RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14509
(243 letters)
>gnl|CDD|233294 TIGR01159, DRP1, density-regulated protein DRP1. This protein
family shows weak but suggestive similarity to
translation initiation factor SUI1 and its prokaryotic
homologs.
Length = 173
Score = 180 bits (458), Expect = 2e-57
Identities = 79/180 (43%), Positives = 112/180 (62%), Gaps = 11/180 (6%)
Query: 42 PISVLYCGNCSLPVEYCEYHPEYEKCKVWLEKNLPEEFEKLVKLSGDGGDEDATEEKKRQ 101
P+ VLYCG CSLP EYCE+ + ++CKVWL +N P+ + KL + +A + Q
Sbjct: 1 PLRVLYCGVCSLPPEYCEFSGDLKRCKVWLSENAPDLYAKLYGTDSPTAEAEAVTIGEAQ 60
Query: 102 KRGGKGIVKARKKEEVPKQRGGKGIVKARKKEEVPKQVCVSRAPRGKKKSVTVVTGLSSF 161
+ G +K+ + Q+ + +KK+++P++V + R PR K+K VTV+ GL +F
Sbjct: 61 EEKG-------EKDLLGIQKAQEAREGGKKKKKLPQKVTIKREPRTKRKFVTVIKGLETF 113
Query: 162 DIDLKVASKFFGTRFACGSSV----TGDDEIVIQGDVKDDLFDVIPEKWPEIDEDFIEDL 217
DIDLK ASK F +FA G SV TG +EIVIQGDV DD+ D I EKWPE+ + I+DL
Sbjct: 114 DIDLKKASKTFAQKFATGCSVSKSVTGKEEIVIQGDVMDDIEDYIHEKWPEVGDKDIKDL 173
>gnl|CDD|211320 cd11607, DENR_C, C-terminal domain of DENR and related proteins.
DENR (density regulated protein), together with MCT-1
(multiple copies T cell malignancies), has been shown to
have similar function as eIF2D translation initiation
factor (also known as ligatin), which is involved in the
recruitment and delivery of aminoacyl-tRNAs to the
P-site of the eukaryotic ribosome in a GTP-independent
manner.
Length = 86
Score = 131 bits (332), Expect = 1e-39
Identities = 52/86 (60%), Positives = 61/86 (70%), Gaps = 4/86 (4%)
Query: 137 KQVCVSRAPRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGD----DEIVIQG 192
+V + R R K+K VT VTGL +F IDLK A+K F +FACG+SVT DEIVIQG
Sbjct: 1 SKVTIKRISRNKRKFVTTVTGLETFGIDLKKAAKLFAKKFACGASVTKGAEGKDEIVIQG 60
Query: 193 DVKDDLFDVIPEKWPEIDEDFIEDLG 218
DV DD+ D+I EKWPEIDED IE LG
Sbjct: 61 DVTDDIVDLILEKWPEIDEDNIEILG 86
>gnl|CDD|216391 pfam01253, SUI1, Translation initiation factor SUI1.
Length = 74
Score = 80.6 bits (200), Expect = 5e-20
Identities = 28/71 (39%), Positives = 43/71 (60%)
Query: 136 PKQVCVSRAPRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVK 195
+++ + R R K+VTVVTGL F IDLK +K +F CG +V +EI IQGD +
Sbjct: 4 DQKIRIRREKRRGGKTVTVVTGLELFGIDLKKLAKELKKKFGCGGTVKDGEEIEIQGDHR 63
Query: 196 DDLFDVIPEKW 206
D + D++ ++
Sbjct: 64 DKVKDLLEKEG 74
>gnl|CDD|211317 cd00474, eIF1_SUI1_like, Eukaryotic initiation factor 1 and related
proteins. Members of the eIF1/SUI1 (eukaryotic
initiation factor 1) family are found in eukaryotes,
archaea, and some bacteria; eukaryotic members are
understood to play an important role in accurate
initiator codon recognition during translation
initiation. eIF1 interacts with 18S rRNA in the 40S
ribosomal subunit during eukaryotic translation
initiation. Point mutations in the yeast eIF1 implicate
the protein in maintaining accurate start-site selection
but its mechanism of action is unknown. The function of
non-eukaryotic family members is also unclear.
