Score=33.96 Aligned_cols=30 Identities=20% Similarity=0.529 Sum_probs=23.1
Q ss_pred EEcCCCCCCcccccc---CCChHHHHHHHHhhC
Q psy14509 46 LYCGNCSLPVEYCEY---HPEYEKCKVWLEKNL 75 (243)
Q Consensus 46 ~YC~vCs~P~EYCEf---g~~~~kCk~WL~~n~ 75 (243)
.|||+|.-|+.--+| .-..+.|..|.....
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~C 35 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKC 35 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGG
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhc
Confidence 489999999887766 334678999986654
No 30
>2bjd_A Acylphosphatase; hyperthermophIle, hydrolase; 1.27A {Sulfolobus solfataricus} PDB: 2bje_A 1y9o_A
Probab=28.12 E-value=80 Score=23.67 Aligned_cols=49 Identities=20% Similarity=0.299 Sum_probs=36.3
Q ss_pred EEeccCCCCchHHHHHHHHccccccceEee--cC--CEEEEcCCch--hHHHHhhc
Q psy14509 154 VVTGLSSFDIDLKVASKFFGTRFACGSSVT--GD--DEIVIQGDVK--DDLFDVIP 203 (243)
Q Consensus 154 vV~GLe~f~idlk~lAK~LkkkfACGgSV~--k~--~eI~IQGD~~--~~V~e~L~ 203 (243)
.|+|.=. |+-..-....++++++-.|.|. .+ -+|++||+.. +.+.++|.
T Consensus 19 ~V~G~VQ-GVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~eG~~~~i~~f~~~l~ 73 (101)
T 2bjd_A 19 RVYGLVQ-GVGFRKFVQIHAIRLGIKGYAKNLPDGSVEVVAEGYEEALSKLLERIK 73 (101)
T ss_dssp EEEEECS-SSSHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHT
T ss_pred EEEEeEC-CcCHHHHHHHHHHHcCCeEEEEECCCCcEEEEEEeCHHHHHHHHHHHH
Confidence 4777655 7888889999999999999995 22 3899999853 44444544
No 31
>1s3a_A NADH-ubiquinone oxidoreductase B8 subunit; CI-B8, ndufa2, complex I; NMR {Homo sapiens} SCOP: c.47.1.22
Probab=27.81 E-value=24 Score=26.48 Aligned_cols=25 Identities=20% Similarity=0.390 Sum_probs=20.9
Q ss_pred ccccccCCChHHHHHHHHhhCcHHH
Q psy14509 55 VEYCEYHPEYEKCKVWLEKNLPEEF 79 (243)
Q Consensus 55 ~EYCEfg~~~~kCk~WL~~n~pel~ 79 (243)
.-||.+|++...-+++++.++|++-
T Consensus 24 ~~yc~~~~sS~G~R~Fl~~~l~~~k 48 (102)
T 1s3a_A 24 IHLCQRSPGSQGVRDFIEKRYVELK 48 (102)
T ss_dssp EECCSSSCCCHHHHHHHHHTHHHHH
T ss_pred EEEcCCCCCchhHHHHHHHhhHHHH
Confidence 3577899999999999998888764
No 32
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=27.80 E-value=4.1 Score=28.81 Aligned_cols=31 Identities=19% Similarity=0.364 Sum_probs=22.0
Q ss_pred CeeeEEcCCCCCCccccccCCChHHHHHHHHh
Q psy14509 42 PISVLYCGNCSLPVEYCEYHPEYEKCKVWLEK 73 (243)
Q Consensus 42 P~~V~YC~vCs~P~EYCEfg~~~~kCk~WL~~ 73 (243)
.-..+|| +|..|.++=++.-.-+.|..|...
