RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14511
(488 letters)
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction
only].
Length = 466
Score = 104 bits (260), Expect = 4e-24
Identities = 90/432 (20%), Positives = 155/432 (35%), Gaps = 46/432 (10%)
Query: 16 NILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNN-TVKIWDFRQLDAKRPQV 74
+ V + D + + +SP+G L SGS++ T+K+WD + +
Sbjct: 45 LLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSL 104
Query: 75 NNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQQANDETIS 134
H S+V +A + + D TV+LW+ +
Sbjct: 105 EGL-HDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRT------------- 150
Query: 135 YREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAPS 194
H + K S + T+ KL KP L +
Sbjct: 151 -----------LEGHSESVTSLAFSPDGKLLASGSSLDGTI-KLWDLRTGKPLSTLAGHT 198
Query: 195 IINDFYTSGLDWGYHDTLAVA---LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKP 251
S L + L +A D ++ W+ T K + T S V+
Sbjct: 199 D----PVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGK----LLRSTLSGHSDSVVSSFS 250
Query: 252 RTTDLAVTNTCTEYIDLWH-EQEERLIQKLRTHMHQVIAMCWN--GNLLSCGTIGGNILH 308
L + + I LW L++ L H V+++ ++ G LL+ G+ G +
Sbjct: 251 PDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRL 310
Query: 309 YDVRTHSD-YPTAITREGDVVCGLKWSPNGRYLASG--SNNTVKIWDFRQLDAKRPLGLI 365
+D+ T + V L +SP+G L SG + T+++WD R + L
Sbjct: 311 WDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH 370
Query: 366 --VPKLKREGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAA 423
V + V S G D ++++W+ L+ L H R+ S SPD +A+
Sbjct: 371 SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASG 430
Query: 424 SADETISIWNCF 435
S+D TI +W+
Sbjct: 431 SSDNTIRLWDLK 442
Score = 95.9 bits (237), Expect = 3e-21
Identities = 77/359 (21%), Positives = 142/359 (39%), Gaps = 43/359 (11%)
Query: 7 LLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSN--NTVKIWDF 64
LL+ ++ G + +D+ T + + V L +SP+G+ LASGS+ T+K+WD
Sbjct: 126 LLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDL 185
Query: 65 RQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD 124
R +P H V ++A+ P L+A+G D T+RLW+ GK
Sbjct: 186 RT---GKPLSTLAGHTDPVSSLAFSPDGGLLIASGS--SDGTIRLWDLSTGKLL------ 234
Query: 125 SQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKA 184
H ++ F D + + S +R
Sbjct: 235 ------------RSTLSGHSDSVVSSFSPDGSLLA-----SGSSDGTIRLW-------DL 270
Query: 185 KPERILEAPSIINDFYTSGLDW-GYHDTLAVA-LDTSVYTWNTKTNKTQLLVEYPTYDNA 242
+ L + + + LA D +V W+ +T K + ++
Sbjct: 271 RSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGP 330
Query: 243 YISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTH-MHQVIAMCWNGNLLSCGT 301
+S +++ P + L + I LW + + ++ L H ++ +G ++S G+
Sbjct: 331 -VSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGS 389
Query: 302 IGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAK 359
G + +D+ T S + V L +SP+G+ LASGS +NT+++WD +
Sbjct: 390 TDGTVRLWDLSTGSLLRN-LDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKS 447
Score = 79.0 bits (193), Expect = 1e-15
Identities = 59/333 (17%), Positives = 117/333 (35%), Gaps = 19/333 (5%)
Query: 133 ISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEA 192
S + K + L G ++ +L+ L +
Sbjct: 5 SSTSSENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGH 64
Query: 193 PSIINDFYTSGLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPR 252
I S L+ + D ++ W+ + + +D++ P
Sbjct: 65 EDSITSIAFSPDG---ELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPD 121
Query: 253 TTDLAVTNTCTE-YIDLWHEQEE-RLIQKLRTHMHQVIAMCWNGN---LLSCGTIGGNIL 307
+ + ++ + + LW +LI+ L H V ++ ++ + L S ++ G I
Sbjct: 122 GNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIK 181
Query: 308 HYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLAS--GSNNTVKIWDFRQLDAKRPL--- 362
+D+RT T V L +SP+G L + S+ T+++WD R
Sbjct: 182 LWDLRTGKPLSTLAGHTDPVSS-LAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSG 240