Length = 78
Score = 59.7 bits (145), Expect = 4e-12
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 141 VSRAPRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGD-DEIVIQGDVKDDLF 199
+ R K VT V GL ++ IDL+ + + CG SV G+ EI IQGD D +
Sbjct: 4 IKVEQRSGGKKVTKVEGLPAY-IDLRKLADELKKKLGCGGSVEGEKMEIEIQGDHTDQII 62
Query: 200 DVIPEKWPEID 210
+ EK + D
Sbjct: 63 VALEEKGIDKD 73
>gnl|CDD|223102 COG0023, SUI1, Translation initiation factor 1 (eIF-1/SUI1) and
related proteins [Translation, ribosomal structure and
biogenesis].
Length = 104
Score = 59.6 bits (145), Expect = 1e-11
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 146 RGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDLFDVI--- 202
R K K+VT++ GL DIDLK +K + ACG +V D EI IQGD +D + +++
Sbjct: 36 RRKGKTVTIIEGLDLKDIDLKKLAKELKKKCACGGTVK-DGEIEIQGDHRDKVKELLIKK 94
Query: 203 --PEKWPEID 210
K I+
Sbjct: 95 GFKVKNIGIE 104
>gnl|CDD|211319 cd11567, YciH_like, Homologs of eIF1/SUI1 including Escherichia
coli YciH. Members of the eIF1/SUI1 (eukaryotic
initiation factor 1) family are found in eukaryotes,
archaea, and some bacteria; eukaryotic members are
understood to play an important role in accurate
initiator codon recognition during translation
initiation. The function of non-eukaryotic family
members is unclear. Escherichia coli YciH is a
non-essential protein and was reported to be able to
perform some of the functions of IF3 in prokaryotic
initiation.
Length = 76
Score = 45.5 bits (109), Expect = 5e-07
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 146 RGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDDL 198
K+VTV+ GL + DLK +K + CG +V D EI +QGD ++ +
Sbjct: 11 GRGGKTVTVIEGLPLSEEDLKELAKELKKKCGCGGTVK-DGEIELQGDHREKI 62
>gnl|CDD|130226 TIGR01158, SUI1_rel, translation initation factor SUI1, putative,
prokaryotic. This family of archaeal and bacterial
proteins is homologous to the eukaryotic translation
intiation factor SUI1 involved in directing the ribosome
to the proper start site of translation by functioning
in concert with eIF-2 and the initiator tRNA-Met
[Protein synthesis, Translation factors].
Length = 101
Score = 45.8 bits (109), Expect = 8e-07
Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 129 ARKKEEVPKQVCVSRAPRGKK-KSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDE 187
A+ KE+ + V + R RG+K K VT++ GL DIDLK +K ++ CG +V D
Sbjct: 18 AKPKED--QVVRIQRETRGRKGKGVTIIEGLDLSDIDLKELAKELKSKCGCGGTVK-DGV 74
Query: 188 IVIQGDVKDDLFDVIPEK 205
I IQGD +D + D++ +K
Sbjct: 75 IEIQGDHRDRVKDLLEKK 92
>gnl|CDD|211321 cd11608, eIF2D_C, C-terminal domain of eIF2D and related proteins.
eIF2D translation initiation factor (also known as
ligatin) is involved in the recruitment and delivery of
aminoacyl-tRNAs to the P-site of the eukaryotic ribosome
in a GTP-independent manner.
Length = 85
Score = 42.6 bits (101), Expect = 1e-05
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 146 RGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVT------GDDEIVIQGDVKDDLF 199
R K VT+++GL SF ID + +K + A +SV+ E+ +QG+ +
Sbjct: 9 RQGNKKVTLISGLESFGIDPEEFAKELQKKCAASTSVSPLPGKKKGVEVQVQGNQVKFVA 68
Query: 200 DVIPEKW 206
++ EK+
Sbjct: 69 KLLTEKY 75
>gnl|CDD|211318 cd11566, eIF1_SUI1, Eukaryotic initiation factor 1. eIF1/SUI1
(eukaryotic initiation factor 1) plays an important role
in accurate initiator codon recognition during
translation initiation. eIF1 interacts with 18S rRNA in
the 40S ribosomal subunit during eukaryotic translation
initiation. Point mutations in the yeast eIF1 implicate
the protein in maintaining accurate start-site selection
but its mechanism of action is unknown.