T Consensus 13 ~~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~ 43 (72)
T 1wee_A 13 DNWKVDC-KCGTKDDDGERMLACDGCGVWHHT 43 (72)
T ss_dssp CSSEECC-TTCCCSCCSSCEEECSSSCEEEET
T ss_pred CCcceEe-eCCCccCCCCcEEECCCCCCccCC
Confidence 3467999 799997664454456679999543
No 33
>2dsm_A Hypothetical protein YQAI; homodimer, domain swapped dimer, inter-domain beta sheet, structural genomics, PSI-2, protein structure initiative; NMR {Bacillus subtilis} SCOP: d.372.1.1
Probab=25.88 E-value=41 Score=24.60 Aligned_cols=36 Identities=22% Similarity=0.328 Sum_probs=27.9
Q ss_pred ccceEee-cCCEEEEcCC--chhHHHHhhchhCCCCCcCc
Q psy14509 177 ACGSSVT-GDDEIVIQGD--VKDDLFDVIPEKWPEIDEDF 213 (243)
Q Consensus 177 ACGgSV~-k~~eI~IQGD--~~~~V~e~L~ek~~gIp~~~ 213 (243)
+||+-|. +++.|+.-|| ++++|.++|.+.+ |+..+.
T Consensus 24 ~cG~EI~~gd~yl~f~GeiIl~eNl~~Yl~e~~-g~~~k~ 62 (72)
T 2dsm_A 24 FYGDEVTPVDDYVIDGGEIILRENLERYLREQL-GFEFKN 62 (72)
T ss_dssp TTSSCBCTTSCEEEETTEEEEHHHHHHHHHHTC-CCEECC
T ss_pred ccCCeeecCCeEEEECCeeehHHHHHHHHHHHh-CcEeec
Confidence 6898887 5566777777 7889999999998 765544
No 34
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=25.47 E-value=5.4 Score=28.47 Aligned_cols=31 Identities=29% Similarity=0.785 Sum_probs=20.9
Q ss_pred CeeeEEcCCCCCCccccccCCChHHHHHHHHh
Q psy14509 42 PISVLYCGNCSLPVEYCEYHPEYEKCKVWLEK 73 (243)
Q Consensus 42 P~~V~YC~vCs~P~EYCEfg~~~~kCk~WL~~ 73 (243)
....+|| +|..|.+-=++.-.-+.|..|...
T Consensus 7 ~~~~~yC-iC~~~~~~~~~MI~Cd~C~~WfH~ 37 (75)
T 3kqi_A 7 ATVPVYC-VCRLPYDVTRFMIECDACKDWFHG 37 (75)
T ss_dssp CCCCEET-TTTEECCTTSCEEECTTTCCEEEH
T ss_pred CCCeeEE-ECCCcCCCCCCEEEcCCCCCCEec
Confidence 4566899 999987533344445679999544
No 35
>1w2i_A Acylphosphatase; hydrolase, thermophilic, stability, amyloid; 1.5A {Pyrococcus horikoshii} SCOP: d.58.10.1 PDB: 1v3z_A 2w4d_A
Probab=25.18 E-value=1.1e+02 Score=22.31 Aligned_cols=61 Identities=13% Similarity=0.140 Sum_probs=41.3
Q ss_pred EEeccCCCCchHHHHHHHHccccccceEee--cC--CEEEEcCCc--hhHHHHhhchhCCCCCcCceeecC
Q psy14509 154 VVTGLSSFDIDLKVASKFFGTRFACGSSVT--GD--DEIVIQGDV--KDDLFDVIPEKWPEIDEDFIEDLG 218 (243)
Q Consensus 154 vV~GLe~f~idlk~lAK~LkkkfACGgSV~--k~--~eI~IQGD~--~~~V~e~L~ek~~gIp~~~I~~~~ 218 (243)
.|+|.=. |+-.......++++++=.|.|. .+ -+|++||+- .+.+.++|. . +=|...|+.++
T Consensus 9 ~V~G~VQ-GVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~-~--gP~~a~V~~v~ 75 (91)
T 1w2i_A 9 KIYGRVQ-GVGFRWSMQREARKLGVNGWVRNLPDGSVEAVLEGDEERVEALIGWAH-Q--GPPLARVTRVE 75 (91)
T ss_dssp EEEEECS-SSSHHHHHHHHHHHHTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHTT-T--CSTTCEEEEEE
T ss_pred EEEEEEC-CcCHHHHHHHHHHHcCCeEEEEECCCCCEEEEEEeCHHHHHHHHHHHH-h--CCCCcEEEEEE
Confidence 4777655 7788888888888889999995 22 389999985 345555555 3 22344555443
No 36
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=25.01 E-value=4.7 Score=27.62 Aligned_cols=30 Identities=20% Similarity=0.520 Sum_probs=19.7
Q ss_pred eEEcCCCCCCccccccCCChHHHHHHHHhh
Q psy14509 45 VLYCGNCSLPVEYCEYHPEYEKCKVWLEKN 74 (243)
Q Consensus 45 V~YC~vCs~P~EYCEfg~~~~kCk~WL~~n 74 (243)
..||++|..|..-=++.-.-+.|..|....