Query: 363 --GLIVPKLKREGRELVTSHGKQDCSLKMWEYPRLH-LIEELKIHQERILSAVLSPDQTC 419
+V +G L + G D ++++W+ L+ L H +LS SPD
Sbjct: 241 HSDSVVSSFSPDGSLLAS--GSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKL 298
Query: 420 VAAASADETISIWNCFPRDKKRKARQVGSGSSL 452
+A+ S+D T+ +W+ G +
Sbjct: 299 LASGSSDGTVRLWDLETGKLLSSLTLKGHEGPV 331
Score = 75.1 bits (183), Expect = 2e-14
Identities = 82/394 (20%), Positives = 146/394 (37%), Gaps = 77/394 (19%)
Query: 79 HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQQANDETISYREQ 138
H ++ +IA+ P LL+ D T++LW+ NG++ ++ ++
Sbjct: 64 HEDSITSIAFSPDGELLLSGSS---DGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSP 120
Query: 139 KKRRHLSFLLHGFEIDRK-KVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAPSIIN 197
S LL +D K+ + L T GKL R ++ E +
Sbjct: 121 DGN---SILLASSSLDGTVKLWD-----------LSTPGKLIRTLEGHSESV-------- 158
Query: 198 DFYTSGLDW---GYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTT 254
+ L + G +LD ++ W+ +T K + T +S +A+ P
Sbjct: 159 ----TSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHT---DPVSSLAFSPDGG 211
Query: 255 DLAVTNTCTEYIDLWHEQEERLIQ-KLRTHMHQVI-AMCWNGNLLSCGTIGGNILHYDVR 312
L + + I LW +L++ L H V+ + +G+LL+ G+ G I +D+R
Sbjct: 212 LLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLR 271
Query: 313 THSDYPTAITREGDVVCGLKWSPNGRYLASGSN-NTVKIWDFRQLDAKRPLGLIVPKLKR 371
+ S ++ V + +SP+G+ LASGS+ TV++WD L L
Sbjct: 272 SSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLK------ 325
Query: 372 EGRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPD-QTCVAAASADETIS 430
H+ + S SPD V+ S D TI
Sbjct: 326 -------------------------------GHEGPVSSLSFSPDGSLLVSGGSDDGTIR 354
Query: 431 IWNCFPRDKKRKARQVGSGSSLEFAILKQPVSLT 464
+W+ + + S+ F+ + VS
Sbjct: 355 LWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSG 388
Score = 66.3 bits (160), Expect = 1e-11
Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 4/118 (3%)
Query: 2 CWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSN-NTVK 60
+G+LL+ G+ G I +D+R+ S ++ V + +SP+G+ LASGS+ TV+
Sbjct: 250 SPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVR 309
Query: 61 IWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEK 118
+WD + + H V ++++ P L++ G D T+RLW+ GK
Sbjct: 310 LWDLETGK-LLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSD--DGTIRLWDLRTGKPL 364
Score = 34.7 bits (78), Expect = 0.10
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 1 MCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTV 59
+G ++S G+ G + +D+ T S + V L +SP+G+ LASGS +NT+
Sbjct: 378 FSPDGRVVSSGSTDGTVRLWDLSTGSLLRN-LDGHTSRVTSLDFSPDGKSLASGSSDNTI 436
Query: 60 KIWDFRQLDAK 70
++WD +
Sbjct: 437 RLWDLKTSLKS 447
>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic
proteins that cover a wide variety of functions
including adaptor/regulatory modules in signal
transduction, pre-mRNA processing and cytoskeleton
assembly; typically contains a GH dipeptide 11-24
residues from its N-terminus and the WD dipeptide at its
C-terminus and is 40 residues long, hence the name WD40;
between GH and WD lies a conserved core; serves as a
stable propeller-like platform to which proteins can
bind either stably or reversibly; forms a propeller-like
structure with several blades where each blade is
composed of a four-stranded anti-parallel b-sheet;
instances with few detectable copies are hypothesized to
form larger structures by dimerization; each WD40
sequence repeat forms the first three strands of one
blade and the last strand in the next blade; the last
C-terminal WD40 repeat completes the blade structure of
the first WD40 repeat to create the closed ring
propeller-structure; residues on the top and bottom
surface of the propeller are proposed to coordinate
interactions with other proteins and/or small ligands; 7
copies of the repeat are present in this alignment.
