RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14509
(243 letters)
>2ogh_A Eukaryotic translation initiation factor EIF-1; alpha-beta protein;
NMR {Saccharomyces cerevisiae}
Length = 108
Score = 67.2 bits (164), Expect = 1e-14
Identities = 17/83 (20%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 137 KQVCVSRAPRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVT----GDDEIVIQG 192
+ + R +K++T V G+ + DLK K FAC ++ + I +QG
Sbjct: 24 NYIHIRIQQRNGRKTLTTVQGVPE-EYDLKRILKVLKKDFACNGNIVKDPEMGEIIQLQG 82
Query: 193 DVKDDLFDVIPEKWPEIDEDFIE 215
D + + + + + + + I+
Sbjct: 83 DQRAKVCEFMISQLG-LQKKNIK 104
>2if1_A EIF1, SUI1; translation initiation factor; NMR {Homo sapiens} SCOP:
d.64.1.1
Length = 126
Score = 67.3 bits (164), Expect = 1e-14
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 136 PKQVCVSRAPRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVT----GDDEIVIQ 191
+ + R +K++T V G++ D D K K F +FAC +V + I +Q
Sbjct: 41 EDYIHIRIQQRNGRKTLTTVQGIA-DDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQ 99
Query: 192 GDVKDDLFDVIPEK 205
GD + ++ + E
Sbjct: 100 GDQRKNICQFLVEI 113
>1d1r_A Hypothetical 11.4 KD protein YCIH in PYRF-OSMB intergenic region;
alpha-beta plait, open-faced beta sandwich,
ferredoxin-like fold; NMR {Escherichia coli} SCOP:
d.64.1.1
Length = 116
Score = 66.8 bits (163), Expect = 2e-14
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 130 RKKEEVPKQVCVSRAPRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIV 189
R K + ++ + R K V ++TG+ D +L + + CG +V D I
Sbjct: 26 RPKGDGVVRIQRQTSGRKGK-GVCLITGVDLDDAELTKLAAELKKKCGCGGAVK-DGVIE 83
Query: 190 IQGDVKDDLFDVIPEK 205
IQGD +D L ++ K
Sbjct: 84 IQGDKRDLLKSLLEAK 99
>2xzm_F EIF1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_F
Length = 101
Score = 61.8 bits (150), Expect = 9e-13
Identities = 16/91 (17%), Positives = 37/91 (40%), Gaps = 6/91 (6%)
Query: 129 ARKKEEVPKQVCVSRAPRGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDE- 187
++ + + R +K T V G+ + D + K++ +C +++ +DE
Sbjct: 9 ENNIDDFQTHIHIRVEQRRGRKCFTTVEGIPP-EFDYEKIMKYWKKWLSCNATIVEEDEG 67
Query: 188 ---IVIQGDVKDDLFDVIPEKWPEIDEDFIE 215
I + GD ++ + + E+ D I
Sbjct: 68 KKVIKLNGDHRNQIQQFLSEEG-IAAVDNIT 97
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.0 bits (119), Expect = 3e-07
Identities = 48/255 (18%), Positives = 73/255 (28%), Gaps = 88/255 (34%)
Query: 9 IGVNTQLFLLFPV--MTESDVKKPLPNGPQEGVNYPISVLYCGNCSLP-----VEYCEYH 61
IGV +P + S ++ L N EGV P +L N + V H
Sbjct: 306 IGVRCYE--AYPNTSLPPSILEDSLENN--EGV--PSPMLSISNLTQEQVQDYVNKTNSH 359
Query: 62 -PEYEKCKVWLEKNLPEEFEKLVKLSGDGGDEDATEEKKRQKRGGKGIVKARKKEEVPKQ 120
P ++ ++ L N + V +SG P+
Sbjct: 360 LPAGKQVEISL-VNGAKNL---V-VSGP-----------------------------PQS 385
Query: 121 RGGKGIVKARKKEEVPKQVCVSRAPRGKKKSVTVVTGL-------SSFDIDLKVASKFFG 173
G+ +K + P + SR P ++K L S L AS
Sbjct: 386 L--YGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHL---LVPASDLIN 440
Query: 174 TRFACG--------------SSVTGDDEIVIQGDVKDDLFDVI---PEKWPEIDE----- 211
+ G D V+ G + + + D I P KW +
Sbjct: 441 KDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATH 500
Query: 212 --DF----IEDLGDL 220
DF LG L
Sbjct: 501 ILDFGPGGASGLGVL 515
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.10
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Query: 186 DEIVIQGDVKDD---LFDVIPEKWPEIDEDFIEDLGDLKSPTYN 226
D I++ D LF + K E+ + F+E++ L+ Y
Sbjct: 52 DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV--LR-INYK 92
Score = 32.1 bits (72), Expect = 0.20
Identities = 20/113 (17%), Positives = 33/113 (29%), Gaps = 19/113 (16%)
