BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14511
(488 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 172 bits (437), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 123/415 (29%), Positives = 199/415 (47%), Gaps = 85/415 (20%)
Query: 121 VKTDSQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQS-KRTVSPTQFLRTLG--- 176
+ ++Q N +T + +E +K L+ L+GF+++ K+L S K +P + L
Sbjct: 16 LSKENQPENSQTPTKKEHQKAWALN--LNGFDVEEAKILRLSGKPQNAPEGYQNRLKVLY 73
Query: 177 ----------KLPRKVKAKPERILEAPSIINDFYTSGLDWGYHDTLAVALDTSVYTWNTK 226
K R + + P+RIL+AP I ND+Y + +DW + LAVALD SVY W+
Sbjct: 74 SQKATPGSSRKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSAS 133
Query: 227 TNKT-QLL-VEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHM 284
+ QLL +E P YIS VAW LAV + E + LW Q+++ ++ + +H
Sbjct: 134 SGDILQLLQMEQP---GEYISSVAWIKEGNYLAVGTSSAE-VQLWDVQQQKRLRNMTSHS 189
Query: 285 HQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASG- 343
+V ++ WN +LS G+ G+I H+DVR + ++ VCGL+W+P+GR+LASG
Sbjct: 190 ARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGG 249
Query: 344 -------------------------------------------------SNNTVKIWD-- 352
S+ ++IW+
Sbjct: 250 NDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC 309
Query: 353 ----FRQLDAKRPLGLIV--PKLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQE 406
+DA + I+ P K EL++ HG L +W+YP + + ELK H
Sbjct: 310 SGACLSAVDAHSQVCSILWSPHYK----ELISGHGFAQNQLVIWKYPTMAKVAELKGHTS 365
Query: 407 RILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKARQVGSGSSLEFAILKQPV 461
R+LS +SPD VA+A+ADET+ +W CF D R+ R+ S+ + +++ Q +
Sbjct: 366 RVLSLTMSPDGATVASAAADETLRLWRCFELDPARR-REREKASAAKSSLIHQGI 419
Score = 102 bits (254), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 73/128 (57%), Gaps = 2/128 (1%)
Query: 1 MCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSN-NTV 59
+ WN +LS G+ G+I H+DVR + ++ VCGL+W+P+GR+LASG N N V
Sbjct: 195 LSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLV 254
Query: 60 KIWDFRQLDAK-RPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEK 118
+W + P H AVKA+AWCPW+ +LATGGG D+ +R+WN +G
Sbjct: 255 NVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 314
Query: 119 CHVKTDSQ 126
V SQ
Sbjct: 315 SAVDAHSQ 322
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 12/115 (10%)
Query: 32 ITREGDVVCGLKWSPNGRYLASGSNNT-VKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCP 90
+ + G+ + + W G YLA G+++ V++WD +Q R N H + V +++W
Sbjct: 143 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR---NMTSHSARVGSLSWNS 199
Query: 91 WEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQQANDETISYREQKKRRHLS 145
+ + + G I VR+ + HV T S + E R RHL+
Sbjct: 200 YILSSGSRSGHIHHHDVRV-------AEHHVATLSGHS-QEVCGLRWAPDGRHLA 246
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 9/75 (12%)
Query: 39 VCGLKWSPNGRYLASG---SNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTL 95
VC + WSP+ + L SG + N + IW + + AK ++ H S V ++ P T+
Sbjct: 323 VCSILWSPHYKELISGHGFAQNQLVIWKYPTM-AKVAELKG--HTSRVLSLTMSPDGATV 379
Query: 96 LATGGGICDQTVRLW 110
+ D+T+RLW
Sbjct: 380 ASAA---ADETLRLW 391
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 167 bits (423), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 122/415 (29%), Positives = 199/415 (47%), Gaps = 85/415 (20%)
Query: 121 VKTDSQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQS-KRTVSPTQFLRTLG--- 176
+ ++Q N +T + +E +K L+ L+GF+++ K+L S K +P + L
Sbjct: 27 LSKENQPENSQTPTKKEHQKAWALN--LNGFDVEEAKILRLSGKPQNAPEGYQNRLKVLY 84
Query: 177 ----------KLPRKVKAKPERILEAPSIINDFYTSGLDWGYHDTLAVALDTSVYTWNTK 226
K R + + P+RIL+AP I ND+Y + +DW + LAVALD SVY W+
Sbjct: 85 SQKATPGSSRKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSAS 144
Query: 227 TNKT-QLL-VEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHM 284
+ QLL +E P YIS VAW LAV + E + LW Q+++ ++ + +H
Sbjct: 145 SGDILQLLQMEQP---GEYISSVAWIKEGNYLAVGTSSAE-VQLWDVQQQKRLRNMTSHS 200
Query: 285 HQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY----- 339
+V ++ WN +LS G+ G+I H+DVR + ++ VCGL+W+P+GR+
Sbjct: 201 ARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGG 260
Query: 340 ------------------------------------------LASG---SNNTVKIWD-- 352
LA+G S+ ++IW+
Sbjct: 261 NDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC 320
Query: 353 ----FRQLDAKRPLGLIV--PKLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQE 406
+DA + I+ P K EL++ HG L +W+YP + + ELK H
Sbjct: 321 SGACLSAVDAHSQVCSILWSPHYK----ELISGHGFAQNQLVIWKYPTMAKVAELKGHTS 376
Query: 407 RILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKARQVGSGSSLEFAILKQPV 461
R+LS +SPD VA+A+ADET+ +W CF D R+ R+ S+ + +++ Q +
Sbjct: 377 RVLSLTMSPDGATVASAAADETLRLWRCFELDPARR-REREKASAAKSSLIHQGI 430
Score = 102 bits (254), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 73/128 (57%), Gaps = 2/128 (1%)
Query: 1 MCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSN-NTV 59
+ WN +LS G+ G+I H+DVR + ++ VCGL+W+P+GR+LASG N N V
Sbjct: 206 LSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLV 265
Query: 60 KIWDFRQLDAK-RPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEK 118
+W + P H AVKA+AWCPW+ +LATGGG D+ +R+WN +G
Sbjct: 266 NVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 325
Query: 119 CHVKTDSQ 126
V SQ
Sbjct: 326 SAVDAHSQ 333
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 12/115 (10%)
Query: 32 ITREGDVVCGLKWSPNGRYLASGSNNT-VKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCP 90
+ + G+ + + W G YLA G+++ V++WD +Q R N H + V +++W
Sbjct: 154 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR---NMTSHSARVGSLSWNS 210
Query: 91 WEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQQANDETISYREQKKRRHLS 145
+ + + G I VR+ + HV T S + E R RHL+
Sbjct: 211 YILSSGSRSGHIHHHDVRV-------AEHHVATLSGHSQ-EVCGLRWAPDGRHLA 257
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 9/75 (12%)
Query: 39 VCGLKWSPNGRYLASG---SNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTL 95
VC + WSP+ + L SG + N + IW + + AK ++ H S V ++ P T+
Sbjct: 334 VCSILWSPHYKELISGHGFAQNQLVIWKYPTM-AKVAELKG--HTSRVLSLTMSPDGATV 390
Query: 96 LATGGGICDQTVRLW 110
+ D+T+RLW
Sbjct: 391 ASAA---ADETLRLW 402
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 153 bits (386), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 100/318 (31%), Positives = 150/318 (47%), Gaps = 60/318 (18%)
Query: 177 KLPRKVKAKPERILEAPSIINDFYTSGLDWGYHDTLAVALDTSVYTWNTKTNKT-QLL-V 234
K R + + P+RIL+AP I ND+Y + +DW + LAVALD SVY W+ + QLL +
Sbjct: 4 KTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQM 63
Query: 235 EYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWNG 294
E P YIS VAW LAV + E + LW Q+++ ++ + +H +V ++ WN
Sbjct: 64 EQP---GEYISSVAWIKEGNYLAVGTSSAE-VQLWDVQQQKRLRNMTSHSARVGSLSWNS 119
Query: 295 NLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSN-NTVKIW-- 351
+LS G+ G+I H+DVR + ++ VCGL+W+P+GR+LASG N N V +W
Sbjct: 120 YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 179
Query: 352 --------DFRQLDAKRPLGLIVPKLKREGRELVTSHGKQDCSLKMW------------- 390
+ + V + L T G D +++W
Sbjct: 180 APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA 239
Query: 391 ------------------------------EYPRLHLIEELKIHQERILSAVLSPDQTCV 420
+YP + + ELK H R+LS +SPD V
Sbjct: 240 HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATV 299
Query: 421 AAASADETISIWNCFPRD 438
A+A+ADET+ +W CF D
Sbjct: 300 ASAAADETLRLWRCFELD 317
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 73/128 (57%), Gaps = 2/128 (1%)
Query: 1 MCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSN-NTV 59
+ WN +LS G+ G+I H+DVR + ++ VCGL+W+P+GR+LASG N N V
Sbjct: 115 LSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLV 174
Query: 60 KIWDFRQLDAK-RPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEK 118
+W + P H AVKA+AWCPW+ +LATGGG D+ +R+WN +G
Sbjct: 175 NVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 234
Query: 119 CHVKTDSQ 126
V SQ
Sbjct: 235 SAVDAHSQ 242
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 12/115 (10%)
Query: 32 ITREGDVVCGLKWSPNGRYLASGSNNT-VKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCP 90
+ + G+ + + W G YLA G+++ V++WD +Q R N H + V +++W
Sbjct: 63 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR---NMTSHSARVGSLSWNS 119
Query: 91 WEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQQANDETISYREQKKRRHLS 145
+ + + G I VR+ + HV T S + E R RHL+
Sbjct: 120 YILSSGSRSGHIHHHDVRV-------AEHHVATLSGHSQ-EVCGLRWAPDGRHLA 166
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 9/75 (12%)
Query: 39 VCGLKWSPNGRYLASG---SNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTL 95
VC + WSP+ + L SG + N + IW + + AK ++ H S V ++ P T+
Sbjct: 243 VCSILWSPHYKELISGHGFAQNQLVIWKYPTM-AKVAELKG--HTSRVLSLTMSPDGATV 299
Query: 96 LATGGGICDQTVRLW 110
+ D+T+RLW
Sbjct: 300 ASAA---ADETLRLW 311
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 93/362 (25%), Positives = 151/362 (41%), Gaps = 77/362 (21%)
Query: 142 RHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAPSIINDFYT 201
R L+F L E KK ++ + P + + T K R+ PER+L+AP II+D+Y
Sbjct: 41 RVLAFKLDAPEA--KKPVDLRTQHNRPQRPVVTPAK--RRFNTTPERVLDAPGIIDDYYL 96
Query: 202 SGLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNT 261
+ LDW + +AVAL+ +VY WN + L E T ++ Y++ V W + L+V
Sbjct: 97 NLLDWSNLNVVAVALERNVYVWNADSGSVSALAE--TDESTYVASVKWSHDGSFLSV-GL 153
Query: 262 CTEYIDLWHEQEERLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAI 321
+D++ + + ++ + H +V + WN ++LS G+ G I H+DVR + +
Sbjct: 154 GNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTL 213
Query: 322 TREGDVVCGLKWSPNGRYLASGSN-NTVKIWDFRQLDAKRPLGLIVPKLKR--------- 371
VCGL W +G LASG N N V+IWD R +PK +
Sbjct: 214 QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS---------IPKFTKTNHNAAVKA 264
Query: 372 ------EGRELVTSHGKQDCSLKMW----------------------------------- 390
+ L T G D + W
Sbjct: 265 VAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGF 324
Query: 391 --------EYPRLHLIEELKI--HQERILSAVLSPDQTCVAAASADETISIWNCFPRDKK 440
Y L +++ I H R+L + LSPD ++ A++DE + W + D
Sbjct: 325 PDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV 384
Query: 441 RK 442
++
Sbjct: 385 KR 386
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 70/127 (55%), Gaps = 4/127 (3%)
Query: 1 MCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSN-NTV 59
+ WN ++LS G+ G I H+DVR + + VCGL W +G LASG N N V
Sbjct: 182 LSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVV 241
Query: 60 KIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKC 119
+IWD R + P+ H +AVKA+AWCPW+ LLATGGG D+ + WN+ G
Sbjct: 242 QIWDAR---SSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVN 298
Query: 120 HVKTDSQ 126
V SQ
Sbjct: 299 TVDAGSQ 305
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 98/202 (48%), Gaps = 14/202 (6%)
Query: 243 YISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWN--GNLLSCG 300
Y+ C + P++ +L V+ + E + +W + + ++ L H V A+ +N G+L+
Sbjct: 114 YVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 172
Query: 301 TIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY-LASGSNNTVKIWDFRQ---- 355
+ G +D + T I + V +K+SPNG+Y LA+ +NT+K+WD+ +
Sbjct: 173 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL 232
Query: 356 ---LDAKRPLGLIVPKLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAV 412
K I G + + S G +D + +W ++++L+ H + ++S
Sbjct: 233 KTYTGHKNEKYCIFANFSVTGGKWIVS-GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 291
Query: 413 LSPDQTCVAAASA--DETISIW 432
P + +A+A+ D+TI +W
Sbjct: 292 CHPTENIIASAALENDKTIKLW 313
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 316 DYPTAITREG--DVVCGLKWSPNGRYLASGS-NNTVKIW-----DFRQLDAKRPLGLIVP 367
+Y T G V +K+SPNG +LAS S + +KIW F + + LG+
Sbjct: 17 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 76
Query: 368 KLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADE 427
+ LV++ D +LK+W+ ++ LK H + +P + + S DE
Sbjct: 77 AWSSDSNLLVSA--SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 134
Query: 428 TISIWN 433
++ IW+
Sbjct: 135 SVRIWD 140
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 84/199 (42%), Gaps = 13/199 (6%)
Query: 244 ISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGT 301
+S V + P LA +++ + I +W + + + + H + + W + NLL +
Sbjct: 31 VSSVKFSPNGEWLA-SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 89
Query: 302 IGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKR 360
+ +DV + T V C ++P + SGS + +V+IWD + +
Sbjct: 90 DDKTLKIWDVSSGKCLKTLKGHSNYVFC-CNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 148
Query: 361 PLG-----LIVPKLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAV-LS 414
L + R+G +V+S C ++W+ ++ L +S V S
Sbjct: 149 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLC--RIWDTASGQCLKTLIDDDNPPVSFVKFS 206
Query: 415 PDQTCVAAASADETISIWN 433
P+ + AA+ D T+ +W+
Sbjct: 207 PNGKYILAATLDNTLKLWD 225
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 4 NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY-LASGSNNTVKIW 62
+G+L+ + G +D + T I + V +K+SPNG+Y LA+ +NT+K+W
Sbjct: 165 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 224
Query: 63 DFRQ 66
D+ +
Sbjct: 225 DYSK 228
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 27 DYPTAITREG--DVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAV 83
+Y T G V +K+SPNG +LAS S + +KIW D K + + H +
Sbjct: 17 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG--AYDGKFEKTISG-HKLGI 73
Query: 84 KAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK 116
+AW + LL + D+T+++W+ +GK
Sbjct: 74 SDVAWSS-DSNLLVSASD--DKTLKIWDVSSGK 103
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 98/202 (48%), Gaps = 14/202 (6%)
Query: 243 YISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWN--GNLLSCG 300
Y+ C + P++ +L V+ + E + +W + + ++ L H V A+ +N G+L+
Sbjct: 109 YVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 167
Query: 301 TIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY-LASGSNNTVKIWDFRQ---- 355
+ G +D + T I + V +K+SPNG+Y LA+ +NT+K+WD+ +
Sbjct: 168 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL 227
Query: 356 ---LDAKRPLGLIVPKLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAV 412
K I G + + S G +D + +W ++++L+ H + ++S
Sbjct: 228 KTYTGHKNEKYCIFANFSVTGGKWIVS-GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 286
Query: 413 LSPDQTCVAAASA--DETISIW 432
P + +A+A+ D+TI +W
Sbjct: 287 CHPTENIIASAALENDKTIKLW 308
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 316 DYPTAITREG--DVVCGLKWSPNGRYLASGS-NNTVKIW-----DFRQLDAKRPLGLIVP 367
+Y T G V +K+SPNG +LAS S + +KIW F + + LG+
Sbjct: 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 71
Query: 368 KLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADE 427
+ LV++ D +LK+W+ ++ LK H + +P + + S DE
Sbjct: 72 AWSSDSNLLVSA--SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 129
Query: 428 TISIWN 433
++ IW+
Sbjct: 130 SVRIWD 135
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 84/199 (42%), Gaps = 13/199 (6%)
Query: 244 ISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGT 301
+S V + P LA +++ + I +W + + + + H + + W + NLL +
Sbjct: 26 VSSVKFSPNGEWLA-SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 84
Query: 302 IGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKR 360
+ +DV + T V C ++P + SGS + +V+IWD + +
Sbjct: 85 DDKTLKIWDVSSGKCLKTLKGHSNYVFC-CNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 143