Length = 289
Score = 85.1 bits (211), Expect = 2e-18
Identities = 56/236 (23%), Positives = 105/236 (44%), Gaps = 27/236 (11%)
Query: 212 LAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVT----NTCTEYID 267
+ + D ++ W+ +T + + + + Y+S VA+ P + + T
Sbjct: 67 ASGSSDKTIRLWDLETGE--CVRTLTGHTS-YVSSVAFSP-DGRILSSSSRDKTIK---- 118
Query: 268 LWHEQEERLIQKLRTHMHQV--IAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREG 325
+W + + + LR H V +A +G ++ + G I +D+RT T G
Sbjct: 119 VWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTG 178
Query: 326 DVVCGLKWSPNG-RYLASGSNNTVKIWDFRQLDAKRPLGLIVPKLKR-------EGRELV 377
+V + +SP+G + L+S S+ T+K+WD L + LG + L+
Sbjct: 179 EVNS-VAFSPDGEKLLSSSSDGTIKLWD---LSTGKCLGTLRGHENGVNSVAFSPDGYLL 234
Query: 378 TSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 433
S G +D ++++W+ ++ L H + S SPD +A+ SAD TI IW+
Sbjct: 235 AS-GSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
Score = 71.2 bits (175), Expect = 1e-13
Identities = 47/212 (22%), Positives = 81/212 (38%), Gaps = 34/212 (16%)
Query: 241 NAYISCVAWKPRTTDLAVT----NTCTEYIDLWHEQEERLIQKLRTH---MHQVIAMCWN 293
++CVA+ P L T T I +W + L++ L+ H + V A
Sbjct: 9 TGGVTCVAFSP-DGKLLATGSGDGT----IKVWDLETGELLRTLKGHTGPVRDVAASADG 63
Query: 294 GNLLSCGT--------IGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS- 344
L S + + + H+ Y V + +SP+GR L+S S
Sbjct: 64 TYLASGSSDKTIRLWDLETGECVRTLTGHTSY----------VSSVAFSPDGRILSSSSR 113
Query: 345 NNTVKIWDFRQLDAKRPLGLI---VPKLKREGRELVTSHGKQDCSLKMWEYPRLHLIEEL 401
+ T+K+WD L V + + QD ++K+W+ + L
Sbjct: 114 DKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATL 173
Query: 402 KIHQERILSAVLSPDQTCVAAASADETISIWN 433
H + S SPD + ++S+D TI +W+
Sbjct: 174 TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWD 205
Score = 62.7 bits (153), Expect = 6e-11
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 37 DVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTL 95
V + +SP+G+ LA+GS + T+K+WD + R H V+ +A L
Sbjct: 10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKG---HTGPVRDVAASADGTYL 66
Query: 96 LATGGGICDQTVRLWNSMNGKE 117
+ D+T+RLW+ G+
Sbjct: 67 ASGS---SDKTIRLWDLETGEC 85
Score = 61.2 bits (149), Expect = 2e-10
Identities = 47/172 (27%), Positives = 80/172 (46%), Gaps = 23/172 (13%)
Query: 276 LIQKLRTHMHQVIAMCWN--GNLLSCGTIGGNILHYDVRTHSDYPTAITREG--DVVCGL 331
L + L+ H V + ++ G LL+ G+ G I +D+ T T +G V +
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELL---RTLKGHTGPVRDV 57
Query: 332 KWSPNGRYLASGS-NNTVKIWDFRQLDAKRPLG---------LIVPKLKREGRELVTSHG 381
S +G YLASGS + T+++WD + R L P +++S
Sbjct: 58 AASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPD-----GRILSS-S 111
Query: 382 KQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 433
+D ++K+W+ + L+ H + + S SPD T VA++S D TI +W+
Sbjct: 112 SRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWD 163
Score = 58.5 bits (142), Expect = 2e-09
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 12/120 (10%)
Query: 3 WNGNLLSCGTIGGNILHYDVRTHSDYPTAITREG--DVVCGLKWSPNGRYLASGS-NNTV 59
+G +LS + I +DV T T G D V + +SP+G ++AS S + T+
Sbjct: 103 PDGRILSSSSRDKTIKVWDVET---GKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTI 159