Length = 84
Score = 40.6 bits (96), Expect = 4e-05
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 146 RGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDE----IVIQGD 193
R +K++T V GL + DLK K F FAC +V D E I +QGD
Sbjct: 10 RNGRKTLTTVQGLPE-EFDLKKILKAFKKEFACNGTVVEDPEYGEVIQLQGD 60
>gnl|CDD|179173 PRK00939, PRK00939, translation initiation factor Sui1; Reviewed.
Length = 99
Score = 39.9 bits (94), Expect = 1e-04
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 150 KSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGD----VKDDLFD 200
K VT++ G+ DIDLK +K ++ ACG +V D I +QGD VK+ L
Sbjct: 37 KEVTIIEGIDPKDIDLKELAKKLKSKLACGGTVK-DGRIELQGDHRERVKELLIK 90
>gnl|CDD|181613 PRK09019, PRK09019, translation initiation factor Sui1; Validated.
Length = 108
Score = 35.7 bits (83), Expect = 0.004
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 15/88 (17%)
Query: 113 KKEEVPKQR-GGKGIVKARKKEEVPKQVCVSRAPRGKK-KSVTVVTGLSSFDIDLKVASK 170
+E+ +R G GIV+ + R G+K K V ++TGL D +LK +
Sbjct: 18 DEEKAKPERPKGDGIVR------------IQRQTSGRKGKGVCLITGLDLDDAELKKLAA 65
Query: 171 FFGTRFACGSSVTGDDEIVIQGDVKDDL 198
+ CG +V D I IQGD +D L
Sbjct: 66 ELKKKCGCGGAVK-DGVIEIQGDKRDLL 92
>gnl|CDD|236021 PRK07451, PRK07451, translation initiation factor Sui1; Validated.
Length = 115
Score = 34.4 bits (79), Expect = 0.012
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 9/79 (11%)
Query: 130 RKKEEVPKQ-----VCVSRAPRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVT- 183
R ++P Q V +R+ R K K+VTV+TG L K T+ CGS T
Sbjct: 28 RGVPDLPPQQQNLRVQATRSGR-KGKTVTVITGFQHKPETLAKLLKQLKTQ--CGSGGTV 84
Query: 184 GDDEIVIQGDVKDDLFDVI 202
D+ I IQGD + + +++
Sbjct: 85 KDNTIEIQGDHRQKILEIL 103
>gnl|CDD|218941 pfam06217, GAGA_bind, GAGA binding protein-like family. This
family includes gbp a protein from Soybean that binds to
GAGA element dinucleotide repeat DNA. It seems likely
that the this domain mediates DNA binding. This putative
domain contains several conserved cysteines and a
histidine suggesting this may be a zinc-binding DNA
interaction domain.
Length = 301
Score = 34.1 bits (78), Expect = 0.050
Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 7/72 (9%)
Query: 92 EDATEEKKRQKRGGKGIVKARKKEEVPKQRGGKGIVKARKKEEVPKQVCVSRAPRGKKKS 151
+E K+ K+G V K + PK++G V R+ + KS
Sbjct: 141 PPEAKEVKKPKKGQSPKVPKAPKPKKPKKKGSV------SNRSVKMPGIDPRS-KPDWKS 193
Query: 152 VTVVTGLSSFDI 163
+V S DI
Sbjct: 194 QDLVINGVSMDI 205
>gnl|CDD|130228 TIGR01160, SUI1_MOF2, translation initiation factor SUI1,
eukaryotic. Alternate name: MOF2. A similar protein
family (see TIGRFAMs model TIGR01158) is found in
prokaryotes. The human proteins complements a yeast SUI1
mutatation [Protein synthesis, Translation factors].
Length = 110
Score = 31.7 bits (72), Expect = 0.095
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 146 RGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDE----IVIQGD 193
R +K++T V GL + DLK K FAC +V D E I +QGD
Sbjct: 35 RNGRKTLTTVQGLPK-EYDLKKIVKALKKEFACNGTVIEDPEMGEVIQLQGD 85
>gnl|CDD|168689 PRK06824, PRK06824, translation initiation factor Sui1; Validated.
Length = 118
Score = 32.0 bits (73), Expect = 0.099
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 139 VCVSRAPRGKK-KSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGDVKDD 197
V V R +G+ K+VTV+TG+ + LK +K R G ++ D I IQGD +
Sbjct: 43 VRVRRETKGRGGKTVTVITGVPLAEDALKELAKELKRRCGTGGTLK-DGVIEIQGDHVEL 101
Query: 198 LFD 200
L
Sbjct: 102 LLA 104
>gnl|CDD|225651 COG3109, ProQ, Activator of osmoprotectant transporter ProP [Signal
transduction mechanisms].