Query: 361 PLG-----LIVPKLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAV-LS 414
L + R+G +V+S C ++W+ ++ L +S V S
Sbjct: 144 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLC--RIWDTASGQCLKTLIDDDNPPVSFVKFS 201
Query: 415 PDQTCVAAASADETISIWN 433
P+ + AA+ D T+ +W+
Sbjct: 202 PNGKYILAATLDNTLKLWD 220
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 4 NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY-LASGSNNTVKIW 62
+G+L+ + G +D + T I + V +K+SPNG+Y LA+ +NT+K+W
Sbjct: 160 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 219
Query: 63 DFRQ 66
D+ +
Sbjct: 220 DYSK 223
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 27 DYPTAITREG--DVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAV 83
+Y T G V +K+SPNG +LAS S + +KIW D K + + H +
Sbjct: 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKTISG-HKLGI 68
Query: 84 KAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK 116
+AW + LL + D+T+++W+ +GK
Sbjct: 69 SDVAWSS-DSNLLVSASD--DKTLKIWDVSSGK 98
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 98/202 (48%), Gaps = 14/202 (6%)
Query: 243 YISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWN--GNLLSCG 300
Y+ C + P++ +L V+ + E + +W + + ++ L H V A+ +N G+L+
Sbjct: 110 YVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 168
Query: 301 TIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY-LASGSNNTVKIWDFRQ---- 355
+ G +D + T I + V +K+SPNG+Y LA+ +NT+K+WD+ +
Sbjct: 169 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL 228
Query: 356 ---LDAKRPLGLIVPKLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAV 412
K I G + + S G +D + +W ++++L+ H + ++S
Sbjct: 229 KTYTGHKNEKYCIFANFSVTGGKWIVS-GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 287
Query: 413 LSPDQTCVAAASA--DETISIW 432
P + +A+A+ D+TI +W
Sbjct: 288 CHPTENIIASAALENDKTIKLW 309
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 316 DYPTAITREG--DVVCGLKWSPNGRYLASGS-NNTVKIW-----DFRQLDAKRPLGLIVP 367
+Y T G V +K+SPNG +LAS S + +KIW F + + LG+
Sbjct: 13 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 72
Query: 368 KLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADE 427
+ LV++ D +LK+W+ ++ LK H + +P + + S DE
Sbjct: 73 AWSSDSNLLVSA--SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 130
Query: 428 TISIWN 433
++ IW+
Sbjct: 131 SVRIWD 136
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 84/199 (42%), Gaps = 13/199 (6%)
Query: 244 ISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGT 301
+S V + P LA +++ + I +W + + + + H + + W + NLL +
Sbjct: 27 VSSVKFSPNGEWLA-SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 85
Query: 302 IGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKR 360
+ +DV + T V C ++P + SGS + +V+IWD + +
Sbjct: 86 DDKTLKIWDVSSGKCLKTLKGHSNYVFC-CNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 144
Query: 361 PLG-----LIVPKLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAV-LS 414
L + R+G +V+S C ++W+ ++ L +S V S
Sbjct: 145 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLC--RIWDTASGQCLKTLIDDDNPPVSFVKFS 202
Query: 415 PDQTCVAAASADETISIWN 433
P+ + AA+ D T+ +W+
Sbjct: 203 PNGKYILAATLDNTLKLWD 221
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 4 NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY-LASGSNNTVKIW 62
+G+L+ + G +D + T I + V +K+SPNG+Y LA+ +NT+K+W
Sbjct: 161 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 220
Query: 63 DFRQ 66
D+ +
Sbjct: 221 DYSK 224
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 27 DYPTAITREG--DVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAV 83
+Y T G V +K+SPNG +LAS S + +KIW D K + + H +
Sbjct: 13 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKTISG-HKLGI 69
Query: 84 KAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK 116
+AW + LL + D+T+++W+ +GK
Sbjct: 70 SDVAWSS-DSNLLVSASD--DKTLKIWDVSSGK 99
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 98/202 (48%), Gaps = 14/202 (6%)
Query: 243 YISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWN--GNLLSCG 300
Y+ C + P++ +L V+ + E + +W + + ++ L H V A+ +N G+L+
Sbjct: 109 YVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 167
Query: 301 TIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY-LASGSNNTVKIWDFRQ---- 355
+ G +D + T I + V +K+SPNG+Y LA+ +NT+K+WD+ +
Sbjct: 168 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL 227
Query: 356 ---LDAKRPLGLIVPKLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAV 412
K I G + + S G +D + +W ++++L+ H + ++S
Sbjct: 228 KTYTGHKNEKYCIFANFSVTGGKWIVS-GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 286
Query: 413 LSPDQTCVAAASA--DETISIW 432
P + +A+A+ D+TI +W
Sbjct: 287 CHPTENIIASAALENDKTIKLW 308
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 316 DYPTAITREG--DVVCGLKWSPNGRYLASGS-NNTVKIW-----DFRQLDAKRPLGLIVP 367
+Y T G V +K+SPNG +LAS S + +KIW F + + LG+
Sbjct: 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 71
Query: 368 KLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADE 427
+ LV++ D +LK+W+ ++ LK H + +P + + S DE
Sbjct: 72 AWSSDSNLLVSA--SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 129
Query: 428 TISIWN 433
++ IW+
Sbjct: 130 SVRIWD 135
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 84/199 (42%), Gaps = 13/199 (6%)
Query: 244 ISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGT 301
+S V + P LA +++ + I +W + + + + H + + W + NLL +
Sbjct: 26 VSSVKFSPNGEWLA-SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 84
Query: 302 IGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKR 360
+ +DV + T V C ++P + SGS + +V+IWD + +
Sbjct: 85 DDKTLKIWDVSSGKCLKTLKGHSNYVFC-CNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 143
Query: 361 PLG-----LIVPKLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAV-LS 414
L + R+G +V+S C ++W+ ++ L +S V S
Sbjct: 144 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLC--RIWDTASGQCLKTLIDDDNPPVSFVKFS 201
Query: 415 PDQTCVAAASADETISIWN 433
P+ + AA+ D T+ +W+
Sbjct: 202 PNGKYILAATLDNTLKLWD 220
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 4 NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY-LASGSNNTVKIW 62
+G+L+ + G +D + T I + V +K+SPNG+Y LA+ +NT+K+W
Sbjct: 160 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 219
Query: 63 DFRQ 66
D+ +
Sbjct: 220 DYSK 223
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 27 DYPTAITREG--DVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAV 83
+Y T G V +K+SPNG +LAS S + +KIW D K + + H +
Sbjct: 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKTISG-HKLGI 68
Query: 84 KAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK 116
+AW + LL + D+T+++W+ +GK
Sbjct: 69 SDVAWSS-DSNLLVSASD--DKTLKIWDVSSGK 98
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 98/202 (48%), Gaps = 14/202 (6%)
Query: 243 YISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWN--GNLLSCG 300
Y+ C + P++ +L V+ + E + +W + + ++ L H V A+ +N G+L+
Sbjct: 131 YVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 189
Query: 301 TIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY-LASGSNNTVKIWDFRQ---- 355
+ G +D + T I + V +K+SPNG+Y LA+ +NT+K+WD+ +
Sbjct: 190 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL 249
Query: 356 ---LDAKRPLGLIVPKLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAV 412
K I G + + S G +D + +W ++++L+ H + ++S
Sbjct: 250 KTYTGHKNEKYCIFANFSVTGGKWIVS-GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 308
Query: 413 LSPDQTCVAAASA--DETISIW 432
P + +A+A+ D+TI +W
Sbjct: 309 CHPTENIIASAALENDKTIKLW 330
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 8/113 (7%)
Query: 327 VVCGLKWSPNGRYLASGS-NNTVKIW-----DFRQLDAKRPLGLIVPKLKREGRELVTSH 380
V +K+SPNG +LAS S + +KIW F + + LG+ + LV++
Sbjct: 47 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA- 105
Query: 381 GKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 433
D +LK+W+ ++ LK H + +P + + S DE++ IW+
Sbjct: 106 -SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 157
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 84/199 (42%), Gaps = 13/199 (6%)
Query: 244 ISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGT 301
+S V + P LA +++ + I +W + + + + H + + W + NLL +
Sbjct: 48 VSSVKFSPNGEWLA-SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 106
Query: 302 IGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKR 360
+ +DV + T V C ++P + SGS + +V+IWD + +
Sbjct: 107 DDKTLKIWDVSSGKCLKTLKGHSNYVFC-CNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 165
Query: 361 PLG-----LIVPKLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAV-LS 414
L + R+G +V+S C ++W+ ++ L +S V S
Sbjct: 166 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLC--RIWDTASGQCLKTLIDDDNPPVSFVKFS 223
Query: 415 PDQTCVAAASADETISIWN 433
P+ + AA+ D T+ +W+
Sbjct: 224 PNGKYILAATLDNTLKLWD 242
Score = 35.4 bits (80), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 4 NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY-LASGSNNTVKIW 62
+G+L+ + G +D + T I + V +K+SPNG+Y LA+ +NT+K+W
Sbjct: 182 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 241
Query: 63 DFRQ 66
D+ +
Sbjct: 242 DYSK 245
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 38 VVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLL 96
V +K+SPNG +LAS S + +KIW D K + + H + +AW + LL
Sbjct: 47 AVSSVKFSPNGEWLASSSADKLIKIWG--AYDGKFEKTISG-HKLGISDVAWSS-DSNLL 102
Query: 97 ATGGGICDQTVRLWNSMNGK 116
+ D+T+++W+ +GK
Sbjct: 103 VSASD--DKTLKIWDVSSGK 120
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 98/202 (48%), Gaps = 14/202 (6%)
Query: 243 YISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWN--GNLLSCG 300
Y+ C + P++ +L V+ + E + +W + + ++ L H V A+ +N G+L+
Sbjct: 115 YVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 173
Query: 301 TIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY-LASGSNNTVKIWDFRQ---- 355
+ G +D + T I + V +K+SPNG+Y LA+ +NT+K+WD+ +
Sbjct: 174 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL 233
Query: 356 ---LDAKRPLGLIVPKLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAV 412
K I G + + S G +D + +W ++++L+ H + ++S
Sbjct: 234 KTYTGHKNEKYCIFANFSVTGGKWIVS-GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 292
Query: 413 LSPDQTCVAAASA--DETISIW 432
P + +A+A+ D+TI +W
Sbjct: 293 CHPTENIIASAALENDKTIKLW 314
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 8/113 (7%)
Query: 327 VVCGLKWSPNGRYLASGS-NNTVKIW-----DFRQLDAKRPLGLIVPKLKREGRELVTSH 380
V +K+SPNG +LAS S + +KIW F + + LG+ + LV++
Sbjct: 31 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA- 89
Query: 381 GKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 433
D +LK+W+ ++ LK H + +P + + S DE++ IW+
Sbjct: 90 -SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 84/199 (42%), Gaps = 13/199 (6%)
Query: 244 ISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGT 301
+S V + P LA +++ + I +W + + + + H + + W + NLL +
Sbjct: 32 VSSVKFSPNGEWLA-SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 90
Query: 302 IGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKR 360
+ +DV + T V C ++P + SGS + +V+IWD + +
Sbjct: 91 DDKTLKIWDVSSGKCLKTLKGHSNYVFC-CNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 149
Query: 361 PLG-----LIVPKLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAV-LS 414
L + R+G +V+S C ++W+ ++ L +S V S
Sbjct: 150 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLC--RIWDTASGQCLKTLIDDDNPPVSFVKFS 207
Query: 415 PDQTCVAAASADETISIWN 433
P+ + AA+ D T+ +W+
Sbjct: 208 PNGKYILAATLDNTLKLWD 226
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 4 NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY-LASGSNNTVKIW 62
+G+L+ + G +D + T I + V +K+SPNG+Y LA+ +NT+K+W
Sbjct: 166 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
Query: 63 DFRQ 66
D+ +
Sbjct: 226 DYSK 229
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 38 VVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLL 96
V +K+SPNG +LAS S + +KIW D K + + H + +AW + LL
Sbjct: 31 AVSSVKFSPNGEWLASSSADKLIKIWG--AYDGKFEKTISG-HKLGISDVAWSS-DSNLL 86
Query: 97 ATGGGICDQTVRLWNSMNGK 116
+ D+T+++W+ +GK
Sbjct: 87 VSASD--DKTLKIWDVSSGK 104
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 98/202 (48%), Gaps = 14/202 (6%)
Query: 243 YISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWN--GNLLSCG 300
Y+ C + P++ +L V+ + E + +W + + ++ L H V A+ +N G+L+
Sbjct: 115 YVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 173
Query: 301 TIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY-LASGSNNTVKIWDFRQ---- 355
+ G +D + T I + V +K+SPNG+Y LA+ +NT+K+WD+ +
Sbjct: 174 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL 233
Query: 356 ---LDAKRPLGLIVPKLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAV 412
K I G + + S G +D + +W ++++L+ H + ++S
Sbjct: 234 KTYTGHKNEKYCIFANFSVTGGKWIVS-GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 292
Query: 413 LSPDQTCVAAASA--DETISIW 432
P + +A+A+ D+TI +W
Sbjct: 293 CHPTENIIASAALENDKTIKLW 314
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 316 DYPTAITREG--DVVCGLKWSPNGRYLASGS-NNTVKIW-----DFRQLDAKRPLGLIVP 367
+Y T G V +K+SPNG +LAS S + +KIW F + + LG+
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 77
Query: 368 KLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADE 427
+ LV++ D +LK+W+ ++ LK H + +P + + S DE
Sbjct: 78 AWSSDSNLLVSA--SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 135
Query: 428 TISIWN 433
++ IW+
Sbjct: 136 SVRIWD 141
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 84/199 (42%), Gaps = 13/199 (6%)
Query: 244 ISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGT 301
+S V + P LA +++ + I +W + + + + H + + W + NLL +
Sbjct: 32 VSSVKFSPNGEWLA-SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 90
Query: 302 IGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKR 360
+ +DV + T V C ++P + SGS + +V+IWD + +
Sbjct: 91 DDKTLKIWDVSSGKCLKTLKGHSNYVFC-CNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 149
Query: 361 PLG-----LIVPKLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAV-LS 414
L + R+G +V+S C ++W+ ++ L +S V S
Sbjct: 150 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLC--RIWDTASGQCLKTLIDDDNPPVSFVKFS 207
Query: 415 PDQTCVAAASADETISIWN 433
P+ + AA+ D T+ +W+
Sbjct: 208 PNGKYILAATLDNTLKLWD 226
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 4 NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY-LASGSNNTVKIW 62
+G+L+ + G +D + T I + V +K+SPNG+Y LA+ +NT+K+W
Sbjct: 166 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
Query: 63 DFRQ 66
D+ +
Sbjct: 226 DYSK 229
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 27 DYPTAITREG--DVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAV 83
+Y T G V +K+SPNG +LAS S + +KIW D K + + H +
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG--AYDGKFEKTISG-HKLGI 74
Query: 84 KAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK 116
+AW + LL + D+T+++W+ +GK
Sbjct: 75 SDVAWSS-DSNLLVSASD--DKTLKIWDVSSGK 104
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 98/202 (48%), Gaps = 14/202 (6%)
Query: 243 YISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWN--GNLLSCG 300
Y+ C + P++ +L V+ + E + +W + + ++ L H V A+ +N G+L+
Sbjct: 108 YVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 166
Query: 301 TIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY-LASGSNNTVKIWDFRQ---- 355