Query: 60 KIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKC 119
K+WD R + H V ++A+ P LL++ D T++LW+ GK
Sbjct: 160 KLWDLRTG---KCVATLTGHTGEVNSVAFSPDGEKLLSSSS---DGTIKLWDLSTGKCLG 213
Score = 52.7 bits (127), Expect = 1e-07
Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 8/116 (6%)
Query: 4 NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNG-RYLASGSNNTVKIW 62
+G ++ + G I +D+RT T G+V + +SP+G + L+S S+ T+K+W
Sbjct: 146 DGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNS-VAFSPDGEKLLSSSSDGTIKLW 204
Query: 63 DFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEK 118
D L + + H + V ++A+ P L G D T+R+W+ G+
Sbjct: 205 D---LSTGKCLGTLRGHENGVNSVAFSPD--GYLLASGSE-DGTIRVWDLRTGECV 254
Score = 52.3 bits (126), Expect = 2e-07
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 7/74 (9%)
Query: 39 VCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLA 97
V + +SP+G LASGS + T+++WD L H ++V ++AW P + LA
Sbjct: 222 VNSVAFSPDGYLLASGSEDGTIRVWD---LRTGECVQTLSGHTNSVTSLAWSP-DGKRLA 277
Query: 98 TGGGICDQTVRLWN 111
+G D T+R+W+
Sbjct: 278 SGSA--DGTIRIWD 289
Score = 48.1 bits (115), Expect = 4e-06
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 39 VCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLA 97
V + S +G YLASGS + T+++WD + R H S V ++A+ P + +L+
Sbjct: 54 VRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLT---GHTSYVSSVAFSP-DGRILS 109
Query: 98 TGGGICDQTVRLWNSMNGKEK 118
+ D+T+++W+ GK
Sbjct: 110 SSSR--DKTIKVWDVETGKCL 128
Score = 41.9 bits (99), Expect = 4e-04
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 2 CWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVK 60
+G LL+ G+ G I +D+RT T V L WSP+G+ LASGS + T++
Sbjct: 228 SPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTS-LAWSPDGKRLASGSADGTIR 286
Query: 61 IWD 63
IWD
Sbjct: 287 IWD 289
Score = 36.9 bits (86), Expect = 0.019
Identities = 14/45 (31%), Positives = 19/45 (42%)
Query: 397 LIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKR 441
L LK H + SPD +A S D TI +W+ + R
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR 45
>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat.
Length = 39
Score = 40.4 bits (95), Expect = 4e-05
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 37 DVVCGLKWSPNGRYLASGS-NNTVKIWD 63
V + +SP+G LASGS + TV++WD
Sbjct: 12 GPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 40.4 bits (95), Expect = 4e-05
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 326 DVVCGLKWSPNGRYLASGS-NNTVKIWD 352
V + +SP+G LASGS + TV++WD
Sbjct: 12 GPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 36.2 bits (84), Expect = 0.001
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 397 LIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 433
L+ LK H + S SPD +A+ S D T+ +W+
Sbjct: 3 LLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 33.1 bits (76), Expect = 0.015
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 77 QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWN 111
+ H V ++A+ P LLA+G D TVR+W+
Sbjct: 8 KGHTGPVTSVAFSPDG-NLLASGSD--DGTVRVWD 39
>gnl|CDD|197651 smart00320, WD40, WD40 repeats. Note that these repeats are
permuted with respect to the structural repeats
(blades) of the beta propeller domain.