Length = 208
Score = 29.8 bits (67), Expect = 0.99
Identities = 14/73 (19%), Positives = 32/73 (43%)
Query: 91 DEDATEEKKRQKRGGKGIVKARKKEEVPKQRGGKGIVKARKKEEVPKQVCVSRAPRGKKK 150
+E+ E ++Q K V+A++ E+ K+R + E P + +++
Sbjct: 92 EEEHVEHARKQLAEAKARVQAQRAEQQAKKREEAPAAGEKPTAERPATAARPKPKAPREE 151
Query: 151 SVTVVTGLSSFDI 163
T V+ +S+ +
Sbjct: 152 VHTPVSDISALTV 164
>gnl|CDD|224454 COG1537, PelA, Predicted RNA-binding proteins [General function
prediction only].
Length = 352
Score = 29.6 bits (67), Expect = 1.5
Identities = 20/101 (19%), Positives = 34/101 (33%), Gaps = 22/101 (21%)
Query: 137 KQVCVSRAPRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGD--V 194
+ R+ K + D++ KFF D I++ G
Sbjct: 155 IILGKIRSGIPGK-----------REGDIRAERKFFDEIAKALKEYANLDIIIVAGPGFA 203
Query: 195 KDDLFDVIPEKWPEIDEDFIEDLGD---------LKSPTYN 226
K+D +D + E++PE+ IED LK +
Sbjct: 204 KEDFYDFLRERYPELANIVIEDTSTGGRAGINEVLKRGAVD 244
>gnl|CDD|236418 PRK09225, PRK09225, threonine synthase; Validated.
Length = 462
Score = 29.3 bits (67), Expect = 1.7
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 187 EIVIQGDVKDD-LFDVIPEKWPEIDEDFIEDLGDL 220
E V+QG D L+ +PE+ P++ + I+ L L
Sbjct: 17 EAVLQGLAPDGGLY--VPEELPKLSAEEIDALLGL 49
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this
family are typically between 146 and 237 amino acids in
length. There are two conserved sequence motifs: QYGP
and PKLY.
Length = 155
Score = 28.6 bits (64), Expect = 2.0
Identities = 16/82 (19%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Query: 71 LEKNLPEEFEKLVKLSGDGGDEDATEEKKRQKRGGKGIVKARKKEEVPKQRGGKGIVKAR 130
L +NLP ++ +LS +E+ TEE+ + + + + + + K+R +
Sbjct: 77 LVRNLPAMWKIFRELSSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEK 136
Query: 131 KKEEVPKQVCVSRAPRGKKKSV 152
+K + P+ K S
Sbjct: 137 EKPK--------TEPKKPKPSK 150
>gnl|CDD|235502 PRK05560, PRK05560, DNA gyrase subunit A; Validated.
Length = 805
Score = 29.2 bits (67), Expect = 2.3
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 99 KRQKRGGKGIVKARKKEE 116
+ Q+RGGKG+ A+ KE+
Sbjct: 519 RAQRRGGKGVSGAKTKED 536
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 29.1 bits (65), Expect = 2.6
Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
Query: 72 EKNLPEEFEKLVKLSGDGGDEDATEEKKRQKRGGKGIVKARKKEEVPKQRGGKGIVKARK 131
EK P+E EK K D EEKKR++ V+A+ + + P ++ K
Sbjct: 139 EKRPPKEKEK-EKEKKVEEPRDREEEKKRER------VRAKSRPKKPPKKKPPNKKKEPP 191
Query: 132 KEEVPKQVCVSRAPRGKK 149
+EE +Q +
Sbjct: 192 EEEKQRQAAREAVKGKPE 209
Score = 27.2 bits (60), Expect = 9.4
Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
Query: 94 ATEEKKRQKRGGKGIVKARKKEEVPKQRGGKGIVKARKKEEVPKQVCVSRAPRGKK 149
A E K + + K++ +++ K K K+ PK+ + P +K
Sbjct: 95 AKEPKNESGKEEE----KEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEK 146
>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein. The proteins in this family
are designated YL1. These proteins have been shown to be
DNA-binding and may be a transcription factor.