+ G +D + T I + V +K+SPNG+Y LA+ +NT+K+WD+ +
Sbjct: 167 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL 226
Query: 356 ---LDAKRPLGLIVPKLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAV 412
K I G + + S G +D + +W ++++L+ H + ++S
Sbjct: 227 KTYTGHKNEKYCIFANFSVTGGKWIVS-GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 285
Query: 413 LSPDQTCVAAASA--DETISIW 432
P + +A+A+ D+TI +W
Sbjct: 286 CHPTENIIASAALENDKTIKLW 307
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 316 DYPTAITREG--DVVCGLKWSPNGRYLASGS-NNTVKIW-----DFRQLDAKRPLGLIVP 367
+Y T G V +K+SPNG +LAS S + +KIW F + + LG+
Sbjct: 11 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 70
Query: 368 KLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADE 427
+ LV++ D +LK+W+ ++ LK H + +P + + S DE
Sbjct: 71 AWSSDSNLLVSA--SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 128
Query: 428 TISIWN 433
++ IW+
Sbjct: 129 SVRIWD 134
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 84/199 (42%), Gaps = 13/199 (6%)
Query: 244 ISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGT 301
+S V + P LA +++ + I +W + + + + H + + W + NLL +
Sbjct: 25 VSSVKFSPNGEWLA-SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 83
Query: 302 IGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKR 360
+ +DV + T V C ++P + SGS + +V+IWD + +
Sbjct: 84 DDKTLKIWDVSSGKCLKTLKGHSNYVFC-CNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 142
Query: 361 PLG-----LIVPKLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAV-LS 414
L + R+G +V+S C ++W+ ++ L +S V S
Sbjct: 143 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLC--RIWDTASGQCLKTLIDDDNPPVSFVKFS 200
Query: 415 PDQTCVAAASADETISIWN 433
P+ + AA+ D T+ +W+
Sbjct: 201 PNGKYILAATLDNTLKLWD 219
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 4 NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY-LASGSNNTVKIW 62
+G+L+ + G +D + T I + V +K+SPNG+Y LA+ +NT+K+W
Sbjct: 159 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 218
Query: 63 DFRQ 66
D+ +
Sbjct: 219 DYSK 222
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 27 DYPTAITREG--DVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAV 83
+Y T G V +K+SPNG +LAS S + +KIW D K + + H +
Sbjct: 11 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKTISG-HKLGI 67
Query: 84 KAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK 116
+AW + LL + D+T+++W+ +GK
Sbjct: 68 SDVAWSS-DSNLLVSASD--DKTLKIWDVSSGK 97
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 98/202 (48%), Gaps = 14/202 (6%)
Query: 243 YISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWN--GNLLSCG 300
Y+ C + P++ +L V+ + E + +W + + ++ L H V A+ +N G+L+
Sbjct: 126 YVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 184
Query: 301 TIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY-LASGSNNTVKIWDFRQ---- 355
+ G +D + T I + V +K+SPNG+Y LA+ +NT+K+WD+ +
Sbjct: 185 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL 244
Query: 356 ---LDAKRPLGLIVPKLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAV 412
K I G + + S G +D + +W ++++L+ H + ++S
Sbjct: 245 KTYTGHKNEKYCIFANFSVTGGKWIVS-GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 303
Query: 413 LSPDQTCVAAASA--DETISIW 432
P + +A+A+ D+TI +W
Sbjct: 304 CHPTENIIASAALENDKTIKLW 325
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 316 DYPTAITREG--DVVCGLKWSPNGRYLASGS-NNTVKIW-----DFRQLDAKRPLGLIVP 367
+Y T G V +K+SPNG +LAS S + +KIW F + + LG+
Sbjct: 29 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 88
Query: 368 KLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADE 427
+ LV++ D +LK+W+ ++ LK H + +P + + S DE
Sbjct: 89 AWSSDSNLLVSA--SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 146
Query: 428 TISIWN 433
++ IW+
Sbjct: 147 SVRIWD 152
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 84/199 (42%), Gaps = 13/199 (6%)
Query: 244 ISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGT 301
+S V + P LA +++ + I +W + + + + H + + W + NLL +
Sbjct: 43 VSSVKFSPNGEWLA-SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 101
Query: 302 IGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKR 360
+ +DV + T V C ++P + SGS + +V+IWD + +
Sbjct: 102 DDKTLKIWDVSSGKCLKTLKGHSNYVFC-CNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 160
Query: 361 PLG-----LIVPKLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAV-LS 414
L + R+G +V+S C ++W+ ++ L +S V S
Sbjct: 161 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLC--RIWDTASGQCLKTLIDDDNPPVSFVKFS 218
Query: 415 PDQTCVAAASADETISIWN 433
P+ + AA+ D T+ +W+
Sbjct: 219 PNGKYILAATLDNTLKLWD 237
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 4 NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY-LASGSNNTVKIW 62
+G+L+ + G +D + T I + V +K+SPNG+Y LA+ +NT+K+W
Sbjct: 177 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 236
Query: 63 DFRQ 66
D+ +
Sbjct: 237 DYSK 240
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 27 DYPTAITREG--DVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAV 83
+Y T G V +K+SPNG +LAS S + +KIW D K + + H +
Sbjct: 29 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG--AYDGKFEKTISG-HKLGI 85
Query: 84 KAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK 116
+AW + LL + D+T+++W+ +GK
Sbjct: 86 SDVAWSS-DSNLLVSASD--DKTLKIWDVSSGK 115
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 98/202 (48%), Gaps = 14/202 (6%)
Query: 243 YISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWN--GNLLSCG 300
Y+ C + P++ +L V+ + E + +W + + ++ L H V A+ +N G+L+
Sbjct: 115 YVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 173
Query: 301 TIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY-LASGSNNTVKIWDFRQ---- 355
+ G +D + T I + V +K+SPNG+Y LA+ +NT+K+WD+ +
Sbjct: 174 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL 233
Query: 356 ---LDAKRPLGLIVPKLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAV 412
K I G + + S G +D + +W ++++L+ H + ++S
Sbjct: 234 KTYTGHKNEKYCIFANFSVTGGKWIVS-GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 292
Query: 413 LSPDQTCVAAASA--DETISIW 432
P + +A+A+ D+TI +W
Sbjct: 293 CHPTENIIASAALENDKTIKLW 314
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 8/113 (7%)
Query: 327 VVCGLKWSPNGRYLASGS-NNTVKIW-----DFRQLDAKRPLGLIVPKLKREGRELVTSH 380
V +K+SPNG +LAS S + +KIW F + + LG+ + LV++
Sbjct: 31 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA- 89
Query: 381 GKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 433
D +LK+W+ ++ LK H + +P + + S DE++ IW+
Sbjct: 90 -SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 84/199 (42%), Gaps = 13/199 (6%)
Query: 244 ISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGT 301
+S V + P LA +++ + I +W + + + + H + + W + NLL +
Sbjct: 32 VSSVKFSPNGEWLA-SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 90
Query: 302 IGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKR 360
+ +DV + T V C ++P + SGS + +V+IWD + +
Sbjct: 91 DDKTLKIWDVSSGKCLKTLKGHSNYVFC-CNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 149
Query: 361 PLG-----LIVPKLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAV-LS 414
L + R+G +V+S C ++W+ ++ L +S V S
Sbjct: 150 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLC--RIWDTASGQCLKTLIDDDNPPVSFVKFS 207
Query: 415 PDQTCVAAASADETISIWN 433
P+ + AA+ D T+ +W+
Sbjct: 208 PNGKYILAATLDNTLKLWD 226
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 4 NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY-LASGSNNTVKIW 62
+G+L+ + G +D + T I + V +K+SPNG+Y LA+ +NT+K+W
Sbjct: 166 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
Query: 63 DFRQ 66
D+ +
Sbjct: 226 DYSK 229
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 38 VVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLL 96
V +K+SPNG +LAS S + +KIW D K + + H + +AW + LL
Sbjct: 31 AVSSVKFSPNGEWLASSSADKLIKIWG--AYDGKFEKTISG-HKLGISDVAWSS-DSNLL 86
Query: 97 ATGGGICDQTVRLWNSMNGK 116
+ D+T+++W+ +GK
Sbjct: 87 VSASD--DKTLKIWDVSSGK 104
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 98/202 (48%), Gaps = 14/202 (6%)
Query: 243 YISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWN--GNLLSCG 300
Y+ C + P++ +L V+ + E + +W + + ++ L H V A+ +N G+L+
Sbjct: 105 YVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 163
Query: 301 TIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY-LASGSNNTVKIWDFRQ---- 355
+ G +D + T I + V +K+SPNG+Y LA+ +NT+K+WD+ +
Sbjct: 164 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL 223
Query: 356 ---LDAKRPLGLIVPKLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAV 412
K I G + + S G +D + +W ++++L+ H + ++S
Sbjct: 224 KTYTGHKNEKYCIFANFSVTGGKWIVS-GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 282
Query: 413 LSPDQTCVAAASA--DETISIW 432
P + +A+A+ D+TI +W
Sbjct: 283 CHPTENIIASAALENDKTIKLW 304
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 316 DYPTAITREG--DVVCGLKWSPNGRYLASGS-NNTVKIW-----DFRQLDAKRPLGLIVP 367
+Y T G V +K+SPNG +LAS S + +KIW F + + LG+
Sbjct: 8 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 67
Query: 368 KLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADE 427
+ LV++ D +LK+W+ ++ LK H + +P + + S DE
Sbjct: 68 AWSSDSNLLVSA--SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 125
Query: 428 TISIWN 433
++ IW+
Sbjct: 126 SVRIWD 131
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 84/199 (42%), Gaps = 13/199 (6%)
Query: 244 ISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGT 301
+S V + P LA +++ + I +W + + + + H + + W + NLL +
Sbjct: 22 VSSVKFSPNGEWLA-SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 80
Query: 302 IGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKR 360
+ +DV + T V C ++P + SGS + +V+IWD + +
Sbjct: 81 DDKTLKIWDVSSGKCLKTLKGHSNYVFC-CNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 139
Query: 361 PLG-----LIVPKLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAV-LS 414
L + R+G +V+S C ++W+ ++ L +S V S
Sbjct: 140 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLC--RIWDTASGQCLKTLIDDDNPPVSFVKFS 197
Query: 415 PDQTCVAAASADETISIWN 433
P+ + AA+ D T+ +W+
Sbjct: 198 PNGKYILAATLDNTLKLWD 216
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 4 NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY-LASGSNNTVKIW 62
+G+L+ + G +D + T I + V +K+SPNG+Y LA+ +NT+K+W
Sbjct: 156 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 215
Query: 63 DFRQ 66
D+ +
Sbjct: 216 DYSK 219
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 27 DYPTAITREG--DVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAV 83
+Y T G V +K+SPNG +LAS S + +KIW D K + + H +
Sbjct: 8 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKTISG-HKLGI 64
Query: 84 KAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK 116
+AW + LL + D+T+++W+ +GK
Sbjct: 65 SDVAWSS-DSNLLVSASD--DKTLKIWDVSSGK 94
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 98/202 (48%), Gaps = 14/202 (6%)
Query: 243 YISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWN--GNLLSCG 300
Y+ C + P++ +L V+ + E + +W + + ++ L H V A+ +N G+L+
Sbjct: 133 YVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 191
Query: 301 TIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY-LASGSNNTVKIWDFRQ---- 355
+ G +D + T I + V +K+SPNG+Y LA+ +NT+K+WD+ +
Sbjct: 192 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL 251
Query: 356 ---LDAKRPLGLIVPKLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAV 412
K I G + + S G +D + +W ++++L+ H + ++S
Sbjct: 252 KTYTGHKNEKYCIFANFSVTGGKWIVS-GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 310
Query: 413 LSPDQTCVAAASA--DETISIW 432
P + +A+A+ D+TI +W
Sbjct: 311 CHPTENIIASAALENDKTIKLW 332
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 8/113 (7%)
Query: 327 VVCGLKWSPNGRYLASGS-NNTVKIW-----DFRQLDAKRPLGLIVPKLKREGRELVTSH 380
V +K+SPNG +LAS S + +KIW F + + LG+ + LV++
Sbjct: 49 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA- 107
Query: 381 GKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 433
D +LK+W+ ++ LK H + +P + + S DE++ IW+
Sbjct: 108 -SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 159
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 84/199 (42%), Gaps = 13/199 (6%)
Query: 244 ISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGT 301
+S V + P LA +++ + I +W + + + + H + + W + NLL +
Sbjct: 50 VSSVKFSPNGEWLA-SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 108
Query: 302 IGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKR 360
+ +DV + T V C ++P + SGS + +V+IWD + +
Sbjct: 109 DDKTLKIWDVSSGKCLKTLKGHSNYVFC-CNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 167
Query: 361 PLG-----LIVPKLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAV-LS 414
L + R+G +V+S C ++W+ ++ L +S V S
Sbjct: 168 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLC--RIWDTASGQCLKTLIDDDNPPVSFVKFS 225
Query: 415 PDQTCVAAASADETISIWN 433
P+ + AA+ D T+ +W+
Sbjct: 226 PNGKYILAATLDNTLKLWD 244
Score = 35.0 bits (79), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 4 NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY-LASGSNNTVKIW 62
+G+L+ + G +D + T I + V +K+SPNG+Y LA+ +NT+K+W
Sbjct: 184 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 243
Query: 63 DFRQ 66
D+ +
Sbjct: 244 DYSK 247
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 38 VVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLL 96
V +K+SPNG +LAS S + +KIW D K + + H + +AW + LL
Sbjct: 49 AVSSVKFSPNGEWLASSSADKLIKIWG--AYDGKFEKTISG-HKLGISDVAWSS-DSNLL 104
Query: 97 ATGGGICDQTVRLWNSMNGK 116
+ D+T+++W+ +GK
Sbjct: 105 VSASD--DKTLKIWDVSSGK 122
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 98/202 (48%), Gaps = 14/202 (6%)
Query: 243 YISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWN--GNLLSCG 300
Y+ C + P++ +L V+ + E + +W + + ++ L H V A+ +N G+L+
Sbjct: 112 YVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 170
Query: 301 TIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY-LASGSNNTVKIWDFRQ---- 355
+ G +D + T I + V +K+SPNG+Y LA+ +NT+K+WD+ +
Sbjct: 171 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL 230
Query: 356 ---LDAKRPLGLIVPKLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAV 412
K I G + + S G +D + +W ++++L+ H + ++S
Sbjct: 231 KTYTGHKNEKYCIFANFSVTGGKWIVS-GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 289
Query: 413 LSPDQTCVAAASA--DETISIW 432
P + +A+A+ D+TI +W
Sbjct: 290 CHPTENIIASAALENDKTIKLW 311
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 316 DYPTAITREG--DVVCGLKWSPNGRYLASGS-NNTVKIW-----DFRQLDAKRPLGLIVP 367
+Y T G V +K+SPNG +LA+ S + +KIW F + + LG+
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 368 KLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADE 427
+ LV++ D +LK+W+ ++ LK H + +P + + S DE
Sbjct: 75 AWSSDSNLLVSA--SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 428 TISIWN 433
++ IW+
Sbjct: 133 SVRIWD 138
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 83/199 (41%), Gaps = 13/199 (6%)
Query: 244 ISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGT 301
+S V + P LA + + + I +W + + + + H + + W + NLL +
Sbjct: 29 VSSVKFSPNGEWLAAS-SADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 87
Query: 302 IGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKR 360
+ +DV + T V C ++P + SGS + +V+IWD + +
Sbjct: 88 DDKTLKIWDVSSGKCLKTLKGHSNYVFC-CNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 146