Length = 40
Score = 39.2 bits (92), Expect = 9e-05
Identities = 14/28 (50%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Query: 37 DVVCGLKWSPNGRYLASGS-NNTVKIWD 63
V + +SP+G+YLASGS + T+K+WD
Sbjct: 13 GPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 39.2 bits (92), Expect = 9e-05
Identities = 14/28 (50%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Query: 326 DVVCGLKWSPNGRYLASGS-NNTVKIWD 352
V + +SP+G+YLASGS + T+K+WD
Sbjct: 13 GPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 37.7 bits (88), Expect = 4e-04
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 396 HLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 433
L++ LK H + S SPD +A+ S D TI +W+
Sbjct: 3 ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 32.3 bits (74), Expect = 0.028
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 77 QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWN 111
+ H V ++A+ P LA+G D T++LW+
Sbjct: 9 KGHTGPVTSVAFSPDG-KYLASGSD--DGTIKLWD 40
>gnl|CDD|227498 COG5170, CDC55, Serine/threonine protein phosphatase 2A, regulatory
subunit [Signal transduction mechanisms].
Length = 460
Score = 37.3 bits (86), Expect = 0.016
Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 17/85 (20%)
Query: 293 NGNLLSCGTIGGNILHYDVRTHS--DYPT---AITREGDVVCGL----------KWSPNG 337
N+ + G I D+R + D +T +G V K+S NG
Sbjct: 233 MCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNG 292
Query: 338 RYLASGSNNTVKIWDFRQLDAKRPL 362
RY+ S TVKIWD AK P+
Sbjct: 293 RYILSRDYLTVKIWDVNM--AKNPI 315
Score = 36.2 bits (83), Expect = 0.033
Identities = 25/84 (29%), Positives = 33/84 (39%), Gaps = 17/84 (20%)
Query: 4 NGNLLSCGTIGGNILHYDVRTHS--DYPT---AITREGDVVCGL----------KWSPNG 48
N+ + G I D+R + D +T +G V K+S NG
Sbjct: 233 MCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNG 292
Query: 49 RYLASGSNNTVKIWDFRQLDAKRP 72
RY+ S TVKIWD AK P
Sbjct: 293 RYILSRDYLTVKIWDVNM--AKNP 314
>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional.
Length = 793
Score = 37.4 bits (86), Expect = 0.020
Identities = 29/122 (23%), Positives = 60/122 (49%), Gaps = 15/122 (12%)
Query: 326 DVVCGLKWSPNGRYLAS-GSNNTVKIWDFRQL-----DAKRPLGLIVPKLKREG------ 373
++VC + + +G + A+ G N +KI++ + D P+ + + K G
Sbjct: 484 NLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSY 543
Query: 374 -RELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSA-VLSPDQTCVAAASADETISI 431
+ V S + +++W+ R L+ E+K H++R+ S S D T +A+ S D ++ +
Sbjct: 544 IKSQVAS-SNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKL 602
Query: 432 WN 433
W+
Sbjct: 603 WS 604
>gnl|CDD|216208 pfam00941, FAD_binding_5, FAD binding domain in molybdopterin
dehydrogenase.
Length = 171
Score = 31.4 bits (72), Expect = 0.61
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 10/64 (15%)
Query: 257 AVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSD 316
AVT T + ID + L + + IA + + + TIGGNI + SD
Sbjct: 71 AVTLT--DLID--SPLVAEVFPALAEALRK-IA---SPQIRNVATIGGNIANAS--PISD 120
Query: 317 YPTA 320
P A
Sbjct: 121 LPPA 124
Score = 27.9 bits (63), Expect = 8.4
Identities = 10/22 (45%), Positives = 11/22 (50%), Gaps = 2/22 (9%)
Query: 10 CGTIGGNILHYDVRTHSDYPTA 31
TIGGNI + SD P A
Sbjct: 105 VATIGGNIANAS--PISDLPPA 124
>gnl|CDD|173651 cd05095, PTKc_DDR2, Catalytic domain of the Protein Tyrosine
Kinase, Discoidin Domain Receptor 2. Protein Tyrosine
Kinase (PTK) family; mammalian Discoidin Domain Receptor
2 (DDR2) and homologs; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. DDR2 is a
member of the DDR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular discoidin
homology domain, a transmembrane segment, an extended
juxtamembrane region, and an intracellular catalytic
domain. The binding of the ligand, collagen, to DDRs
results in a slow but sustained receptor activation.