Query: 4 GCT---TTIGVNTQLFLLFPVMTESDVKKPLPN-GPQEGVNYPISVLYCGNCSLPVEYCE 59
C TT FL T + P E + + L C LP E
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324
Query: 60 YHPEY-----EKCKV-------WLEKNLPEEFEKLVKLSGDGGDEDATEEKKR 100
+P E + W N ++ +++ S + + E +K
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNC-DKLTTIIESSLN--VLEPAEYRKM 374
Score = 27.1 bits (59), Expect = 6.5
Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 8/52 (15%)
Query: 58 CEYHPEYEKCKVWLEKNLPE--------EFEKLVKLSGDGGDEDATEEKKRQ 101
C+ P+YE+ + LP+ ++ L++++ DE EE +Q
Sbjct: 535 CDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQ 586
Score = 27.1 bits (59), Expect = 6.7
Identities = 8/54 (14%), Positives = 13/54 (24%), Gaps = 23/54 (42%)
Query: 36 QEGVNYPISVLYCGNCSLPVEYCEYHPEYEKCKVW--LEKNLPEEF-EKLVKLS 86
+ P +L +W + K+ KL K S
Sbjct: 382 PPSAHIPTILL--------------------SLIWFDVIKSDVMVVVNKLHKYS 415
>3v7n_A Threonine synthase; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease, lyase; 1.40A
{Burkholderia thailandensis}
Length = 487
Score = 32.3 bits (74), Expect = 0.12
Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 170 KFFGTRFACGSSVTGDDEIVIQGDVKDD-LFDVIPEKWPEIDEDFIEDLGDL 220
+ TR A +I++ G KD L+ +P ++P++ D + L
Sbjct: 6 NYISTRGAGIGERHTFSDILLGGLAKDGGLY--LPSEYPQVSADELARWRTL 55
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid
synthesis, rossmann-like fold, enoyl-ACP reductas
binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} PDB:
3oif_A* 2qio_A* 3oje_A 3ojf_A*
Length = 266
Score = 31.0 bits (71), Expect = 0.25
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 5/35 (14%)
Query: 181 SVTGDDEIVIQGDVKDD-----LFDVIPEKWPEID 210
++ +D I++ DV +D F I E+ I
Sbjct: 55 TLDRNDSIILPCDVTNDAEIETCFASIKEQVGVIH 89
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.5 bits (68), Expect = 0.31
Identities = 6/61 (9%), Positives = 18/61 (29%), Gaps = 7/61 (11%)
Query: 63 EYEKCKVWLEKNLP-------EEFEKLVKLSGDGGDEDATEEKKRQKRGGKGIVKARKKE 115
E E + W E+ + + +++ ++ K + R +
Sbjct: 83 EPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD 142
Query: 116 E 116
+
Sbjct: 143 K 143
>4alk_A ENR, enoyl-[acyl-carrier-protein] reductase [NADPH];
oxidoreductase, short-chain dehydrogenase/reductase
superfam fatty acid biosynthesis; HET: NAP E9P GLU;
1.90A {Staphylococcus aureus} PDB: 4alj_A* 4ali_A*
4alm_A 4aln_A 3gr6_A* 3gns_A* 3gnt_A 4all_A*
Length = 282
Score = 30.7 bits (70), Expect = 0.35
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 5/35 (14%)
Query: 181 SVTGDDEIVIQGDVKDD-----LFDVIPEKWPEID 210
+ + + Q DV+ D F+ I + ID
Sbjct: 80 QLNQPEAHLYQIDVQSDEEVINGFEQIGKDVGNID 114
>1vb3_A Threonine synthase; PLP-dependent enzyme, lyase; HET: KPA; 2.20A
{Escherichia coli} SCOP: c.79.1.1
Length = 428
Score = 30.7 bits (70), Expect = 0.37
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 187 EIVIQGDVKDD-LFDVIPEKWPEIDEDFIEDLGDL 220
+ V QG K+ LF P PE I+++ L
Sbjct: 17 QAVTQGLGKNQGLF--FPHDLPEFSLTEIDEMLKL 49
>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics,
protein structure initiative; HET: MSE XUL EPE; 1.61A
{Yersinia pseudotuberculosis} PDB: 3gg4_A*
Length = 554
Score = 30.8 bits (70), Expect = 0.48
Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 9/36 (25%)
Query: 47 YCGNCSLPVEYCEYHPEYEKCKV-WLEKNLPEEFEK 81
+ G PE + K+ WL++++P +
Sbjct: 133 FVGG--------VISPEMQTPKLLWLKQHMPNTWSN 160
>4f4f_A Threonine synthase; structural genomics, niaid, national institute
of allergy AN infectious diseases; HET: PLP; 1.90A
{Brucella melitensis BV}
Length = 468
Score = 30.3 bits (69), Expect = 0.49
Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
Query: 170 KFFGTRFACGSSVTGD-DEIVIQGDVKDD-LFDVIPEKWPEIDEDFIEDLGDL 220
K+ TR G + + ++ G +D L+ +P+++P+ + I L
Sbjct: 7 KYVSTR---GEAPVLGFSDALLAGLARDGGLY--LPQEYPQFTAEQIRALRGK 54
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH
BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella
tularensis subsp} PDB: 2jjy_A*
Length = 280
Score = 29.5 bits (67), Expect = 0.88
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 5/31 (16%)
Query: 185 DDEIVIQGDVKDD-----LFDVIPEKWPEID 210
+ V+ DV D LF + + W +D
Sbjct: 75 NPAAVLPCDVISDQEIKDLFVELGKVWDGLD 105
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta
pinwheel, DNA wrapping, isomerase, DNA bindng protein;
HET: DNA; 2.60A {Escherichia coli}
Length = 307
Score = 29.4 bits (67), Expect = 0.94
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 99 KRQKRGGKGIVKARKKEE 116
+ Q+RGGKG AR KEE
Sbjct: 24 EAQRRGGKGKSAARIKEE 41
>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid
biosynthesis, oxidation reduction; 1.50A {Thermus
thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*
Length = 261
Score = 29.1 bits (66), Expect = 1.0
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 5/31 (16%)
Query: 185 DDEIVIQGDVKDD-----LFDVIPEKWPEID 210
++ + DV D LF + E + +D
Sbjct: 58 GGALLFRADVTQDEELDALFAGVKEAFGGLD 88
>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid,
structural genomics, seattle structural genomics center
for infectious disease; 2.35A {Brucella melitensis} PDB:
4eit_A*
Length = 293
Score = 29.1 bits (66), Expect = 1.0
Identities = 7/31 (22%), Positives = 14/31 (45%), Gaps = 5/31 (16%)
Query: 185 DDEIVIQGDVKDD-----LFDVIPEKWPEID 210
+ DV D +F+ + +KW ++D
Sbjct: 81 GAFVAGHCDVADAASIDAVFETLEKKWGKLD 111
>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI,
UW, decode, eonyl-(acyl-carrier-PR reductase, NAD,
oxidoreductase; HET: NAD; 1.80A {Anaplasma
phagocytophilum} PDB: 3k2e_A*
Length = 296
Score = 29.1 bits (66), Expect = 1.1
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Query: 185 DDEIVIQGDVKDD-----LFDVIPEKWPEID 210
++ + DV D +F V+ E+W +D
Sbjct: 80 GVKLTVPCDVSDAESVDNMFKVLAEEWGSLD 110
>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase,
oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia
coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A*
1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A*
1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*
Length = 265
Score = 29.1 bits (66), Expect = 1.1
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 5/31 (16%)
Query: 185 DDEIVIQGDVKDD-----LFDVIPEKWPEID 210
+IV+Q DV +D +F + + WP+ D
Sbjct: 59 GSDIVLQCDVAEDASIDTMFAELGKVWPKFD 89
>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent
enoyl-ACP reductase, FABI, aquifex A VF5, structural
genomics, PSI; 2.00A {Aquifex aeolicus}
Length = 285
Score = 29.1 bits (66), Expect = 1.1
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 5/31 (16%)
Query: 185 DDEIVIQGDVKDD-----LFDVIPEKWPEID 210
++V++ DV D L + E W +D
Sbjct: 71 GSDLVVKCDVSLDEDIKNLKKFLEENWGSLD 101
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller,
beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia
burgdorferi} SCOP: b.68.10.1
Length = 312
Score = 29.0 bits (66), Expect = 1.1
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 99 KRQKRGGKGIVKARKKEE 116
K Q GGKG+ +
Sbjct: 29 KLQGTGGKGLSSFDLNDG 46
>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial
target, type II fatty acid biosynthesis,
enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A
{Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*
Length = 275
Score = 29.1 bits (66), Expect = 1.2
Identities = 5/31 (16%), Positives = 13/31 (41%), Gaps = 5/31 (16%)
Query: 185 DDEIVIQGDVKDD-----LFDVIPEKWPEID 210
+ V + DV + L++ + + +D
Sbjct: 56 NSPYVYELDVSKEEHFKSLYNSVKKDLGSLD 86
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase,
isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Length = 327
Score = 29.0 bits (66), Expect = 1.2
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 99 KRQKRGGKGIVKARKKEE 116
+ QKRGGKG+ A K++
Sbjct: 24 RSQKRGGKGVQGAGLKQD 41
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid,
oxidoreductase, structural genomics; 1.90A {Burkholderia
pseudomallei 1710B}
Length = 271
Score = 29.1 bits (66), Expect = 1.2
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 5/31 (16%)
Query: 185 DDEIVIQGDVKDD-----LFDVIPEKWPEID 210
E+V DV DD LF + W +D
Sbjct: 64 GSELVFPCDVADDAQIDALFASLKTHWDSLD 94
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA
C-terminal domain, DNA wrapping, beta-strand-bearing
proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas
campestris PV}
Length = 370
Score = 29.1 bits (66), Expect = 1.3
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 99 KRQKRGGKGIVKARKKEE 116
+ Q+RGG+G A KEE
Sbjct: 28 RAQRRGGRGRSAASTKEE 45
>2hah_A Protease, retropepsin; retroviral, aspartyl, hydrolase-hydrolase
complex; HET: 3TL; 1.70A {Feline immunodeficiency virus}
PDB: 3ogp_A* 3ogq_A* 2fiv_A* 6fiv_A* 3fiv_A* 5fiv_A*
4fiv_A* 1fiv_A* 1b11_A*
Length = 116
Score = 28.0 bits (62), Expect = 1.3
Identities = 9/71 (12%), Positives = 17/71 (23%), Gaps = 11/71 (15%)
Query: 113 KKEEVPKQRGG-KGIVKARKKEEVPKQVCVSRAPRGKKKSVTVVTGLSSFDIDLKVASKF 171
E + GG G ++ V ++ + + G D
Sbjct: 48 SIENGRQMIGGIGGFIRGTNYINVHLEIR------DENYKTQCIFGNVCVLEDNSTPVNI 101
Query: 172 FG----TRFAC 178
G +F
Sbjct: 102 LGRDNMIKFNI 112
>3jvp_A Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, sugar kinase,
crsytal structure, structural genomics, protein
structure initiative; HET: 5RP; 2.31A {Bacillus
halodurans} PDB: 3qdk_A*
Length = 572
Score = 29.3 bits (66), Expect = 1.4
Identities = 4/36 (11%), Positives = 10/36 (27%), Gaps = 9/36 (25%)
Query: 47 YCGNCSLPVEYCEYHPEYEKCKV-WLEKNLPEEFEK 81
G + E+ KV + + + +
Sbjct: 152 RYGG--------KISSEWMIAKVWQILDEAEDVYNR 179
>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human
immunodeficiency virus type 2} SCOP: b.50.1.1 PDB:
1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A*
3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A
3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ...
Length = 99
Score = 27.0 bits (60), Expect = 2.3
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 7/47 (14%)
Query: 118 PKQRGG-KGIVKARKKEEVPKQVCVSRAPRGKKKSVTVVTGLSSFDI 163
PK GG G + ++ + V +V KK T++TG + +I
Sbjct: 44 PKIVGGIGGFINTKEYKNVEIEVL------NKKVRATIMTGDTPINI 84
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT;
protein-protein complex, translation; HET: MSE; 2.20A
{Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Length = 291
Score = 27.8 bits (62), Expect = 3.2
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 89 GGDEDATEEKKRQKRGGKGIVKARKK 114
GGD E ++ +G KA +
Sbjct: 30 GGDLKQAESWLHKQAQKEGWSKAARL 55
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding
site, HYDR; HET: 017; 0.84A {Human immunodeficiency
virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A*
3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A*
2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A*
3b7v_A* ...