Query: 361 PLG-----LIVPKLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAV-LS 414
L + R+G +V+S C ++W+ ++ L +S V S
Sbjct: 147 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLC--RIWDTASGQCLKTLIDDDNPPVSFVKFS 204
Query: 415 PDQTCVAAASADETISIWN 433
P+ + AA+ D T+ +W+
Sbjct: 205 PNGKYILAATLDNTLKLWD 223
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 4 NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY-LASGSNNTVKIW 62
+G+L+ + G +D + T I + V +K+SPNG+Y LA+ +NT+K+W
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Query: 63 DFRQ 66
D+ +
Sbjct: 223 DYSK 226
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 27 DYPTAITREG--DVVCGLKWSPNGRYL-ASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAV 83
+Y T G V +K+SPNG +L AS ++ +KIW D K + + H +
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWG--AYDGKFEKTISG-HKLGI 71
Query: 84 KAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK 116
+AW + LL + D+T+++W+ +GK
Sbjct: 72 SDVAWSS-DSNLLVSASD--DKTLKIWDVSSGK 101
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 393 PRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCF 435
P L L H + + S SP+ +AA+SAD+ I IW +
Sbjct: 14 PNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAY 56
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 97/202 (48%), Gaps = 14/202 (6%)
Query: 243 YISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWN--GNLLSCG 300
Y+ C + P++ +L V+ + E + +W + ++ L H V A+ +N G+L+
Sbjct: 112 YVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSS 170
Query: 301 TIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY-LASGSNNTVKIWDFRQ---- 355
+ G +D + T I + V +K+SPNG+Y LA+ +NT+K+WD+ +
Sbjct: 171 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL 230
Query: 356 ---LDAKRPLGLIVPKLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAV 412
K I G + + S G +D + +W ++++L+ H + ++S
Sbjct: 231 KTYTGHKNEKYCIFANFSVTGGKWIVS-GSEDNMVYIWNLQTKEIVQKLQGHTDVVISTA 289
Query: 413 LSPDQTCVAAASA--DETISIW 432
P + +A+A+ D+TI +W
Sbjct: 290 CHPTENIIASAALENDKTIKLW 311
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 316 DYPTAITREG--DVVCGLKWSPNGRYLASGS-NNTVKIW-----DFRQLDAKRPLGLIVP 367
+Y T G V +K+SPNG +LAS S + +KIW F + + LG+
Sbjct: 15 NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 368 KLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADE 427
+ LV++ D +LK+W+ ++ LK H + +P + + S DE
Sbjct: 75 AWSSDSNLLVSA--SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 428 TISIWN 433
++ IW+
Sbjct: 133 SVRIWD 138
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 86/201 (42%), Gaps = 17/201 (8%)
Query: 244 ISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGT 301
+S V + P LA +++ + I +W + + + + H + + W + NLL +
Sbjct: 29 VSSVKFSPNGEWLA-SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 87
Query: 302 IGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWD------FR 354
+ +DV + T V C ++P + SGS + +V+IWD +
Sbjct: 88 DDKTLKIWDVSSGKCLKTLKGHSNYVFC-CNFNPQSNLIVSGSFDESVRIWDVKTGMCLK 146
Query: 355 QLDA-KRPLGLIVPKLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAV- 412
L A P+ + R+G +V+S C ++W+ ++ L +S V
Sbjct: 147 TLPAHSDPVSAV--HFNRDGSLIVSSSYDGLC--RIWDTASGQCLKTLIDDDNPPVSFVK 202
Query: 413 LSPDQTCVAAASADETISIWN 433
SP+ + AA+ D T+ +W+
Sbjct: 203 FSPNGKYILAATLDNTLKLWD 223
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 4 NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY-LASGSNNTVKIW 62
+G+L+ + G +D + T I + V +K+SPNG+Y LA+ +NT+K+W
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Query: 63 DFRQ 66
D+ +
Sbjct: 223 DYSK 226
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 27 DYPTAITREG--DVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAV 83
+Y T G V +K+SPNG +LAS S + +KIW D K + + H +
Sbjct: 15 NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKTISG-HKLGI 71
Query: 84 KAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK 116
+AW + LL + D+T+++W+ +GK
Sbjct: 72 SDVAWSS-DSNLLVSASD--DKTLKIWDVSSGK 101
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 393 PRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCF 435
P L+ L H + + S SP+ +A++SAD+ I IW +
Sbjct: 14 PNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 56
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 98/202 (48%), Gaps = 14/202 (6%)
Query: 243 YISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWN--GNLLSCG 300
Y+ C + P++ +L V+ + E + +W + + ++ L H V A+ +N G+L+
Sbjct: 112 YVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 170
Query: 301 TIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY-LASGSNNTVKIWDFRQ---- 355
+ G +D + T I + V +K+SPNG+Y LA+ +NT+K+WD+ +
Sbjct: 171 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL 230
Query: 356 ---LDAKRPLGLIVPKLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAV 412
K I G + + S G +D + +W ++++L+ H + ++S
Sbjct: 231 KTYTGHKNEKYCIFANFSVTGGKWIVS-GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 289
Query: 413 LSPDQTCVAAASA--DETISIW 432
P + +A+A+ D+TI ++
Sbjct: 290 CHPTENIIASAALENDKTIKLY 311
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 316 DYPTAITREG--DVVCGLKWSPNGRYLASGS-NNTVKIW-----DFRQLDAKRPLGLIVP 367
+Y T G V +K+SPNG +LAS S + +KIW F + + LG+
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 368 KLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADE 427
+ LV++ D +LK+W+ ++ LK H + +P + + S DE
Sbjct: 75 AWSSDSNLLVSA--SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 428 TISIWN 433
++ IW+
Sbjct: 133 SVRIWD 138
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 84/199 (42%), Gaps = 13/199 (6%)
Query: 244 ISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGT 301
+S V + P LA +++ + I +W + + + + H + + W + NLL +
Sbjct: 29 VSSVKFSPNGEWLA-SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 87
Query: 302 IGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKR 360
+ +DV + T V C ++P + SGS + +V+IWD + +
Sbjct: 88 DDKTLKIWDVSSGKCLKTLKGHSNYVFC-CNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 146
Query: 361 PLG-----LIVPKLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAV-LS 414
L + R+G +V+S C ++W+ ++ L +S V S
Sbjct: 147 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLC--RIWDTASGQCLKTLIDDDNPPVSFVKFS 204
Query: 415 PDQTCVAAASADETISIWN 433
P+ + AA+ D T+ +W+
Sbjct: 205 PNGKYILAATLDNTLKLWD 223
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 4 NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY-LASGSNNTVKIW 62
+G+L+ + G +D + T I + V +K+SPNG+Y LA+ +NT+K+W
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Query: 63 DFRQ 66
D+ +
Sbjct: 223 DYSK 226
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 27 DYPTAITREG--DVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAV 83
+Y T G V +K+SPNG +LAS S + +KIW D K + + H +
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG--AYDGKFEKTISG-HKLGI 71
Query: 84 KAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK 116
+AW + LL + D+T+++W+ +GK
Sbjct: 72 SDVAWSS-DSNLLVSASD--DKTLKIWDVSSGK 101
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 96/202 (47%), Gaps = 14/202 (6%)
Query: 243 YISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWN--GNLLSCG 300
Y+ C + P++ +L V+ + E + +W + ++ L H V A+ +N G+L+
Sbjct: 112 YVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSS 170
Query: 301 TIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY-LASGSNNTVKIWDFRQ---- 355
+ G +D + T I + V +K+SPNG+Y LA+ +N +K+WD+ +
Sbjct: 171 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCL 230
Query: 356 ---LDAKRPLGLIVPKLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAV 412
K I G + + S G +D + +W ++++L+ H + ++S
Sbjct: 231 KTYTGHKNEKYCIFANFSVTGGKWIVS-GSEDNMVYIWNLQTKEIVQKLQGHTDVVISTA 289
Query: 413 LSPDQTCVAAASA--DETISIW 432
P + +A+A+ D+TI +W
Sbjct: 290 CHPTENIIASAALENDKTIKLW 311
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 316 DYPTAITREG--DVVCGLKWSPNGRYLASGS-NNTVKIW-----DFRQLDAKRPLGLIVP 367
+Y T G V +K+SPNG +LAS S + +KIW F + + LG+
Sbjct: 15 NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 368 KLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADE 427
+ LV++ D +LK+W+ ++ LK H + +P + + S DE
Sbjct: 75 AWSSDSNLLVSA--SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 428 TISIWN 433
++ IW+
Sbjct: 133 SVRIWD 138
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 27 DYPTAITREG--DVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAV 83
+Y T G V +K+SPNG +LAS S + +KIW D K + + H +
Sbjct: 15 NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKTISG-HKLGI 71
Query: 84 KAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK 116
+AW + LL + D+T+++W+ +GK
Sbjct: 72 SDVAWSS-DSNLLVSASD--DKTLKIWDVSSGK 101
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 4 NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY-LASGSNNTVKIW 62
+G+L+ + G +D + T I + V +K+SPNG+Y LA+ +N +K+W
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLW 222
Query: 63 DFRQ 66
D+ +
Sbjct: 223 DYSK 226
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 393 PRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCF 435
P L+ L H + + S SP+ +A++SAD+ I IW +
Sbjct: 14 PNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 56
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 98/202 (48%), Gaps = 14/202 (6%)
Query: 243 YISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWN--GNLLSCG 300
Y+ C + P++ +L V+ + E + +W + + ++ L H V A+ +N G+L+
Sbjct: 112 YVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 170
Query: 301 TIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY-LASGSNNTVKIWDFRQ---- 355
+ G +D + T I + V +K+SPNG+Y LA+ +NT+K+WD+ +
Sbjct: 171 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL 230
Query: 356 ---LDAKRPLGLIVPKLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAV 412
K I G + + S G +D + +W ++++L+ H + ++S
Sbjct: 231 KTYTGHKNEKYCIFANFSVTGGKWIVS-GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 289
Query: 413 LSPDQTCVAAASA--DETISIW 432
P + +A+A+ D+TI ++
Sbjct: 290 CHPTENIIASAALENDKTIKLF 311
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 316 DYPTAITREG--DVVCGLKWSPNGRYLASGS-NNTVKIW-----DFRQLDAKRPLGLIVP 367
+Y T G V +K+SPNG +LAS S + +KIW F + + LG+
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 368 KLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADE 427
+ LV++ D +LK+W+ ++ LK H + +P + + S DE
Sbjct: 75 AWSSDSNLLVSA--SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 428 TISIWN 433
++ IW+
Sbjct: 133 SVRIWD 138
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 84/199 (42%), Gaps = 13/199 (6%)
Query: 244 ISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGT 301
+S V + P LA +++ + I +W + + + + H + + W + NLL +
Sbjct: 29 VSSVKFSPNGEWLA-SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 87
Query: 302 IGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKR 360
+ +DV + T V C ++P + SGS + +V+IWD + +
Sbjct: 88 DDKTLKIWDVSSGKCLKTLKGHSNYVFC-CNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 146
Query: 361 PLG-----LIVPKLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAV-LS 414
L + R+G +V+S C ++W+ ++ L +S V S
Sbjct: 147 TLPAHSDPVSAVHFNRDGSLIVSSSYDGLC--RIWDTASGQCLKTLIDDDNPPVSFVKFS 204
Query: 415 PDQTCVAAASADETISIWN 433
P+ + AA+ D T+ +W+
Sbjct: 205 PNGKYILAATLDNTLKLWD 223
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 4 NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY-LASGSNNTVKIW 62
+G+L+ + G +D + T I + V +K+SPNG+Y LA+ +NT+K+W
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Query: 63 DFRQ 66
D+ +
Sbjct: 223 DYSK 226
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 27 DYPTAITREG--DVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAV 83
+Y T G V +K+SPNG +LAS S + +KIW D K + + H +
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG--AYDGKFEKTISG-HKLGI 71
Query: 84 KAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK 116
+AW + LL + D+T+++W+ +GK
Sbjct: 72 SDVAWSS-DSNLLVSASD--DKTLKIWDVSSGK 101
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 90/431 (20%), Positives = 184/431 (42%), Gaps = 58/431 (13%)
Query: 32 ITREGDVVCGLKWSPNGRYLASGSNN-TVKIWDFRQLDAKRPQVNNQC--HLSAVKAIAW 88
+T V G+ +SP+G+ +AS S++ TVK+W+ + Q+ H S+V+ +A+
Sbjct: 176 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN------RNGQLLQTLTGHSSSVRGVAF 229
Query: 89 CPWEPTLLATGGGICDQTVRLWN--------------SMNGKE-KCHVKTDSQQANDETI 133
P T+ + D+TV+LWN S+NG + +T + ++D+T+
Sbjct: 230 SPDGQTIASAS---DDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTV 286
Query: 134 SYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAP 193
+ + + H + + +T++ +T+ R + +
Sbjct: 287 KLWNRNGQLLQTLTGHSSSV-WGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSS 345
Query: 194 SIINDFYTSGLDWGY-----HDTLAVALDT-SVYTWNTKTNKTQLLVEYPTYDNAYISCV 247
S+ WG T+A A D +V WN + L++ T ++ + V
Sbjct: 346 SV----------WGVAFSPDGQTIASASDDKTVKLWN----RNGQLLQTLTGHSSSVRGV 391
Query: 248 AWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNIL 307
A+ P +A + + + + LW+ + L+Q L H V + ++ + + + +
Sbjct: 392 AFSPDGQTIA-SASDDKTVKLWNRNGQ-LLQTLTGHSSSVWGVAFSPDDQTIASASDDKT 449
Query: 308 HYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNN-TVKIWD----FRQLDAKRPL 362
+ +T V G+ +SP+G+ +AS S++ TVK+W+ Q
Sbjct: 450 VKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS 509
Query: 363 GLIVPKLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAA 422
+ +G+ + ++ D ++K+W L++ L H + SPD +A+
Sbjct: 510 SVRGVAFSPDGQTIASA--SDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIAS 566
Query: 423 ASADETISIWN 433
AS+D+T+ +WN
Sbjct: 567 ASSDKTVKLWN 577
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 103/224 (45%), Gaps = 18/224 (8%)
Query: 217 DTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL 276
D +V WN + L++ T ++ + VA+ P +A + + + + LW+ + L
Sbjct: 119 DKTVKLWN----RNGQLLQTLTGHSSSVWGVAFSPDGQTIA-SASDDKTVKLWNRNGQ-L 172
Query: 277 IQKLRTHMHQV--IAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWS 334
+Q L H V +A +G ++ + + ++ + +T V G+ +S
Sbjct: 173 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN--RNGQLLQTLTGHSSSVRGVAFS 230
Query: 335 PNGRYLASGSNN-TVKIWD----FRQLDAKRPLGLIVPKLKREGRELVTSHGKQDCSLKM 389
P+G+ +AS S++ TVK+W+ Q + + +G+ + ++ D ++K+
Sbjct: 231 PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASA--SDDKTVKL 288
Query: 390 WEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 433
W L++ L H + SPD +A+AS D+T+ +WN
Sbjct: 289 WNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 331
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 102/224 (45%), Gaps = 18/224 (8%)
Query: 217 DTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL 276
D +V WN + L++ T ++ + VA+ P +A + + + + LW+ + L
Sbjct: 37 DKTVKLWN----RNGQLLQTLTGHSSSVWGVAFSPDGQTIA-SASDDKTVKLWNRNGQ-L 90
Query: 277 IQKLRTHMHQV--IAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWS 334
+Q L H V +A +G ++ + + ++ + +T V G+ +S
Sbjct: 91 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN--RNGQLLQTLTGHSSSVWGVAFS 148
Query: 335 PNGRYLASGSNN-TVKIWD----FRQLDAKRPLGLIVPKLKREGRELVTSHGKQDCSLKM 389
P+G+ +AS S++ TVK+W+ Q + +G+ + ++ D ++K+
Sbjct: 149 PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASA--SDDKTVKL 206
Query: 390 WEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 433
W L++ L H + SPD +A+AS D+T+ +WN
Sbjct: 207 WNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 249
