BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14512
         (113 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6J3Q7|COX17_CANFA Cytochrome c oxidase copper chaperone OS=Canis familiaris
          GN=COX17 PE=3 SV=3
          Length = 63

 Score = 40.4 bits (93), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/29 (72%), Positives = 22/29 (75%), Gaps = 1/29 (3%)

Query: 32 KKLKPCCACPETKKVRDACQREK-EDRIG 59
          K LKPCCACPETKK RDAC  EK E+  G
Sbjct: 18 KPLKPCCACPETKKARDACIIEKGEEHCG 46


>sp|P81045|COX17_PIG Cytochrome c oxidase copper chaperone OS=Sus scrofa GN=COX17 PE=1
          SV=1
          Length = 62

 Score = 40.4 bits (93), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/29 (72%), Positives = 22/29 (75%), Gaps = 1/29 (3%)

Query: 32 KKLKPCCACPETKKVRDACQREK-EDRIG 59
          K LKPCCACPETKK RDAC  EK E+  G
Sbjct: 17 KPLKPCCACPETKKARDACIIEKGEEHCG 45


>sp|Q14061|COX17_HUMAN Cytochrome c oxidase copper chaperone OS=Homo sapiens GN=COX17
          PE=1 SV=2
          Length = 63

 Score = 40.4 bits (93), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/29 (72%), Positives = 22/29 (75%), Gaps = 1/29 (3%)

Query: 32 KKLKPCCACPETKKVRDACQREK-EDRIG 59
          K LKPCCACPETKK RDAC  EK E+  G
Sbjct: 18 KPLKPCCACPETKKARDACIIEKGEEHCG 46


>sp|Q9P7Z7|COX17_SCHPO Cytochrome c oxidase copper chaperone OS=Schizosaccharomyces
          pombe (strain 972 / ATCC 24843) GN=cox17 PE=3 SV=1
          Length = 70

 Score = 39.7 bits (91), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 12 SSSPLPIEAPKGAESA-VNPEKKLKPCCACPETKKVRDACQREKED 56
          SSS  P  A K +E A +  E+K KPCCACPETK+ RDAC  +  +
Sbjct: 2  SSSTEPSTATKVSEPAPIASEEKPKPCCACPETKQARDACMLQSSN 47


>sp|P56394|COX17_MOUSE Cytochrome c oxidase copper chaperone OS=Mus musculus GN=Cox17
          PE=3 SV=2
          Length = 63

 Score = 39.7 bits (91), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 21/29 (72%), Positives = 22/29 (75%), Gaps = 1/29 (3%)

Query: 32 KKLKPCCACPETKKVRDACQREK-EDRIG 59
          K LKPCCACPETKK RDAC  EK E+  G
Sbjct: 18 KPLKPCCACPETKKARDACIIEKGEEHCG 46


>sp|Q54ID0|COX17_DICDI Cytochrome c oxidase copper chaperone OS=Dictyostelium discoideum
          GN=cox17 PE=3 SV=1
          Length = 60

 Score = 34.3 bits (77), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 16/21 (76%), Positives = 18/21 (85%), Gaps = 2/21 (9%)

Query: 30 PEKKLKPCCACPETKKVRDAC 50
          P+KK+  CCACPETKKVRD C
Sbjct: 15 PKKKM--CCACPETKKVRDEC 33


>sp|P0C2F5|Y1657_ARATH Uncharacterized protein At1g65760 OS=Arabidopsis thaliana
          GN=At1g65760 PE=2 SV=1
          Length = 362

 Score = 30.0 bits (66), Expect = 4.7,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 42 ETKKVRDACQ--REKEDRIGESQPFQEQTLSHQDKVYPGRTLSHQDKV--RPG 90
          E K+ R  C+  R     +  + PF  +   H D + P  TLS  D    RPG
Sbjct: 26 ELKRFRSICRSWRSSTSGVNRNNPFPSRPRIHFDPIDPSETLSSDDSYISRPG 78


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.309    0.124    0.361 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,876,714
Number of Sequences: 539616
Number of extensions: 1726597
Number of successful extensions: 4321
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 4284
Number of HSP's gapped (non-prelim): 80
length of query: 113
length of database: 191,569,459
effective HSP length: 81
effective length of query: 32
effective length of database: 147,860,563
effective search space: 4731538016
effective search space used: 4731538016
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)