Length = 238
Score = 28.5 bits (64), Expect = 2.6
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 86 SGDGGDEDATEEKKRQKRGGKGIVKARKKEEVPKQRGGKGIVKARKKEEVPKQVCVSRAP 145
D + D EE +++ + + + +KK+ V + + K +KK+ + + AP
Sbjct: 62 EDDEPESDDEEEGEKELQREE---RLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAP 118
Query: 146 RGKKKS 151
R KKKS
Sbjct: 119 RPKKKS 124
>gnl|CDD|235810 PRK06473, PRK06473, NAD(P)H-quinone oxidoreductase subunit D4;
Validated.
Length = 500
Score = 28.5 bits (64), Expect = 3.2
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
Query: 2 SPGCTTTIGVNTQLFLLFPVMTESDVKKP-------LPNGPQEGVNYPISVLYCG 49
P + T+ ++TQL LL P++ +K P LP+ E + P+SVL G
Sbjct: 192 EPLRSHTLPLSTQLLLLAPILVGFGIKIPLVPFHTWLPDAHVEA-STPVSVLLAG 245
>gnl|CDD|226348 COG3827, COG3827, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 231
Score = 28.3 bits (63), Expect = 3.5
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 11/39 (28%)
Query: 68 KVWLEKNLPEEFEKLVKLSGDGGDEDATEEKKRQKRGGK 106
+ WL+KNLP E+LV+ EE +R RG K
Sbjct: 203 QDWLDKNLPTLVERLVR-----------EEIERVVRGSK 230
>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional.
Length = 1465
Score = 28.7 bits (64), Expect = 3.9
Identities = 26/125 (20%), Positives = 38/125 (30%), Gaps = 17/125 (13%)
Query: 62 PEYEKCKVWLEKNLPEEFEKLVKLSGDGGDEDATEEKKRQKRGGKGIVKARKKEEVP--- 118
P+ K +K E + S E+ E K + R G +E
Sbjct: 1202 PKKPAPKKTTKKASESETTEETYGSSAMETENVAEVVKPKGRAGAKKKAPAAAKEKEEED 1261
Query: 119 -----KQRGGKGIVKAR-----KKEEVPKQVCVSRAPRGKKKSVTVVTGLSS----FDID 164
K R + + K EE K V RA KK +V S D
Sbjct: 1262 EILDLKDRLAAYNLDSAPAQSAKMEETVKAVPARRAAARKKPLASVSVISDSDDDDDDFA 1321
Query: 165 LKVAS 169
++V+
Sbjct: 1322 VEVSL 1326
>gnl|CDD|112770 pfam03971, IDH, Monomeric isocitrate dehydrogenase.
NADP(+)-dependent isocitrate dehydrogenase (ICD) is an
important enzyme of the intermediary metabolism, as it
controls the carbon flux within the citric acid cycle
and supplies the cell with 2-oxoglutarate EC:1.1.1.42
and NADPH for biosynthetic purposes.
Length = 735
Score = 28.3 bits (63), Expect = 4.3
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 163 IDLKVASKFFGTRFACGSSVTGDDEIVIQGDV-KDDLFDVIP 203
+D+++ S RF+ G D I + G+V +D L D+ P
Sbjct: 510 LDIRIMSPVEAMRFSLERLKRGQDTISVTGNVLRDYLTDLFP 551
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 28.2 bits (62), Expect = 5.7
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Query: 72 EKNLPEEFEKLVKLSGDGGDE--DATEEKKRQKRGGKGIVKARKKEEVPKQRGGKGIVKA 129
E +E +K + + DE A E KK+ K +A+K +E K K +A
Sbjct: 1481 EAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKA-EEAKKADEAKKAEEAKKADEA 1539
Query: 130 RKKEEVPKQVCVSRAPRGKK 149
+K EE K + +A KK
Sbjct: 1540 KKAEEKKKADELKKAEELKK 1559
Score = 27.4 bits (60), Expect = 8.1
Identities = 15/54 (27%), Positives = 24/54 (44%)
Query: 96 EEKKRQKRGGKGIVKARKKEEVPKQRGGKGIVKARKKEEVPKQVCVSRAPRGKK 149
EE ++ + K ARK EE K + +ARK E+ + +A +K
Sbjct: 1112 EEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARK 1165
>gnl|CDD|226410 COG3894, COG3894, Uncharacterized metal-binding protein [General
function prediction only].