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 101/224 (45%), Gaps = 18/224 (8%)
Query: 217 DTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL 276
D +V WN + L++ T ++ + VA+ P +A + + + + LW+ + L
Sbjct: 160 DKTVKLWN----RNGQLLQTLTGHSSSVWGVAFSPDGQTIA-SASDDKTVKLWNRNGQ-L 213
Query: 277 IQKLRTHMHQV--IAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWS 334
+Q L H V +A +G ++ + + ++ + +T V G+ +
Sbjct: 214 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN--RNGQLLQTLTGHSSSVNGVAFR 271
Query: 335 PNGRYLASGSNN-TVKIWD----FRQLDAKRPLGLIVPKLKREGRELVTSHGKQDCSLKM 389
P+G+ +AS S++ TVK+W+ Q + +G+ + ++ D ++K+
Sbjct: 272 PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASA--SDDKTVKL 329
Query: 390 WEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 433
W HL + L H + SPD +A+AS D+T+ +WN
Sbjct: 330 WNRNGQHL-QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 372
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 8/111 (7%)
Query: 328 VCGLKWSPNGRYLASGSNN-TVKIWD----FRQLDAKRPLGLIVPKLKREGRELVTSHGK 382
V G+ +SP+G+ +AS S++ TVK+W+ Q + +G+ + ++
Sbjct: 19 VRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASA--S 76
Query: 383 QDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 433
D ++K+W L++ L H + SPD +A+AS D+T+ +WN
Sbjct: 77 DDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 126
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 399 EELKIHQERILSAVLSPDQTCVAAASADETISIWN 433
L+ H + SPD +A+AS D+T+ +WN
Sbjct: 10 NRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN 44
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 77/177 (43%), Gaps = 15/177 (8%)
Query: 268 LWHEQEERLIQKLRTHMHQVIAM----CWNGNLLSCGTIGGNILHYDVRTHSDYPTAITR 323
LW + +L+Q H V+ + GN G + +D+R+ T
Sbjct: 180 LWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETH 239
Query: 324 EGDVVCGLKWSPNGRYLASGSNN-TVKIWDFRQ-----LDAKRPL--GLIVPKLKREGRE 375
E DV +++ P+G ASGS++ T +++D R + +K + G GR
Sbjct: 240 ESDVN-SVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRL 298
Query: 376 LVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIW 432
L G D ++ +W+ + + L H+ R+ + +SPD T + S D T+ +W
Sbjct: 299 LFA--GYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 11/134 (8%)
Query: 328 VCGLKWSPNGRYLASGSNN-TVKIWDFRQLDAKRPLGL---IVPKLKREGRELVTSHGKQ 383
+ L + P+G L SGS + TV+IWD R L + + G + G
Sbjct: 168 IYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSL 227
Query: 384 DCSLKMWEYPRLHLIEELKI-------HQERILSAVLSPDQTCVAAASADETISIWNCFP 436
D ++++W+ L+E L H++ + S V + D V + S D ++ +WN
Sbjct: 228 DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 287
Query: 437 RDKKRKARQVGSGS 450
+ K ++ SG+
Sbjct: 288 ANNKSDSKTPNSGT 301
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 29/132 (21%)
Query: 327 VVCGLKWSPNGRYLASGSNNTVKIWDFRQLDA-------------KRPLGLIVPK----- 368
VVC +K+S +G YLA+G N T ++ +R D K P L
Sbjct: 66 VVCCVKFSNDGEYLATGCNKTTQV--YRVSDGSLVARLSDDSAANKDPENLNTSSSPSSD 123
Query: 369 -------LKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVA 421
+G+ L T G +D +++W+ ++ L+ H++ I S P +
Sbjct: 124 LYIRSVCFSPDGKFLAT--GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLV 181
Query: 422 AASADETISIWN 433
+ S D T+ IW+
Sbjct: 182 SGSGDRTVRIWD 193
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 17/83 (20%)
Query: 39 VCGLKWSPNGRYLASGSNN-TVKIWDFRQLDAKRPQVNNQCHLS-----AVKAIAWCPWE 92
+ L + P+G L SGS + TV+IWD R QC L+ V +A P +
Sbjct: 168 IYSLDYFPSGDKLVSGSGDRTVRIWDLR---------TGQCSLTLSIEDGVTTVAVSPGD 218
Query: 93 PTLLATGGGICDQTVRLWNSMNG 115
+A G D+ VR+W+S G
Sbjct: 219 GKYIAAGS--LDRAVRVWDSETG 239
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 18/94 (19%)
Query: 38 VVCGLKWSPNGRYLASGSNNTVKIW------------DFRQLDAKRPQVNNQCHLSA--- 82
VVC +K+S +G YLA+G N T +++ D + +N S+
Sbjct: 66 VVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLY 125
Query: 83 VKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK 116
++++ + P + LATG D+ +R+W+ N K
Sbjct: 126 IRSVCFSP-DGKFLATGAE--DRLIRIWDIENRK 156
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 67/136 (49%), Gaps = 8/136 (5%)
Query: 316 DYPTAITREGDVVCGLKWSPNGRYLASGSNN-TVKIWDFRQLDAKRPL-----GLIVPKL 369
D+ + D V + + +G+ LAS S + T+K+WDF+ + R + + +
Sbjct: 141 DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSI 200
Query: 370 KREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETI 429
G +V++ +D ++KMWE + ++ H+E + + D T +A+ S D+T+
Sbjct: 201 MPNGDHIVSA--SRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV 258
Query: 430 SIWNCFPRDKKRKARQ 445
+W ++ K + R+
Sbjct: 259 RVWVVATKECKAELRE 274
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 46/99 (46%), Gaps = 7/99 (7%)
Query: 340 LASGSNNTVKIWDFRQLDAKRPL-----GLIVPKLKREGRELVTSHGKQDCSLKMWEYPR 394
+++ + T+K+WD+ D +R L + G+ L + D ++K+W++
Sbjct: 124 VSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSA--DMTIKLWDFQG 181
Query: 395 LHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 433
I + H + S + P+ + +AS D+TI +W
Sbjct: 182 FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 220
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 6/103 (5%)
Query: 337 GRYLASGS-NNTVKIWDFRQLDAKRPL----GLIVPKLKREGRELVTSHGKQDCSLKMWE 391
G +L SGS + T+K+WD L + L G + + S D +L++W+
Sbjct: 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA-DDKTLRVWD 366
Query: 392 YPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNC 434
Y ++ L H+ + S V S D+T+ +W C
Sbjct: 367 YKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 15/94 (15%)
Query: 27 DYPTAITREGDVVCGLKWSPNGRYLASGSNN-TVKIWDFRQLDAKRPQVNNQCHLSAVKA 85
D+ + D V + + +G+ LAS S + T+K+WDF+ + R + ++S+V
Sbjct: 141 DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSV-- 198
Query: 86 IAWCPWEPTLLATGGGIC----DQTVRLWNSMNG 115
+++ G I D+T+++W G
Sbjct: 199 --------SIMPNGDHIVSASRDKTIKMWEVQTG 224
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 77/182 (42%), Gaps = 14/182 (7%)
Query: 263 TEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTA 320
T ID + R + LR H+ ++ AM W + LL + G ++ +D T ++ A
Sbjct: 34 TNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYT-TNKVHA 92
Query: 321 ITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFR----QLDAKRPL----GLIVPKLKR 371
I V ++P+G Y+A G +N I++ + + R L G +
Sbjct: 93 IPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL 152
Query: 372 EGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISI 431
+ ++VTS G C+L W+ H ++S L+PD + + D + +
Sbjct: 153 DDNQIVTSSGDTTCAL--WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL 210
Query: 432 WN 433
W+
Sbjct: 211 WD 212
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 60/146 (41%), Gaps = 11/146 (7%)
Query: 254 TDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDV 311
T L V+ C LW +E Q H + A+C+ NGN + G+ +D+
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255
Query: 312 RTHSDYPTAITREGDVVCGL---KWSPNGRYLASGSNN-TVKIWDFRQLDAKRPLGL--- 364
R +D +++CG+ +S +GR L +G ++ +WD + D L
Sbjct: 256 R--ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN 313
Query: 365 IVPKLKREGRELVTSHGKQDCSLKMW 390
V L + + G D LK+W
Sbjct: 314 RVSCLGVTDDGMAVATGSWDSFLKIW 339
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 77/182 (42%), Gaps = 14/182 (7%)
Query: 263 TEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTA 320
T ID + R + LR H+ ++ AM W + LL + G ++ +D T ++ A
Sbjct: 34 TNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYT-TNKVHA 92
Query: 321 ITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFR----QLDAKRPL----GLIVPKLKR 371
I V ++P+G Y+A G +N I++ + + R L G +
Sbjct: 93 IPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL 152
Query: 372 EGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISI 431
+ ++VTS G C+L W+ H ++S L+PD + + D + +
Sbjct: 153 DDNQIVTSSGDTTCAL--WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL 210
Query: 432 WN 433
W+
Sbjct: 211 WD 212
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 60/146 (41%), Gaps = 11/146 (7%)
Query: 254 TDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDV 311
T L V+ C LW +E Q H + A+C+ NGN + G+ +D+
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255
Query: 312 RTHSDYPTAITREGDVVCGL---KWSPNGRYLASGSNN-TVKIWDFRQLDAKRPLGL--- 364
R +D +++CG+ +S +GR L +G ++ +WD + D L
Sbjct: 256 R--ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN 313
Query: 365 IVPKLKREGRELVTSHGKQDCSLKMW 390
V L + + G D LK+W
Sbjct: 314 RVSCLGVTDDGMAVATGSWDSFLKIW 339
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 77/182 (42%), Gaps = 14/182 (7%)
Query: 263 TEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTA 320
T ID + R + LR H+ ++ AM W + LL + G ++ +D T ++ A
Sbjct: 45 TNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYT-TNKVHA 103
Query: 321 ITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFR----QLDAKRPL----GLIVPKLKR 371
I V ++P+G Y+A G +N I++ + + R L G +
Sbjct: 104 IPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL 163
Query: 372 EGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISI 431
+ ++VTS G C+L W+ H ++S L+PD + + D + +
Sbjct: 164 DDNQIVTSSGDTTCAL--WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL 221
Query: 432 WN 433
W+
Sbjct: 222 WD 223
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 60/146 (41%), Gaps = 11/146 (7%)
Query: 254 TDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDV 311
T L V+ C LW +E Q H + A+C+ NGN + G+ +D+
Sbjct: 207 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 266
Query: 312 RTHSDYPTAITREGDVVCGL---KWSPNGRYLASGSNN-TVKIWDFRQLDAKRPLGL--- 364
R +D +++CG+ +S +GR L +G ++ +WD + D L
Sbjct: 267 R--ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN 324
Query: 365 IVPKLKREGRELVTSHGKQDCSLKMW 390
V L + + G D LK+W
Sbjct: 325 RVSCLGVTDDGMAVATGSWDSFLKIW 350
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 77/182 (42%), Gaps = 14/182 (7%)
Query: 263 TEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTA 320
T ID + R + LR H+ ++ AM W + LL + G ++ +D T ++ A
Sbjct: 34 TNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYT-TNKVHA 92
Query: 321 ITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFR----QLDAKRPL----GLIVPKLKR 371
I V ++P+G Y+A G +N I++ + + R L G +
Sbjct: 93 IPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL 152
Query: 372 EGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISI 431
+ ++VTS G C+L W+ H ++S L+PD + + D + +
Sbjct: 153 DDNQIVTSSGDTTCAL--WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL 210
Query: 432 WN 433
W+
Sbjct: 211 WD 212
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 60/146 (41%), Gaps = 11/146 (7%)
Query: 254 TDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDV 311
T L V+ C LW +E Q H + A+C+ NGN + G+ +D+
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255
Query: 312 RTHSDYPTAITREGDVVCGL---KWSPNGRYLASGSNN-TVKIWDFRQLDAKRPLGL--- 364
R +D +++CG+ +S +GR L +G ++ +WD + D L
Sbjct: 256 R--ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN 313
Query: 365 IVPKLKREGRELVTSHGKQDCSLKMW 390
V L + + G D LK+W
Sbjct: 314 RVSCLGVTDDGMAVATGSWDSFLKIW 339
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 77/182 (42%), Gaps = 14/182 (7%)
Query: 263 TEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTA 320
T ID + R + LR H+ ++ AM W + LL + G ++ +D T ++ A
Sbjct: 34 TNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYT-TNKVHA 92
Query: 321 ITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFR----QLDAKRPL----GLIVPKLKR 371
I V ++P+G Y+A G +N I++ + + R L G +
Sbjct: 93 IPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL 152
Query: 372 EGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISI 431
+ ++VTS G C+L W+ H ++S L+PD + + D + +
Sbjct: 153 DDNQIVTSSGDTTCAL--WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL 210
Query: 432 WN 433
W+
Sbjct: 211 WD 212
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 60/146 (41%), Gaps = 11/146 (7%)
Query: 254 TDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDV 311
T L V+ C LW +E Q H + A+C+ NGN + G+ +D+
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255
Query: 312 RTHSDYPTAITREGDVVCGL---KWSPNGRYLASGSNN-TVKIWDFRQLDAKRPLGL--- 364
R +D +++CG+ +S +GR L +G ++ +WD + D L
Sbjct: 256 R--ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN 313
Query: 365 IVPKLKREGRELVTSHGKQDCSLKMW 390
V L + + G D LK+W
Sbjct: 314 RVSCLGVTDDGMAVATGSWDSFLKIW 339
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 61/161 (37%), Gaps = 14/161 (8%)
Query: 309 YDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPLG---- 363
+DV T Y + + DV+ + + SGS + T+K+W + LG
Sbjct: 92 WDVATGETYQRFVGHKSDVMS-VDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDW 150
Query: 364 ----LIVPKLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTC 419
+VP K + + D +K W + + + H I + SPD T
Sbjct: 151 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL 210
Query: 420 VAAASADETISIWNCFPRDKKRKARQVGSGSSLEFAILKQP 460
+A+A D I +WN +KA S F++ P
Sbjct: 211 IASAGKDGEIMLWNL----AAKKAMYTLSAQDEVFSLAFSP 247
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 10/115 (8%)
Query: 4 NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWD 63
+G L++ G I+ +++ T + D V L +SPN +LA+ + +K++
Sbjct: 207 DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ--DEVFSLAFSPNRYWLAAATATGIKVFS 264
Query: 64 FRQ---LDAKRPQVNNQCHLSAVKAI--AWCPWEPTLLATGGGICDQTVRLWNSM 113
+D RP+ + A+ AW TL A G D +R+W M
Sbjct: 265 LDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFA---GYTDNVIRVWQVM 316
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 61/161 (37%), Gaps = 14/161 (8%)
Query: 309 YDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPLG---- 363
+DV T Y + + DV+ + + SGS + T+K+W + LG
Sbjct: 86 WDVATGETYQRFVGHKSDVMS-VDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDW 144
Query: 364 ----LIVPKLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTC 419
+VP K + + D +K W + + + H I + SPD T
Sbjct: 145 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL 204
Query: 420 VAAASADETISIWNCFPRDKKRKARQVGSGSSLEFAILKQP 460
+A+A D I +WN +KA S F++ P
Sbjct: 205 IASAGKDGEIMLWNL----AAKKAMYTLSAQDEVFSLAFSP 241
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 10/115 (8%)
Query: 4 NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWD 63
+G L++ G I+ +++ T + D V L +SPN +LA+ + +K++
Sbjct: 201 DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ--DEVFSLAFSPNRYWLAAATATGIKVFS 258
Query: 64 FRQ---LDAKRPQVNNQCHLSAVKAI--AWCPWEPTLLATGGGICDQTVRLWNSM 113
+D RP+ + A+ AW TL A G D +R+W M
Sbjct: 259 LDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFA---GYTDNVIRVWQVM 310
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 61/161 (37%), Gaps = 14/161 (8%)
Query: 309 YDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPLG---- 363
+DV T Y + + DV+ + + SGS + T+K+W + LG
Sbjct: 92 WDVATGETYQRFVGHKSDVMS-VDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDW 150
Query: 364 ----LIVPKLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTC 419
+VP K + + D +K W + + + H I + SPD T
Sbjct: 151 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL 210
Query: 420 VAAASADETISIWNCFPRDKKRKARQVGSGSSLEFAILKQP 460
+A+A D I +WN +KA S F++ P
Sbjct: 211 IASAGKDGEIMLWNL----AAKKAMYTLSAQDEVFSLAFSP 247
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 10/115 (8%)
Query: 4 NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWD 63