Length = 99
Score = 25.8 bits (57), Expect = 5.2
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 7/47 (14%)
Query: 118 PKQRGG-KGIVKARKKEEVPKQVCVSRAPRGKKKSVTVVTGLSSFDI 163
PK GG G +K R+ +++ ++ G K TV+ G + +I
Sbjct: 44 PKMIGGIGGFIKVRQYDQIIIEIA------GHKAIGTVLVGPTPVNI 84
>1kl7_A Threonine synthase; threonine synthesis, pyridoxal 5-phosphate,
beta-family, MON lyase; HET: PLP; 2.70A {Saccharomyces
cerevisiae} SCOP: c.79.1.1
Length = 514
Score = 27.4 bits (61), Expect = 5.8
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 10/59 (16%)
Query: 170 KFFGTRFACGSSVTGDD--EIVIQGDVKDD-LFDVIPEKWPEIDEDFIEDLGDLKSPTY 225
+ TR SS E +IQG D LF IP P++D+ + + D ++
Sbjct: 7 VYRSTR---SSSPKTISFEEAIIQGLATDGGLF--IPPTIPQVDQATLFN--DWSKLSF 58
>3qsl_A Putative exported protein; unknown, structural genomics,
PSI-biology, midwest center FO structural genomics,
MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella
bronchiseptica}
Length = 346
Score = 27.2 bits (60), Expect = 5.8
Identities = 14/80 (17%), Positives = 23/80 (28%), Gaps = 13/80 (16%)
Query: 26 DVKKPLPNGPQEGVNYPISVLYCGNCSLPVEYCEYHPE--------YEKCKVWLEKNLPE 77
D + G N P LY + + +P + W++K +
Sbjct: 212 DTRTLKDTKEIFGGNMPAGCLYAPQ-----AFVDANPNTAQALTNAIVRADKWIQKAGAD 266
Query: 78 EFEKLVKLSGDGGDEDATEE 97
E K V GD +
Sbjct: 267 EIAKAVPEGYLLGDPAVYKA 286
>2npb_A Selenoprotein W; structure, thioredoxin-like fold,
oxidoreductase; NMR {Mus musculus}
Length = 96
Score = 25.8 bits (56), Expect = 6.0
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 11/47 (23%)
Query: 43 ISVLYCGNCSLPVEYCEYHPEYEKCKVWLEKNLPEEFEKLVKLSGDG 89
+ V+Y G C Y P+Y L++ L EF + + G+G
Sbjct: 5 VRVVYSGACG-------YKPKYL----QLKEKLEHEFPGCLDICGEG 40
>3ec6_A General stress protein 26; alpha-beta structure, structural
genomics of niaid; HET: FAD; 1.60A {Bacillus anthracis}
Length = 139
Score = 26.4 bits (58), Expect = 6.5
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 181 SVTGDDEIVIQGDVKDDLFDVIPEKWPEIDED 212
V G I +K+ ++ ++W ED
Sbjct: 79 EVEGLASIEEDSTLKNKFWNNSLKRWLLRPED 110
>2d6f_C Glutamyl-tRNA(Gln) amidotransferase subunit E; ligase, ligase/RNA
complex; 3.15A {Methanothermobacterthermautotrophicus}
SCOP: a.182.1.2 d.74.4.1 d.128.1.5
Length = 619
Score = 26.7 bits (59), Expect = 9.1
Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 3/53 (5%)
Query: 188 IVIQGDVKDDLFDVIPEKWPEIDEDFIEDLGDLKSPTYNIGKLCFTYTYYYFM 240
I+ D+ + + +PE E E + D G +L F
Sbjct: 429 FRIEDDLLEGIRRNLPELPSEKKERIMRDYG---LSEDLASQLVKRNLVDEFE 478
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.138 0.415
Gapped
Lambda K H
0.267 0.0745 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,886,730
Number of extensions: 240514
Number of successful extensions: 476
Number of sequences better than 10.0: 1
Number of HSP's gapped: 468
Number of HSP's successfully gapped: 49
Length of query: 243
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 152
Effective length of database: 4,160,982
Effective search space: 632469264
Effective search space used: 632469264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (25.3 bits)