Length = 614
Score = 27.8 bits (62), Expect = 5.9
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 14/99 (14%)
Query: 129 ARKKEEVPKQVCVSRAPRGKKKSVTVVTG----LSSFDIDLKVASKFFGTRFACGSSVTG 184
AR+ + VC + GK + V V G +SS D + + + G R AC + V G
Sbjct: 24 ARRLGVYIRSVCGGKGTCGKCQ-VVVQEGNHKIVSSTDHEKYLRER--GYRLACQAQVLG 80
Query: 185 DDEIVIQGD-------VKDDLFDVIPEKWPEIDEDFIED 216
D I I + V+ D + + E+ P + + ++ED
Sbjct: 81 DLVIFIPPESRLERQKVRKDAIERVIERNPAVRKCYVED 119
>gnl|CDD|221668 pfam12619, MCM2_N, Mini-chromosome maintenance protein 2. This
domain family is found in eukaryotes, and is typically
between 138 and 153 amino acids in length. The family is
found in association with pfam00493. Mini-chromosome
maintenance (MCM) proteins are essential for DNA
replication. These proteins use ATPase activity to
perform this function.
Length = 145
Score = 26.9 bits (60), Expect = 6.3
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 207 PEIDEDFIEDLGDLKSPTY 225
P +E +EDL D+K+ +
Sbjct: 127 PLEEELSLEDLSDVKAASI 145
>gnl|CDD|129282 TIGR00178, monomer_idh, isocitrate dehydrogenase, NADP-dependent,
monomeric type. The monomeric type of isocitrate
dehydrogenase has been found so far in a small number of
species, including Azotobacter vinelandii,
Corynebacterium glutamicum, Rhodomicrobium vannielii,
and Neisseria meningitidis. It is NADP-specific [Energy
metabolism, TCA cycle].
Length = 741
Score = 27.5 bits (61), Expect = 7.1
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 163 IDLKVASKFFGTRFACGSSVTGDDEIVIQGDV-KDDLFDVIP 203
+D+++ S TRF+ G+D I + G+V +D L D+ P
Sbjct: 514 LDIQILSPVEATRFSLARIRRGEDTISVTGNVLRDYLTDLFP 555
>gnl|CDD|216558 pfam01536, SAM_decarbox, Adenosylmethionine decarboxylase. This is
a family of S-adenosylmethionine decarboxylase (SAMDC)
proenzymes. In the biosynthesis of polyamines SAMDC
produces decarboxylated S-adenosylmethionine, which
serves as the aminopropyl moiety necessary for
spermidine and spermine biosynthesis from putrescine.
The Pfam alignment contains both the alpha and beta
chains that are cleaved to form the active enzyme.
Length = 328
Score = 27.3 bits (61), Expect = 8.0
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 162 DIDLKVASKFFGTRFACGSSVT---GDDEIVIQGDVKDD-LFD 200
+D + AS FF + + +T G +I+ + D F+
Sbjct: 179 GLDKEKASVFFKDESSSAADMTEASGIRKILPNSAICHDFDFE 221
>gnl|CDD|152569 pfam12134, PRP8_domainIV, PRP8 domain IV core. This domain is
found in eukaryotes, and is about 20 amino acids in
length. It is found associated with pfam10597,
pfam10596, pfam10598, pfam08083, pfam08082, pfam01398,
pfam08084. There is a conserved LILR sequence motif. The
domain is a selenomethionine domain in a subunit of the
spliceosome. The function of PRP8 domain IV is believed
to be interaction with the splicosomal core.
Length = 231
Score = 27.0 bits (60), Expect = 9.1
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 7/43 (16%)
Query: 101 QKRGGKGIVKARKKEEVPKQRGGKGIVKARKKEEVPKQVCVSR 143
QKR + + K + EEV ++++ KEE PKQ+ V+R
Sbjct: 71 QKRLSQ-LAKWKTAEEV------AALIRSLPKEEQPKQIIVTR 106
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.138 0.415
Gapped
Lambda K H
0.267 0.0685 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,604,326
Number of extensions: 1212407
Number of successful extensions: 1117
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1085
Number of HSP's successfully gapped: 60
Length of query: 243
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 149
Effective length of database: 6,768,326
Effective search space: 1008480574
Effective search space used: 1008480574
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.2 bits)