+G L++ G I+ +++ T + D V L +SPN +LA+ + +K++
Sbjct: 207 DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ--DEVFSLAFSPNRYWLAAATATGIKVFS 264
Query: 64 FRQ---LDAKRPQVNNQCHLSAVKAI--AWCPWEPTLLATGGGICDQTVRLWNSM 113
+D RP+ + A+ AW TL A G D +R+W M
Sbjct: 265 LDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFA---GYTDNVIRVWQVM 316
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 61/161 (37%), Gaps = 14/161 (8%)
Query: 309 YDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPLG---- 363
+DV T Y + + DV+ + + SGS + T+K+W + LG
Sbjct: 92 WDVATGETYQRFVGHKSDVMS-VDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDW 150
Query: 364 ----LIVPKLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTC 419
+VP K + + D +K W + + + H I + SPD T
Sbjct: 151 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL 210
Query: 420 VAAASADETISIWNCFPRDKKRKARQVGSGSSLEFAILKQP 460
+A+A D I +WN +KA S F++ P
Sbjct: 211 IASAGKDGEIMLWNL----AAKKAMYTLSAQDEVFSLAFSP 247
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 10/112 (8%)
Query: 4 NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWD 63
+G L++ G I+ +++ T + D V L +SPN +LA+ + +K++
Sbjct: 207 DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ--DEVFSLAFSPNRYWLAAATATGIKVFS 264
Query: 64 FRQ---LDAKRPQVNNQCHLSAVKAI--AWCPWEPTLLATGGGICDQTVRLW 110
+D RP+ + A+ AW TL A G D +R+W
Sbjct: 265 LDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFA---GYTDNVIRVW 313
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 61/161 (37%), Gaps = 14/161 (8%)
Query: 309 YDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPLG---- 363
+DV T Y + + DV+ + + SGS + T+K+W + LG
Sbjct: 92 WDVATGETYQRFVGHKSDVMS-VDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDW 150
Query: 364 ----LIVPKLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTC 419
+VP K + + D +K W + + + H I + SPD T
Sbjct: 151 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL 210
Query: 420 VAAASADETISIWNCFPRDKKRKARQVGSGSSLEFAILKQP 460
+A+A D I +WN +KA S F++ P
Sbjct: 211 IASAGKDGEIMLWNL----AAKKAMYTLSAQDEVFSLAFSP 247
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 10/115 (8%)
Query: 4 NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWD 63
+G L++ G I+ +++ T + D V L +SPN +LA+ + +K++
Sbjct: 207 DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ--DEVFSLAFSPNRYWLAAATATGIKVFS 264
Query: 64 FRQ---LDAKRPQVNNQCHLSAVKAI--AWCPWEPTLLATGGGICDQTVRLWNSM 113
+D RP+ + A+ AW TL A G D +R+W M
Sbjct: 265 LDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFA---GYTDNVIRVWQVM 316
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 14/122 (11%)
Query: 324 EGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKRPLGLI----------VPKLKREG 373
G+VVC + S R++ +G VK+WD K P+ + KL +G
Sbjct: 50 HGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG 109
Query: 374 RELVTSHGKQDCSLKMWEY--PRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISI 431
L+ G + +L +W+ P + EL + +SPD + +D I++
Sbjct: 110 CTLIV--GGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV 167
Query: 432 WN 433
W+
Sbjct: 168 WD 169
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 35 EGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKRPQVNNQC 78
G+VVC + S R++ +G VK+WD K P C
Sbjct: 50 HGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDC 93
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 60/161 (37%), Gaps = 14/161 (8%)
Query: 309 YDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPLG---- 363
+DV T Y + + DV + + SGS + T+K+W + LG
Sbjct: 92 WDVATGETYQRFVGHKSDVXS-VDIDKKASXIISGSRDKTIKVWTIKGQCLATLLGHNDW 150
Query: 364 ----LIVPKLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTC 419
+VP K + + D +K W + + + H I + SPD T
Sbjct: 151 VSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL 210
Query: 420 VAAASADETISIWNCFPRDKKRKARQVGSGSSLEFAILKQP 460
+A+A D I +WN +KA S F++ P
Sbjct: 211 IASAGKDGEIXLWNL----AAKKAXYTLSAQDEVFSLAFSP 247
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Query: 37 DVVCGLKWSPNGRYLASGSNNTVKIWDFRQ---LDAKRPQVNNQCHLSAVKAI--AWCPW 91
D V L +SPN +LA+ + +K++ +D RP+ + A+ AW
Sbjct: 238 DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSAD 297
Query: 92 EPTLLATGGGICDQTVRLW 110
TL A G D +R+W
Sbjct: 298 GQTLFA---GYTDNVIRVW 313
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 88/194 (45%), Gaps = 11/194 (5%)
Query: 252 RTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQV--IAMCWNGNLLSCGTIGGNILHY 309
T +A +++ +I LW + + I+ + +A + L+ GT G + +
Sbjct: 90 HTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIF 149
Query: 310 DVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPL-GLIVP 367
V + + TR G + + +SP+G+YLASG+ + + I+D L G +P
Sbjct: 150 GVESGKKEYSLDTR-GKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMP 208
Query: 368 ----KLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAA 423
+ + LVT+ D +K+++ +L L H +L+ PD T ++
Sbjct: 209 IRSLTFSPDSQLLVTA--SDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSS 266
Query: 424 SADETISIWNCFPR 437
S+D+++ +W+ R
Sbjct: 267 SSDKSVKVWDVGTR 280
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/222 (21%), Positives = 93/222 (41%), Gaps = 18/222 (8%)
Query: 227 TNKTQLLVEYPTYDNAYISCVAW---KPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTH 283
TN+ +L + + I VAW K ++ VT + + + +W ++ERL +
Sbjct: 18 TNQYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLE 77
Query: 284 MHQV----IAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY 339
HQ+ + + + + ++ +I +D+ + D L +SP+ +Y
Sbjct: 78 GHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWT-LAFSPDSQY 136
Query: 340 LASGSN-NTVKIWDFR------QLDAKRPLGLIVPKLKREGRELVTSHGKQDCSLKMWEY 392
LA+G++ V I+ LD + L + +G+ L + G D + +++
Sbjct: 137 LATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIA-YSPDGKYLAS--GAIDGIINIFDI 193
Query: 393 PRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNC 434
L+ L+ H I S SPD + AS D I I++
Sbjct: 194 ATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDV 235
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 8 LSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDF 64
L+ GT G + + V + + TR G + + +SP+G+YLASG+ + + I+D
Sbjct: 137 LATGTHVGKVNIFGVESGKKEYSLDTR-GKFILSIAYSPDGKYLASGAIDGIINIFDI 193
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/171 (21%), Positives = 70/171 (40%), Gaps = 11/171 (6%)
Query: 280 LRTHMHQVIAMCWNGN---LLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPN 336
+R H V C++ + + SCG + + T E +V+C +S +
Sbjct: 617 VRPHTDAVYHACFSEDGQRIASCGA-DKTLQVFKAETGEKLLEIKAHEDEVLC-CAFSTD 674
Query: 337 GRYLASGS-NNTVKIW-----DFRQLDAKRPLGLIVPKLKREGRELVTSHGKQDCSLKMW 390
R++A+ S + VKIW + + + L+ + G DC LK+W
Sbjct: 675 DRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLW 734
Query: 391 EYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKR 441
+ + + H + SPD +A+ SAD T+ +W+ ++++
Sbjct: 735 DLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERK 785
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 7/103 (6%)
Query: 336 NGRYLASGSNNTVKIWDF----RQLDAKRPLGLIVP-KLKREGRELVTSHGKQDCSLKMW 390
N R L+ + TVK+W+ ++ D G ++ + + + ++ D + K+W
Sbjct: 1061 NSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSA--DKTAKIW 1118
Query: 391 EYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 433
+ L + EL+ H + + S D T +A + I IWN
Sbjct: 1119 SFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWN 1161
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 20/124 (16%)
Query: 311 VRTHSDYPTAITREGDVVCGL-KWSPNGRYLASGSNNTVKIWDFRQLDAKRPLGLIVPKL 369
++ +D T I+ D + W + G TVK DFR L R L
Sbjct: 1015 IQFTADEKTLISSSDDAEIQVWNWQLDKCIFLRGHQETVK--DFRLLKNSRLLSWSF--- 1069
Query: 370 KREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETI 429
D ++K+W + ++ HQ +LS +S D T ++ SAD+T
Sbjct: 1070 --------------DGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTA 1115
Query: 430 SIWN 433
IW+
Sbjct: 1116 KIWS 1119
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Query: 27 DYPTAITREGDVVCGLKWS--PNGRYLASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVK 84
D T T VV + W + + + + IWD R + +P + H + V
Sbjct: 218 DAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVN 277
Query: 85 AIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCH 120
+++ P+ +LATG D+TV LW+ N K K H
Sbjct: 278 CLSFNPYSEFILATGS--ADKTVALWDLRNLKLKLH 311
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 36 GDVVCGLKWSPNGRY-LASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEP 93
+V C L ++P + LA+GS + TV +WD R L K + H + + W P
Sbjct: 274 AEVNC-LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF--ESHKDEIFQVQWSPHNE 330
Query: 94 TLLATGGGICDQTVRLWN-SMNGKEKC 119
T+LA+ G D+ + +W+ S G+E+
Sbjct: 331 TILASSG--TDRRLNVWDLSKIGEEQS 355
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 48/100 (48%), Gaps = 7/100 (7%)
Query: 209 HDTL--AVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYI 266
H++L +VA D + W+T++N T A ++C+++ P + + T + + +
Sbjct: 239 HESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTV 298
Query: 267 DLWHEQEERL-IQKLRTHMHQVIAMCWNGN----LLSCGT 301
LW + +L + +H ++ + W+ + L S GT
Sbjct: 299 ALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT 338
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 89/218 (40%), Gaps = 20/218 (9%)
Query: 232 LLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKL---RTHMHQVI 288
LL P + ++ +AW P T LA I +W + + I K H V
Sbjct: 7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGG-DRRIRIWGTEGDSWICKSVLSEGHQRTVR 65
Query: 289 AMCWN--GNLLSCGTIGGNILHYDVRTHSDYPTAITREG--DVVCGLKWSPNGRYLASGS 344
+ W+ GN L+ + + + D+ T EG + V + W+P+G LA+ S
Sbjct: 66 KVAWSPCGNYLASASFDATTCIWK-KNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCS 124
Query: 345 -NNTVKIWDFRQLDAKRPLGLIVPKLK-------REGRELVTSHGKQDCSLKMW--EYPR 394
+ +V +W+ + D + ++ + +EL+ S D ++K++ E
Sbjct: 125 RDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDD-TVKLYREEEDD 183
Query: 395 LHLIEELKIHQERILSAVLSPDQTCVAAASADETISIW 432
L+ H+ + S P +A+ S D T+ IW
Sbjct: 184 WVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 17/76 (22%)
Query: 42 LKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQC------HLSAVKAIAWCPWEPT 94
+ WSP G YLAS S + T IW K+ Q + +C H + VK++AW P
Sbjct: 67 VAWSPCGNYLASASFDATTCIW-------KKNQDDFECVTTLEGHENEVKSVAWAP-SGN 118
Query: 95 LLATGGGICDQTVRLW 110
LLAT D++V +W
Sbjct: 119 LLATCSR--DKSVWVW 132
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 54 GSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSM 113
+ + IWD R + +P H + V +++ P+ +LATG D+TV LW+
Sbjct: 251 ADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGS--ADKTVALWDLR 308
Query: 114 NGKEKCH 120
N K K H
Sbjct: 309 NLKLKLH 315
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Query: 30 TAITREGDVVCGLKWSPNGRY-LASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIA 87
T +V C L ++P + LA+GS + TV +WD R L K + H + +
Sbjct: 272 TVDAHTAEVNC-LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF--ESHKDEIFQVQ 328
Query: 88 WCPWEPTLLATGGGICDQTVRLWN-SMNGKEKC 119
W P T+LA+ G D+ + +W+ S G+E+
Sbjct: 329 WSPHNETILASSG--TDRRLHVWDLSKIGEEQS 359
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 73/179 (40%), Gaps = 20/179 (11%)
Query: 185 KPERILEAPSIINDFYTSGLDWGYH---DTL--AVALDTSVYTWNTKTNKTQLLVEYPTY 239
K R+++A +I D +H ++L +VA D + W+T+ N T
Sbjct: 216 KEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA 275
Query: 240 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL-IQKLRTHMHQVIAMCWNGN--- 295
A ++C+++ P + + T + + + LW + +L + +H ++ + W+ +
Sbjct: 276 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNET 335
Query: 296 -LLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWDF 353
L S GT D R H + I E P ++ G +T KI DF
Sbjct: 336 ILASSGT--------DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG--HTAKISDF 384
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 54 GSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSM 113
+ + IWD R + +P H + V +++ P+ +LATG D+TV LW+
Sbjct: 253 ADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGS--ADKTVALWDLR 310
Query: 114 NGKEKCH 120
N K K H
Sbjct: 311 NLKLKLH 317
Score = 35.4 bits (80), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Query: 30 TAITREGDVVCGLKWSPNGRY-LASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIA 87
T +V C L ++P + LA+GS + TV +WD R L K + H + +
Sbjct: 274 TVDAHTAEVNC-LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF--ESHKDEIFQVQ 330
Query: 88 WCPWEPTLLATGGGICDQTVRLWN-SMNGKEKC 119
W P T+LA+ G D+ + +W+ S G+E+
Sbjct: 331 WSPHNETILASSG--TDRRLHVWDLSKIGEEQS 361
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 73/179 (40%), Gaps = 20/179 (11%)
Query: 185 KPERILEAPSIINDFYTSGLDWGYH---DTL--AVALDTSVYTWNTKTNKTQLLVEYPTY 239
K R+++A +I D +H ++L +VA D + W+T+ N T
Sbjct: 218 KEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA 277
Query: 240 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL-IQKLRTHMHQVIAMCWNGN--- 295
A ++C+++ P + + T + + + LW + +L + +H ++ + W+ +
Sbjct: 278 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNET 337
Query: 296 -LLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWDF 353
L S GT D R H + I E P ++ G +T KI DF
Sbjct: 338 ILASSGT--------DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG--HTAKISDF 386
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 50 YLASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRL 109
+ + + + IWD R + +P H + V +++ P+ +LATG D+TV L
Sbjct: 251 FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGS--ADKTVAL 308
Query: 110 WNSMNGKEKCH 120
W+ N K K H
Sbjct: 309 WDLRNLKLKLH 319
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Query: 30 TAITREGDVVCGLKWSPNGRY-LASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIA 87
T +V C L ++P + LA+GS + TV +WD R L K + H + +
Sbjct: 276 TVDAHTAEVNC-LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF--ESHKDEIFQVQ 332
Query: 88 WCPWEPTLLATGGGICDQTVRLWN-SMNGKEKC 119
W P T+LA+ G D+ + +W+ S G+E+
Sbjct: 333 WSPHNETILASSG--TDRRLHVWDLSKIGEEQS 363
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/127 (21%), Positives = 57/127 (44%), Gaps = 10/127 (7%)
Query: 185 KPERILEAPSIINDFYTSGLDWGYH---DTL--AVALDTSVYTWNTKTNKTQLLVEYPTY 239
K R+++A +I D +H ++L +VA D + W+T+ N T
Sbjct: 220 KEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA 279
Query: 240 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL-IQKLRTHMHQVIAMCWNGN--- 295
A ++C+++ P + + T + + + LW + +L + +H ++ + W+ +
Sbjct: 280 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNET 339
Query: 296 -LLSCGT 301
L S GT
Sbjct: 340 ILASSGT 346
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 65/147 (44%), Gaps = 5/147 (3%)
Query: 212 LAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTD-LAVTNTCTEYIDLWH 270
++ + D ++ WNT + E ++SCV + P T V+ + + + +W+
Sbjct: 488 VSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWN 547
Query: 271 EQEERLIQKLRTHMHQV--IAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVV 328
+L L H V +A+ +G+L + G G +L +D+ + V+
Sbjct: 548 LSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYS--LEANSVI 605
Query: 329 CGLKWSPNGRYLASGSNNTVKIWDFRQ 355
L +SPN +L + + + +KIWD
Sbjct: 606 HALCFSPNRYWLCAATEHGIKIWDLES 632
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 53/141 (37%), Gaps = 18/141 (12%)