T Consensus 6 ~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~ 35 (64)
T 1we9_A 6 SGQCGACGESYAADEFWICCDLCEMWFHGK 35 (64)
T ss_dssp CCCCSSSCCCCCSSSCEEECSSSCCEEETT
T ss_pred CCCCCCCCCccCCCCCEEEccCCCCCCCcc
Confidence 469999999974223333355798895443
No 37
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=21.03 E-value=10 Score=27.16 Aligned_cols=31 Identities=23% Similarity=0.652 Sum_probs=20.3
Q ss_pred eeeEEcCCCCCCccccccCCChHHHHHHHHhh
Q psy14509 43 ISVLYCGNCSLPVEYCEYHPEYEKCKVWLEKN 74 (243)
Q Consensus 43 ~~V~YC~vCs~P~EYCEfg~~~~kCk~WL~~n 74 (243)
....|| +|..|.+.=++.-.-+.|..|....
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~ 40 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLCQDWFHGS 40 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHH
T ss_pred CCccEE-EcCCccCCCCceEEcCCCCCcEEee
Confidence 456899 9999985223333356799995443
No 38
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=20.86 E-value=10 Score=27.16 Aligned_cols=26 Identities=31% Similarity=0.721 Sum_probs=18.7
Q ss_pred CeeeEEcCCCCCCccccccCCC--hH--HHHHHH
Q psy14509 42 PISVLYCGNCSLPVEYCEYHPE--YE--KCKVWL 71 (243)
Q Consensus 42 P~~V~YC~vCs~P~EYCEfg~~--~~--kCk~WL 71 (243)
|-...|| +|+.|.+ +|.+ -+ .|..|.
T Consensus 13 ~~~~~~C-iC~~~~~---~g~MI~CD~~~C~~W~ 42 (78)
T 1wew_A 13 PEIKVRC-VCGNSLE---TDSMIQCEDPRCHVWQ 42 (78)
T ss_dssp CCCCCCC-SSCCCCC---CSCEEECSSTTTCCEE
T ss_pred CCCCEEe-ECCCcCC---CCCEEEECCccCCccc
Confidence 5578999 8999954 3443 44 899894
No 39
>2lvf_A 2S albumin; allergen, copper binding, hydrophobic interaction; NMR {Bertholletia excelsa}
Probab=20.31 E-value=30 Score=26.85 Aligned_cols=15 Identities=20% Similarity=0.419 Sum_probs=13.0
Q ss_pred CCCCCccccccCCCh
Q psy14509 50 NCSLPVEYCEYHPEY 64 (243)
Q Consensus 50 vCs~P~EYCEfg~~~ 64 (243)
.|.++|.+|.|+++.
T Consensus 97 ~C~i~p~~C~f~~~~ 111 (114)
T 2lvf_A 97 RCNLSPMRCPMGGSI 111 (114)
T ss_dssp HHCCCCSCCTTTTCS
T ss_pred hcCCCcccCCCCCCC
Confidence 489999999999875
Done!