BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14512
         (113 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2RN9|A Chain A, Solution Structure Of Human Apocox17
 pdb|2RNB|A Chain A, Solution Structure Of Human Cu(I)cox17
          Length = 67

 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/23 (82%), Positives = 19/23 (82%)

Query: 32 KKLKPCCACPETKKVRDACQREK 54
          K LKPCCACPETKK RDAC  EK
Sbjct: 22 KPLKPCCACPETKKARDACIIEK 44


>pdb|2L0Y|B Chain B, Complex Hmia40-Hcox17
          Length = 67

 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 17/21 (80%), Positives = 17/21 (80%)

Query: 34 LKPCCACPETKKVRDACQREK 54
          LKPCC CPETKK RDAC  EK
Sbjct: 24 LKPCCTCPETKKARDACIIEK 44


>pdb|2LGQ|A Chain A, Human C30sC59S-Cox17 Mutant
          Length = 67

 Score = 37.7 bits (86), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 18/23 (78%), Positives = 18/23 (78%)

Query: 32 KKLKPCCACPETKKVRDACQREK 54
          K LKPCCA PETKK RDAC  EK
Sbjct: 22 KPLKPCCASPETKKARDACIIEK 44


>pdb|4GOS|A Chain A, Crystal Structure Of Human B7-H4 Igv-Like Domain
          Length = 125

 Score = 33.5 bits (75), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 31 EKKLKPCCACPETKKVRDACQREKEDRIGESQPFQE--QTLSHQDKVYPGRTLSHQDKVR 88
          E  +  C   P+ K      Q  KE  +G    F+E    LS QD+++ GRT    D+V 
Sbjct: 21 EDGILSCTFEPDIKLSDIVIQWLKEGVLGLVHEFKEGKDELSEQDEMFRGRTAVFADQVI 80

Query: 89 PGQKS 93
           G  S
Sbjct: 81 VGNAS 85


>pdb|2RDY|A Chain A, Crystal Structure Of A Putative Glycoside Hydrolase Family
           Protein From Bacillus Halodurans
 pdb|2RDY|B Chain B, Crystal Structure Of A Putative Glycoside Hydrolase Family
           Protein From Bacillus Halodurans
          Length = 803

 Score = 25.4 bits (54), Expect = 7.9,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 30/66 (45%)

Query: 44  KKVRDACQREKEDRIGESQPFQEQTLSHQDKVYPGRTLSHQDKVRPGQKSNPQPSAYKAD 103
           K + DA QR    +IG+    QE +   +D+    R +SH   + PG+    Q +    +
Sbjct: 551 KALSDAKQRLLPLQIGKRGQLQEWSNDFEDEDVHHRHVSHLVGIYPGRLITEQSAPNLFE 610

Query: 104 ALPTKL 109
           A  T L
Sbjct: 611 AAKTSL 616


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.128    0.379 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,786,157
Number of Sequences: 62578
Number of extensions: 96649
Number of successful extensions: 103
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 96
Number of HSP's gapped (non-prelim): 7
length of query: 113
length of database: 14,973,337
effective HSP length: 77
effective length of query: 36
effective length of database: 10,154,831
effective search space: 365573916
effective search space used: 365573916
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)