Query: 304 GNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLD----- 357
G +L +R H+D TAI D N + S S + ++ +W + D
Sbjct: 371 GLVLKGTMRAHTDMVTAIATPID---------NADIIVSASRDKSIILWKLTKDDKAYGV 421
Query: 358 AKRPL---GLIVPKLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLS 414
A+R L V + G D L++W+ H + +LS S
Sbjct: 422 AQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFS 481
Query: 415 PDQTCVAAASADETISIWNCF 435
D + +AS D TI +WN
Sbjct: 482 LDNRQIVSASRDRTIKLWNTL 502
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 58/111 (52%), Gaps = 13/111 (11%)
Query: 334 SPNGRYLASGS-NNTVKIWDFRQ-LDAKRPLG----LIVPKLKREGRELVTSHGKQDCSL 387
S +G++ SGS + +++WD + +R +G ++ + R++V++ +D ++
Sbjct: 439 SSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSA--SRDRTI 496
Query: 388 KMWEYP---RLHLIEELKIHQERILSAVLSPD--QTCVAAASADETISIWN 433
K+W + + E + H++ + SP+ Q + +AS D+T+ +WN
Sbjct: 497 KLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWN 547
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 48/120 (40%), Gaps = 15/120 (12%)
Query: 4 NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWD 63
+G+L + G G +L +D+ + V+ L +SPN +L + + + +KIWD
Sbjct: 572 DGSLCASGGKDGVVLLWDLAEGKKLYS--LEANSVIHALCFSPNRYWLCAATEHGIKIWD 629
Query: 64 FR----------QLDAKRPQVNNQCHLSAVKAIAWCP---WEPTLLATGGGICDQTVRLW 110
L A+ + +N + + + +C W G D +R+W
Sbjct: 630 LESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVW 689
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 81/183 (44%), Gaps = 22/183 (12%)
Query: 276 LIQKLRTHMHQVIAMCWNGNLLSCGTIGGNI----LHYDVRTHSDYPTAITREGDVVCGL 331
LI+ L+ + ++ + ++ +L+ G+ I + YD T D T + +
Sbjct: 6 LIKSLKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDE-TAHKKAIRSV 64
Query: 332 KWSPNGRYLASGS-NNTVKIWDFRQLDAKRPLGL----IVPKLKREGRELVTSHG----- 381
W P+ LA+GS ++TV IW ++ A R + I+ + E + + S+
Sbjct: 65 AWRPHTSLLAAGSFDSTVSIW-AKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLA 123
Query: 382 --KQDCSLKMWEY----PRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCF 435
+D S+ +WE I L+ H + + + P + +A++S D+T+ IW +
Sbjct: 124 TCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDY 183
Query: 436 PRD 438
D
Sbjct: 184 DDD 186
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 39 VCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNN-QCHLSAVKAIAWCPWEPTLL 96
V G+ WS +G YLA+ S + +V IW+ + + ++ Q H VK + W P E L
Sbjct: 110 VKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLA 169
Query: 97 ATGGGICDQTVRLWNSMNGKEKC 119
++ D TVR+W + +C
Sbjct: 170 SSS---YDDTVRIWKDYDDDWEC 189
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 13/66 (19%)
Query: 51 LASGSNN------TVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICD 104
LA+GS + +VK DF +D ++ H A++++AW P +LLA G D
Sbjct: 27 LATGSTDRKIKLVSVKYDDFTLIDV----LDETAHKKAIRSVAWRP-HTSLLAAGS--FD 79
Query: 105 QTVRLW 110
TV +W
Sbjct: 80 STVSIW 85
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 76/162 (46%), Gaps = 20/162 (12%)
Query: 217 DTSVYTWNTKTNKTQLLVEYPTYDNA---YISCVAWKPRTTD-LAVTNTCTEYIDLWHEQ 272
D ++ WNT + +Y D + ++SCV + P +++ + V+ + + +W+
Sbjct: 126 DKTIKLWNTLG-----VCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA 180
Query: 273 EERLIQKLRTHMH--QVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCG 330
+L H + + +G+L + G G + +D+ T GD++
Sbjct: 181 NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL--DGGDIINA 238
Query: 331 LKWSPNGRYLASGSNNTVKIWDFRQLDAKRPLGLIVPKLKRE 372
L +SPN +L + + ++KIWD L+ K +IV +LK+E
Sbjct: 239 LCFSPNRYWLCAATGPSIKIWD---LEGK----IIVDELKQE 273
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 11/113 (9%)
Query: 4 NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWD 63
+G+L + G G + +D+ T GD++ L +SPN +L + + ++KIWD
Sbjct: 203 DGSLCASGGKDGQAMLWDLNEGKHLYTL--DGGDIINALCFSPNRYWLCAATGPSIKIWD 260
Query: 64 FR------QLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLW 110
+L + +++ ++AW TL A G D VR+W
Sbjct: 261 LEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFA---GYTDNLVRVW 310
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/207 (19%), Positives = 84/207 (40%), Gaps = 15/207 (7%)
Query: 241 NAYISCVAWKPRTTDLAVTNTCTEYIDLWH----EQEERLIQK-LRTHMHQV--IAMCWN 293
N +++ +A P+ D+ ++ + + I +W E + Q+ LR H H V + + +
Sbjct: 15 NGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSD 74
Query: 294 GNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWD 352
G G+ G + +D+ T + + DV+ + +S + R + SGS + T+K+W+
Sbjct: 75 GQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVL-SVAFSSDNRQIVSGSRDKTIKLWN 133
Query: 353 ------FRQLDAKRPLGLIVPKLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQE 406
+ D + + + D +K+W L H
Sbjct: 134 TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTG 193
Query: 407 RILSAVLSPDQTCVAAASADETISIWN 433
+ + +SPD + A+ D +W+
Sbjct: 194 YLNTVTVSPDGSLCASGGKDGQAMLWD 220
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 25/55 (45%)
Query: 381 GKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCF 435
G D +L++W+ H + +LS S D + + S D+TI +WN
Sbjct: 81 GSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL 135
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 62/134 (46%), Gaps = 9/134 (6%)
Query: 4 NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIW 62
+G G+ G + +D+ T + + DV+ + +S + R + SGS + T+K+W
Sbjct: 74 DGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVL-SVAFSSDNRQIVSGSRDKTIKLW 132
Query: 63 DFRQLDAKRPQVNNQCHLSAVKAIAWCP--WEPTLLATGGGICDQTVRLWNSMNGKEKCH 120
+ L + V ++ H V + + P P +++ G D+ V++WN N K K +
Sbjct: 133 N--TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG---WDKLVKVWNLANCKLKTN 187
Query: 121 VKTDSQQANDETIS 134
+ N T+S
Sbjct: 188 HIGHTGYLNTVTVS 201
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 76/162 (46%), Gaps = 20/162 (12%)
Query: 217 DTSVYTWNTKTNKTQLLVEYPTYDNA---YISCVAWKPRTTD-LAVTNTCTEYIDLWHEQ 272
D ++ WNT + +Y D + ++SCV + P +++ + V+ + + +W+
Sbjct: 149 DKTIKLWNTLG-----VCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA 203
Query: 273 EERLIQKLRTHMH--QVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCG 330
+L H + + +G+L + G G + +D+ T GD++
Sbjct: 204 NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL--DGGDIINA 261
Query: 331 LKWSPNGRYLASGSNNTVKIWDFRQLDAKRPLGLIVPKLKRE 372
L +SPN +L + + ++KIWD L+ K +IV +LK+E
Sbjct: 262 LCFSPNRYWLCAATGPSIKIWD---LEGK----IIVDELKQE 296
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 11/113 (9%)
Query: 4 NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWD 63
+G+L + G G + +D+ T GD++ L +SPN +L + + ++KIWD
Sbjct: 226 DGSLCASGGKDGQAMLWDLNEGKHLYTL--DGGDIINALCFSPNRYWLCAATGPSIKIWD 283
Query: 64 FR------QLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLW 110
+L + +++ ++AW TL A G D VR+W
Sbjct: 284 LEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFA---GYTDNLVRVW 333
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/207 (19%), Positives = 84/207 (40%), Gaps = 15/207 (7%)
Query: 241 NAYISCVAWKPRTTDLAVTNTCTEYIDLWH----EQEERLIQK-LRTHMHQV--IAMCWN 293
N +++ +A P+ D+ ++ + + I +W E + Q+ LR H H V + + +
Sbjct: 38 NGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSD 97
Query: 294 GNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWD 352
G G+ G + +D+ T + + DV+ + +S + R + SGS + T+K+W+
Sbjct: 98 GQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLS-VAFSSDNRQIVSGSRDKTIKLWN 156
Query: 353 ------FRQLDAKRPLGLIVPKLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQE 406
+ D + + + D +K+W L H
Sbjct: 157 TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTG 216
Query: 407 RILSAVLSPDQTCVAAASADETISIWN 433
+ + +SPD + A+ D +W+
Sbjct: 217 YLNTVTVSPDGSLCASGGKDGQAMLWD 243
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 25/55 (45%)
Query: 381 GKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCF 435
G D +L++W+ H + +LS S D + + S D+TI +WN
Sbjct: 104 GSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL 158
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 62/134 (46%), Gaps = 9/134 (6%)
Query: 4 NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIW 62
+G G+ G + +D+ T + + DV+ + +S + R + SGS + T+K+W
Sbjct: 97 DGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLS-VAFSSDNRQIVSGSRDKTIKLW 155
Query: 63 DFRQLDAKRPQVNNQCHLSAVKAIAWCP--WEPTLLATGGGICDQTVRLWNSMNGKEKCH 120
+ L + V ++ H V + + P P +++ G D+ V++WN N K K +
Sbjct: 156 N--TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG---WDKLVKVWNLANCKLKTN 210
Query: 121 VKTDSQQANDETIS 134
+ N T+S
Sbjct: 211 HIGHTGYLNTVTVS 224
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 345 NNTVKIWDFRQLDAKRPL-GLIVPKLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKI 403
+NT+KIWD L+ KR L G L + E V G D ++++W+ ++ L
Sbjct: 152 DNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIH 211
Query: 404 HQERILSAVLSPDQTCVAAASADETISIWN 433
H E +L L + + S D +I++W+
Sbjct: 212 HCEAVLH--LRFNNGMMVTCSKDRSIAVWD 239
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 23/112 (20%)
Query: 338 RYLASGS-NNTVKIWD------FRQLDAKRPLGLIVPKLKREGRELVTSHGKQDCSLKMW 390
R + SGS +NT+++WD R L+ L V ++ + + +V+ G D +K+W
Sbjct: 307 RLVVSGSSDNTIRLWDIECGACLRVLEGHEEL---VRCIRFDNKRIVS--GAYDGKIKVW 361
Query: 391 EY-----PRLH----LIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 433
+ PR + L H R+ L D+ + ++S D+TI IW+
Sbjct: 362 DLVAALDPRAPAGTLCLRTLVEHSGRVFR--LQFDEFQIVSSSHDDTILIWD 411
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Query: 56 NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNG 115
+NT+KIWD L+ KR H +V + ++ ++ TG D TVR+W+ G
Sbjct: 152 DNTIKIWDKNTLECKRILTG---HTGSVLCLQ---YDERVIITGSS--DSTVRVWDVNTG 203
Query: 116 K 116
+
Sbjct: 204 E 204
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 54/145 (37%), Gaps = 19/145 (13%)
Query: 314 HSDYPTAITREGDVVCGL--KWSPNGRYLASGS-NNTVKIWDFRQLDAKRPLGL------ 364
HSD+ T+I V G K + + L SGS + TV IW + + G+
Sbjct: 20 HSDWVTSI------VAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALT 73
Query: 365 ----IVPKLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCV 420
V L D +L++W+ + HQ + S SPD +
Sbjct: 74 GHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQI 133
Query: 421 AAASADETISIWNCFPRDKKRKARQ 445
+A A+ I +WN K A +
Sbjct: 134 LSAGAEREIKLWNILGECKFSSAEK 158
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 50 YLASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRL 109
+ + + + IWD R +P H + V +++ P+ +LATG D+TV L
Sbjct: 245 FGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGS--ADKTVAL 302
Query: 110 WNSMNGKEKCH 120
W+ N K K H
Sbjct: 303 WDLRNLKLKLH 313
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 36/191 (18%), Positives = 72/191 (37%), Gaps = 20/191 (10%)
Query: 279 KLRTHMHQVIAMCWNGNL---LSCGTIGGNILHYDVRTHS------DYPTAITREGDVVC 329
+LR H + + WN NL L + + +D+ D T VV
Sbjct: 174 RLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVE 233
Query: 330 GLKWS--PNGRYLASGSNNTVKIWDFRQLDAKRPLGLIVPKLKREG-------RELVTSH 380
+ W + + + + IWD R +P L+ E + +
Sbjct: 234 DVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILAT 293
Query: 381 GKQDCSLKMWEYPRLHL-IEELKIHQERILSAVLSP-DQTCVAAASADETISIWNCFPRD 438
G D ++ +W+ L L + + H++ I SP ++T +A++ D +++W+
Sbjct: 294 GSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIG 353
Query: 439 KKRKARQVGSG 449
+++ A G
Sbjct: 354 EEQSAEDAEDG 364
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
Query: 36 GDVVCGLKWSPNGRY-LASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEP 93
+V C L ++P + LA+GS + TV +WD R L K + H + + W P
Sbjct: 276 AEVNC-LSFNPYSEFILATGSADKTVALWDLRNLKLKLHTF--ESHKDEIFQVHWSPHNE 332
Query: 94 TLLATGGGICDQTVRLWN-SMNGKEK 118
T+LA+ G D+ + +W+ S G+E+
Sbjct: 333 TILASSG--TDRRLNVWDLSKIGEEQ 356
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 48/100 (48%), Gaps = 7/100 (7%)
Query: 209 HDTL--AVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYI 266
H++L +VA D + W+T++N T A ++C+++ P + + T + + +
Sbjct: 241 HESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTV 300
Query: 267 DLWHEQEERL-IQKLRTHMHQVIAMCWNGN----LLSCGT 301
LW + +L + +H ++ + W+ + L S GT
Sbjct: 301 ALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGT 340
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 50 YLASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRL 109
+ + + + IWD R +P H + V +++ P+ +LATG D+TV L
Sbjct: 245 FGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGS--ADKTVAL 302
Query: 110 WNSMNGKEKCH 120
W+ N K K H
Sbjct: 303 WDLRNLKLKLH 313
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 36/191 (18%), Positives = 72/191 (37%), Gaps = 20/191 (10%)
Query: 279 KLRTHMHQVIAMCWNGNL---LSCGTIGGNILHYDVRTHS------DYPTAITREGDVVC 329
+LR H + + WN NL L + + +D+ D T VV
Sbjct: 174 RLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVE 233
Query: 330 GLKWS--PNGRYLASGSNNTVKIWDFRQLDAKRPLGLIVPKLKREG-------RELVTSH 380
+ W + + + + IWD R +P L+ E + +
Sbjct: 234 DVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILAT 293
Query: 381 GKQDCSLKMWEYPRLHL-IEELKIHQERILSAVLSP-DQTCVAAASADETISIWNCFPRD 438
G D ++ +W+ L L + + H++ I SP ++T +A++ D +++W+
Sbjct: 294 GSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIG 353
Query: 439 KKRKARQVGSG 449
+++ A G
Sbjct: 354 EEQSAEDAEDG 364
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
Query: 36 GDVVCGLKWSPNGRY-LASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEP 93
+V C L ++P + LA+GS + TV +WD R L K + H + + W P
Sbjct: 276 AEVNC-LSFNPYSEFILATGSADKTVALWDLRNLKLKLHTF--ESHKDEIFQVHWSPHNE 332
Query: 94 TLLATGGGICDQTVRLWN-SMNGKEK 118
T+LA+ G D+ + +W+ S G+E+
Sbjct: 333 TILASSG--TDRRLNVWDLSKIGEEQ 356
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 48/100 (48%), Gaps = 7/100 (7%)
Query: 209 HDTL--AVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYI 266
H++L +VA D + W+T++N T A ++C+++ P + + T + + +
Sbjct: 241 HESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTV 300
Query: 267 DLWHEQEERL-IQKLRTHMHQVIAMCWNGN----LLSCGT 301
LW + +L + +H ++ + W+ + L S GT
Sbjct: 301 ALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGT 340
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 36/171 (21%), Positives = 69/171 (40%), Gaps = 11/171 (6%)
Query: 280 LRTHMHQVIAMCWNGN---LLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPN 336
+R H V C++ + + SCG + + T E +V+C +S +
Sbjct: 618 VRPHTDAVYHACFSQDGQRIASCGA-DKTLQVFKAETGEKLLDIKAHEDEVLC-CAFSSD 675
Query: 337 GRYLASGS-NNTVKIWD-----FRQLDAKRPLGLIVPKLKREGRELVTSHGKQDCSLKMW 390
Y+A+ S + VKIWD + + + L+ + G D LK+W
Sbjct: 676 DSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW 735
Query: 391 EYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKR 441
+ + + H + SPD +A+ SAD T+ +W+ ++++
Sbjct: 736 DLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERK 786
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 56/109 (51%), Gaps = 10/109 (9%)
Query: 331 LKWSPNGRYLASGSNNTV-KIW-----DFRQLDAKRPLGLIVPKLKREGRELVTSHGKQD 384
++++ +G+ L S S ++V ++W D+ L A + + +L ++ R L S D
Sbjct: 1016 IQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQE-TVKDFRLLQDSRLLSWSF---D 1071
Query: 385 CSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 433
++K+W + + HQ +LS +S D T ++ SAD+T IW+
Sbjct: 1072 GTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWS 1120
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 7/103 (6%)
Query: 336 NGRYLASGSNNTVKIWDFRQLDAKRPL----GLIVP-KLKREGRELVTSHGKQDCSLKMW 390