DDR2 binds mostly to fibrillar collagens. More recently,
it has been reported to also bind collagen X. DDR2 is
widely expressed in many tissues with the highest levels
found in skeletal muscle, skin, kidney and lung. It is
important in cell proliferation and development. Mice,
with a deletion of DDR2, suffer from dwarfism and
delayed healing of epidermal wounds. DDR2 also
contributes to collagen (type I) regulation by
inhibiting fibrillogenesis and altering the morphology
of collagen fibers. It is also expressed in immature
dendritic cells (DCs), where it plays a role in DC
activation and function.
Length = 296
Score = 31.8 bits (72), Expect = 0.72
Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 23/105 (21%)
Query: 54 GSNNTVKIWDF---RQL---DAKRPQVNNQCHLSAVKAIAWCPWEPTLLA---TGGGICD 104
G N T+KI DF R L D R Q AV I W WE LL T +
Sbjct: 164 GKNYTIKIADFGMSRNLYSGDYYRIQGR------AVLPIRWMSWESILLGKFTTASDVWA 217
Query: 105 QTVRLWNSMNGKEKCHVKTDSQQANDETIS-----YREQKKRRHL 144
V LW + C + SQ ++++ I +R+Q ++ +L
Sbjct: 218 FGVTLWEILT---LCKEQPYSQLSDEQVIENTGEFFRDQGRQVYL 259
>gnl|CDD|149648 pfam08662, eIF2A, Eukaryotic translation initiation factor eIF2A.
This is a family of eukaryotic translation initiation
factors.
Length = 194
Score = 30.3 bits (69), Expect = 1.5
Identities = 30/125 (24%), Positives = 44/125 (35%), Gaps = 23/125 (18%)
Query: 244 ISCVAWKPRTTDLAVTNTCTEY----IDLWHEQEERLIQKLRTHMHQVIAMCWNGNLLSC 299
I AW P + AV Y I + + +I L I G L+
Sbjct: 62 IHDFAWSPNGKEFAV---IYGYMPAKITFFDLKGN-VIHSLGEQPRNTIFWSPFGRLVLL 117
Query: 300 GTIG---GNILHYDVRTHSDYPTAITREGD-VVCGLKWSPNGRYLASGS-------NNTV 348
G G I +DV+ A + C +WSP+GRY + + +N
Sbjct: 118 AGFGNLAGQIEFWDVKNKKKI--ATAEASNATDC--EWSPDGRYFLTATTSPRLRVDNGF 173
Query: 349 KIWDF 353
KIW +
Sbjct: 174 KIWHY 178
Score = 29.2 bits (66), Expect = 4.2
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 9/34 (26%)
Query: 38 VVCGLKWSPNGRYLASGS-------NNTVKIWDF 64
C +WSP+GRY + + +N KIW +
Sbjct: 147 TDC--EWSPDGRYFLTATTSPRLRVDNGFKIWHY 178
>gnl|CDD|180426 PRK06148, PRK06148, hypothetical protein; Provisional.
Length = 1013
Score = 30.4 bits (69), Expect = 2.8
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 204 LDWGYHDTLAVALDTSVYTWNTKTNKTQ 231
LD YH T +D S Y +N K K +
Sbjct: 712 LDHAYHGTTTELIDLSPYKFNRKGGKGR 739
>gnl|CDD|240577 cd12950, RRP7_Rrp7p, RRP7 domain ribosomal RNA-processing protein 7
(Rrp7p) and similar proteins. This CD corresponds to
the RRP7 domain of Rrp7p. Rrp7p is encoded by YCL031C
gene from Saccharomyces cerevisiae. It is an essential
yeast protein involved in pre-rRNA processing and
ribosome assembly. Rrp7p contains an N-terminal RNA
recognition motif (RRM), also termed RBD (RNA binding
domain) or RNP (ribonucleoprotein domain), and a
C-terminal RRP7 domain.
Length = 128
Score = 28.8 bits (65), Expect = 3.3
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 136 REQKKRRHLSFLLHGFEIDRKKV 158
RE+KK + LL FE D+++V
Sbjct: 100 REKKKEE-QADLLKKFEEDKERV 121
>gnl|CDD|240576 cd12932, RRP7_like, RRP7 domain ribosomal RNA-processing protein 7
(Rrp7p), ribosomal RNA-processing protein 7 homolog A
(Rrp7A), and similar proteins. This CD corresponds to
the RRP7 domain of Rrp7p and Rrp7A. Rrp7p is encoded by
YCL031C gene from Saccharomyces cerevisiae. It is an
essential yeast protein involved in pre-rRNA processing
and ribosome assembly, and is speculated to be required
for correct assembly of rpS27 into the pre-ribosomal
particle. Rrp7A, also termed gastric cancer antigen
Zg14, is the Rrp7p homolog mainly found in Metazoans.
