Query psy14512
Match_columns 113
No_of_seqs 106 out of 153
Neff 2.2
Searched_HMMs 46136
Date Fri Aug 16 21:48:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14512.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14512hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3496|consensus 99.8 2.5E-21 5.4E-26 133.3 2.2 52 19-72 14-65 (72)
2 PF05051 COX17: Cytochrome C o 99.8 3.3E-21 7.1E-26 124.2 1.6 41 30-72 2-42 (49)
3 PF06747 CHCH: CHCH domain; I 91.0 0.12 2.7E-06 29.0 1.1 32 42-73 3-34 (35)
4 PF08991 DUF1903: Domain of un 86.0 0.68 1.5E-05 31.1 2.2 32 48-79 12-43 (67)
5 PLN03079 Uncharacterized prote 61.0 3.9 8.4E-05 29.5 0.8 44 40-83 18-69 (91)
6 PF05254 UPF0203: Uncharacteri 52.9 5.9 0.00013 26.6 0.5 43 39-81 8-58 (68)
7 PF10249 NDUFB10: NADH-ubiquin 47.0 12 0.00027 28.1 1.5 27 46-72 69-96 (128)
8 KOG4009|consensus 41.5 14 0.0003 29.1 1.1 24 48-71 87-111 (156)
9 PF07956 DUF1690: Protein of U 31.0 41 0.00089 25.1 2.1 24 48-71 117-140 (142)
10 PF08583 Cmc1: Cytochrome c ox 29.8 26 0.00056 21.6 0.8 16 59-74 11-26 (69)
11 KOG0957|consensus 27.0 37 0.00081 31.8 1.6 11 34-44 119-129 (707)
12 KOG4618|consensus 26.3 17 0.00037 25.6 -0.6 35 40-74 24-58 (74)
13 KOG3481|consensus 23.8 42 0.00091 24.3 1.1 43 39-81 12-62 (87)
14 PF08036 Antimicrobial_6: Diap 22.4 44 0.00095 21.1 0.8 18 39-56 9-26 (39)
15 COG3111 Periplasmic protein wi 21.1 40 0.00086 25.8 0.5 19 71-89 88-106 (128)
No 1
>KOG3496|consensus
Probab=99.82 E-value=2.5e-21 Score=133.28 Aligned_cols=52 Identities=38% Similarity=0.677 Sum_probs=45.2
Q ss_pred CCCCCCCCCCCCCCCCCCcccCCccccccchhhhhccCCcCCCHHHHHHHhhcc
Q psy14512 19 EAPKGAESAVNPEKKLKPCCACPETKKVRDACQREKEDRIGESQPFQEQTLSHQ 72 (113)
Q Consensus 19 ~~p~~a~~~~~~~~k~KPCCaCpetKkaRDeCil~~GeE~c~Ck~lIEayksc~ 72 (113)
..++.......+++|+||||||||||++||.|||+||+| +|..|||+|+.|-
T Consensus 14 ~~~~~~~~a~eek~K~KpCCaCpetK~~RDaCIle~gee--~C~~lIEahk~CM 65 (72)
T KOG3496|consen 14 DKPAPQANAAEEKPKPKPCCACPETKKARDACILENGEE--KCGKLIEAHKECM 65 (72)
T ss_pred CCCccccccccccCCCCccccCCchhhhhhhHhhhcCHH--HHHHHHHHHHHHH
Confidence 344455555668889999999999999999999999999 7999999999995
No 2
>PF05051 COX17: Cytochrome C oxidase copper chaperone (COX17); InterPro: IPR007745 Cox17p is essential for the assembly of functional cytochrome c oxidase (CCO) and for delivery of copper ions to the mitochondrion for insertion into the enzyme in Saccharomyces cerevisiae [].; GO: 0005507 copper ion binding, 0016531 copper chaperone activity, 0006825 copper ion transport, 0005758 mitochondrial intermembrane space; PDB: 1U97_A 1U96_A 1Z2G_A 2RNB_A 2RN9_A 2LGQ_A 2L0Y_B.