+ R L+ + TVK+W+ +R G ++ + + + ++ D + K+W
Sbjct: 1062 DSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSA--DKTAKIW 1119
Query: 391 EYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 433
+ L + ELK H + + S D +A + I IWN
Sbjct: 1120 SFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1162
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 36/171 (21%), Positives = 69/171 (40%), Gaps = 11/171 (6%)
Query: 280 LRTHMHQVIAMCWNGN---LLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPN 336
+R H V C++ + + SCG + + T E +V+C +S +
Sbjct: 611 VRPHTDAVYHACFSQDGQRIASCGA-DKTLQVFKAETGEKLLDIKAHEDEVLC-CAFSSD 668
Query: 337 GRYLASGS-NNTVKIWD-----FRQLDAKRPLGLIVPKLKREGRELVTSHGKQDCSLKMW 390
Y+A+ S + VKIWD + + + L+ + G D LK+W
Sbjct: 669 DSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW 728
Query: 391 EYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKR 441
+ + + H + SPD +A+ SAD T+ +W+ ++++
Sbjct: 729 DLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERK 779
Score = 35.0 bits (79), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 56/109 (51%), Gaps = 10/109 (9%)
Query: 331 LKWSPNGRYLASGSNNTV-KIW-----DFRQLDAKRPLGLIVPKLKREGRELVTSHGKQD 384
++++ +G+ L S S ++V ++W D+ L A + + +L ++ R L S D
Sbjct: 1009 IQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQE-TVKDFRLLQDSRLLSWSF---D 1064
Query: 385 CSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 433
++K+W + + HQ +LS +S D T ++ SAD+T IW+
Sbjct: 1065 GTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWS 1113
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 50/121 (41%), Gaps = 23/121 (19%)
Query: 328 VCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPLGLIVPKLKREGR------------ 374
V + +SP+ R + SG +N +++W+ + G + L R
Sbjct: 112 VLSVAFSPDNRQIVSGGRDNALRVWNVK--------GECMHTLSRGAHTDWVSCVRFSPS 163
Query: 375 --ELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIW 432
V G D +K+W+ L+ +LK H + S +SPD + A++ D +W
Sbjct: 164 LDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLW 223
Query: 433 N 433
+
Sbjct: 224 D 224
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 384 DCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 433
D SL++W + H + +LS SPD + + D + +WN
Sbjct: 88 DHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWN 137
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 81/188 (43%), Gaps = 47/188 (25%)
Query: 275 RLIQKLRTHMHQVIAMCWNG---NLLSCGTIGGNILHYDVRTHSDYPTAI--TREGDVVC 329
R++QK + ++ W+ + ++ G+ GG+I+ ++ D PT I G +
Sbjct: 110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGI-KDKPTFIKGIGAGGSIT 168
Query: 330 GLKWSP---NGRYLAS------------------GSNNTVKIWDFRQLDAKRPLGLIVPK 368
GLK++P N Y +S S++T+ IW F LD ++V
Sbjct: 169 GLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIW-FCSLDVSASSRMVVTG 227
Query: 369 LKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTC---VAAASA 425
L+ GK+ +W L++H++++ L+P C +A AS
Sbjct: 228 DNVGNVILLNMDGKE-----LWN---------LRMHKKKVTHVALNP--CCDWFLATASV 271
Query: 426 DETISIWN 433
D+T+ IW+
Sbjct: 272 DQTVKIWD 279
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 50 YLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLAT 98
+LA+ S + TVKIWD RQ+ K + + H V A + P LL T
Sbjct: 265 FLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTT 314
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 81/188 (43%), Gaps = 47/188 (25%)
Query: 275 RLIQKLRTHMHQVIAMCWNG---NLLSCGTIGGNILHYDVRTHSDYPTAI--TREGDVVC 329
R++QK + ++ W+ + ++ G+ GG+I+ ++ D PT I G +
Sbjct: 110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGI-KDKPTFIKGIGAGGSIT 168
Query: 330 GLKWSP---NGRYLAS------------------GSNNTVKIWDFRQLDAKRPLGLIVPK 368
GLK++P N Y +S S++T+ IW F LD ++V
Sbjct: 169 GLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIW-FCSLDVSASSRMVVTG 227
Query: 369 LKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTC---VAAASA 425
L+ GK+ +W L++H++++ L+P C +A AS
Sbjct: 228 DNVGNVILLNMDGKE-----LWN---------LRMHKKKVTHVALNP--CCDWFLATASV 271
Query: 426 DETISIWN 433
D+T+ IW+
Sbjct: 272 DQTVKIWD 279
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 50 YLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLAT 98
+LA+ S + TVKIWD RQ+ K + + H V A + P LL T
Sbjct: 265 FLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTT 314
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 79/187 (42%), Gaps = 45/187 (24%)
Query: 275 RLIQKLRTHMHQVIAMCWNG---NLLSCGTIGGNILHYDVRTHSDYPTAI--TREGDVVC 329
R++QK + ++ W+ + ++ G+ GG+I+ ++ D PT I G +
Sbjct: 111 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGI-KDKPTFIKGIGAGGSIT 169
Query: 330 GLKWSP--NGRYLASGSNNTVKIWDFR------------------QLDAKRPLGLIVPKL 369
GLK++P ++ AS T ++ DF+ LD ++V
Sbjct: 170 GLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGD 229
Query: 370 KREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTC---VAAASAD 426
L+ GK+ +W L++H++++ L+P C +A AS D
Sbjct: 230 NVGNVILLNMDGKE-----LWN---------LRMHKKKVTHVALNP--CCDWFLATASVD 273
Query: 427 ETISIWN 433
+T+ IW+
Sbjct: 274 QTVKIWD 280
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 50 YLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLAT 98
+LA+ S + TVKIWD RQ+ K + + H V A + P LL T
Sbjct: 266 FLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTT 315
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 57/117 (48%), Gaps = 15/117 (12%)
Query: 328 VCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKR--PLGLIVPKLK------REGRELVT 378
V GL WSP+G +AS S + T+KIW+ L ++ P+G + + ++ ++
Sbjct: 242 VFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSIS 301
Query: 379 SHGKQDCSLKMWEYPRLHLIEELKI-HQERILSAVLSPDQTCVAAASADETISIWNC 434
++G + P L I++++ H + I + S D + +A A+ I+ W+
Sbjct: 302 ANG-----FINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDI 353
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 404 HQERILSAVLSPDQTCVAAASADETISIWNC 434
H + SPD T +A+ASAD+TI IWN
Sbjct: 238 HSGSVFGLTWSPDGTKIASASADKTIKIWNV 268
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 39 VCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKR 71
V GL WSP+G +AS S + T+KIW+ L ++
Sbjct: 242 VFGLTWSPDGTKIASASADKTIKIWNVATLKVEK 275
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 12/80 (15%)
Query: 39 VCGLKWSPNGRYLAS-GSNNTVKIWDFRQLDAKRPQV------NNQCHLSAVKAIAWCPW 91
V ++++P+G AS G + T+ +++ +D + V N H +V + W P
Sbjct: 193 VHSVRYNPDGSLFASTGGDGTIVLYN--GVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP- 249
Query: 92 EPTLLATGGGICDQTVRLWN 111
+ T +A+ D+T+++WN
Sbjct: 250 DGTKIASAS--ADKTIKIWN 267
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 13/115 (11%)
Query: 250 KPRTTDLAVTNTCTEYIDLWHEQEE---RLIQKLRTHMHQVIAMCWNGNL-LSCGTIG-- 303
KP + C I LW E+E+ + QKL H V + W ++ L TI
Sbjct: 175 KPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASC 234
Query: 304 ---GNILHY---DVRTHSDYPTAITREGDVVCGLKWSPNGRYLA-SGSNNTVKIW 351
G + + D +++ P + + DVV + WS LA SG +N V +W
Sbjct: 235 SQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLW 289
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 18/93 (19%)
Query: 39 VCGLKWSPNGRYL--ASGSNNTVKIWDFR----------QLDAKRPQV---NNQCHLSAV 83
+ + WSP Y+ + +++ VK+WD R Q + K+ Q N H V
Sbjct: 189 ILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKV 248
Query: 84 KAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK 116
+ + LL G D +RLWNS NG+
Sbjct: 249 NGLCFTSDGLHLLTVG---TDNRMRLWNSSNGE 278
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 46/111 (41%), Gaps = 8/111 (7%)
Query: 331 LKWSPN--GRYLASGSNNTVKIWDFRQLDAKRPLGLIVPKLKREGRELVTSH-----GKQ 383
++W P+ G + +S + T+K+WD L + T H G +
Sbjct: 105 VQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTR 164
Query: 384 DCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCV-AAASADETISIWN 433
+++ + L+ H++ IL+ SP + A ASAD + +W+
Sbjct: 165 GPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWD 215
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 30/61 (49%)
Query: 373 GRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIW 432
G + G D +L +W+ ++ + L H +RI S + ++ +AS D TI IW
Sbjct: 278 GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIW 337
Query: 433 N 433
+
Sbjct: 338 D 338
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 8/121 (6%)
Query: 234 VEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQ--KLRTHMHQVIAMC 291
+ Y ++ ISC AW T +A+ E + ++ + + +Q +L+ H QV +
Sbjct: 1 MAYHSFLVEPISCHAWNKDRTQIAICPNNHE-VHIYEKSGNKWVQVHELKEHNGQVTGID 59
Query: 292 W---NGNLLSCGTIGGNILHYDVRTHSDYPT-AITREGDVVCGLKWSPNGRYLASGSNNT 347
W + +++CGT N + ++ + PT I R ++W+PN + A GS +
Sbjct: 60 WAPDSNRIVTCGT-DRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSR 118
Query: 348 V 348
V
Sbjct: 119 V 119
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 8/121 (6%)
Query: 234 VEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQ--KLRTHMHQVIAMC 291
+ Y ++ ISC AW T +A+ E + ++ + + +Q +L+ H QV +
Sbjct: 1 MAYHSFLVEPISCHAWNKDRTQIAICPNNHE-VHIYEKSGNKWVQVHELKEHNGQVTGVD 59
Query: 292 W---NGNLLSCGTIGGNILHYDVRTHSDYPT-AITREGDVVCGLKWSPNGRYLASGSNNT 347
W + +++CGT N + ++ + PT I R ++W+PN + A GS +
Sbjct: 60 WAPDSNRIVTCGT-DRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSR 118
Query: 348 V 348
V
Sbjct: 119 V 119
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 7/68 (10%)
Query: 46 PNGRYLASGSNN-TVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICD 104
P+ Y+ + S++ T+KIWD++ K + H+S V + P P +++ G D
Sbjct: 196 PDKPYMITASDDLTIKIWDYQ---TKSCVATLEGHMSNVSFAVFHPTLPIIIS---GSED 249
Query: 105 QTVRLWNS 112
T+++WNS
Sbjct: 250 GTLKIWNS 257
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 7/68 (10%)
Query: 46 PNGRYLASGSNN-TVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICD 104
P+ Y+ + S++ T+KIWD++ K + H+S V + P P +++ G D
Sbjct: 196 PDKPYMITASDDLTIKIWDYQ---TKSCVATLEGHMSNVSFAVFHPTLPIIIS---GSED 249
Query: 105 QTVRLWNS 112
T+++WNS
Sbjct: 250 GTLKIWNS 257
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 20/127 (15%)
Query: 6 NLLSCGTIGGNILHYDVRTHSDYPTAIT--------REGDVVCGLKWSPN--GRYLASGS 55
N+L+ G G I +D+ ++ P+ T D V L W+ + + ++GS
Sbjct: 127 NVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGS 186
Query: 56 NNTVKIWDFR------QLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATG-GGICDQTVR 108
+N IWD + L P + LS V+ W P T +AT G D ++
Sbjct: 187 SNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVE---WHPKNSTRVATATGSDNDPSIL 243
Query: 109 LWNSMNG 115
+W+ N
Sbjct: 244 IWDLRNA 250
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 75/186 (40%), Gaps = 29/186 (15%)
Query: 277 IQKLRTHMHQVIAMCWNG---NLLSCGTIGGNILHYDVRTHSDYPTAIT--------REG 325
+ + H V + +N N+L+ G G I +D+ ++ P+ T
Sbjct: 106 MARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSV 165
Query: 326 DVVCGLKWSPN--GRYLASGSNNTVKIWDFR------QLDAKRPLGLIVPKL-------K 370
D V L W+ + + ++GS+N IWD + L P I +L K
Sbjct: 166 DEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPK 225
Query: 371 REGRELVTSHGKQDCSLKMWEYPRLHL-IEEL-KIHQERILSAV-LSPDQTCVAAASADE 427
R + D S+ +W+ + ++ L + HQ+ ILS D+ + ++ D
Sbjct: 226 NSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDN 285
Query: 428 TISIWN 433
T+ +WN
Sbjct: 286 TVLLWN 291
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 46 PNGRYLASGSNN-TVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICD 104
P+ Y+ + S++ T+KIWD++ K + H+S V + P P +++ G D
Sbjct: 196 PDKPYMITASDDLTIKIWDYQ---TKSCVATLEGHMSNVSFAVFHPTLPIIIS---GSED 249
Query: 105 QTVRLWNSMNGK 116
T+++WNS K
Sbjct: 250 GTLKIWNSSTYK 261
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 46 PNGRYLASGSNN-TVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICD 104
P+ Y+ + S++ T+KIWD++ K + H+S V + P P +++ G D
Sbjct: 196 PDKPYMITASDDLTIKIWDYQ---TKSCVATLEGHMSNVSFAVFHPTLPIIIS---GSED 249
Query: 105 QTVRLWNSMNGK 116
T+++WNS K
Sbjct: 250 GTLKIWNSSTYK 261
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 29/61 (47%)
Query: 373 GRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIW 432
G + G D +L +W+ + + L H +RI S + ++ +AS D TI IW
Sbjct: 278 GHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIW 337
Query: 433 N 433
+
Sbjct: 338 D 338
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 7/97 (7%)
Query: 258 VTNTCTEYIDLWHEQEERLIQKLRTHMHQVI---AMCWNGNLLSCGTIGGNILHYDVRTH 314
+T + + I LW Q +++I+ + V+ A+ +G+ +SC G I D T
Sbjct: 159 LTASADKTIKLW--QNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSN-DGLIKLVDXHTG 215
Query: 315 SDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIW 351
T E V C +K PNG ++ G + TV+IW
Sbjct: 216 DVLRTYEGHESFVYC-IKLLPNGDIVSCGEDRTVRIW 251
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 37 DVVCGLKWSPNGRYLASGSNN-TVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTL 95
D+V L +G SG + +VK+WD Q K + H S V +A CP + T+
Sbjct: 140 DIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQ---KAVLKSYNAHSSEVNCVAACPGKDTI 196
Query: 96 LATGGGICDQTVRLWNSMNGK 116
+ G D + LW++ K
Sbjct: 197 FLSCGE--DGRILLWDTRKPK 215
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 274 ERLIQKLRTH--MHQVIAMCWN--GNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVC 329
E I K+ TH + W+ G + G G I YDV + +Y +I +
Sbjct: 163 EEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSIS 222
Query: 330 GLKWSPNGRYLASGSNNT 347
+++SP+ Y + S +T
Sbjct: 223 DMQFSPDLTYFITSSRDT 240
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 377 VTSHGKQDCSLKMWEYPRLHLIEELKI-------HQERILSAVLSPD-QTCVAAASADET 428
V + G +DC++ +WE P L+ L+ H +R+ P Q + +A D
Sbjct: 96 VIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNV 155
Query: 429 ISIWNC 434
I +W+
Sbjct: 156 ILVWDV 161
>pdb|1PC3|A Chain A, Crystal Structure Of The Extracellular Phosphate Abc
Transport Receptor (Psts-1) And Immunodominant Antigen
Of M. Tuberculosis.
pdb|1PC3|B Chain B, Crystal Structure Of The Extracellular Phosphate Abc
Transport Receptor (Psts-1) And Immunodominant Antigen
Of M. Tuberculosis
Length = 350
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 47 NGRYLASGSNNTVKIWDFRQLDAKRPQVN 75
NG+ LA+ T+K WD Q+ A P VN
Sbjct: 122 NGKVLAAMYQGTIKTWDDPQIAALNPGVN 150
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 377 VTSHGKQDCSLKMWEYPRLHLIEELKI-------HQERILSAVLSPD-QTCVAAASADET 428
V + G +DC++ +WE P L+ L+ H +R+ P Q + +A D
Sbjct: 96 VIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNV 155
Query: 429 ISIWN 433
I +W+
Sbjct: 156 ILVWD 160
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 79 HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNG 115
H + V IAWCP ++A+G C TV +W +G
Sbjct: 80 HTAPVLDIAWCPHNDNVIASGSEDC--TVMVWEIPDG 114
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 53 SGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLAT 98
S + TVK+WD R + K + H V A + P + T L T
Sbjct: 223 SSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLT 268
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,371,944
Number of Sequences: 62578
Number of extensions: 649488
Number of successful extensions: 2203
Number of sequences better than 100.0: 84
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1672
Number of HSP's gapped (non-prelim): 422
length of query: 488
length of database: 14,973,337
effective HSP length: 103
effective length of query: 385
effective length of database: 8,527,803
effective search space: 3283204155
effective search space used: 3283204155
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)