The cellular function of Rrp7A remains unclear
currently. Both Rrp7p and Rrp7A harbor an N-terminal RNA
recognition motif (RRM), also termed RBD (RNA binding
domain) or RNP (ribonucleoprotein domain), and a
C-terminal RRP7 domain.
Length = 118
Score = 28.4 bits (64), Expect = 4.0
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Query: 135 YREQ---KKRRHLSFLLHGFEIDRKKV 158
YR Q KK+ L+ L FE D+K++
Sbjct: 92 YRFQIREKKKEELAELRKKFEEDKKRI 118
>gnl|CDD|238160 cd00257, Fascin, Fascin-like domain; members include
actin-bundling/crosslinking proteins facsin,
histoactophilin and singed; identified in sea urchin,
Drosophila, Xenopus, rodents, and humans; The
fascin-like domain adopts a beta-trefoil topology and
contains an internal threefold repeat; the fascin
subgroup contains four copies of the domain;
Structurally similar to fibroblast growth factor (FGF).
Length = 119
Score = 27.6 bits (62), Expect = 6.6
Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 13/84 (15%)
Query: 267 DLWH-EQEERLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREG 325
+ + E + LR+H +G LS + GG L + +G
Sbjct: 34 ETFTLEFDNTGKYALRSH---------DGKYLSADSDGGVQLEGHPNADCRFTLEFHGDG 84
Query: 326 DVVCGLKWSPNGRYLASGSNNTVK 349
L+ + NGRYL + T+K
Sbjct: 85 KWA--LR-AENGRYLGGDGSGTLK 105
Score = 27.2 bits (61), Expect = 8.6
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 4 NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVK 60
+G LS + GG L + +G L+ + NGRYL + T+K
Sbjct: 52 DGKYLSADSDGGVQLEGHPNADCRFTLEFHGDGKWA--LR-AENGRYLGGDGSGTLK 105
>gnl|CDD|221857 pfam12923, RRP7, Ribosomal RNA-processing protein 7 (RRP7). RRP7
is an essential protein in yeast that is involved in
pre-rRNA processing and ribosome assembly. It is
speculated to be required for correct assembly of rpS27
into the pre-ribosomal particle.
Length = 131
Score = 27.6 bits (62), Expect = 6.9
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 5/35 (14%)
Query: 135 YREQ---KKRRHLSFLLHGFEIDRKKV--LNQSKR 164
YR Q KK+ L+ L FE D+K++ L +++
Sbjct: 93 YRFQIREKKKEELAELRKKFEEDKKRIEQLKAARK 127
>gnl|CDD|233424 TIGR01466, cobJ_cbiH, precorrin-3B C17-methyltransferase. This
model represents precorrin-3B C17-methyltransferase, one
of two methyltransferases commonly referred to as
precorrin-3 methylase (the other is precorrin-4
C11-methyltransferase, EC 2.1.1.133). This enzyme
participates in the pathway toward the biosynthesis of
cobalamin and related products. Members of this family
may appear as fusion proteins with other enzymes of
cobalamin biosynthesis [Biosynthesis of cofactors,
prosthetic groups, and carriers, Heme, porphyrin, and
cobalamin].
Length = 239
Score = 28.4 bits (64), Expect = 7.9
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 6/38 (15%)
Query: 409 LSAVLSP----DQTCVAAASADETISIWNCFPRDKKRK 442
LS +L+P ++ AAA AD I+I+N PR K+R
Sbjct: 131 LSDLLTPWPEIEKRLRAAAEADFVIAIYN--PRSKRRP 166
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.133 0.422
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,312,886
Number of extensions: 2278486
Number of successful extensions: 1890
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1811
Number of HSP's successfully gapped: 42
Length of query: 488
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 387
Effective length of database: 6,457,848
Effective search space: 2499187176
Effective search space used: 2499187176
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.3 bits)