RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14509
         (243 letters)



>d1d1ra_ d.64.1.1 (A:) YciH {Escherichia coli [TaxId: 562]}
          Length = 83

 Score = 63.5 bits (155), Expect = 4e-14
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 14/84 (16%)

Query: 123 GKGIVKARKKEEVPKQVCVSRAPRGKK-KSVTVVTGLSSFDIDLKVASKFFGTRFACGSS 181
           G G+V+            + R   G+K K V ++TG+   D +L   +     +  CG +
Sbjct: 2   GDGVVR------------IQRQTSGRKGKGVCLITGVDLDDAELTKLAAELKKKCGCGGA 49

Query: 182 VTGDDEIVIQGDVKDDLFDVIPEK 205
           V  D  I IQGD +D L  ++  K
Sbjct: 50  VK-DGVIEIQGDKRDLLKSLLEAK 72


>d2if1a_ d.64.1.1 (A:) Eukaryotic translation initiation factor
           eIF-1 (SUI1) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 126

 Score = 56.1 bits (135), Expect = 6e-11
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 6/74 (8%)

Query: 146 RGKKKSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVT----GDDEIVIQGDVKDDLFDV 201
           R  +K++T V G++  D D K   K F  +FAC  +V       + I +QGD + ++   
Sbjct: 51  RNGRKTLTTVQGIA-DDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQF 109

Query: 202 IPEKWPEIDEDFIE 215
           + E      +D ++
Sbjct: 110 LVEIG-LAKDDQLK 122


>d1vb3a1 c.79.1.1 (A:1-428) Threonine synthase {Escherichia coli
           [TaxId: 562]}
          Length = 428

 Score = 31.3 bits (70), Expect = 0.11
 Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 7/53 (13%)

Query: 170 KFFGTRFACGSSVTGD-DEIVIQGDVKDD-LFDVIPEKWPEIDEDFIEDLGDL 220
           K +  +     +      + V QG  K+  LF   P   PE     I+++  L
Sbjct: 2   KLYNLK---DHNEQVSFAQAVTQGLGKNQGLF--FPHDLPEFSLTEIDEMLKL 49


>d1duga1 a.45.1.1 (A:81-220) Class alpha GST {Schistosoma
          japonicum [TaxId: 6182]}
          Length = 140

 Score = 29.6 bits (66), Expect = 0.16
 Identities = 7/31 (22%), Positives = 10/31 (32%)

Query: 60 YHPEYEKCKVWLEKNLPEEFEKLVKLSGDGG 90
          Y  ++E  KV     LPE  +          
Sbjct: 30 YSKDFETLKVDFLSKLPEMLKMFEDRLCHKT 60


>d2fhea1 a.45.1.1 (A:81-216) Class alpha GST {Fasciola hepatica
          [TaxId: 6192]}
          Length = 136

 Score = 27.3 bits (60), Expect = 1.2
 Identities = 8/31 (25%), Positives = 13/31 (41%)

Query: 60 YHPEYEKCKVWLEKNLPEEFEKLVKLSGDGG 90
          Y P++E+ K    K+LP   +      G   
Sbjct: 30 YQPKFEQLKEGYLKDLPTTMKMWSDFLGKNP 60


>d1h3na1 a.27.1.1 (A:687-814) Leucyl-tRNA synthetase (LeuRS)
           {Thermus thermophilus [TaxId: 274]}
          Length = 128

 Score = 26.8 bits (58), Expect = 1.6
 Identities = 6/16 (37%), Positives = 9/16 (56%)

Query: 200 DVIPEKWPEIDEDFIE 215
            +    WPE+DE  +E
Sbjct: 112 SLFEAGWPELDEKALE 127


>d1w79a1 e.3.1.3 (A:1-467) D-alanyl-D-alanine carboxypeptidase Dac
           {Actinomadura sp. [TaxId: 1989]}
          Length = 467

 Score = 27.6 bits (60), Expect = 1.7
 Identities = 16/96 (16%), Positives = 23/96 (23%), Gaps = 7/96 (7%)

Query: 150 KSVTVVTGLSSFDIDLKVASKFFGTRFACGSSVTGDDEIVIQGD---VKDDLFDVIPEKW 206
           K  T    L     D    ++              D  +V +GD     +DL  +  E  
Sbjct: 52  KLFTAAAALEVLGADHSFGTEVAAESAPGRRGEVQDLYLVGRGDPTLSAEDLDAMAAEVA 111

Query: 207 ----PEIDEDFIEDLGDLKSPTYNIGKLCFTYTYYY 238
                 +  D   D     S             Y Y
Sbjct: 112 ASGVRTVRGDLYADDTWFDSERLVDDWWPEDEPYAY 147


>d1kl7a_ c.79.1.1 (A:) Threonine synthase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 511

 Score = 27.4 bits (60), Expect = 1.7
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 5/41 (12%)

Query: 187 EIVIQGDVKDD-LFDVIPEKWPEIDEDFIEDLGDLKSPTYN 226
           E +IQG   D  LF  IP   P++D+  + +  D    ++ 
Sbjct: 22  EAIIQGLATDGGLF--IPPTIPQVDQATLFN--DWSKLSFQ 58


>d1suua_ b.68.10.1 (A:) DNA gyrase A C-terminal domain {Lyme disease
           spirochete (Borrelia burgdorferi) [TaxId: 139]}
          Length = 304

 Score = 26.8 bits (58), Expect = 2.3
 Identities = 6/18 (33%), Positives = 8/18 (44%)

Query: 99  KRQKRGGKGIVKARKKEE 116
           K Q  GGKG+      + 
Sbjct: 22  KLQGTGGKGLSSFDLNDG 39


>d1fyhb2 b.1.2.1 (B:110-223) Interferon-gamma receptor alpha chain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 114

 Score = 25.6 bits (56), Expect = 2.8
 Identities = 5/23 (21%), Positives = 10/23 (43%)

Query: 218 GDLKSPTYNIGKLCFTYTYYYFM 240
           GD +   Y+    C+   Y  ++
Sbjct: 28  GDEQEVDYDPETTCYIRVYNVYV 50


>d1hvca_ b.50.1.1 (A:) Human immunodeficiency virus type 1 protease
           {Human immunodeficiency virus type 1 [TaxId: 11676]}
          Length = 203

 Score = 26.1 bits (58), Expect = 3.1
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 7/41 (17%)

Query: 118 PKQRGG-KGIVKARKKEEVPKQVCVSRAPRGKKKSVTVVTG 157
           PK  GG  G +K R+ +++  ++C      G K   TV+ G
Sbjct: 44  PKMIGGIGGFIKVRQYDQILIEIC------GHKAIGTVLVG 78


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.138    0.415 

Gapped
Lambda     K      H
   0.267   0.0552    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 977,862
Number of extensions: 49282
Number of successful extensions: 112
Number of sequences better than 10.0: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 18
Length of query: 243
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 160
Effective length of database: 1,268,006
Effective search space: 202880960
Effective search space used: 202880960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.2 bits)