Probab=99.81 E-value=3.3e-21 Score=124.24 Aligned_cols=41 Identities=39% Similarity=0.669 Sum_probs=33.7
Q ss_pred CCCCCCCcccCCccccccchhhhhccCCcCCCHHHHHHHhhcc
Q psy14512 30 PEKKLKPCCACPETKKVRDACQREKEDRIGESQPFQEQTLSHQ 72 (113)
Q Consensus 30 ~~~k~KPCCaCpetKkaRDeCil~~GeE~c~Ck~lIEayksc~ 72 (113)
+++++||||||||||++||+|||+||+|+ |++|||+|++|-
T Consensus 2 ~kP~~KpCCaCpetK~aRDeC~l~~g~e~--C~~~Ieahk~Cm 42 (49)
T PF05051_consen 2 EKPKKKPCCACPETKKARDECILFNGEED--CKELIEAHKACM 42 (49)
T ss_dssp SS----TTTTSHHHHHHHHHHHHHC-CCC--CHHHHHHHHHHH
T ss_pred CCCCCCcCccChhHHHHhHhhHHhcChHH--HHHHHHHHHHHH
Confidence 34558999999999999999999999995 999999999995
No 3
>PF06747 CHCH: CHCH domain; InterPro: IPR010625 A conserved motif was identified in the LOC118487 protein was called the CHCH motif. Alignment of this protein with related members showed the presence of three subgroups of proteins, which are called the S (Small), N (N-terminal extended) and C (C-terminal extended) subgroups. All three sub-groups of proteins have in common that they contain a predicted conserved [coiled coil 1]-[helix 1]-[coiled coil 2]-[helix 2] domain (CHCH domain). Within each helix of the CHCH domain, there are two cysteines present in a C-X9-C motif. The N-group contains an additional double helix domain, and each helix contains the C-X9-C motif. This family contains a number of characterised proteins: Cox19 protein - a nuclear gene of Saccharomyces cerevisiae, codes for an 11 kDa protein (Cox19p) required for expression of cytochrome oxidase. Because cox19 mutants are able to synthesise the mitochondrial and nuclear gene products of cytochrome oxidase, Cox19p probably functions post-translationally during assembly of the enzyme. Cox19p is present in the cytoplasm and mitochondria, where it exists as a soluble intermembrane protein. This dual location is similar to what was previously reported for Cox17p, a low molecular weight copper protein thought to be required for maturation of the CuA centre of subunit 2 of cytochrome oxidase. Cox19p have four conserved potential metal ligands, these are three cysteines and one histidine. Mrp10 - belongs to the class of yeast mitochondrial ribosomal proteins that are essential for translation []. Eukaryotic NADH-ubiquinone oxidoreductase 19 kDa (NDUFA8) subunit []. The CHCH domain was previously called DUF657 []. ; PDB: 2ZXT_A 3A3C_A 2L0Y_A 2K3J_A.
Probab=90.99 E-value=0.12 Score=28.96 Aligned_cols=32 Identities=16% Similarity=0.042 Sum_probs=24.5
Q ss_pred ccccccchhhhhccCCcCCCHHHHHHHhhccC
Q psy14512 42 ETKKVRDACQREKEDRIGESQPFQEQTLSHQD 73 (113)
Q Consensus 42 etKkaRDeCil~~GeE~c~Ck~lIEayksc~~ 73 (113)
++.++==+|+-.|+.+..+|++++++|+.|.-
T Consensus 3 ~e~~~~~~Cl~~n~~~~~~C~~~~~~~~~C~~ 34 (35)
T PF06747_consen 3 EEMKAYLACLKENNFDWSKCRKEFKAYKECRM 34 (35)
T ss_dssp HHHHHHHHHHHCH-SSTCCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCcHHhhHHHHHHHHHHhh
Confidence 33344447899999888899999999999964
No 4
>PF08991 DUF1903: Domain of unknown function (DUF1903); InterPro: IPR009069 The mature-T-cell-proliferation (MTCP1) putative oncogene was identified for its involvement in t(X:14)(q28;q11)-associated T-cell leukaemia []. MTCP1 is alternatively spliced to produce two completely distinct proteins: the small mitochondrial protein, p8MTCP1, and the protein p13MTCP1, which shows strong homology to another oncogene product, p14TCL1. While p13MTCP1 expression appears to be restricted to mature T-cell proliferation with t(X,14) translocations, the mitochondrial p8MTCP1 is expressed at low levels in most human tissues, and is over-expressed in the proliferating T-cells. The biological function of p8MTCP1 is still unknown, but it appears to play a role in oncogenesis. The structure of p8MTCP1 reveals a disulphide-rich, irregular array of three helices [].; PDB: 2HP8_A 1EI0_A 1HP8_A.
Probab=85.96 E-value=0.68 Score=31.07 Aligned_cols=32 Identities=16% Similarity=0.289 Sum_probs=24.2
Q ss_pred chhhhhccCCcCCCHHHHHHHhhccCcccCCC
Q psy14512 48 DACQREKEDRIGESQPFQEQTLSHQDKVYPGR 79 (113)
Q Consensus 48 DeCil~~GeE~c~Ck~lIEayksc~~~~~~~~ 79 (113)
-.|+-.|+-+...|.++|++|+.|-...|--+
T Consensus 12 q~CL~~N~Yd~~kC~~~i~~l~~Cck~~y~~~ 43 (67)
T PF08991_consen 12 QKCLQRNNYDESKCQDYIDALYECCKKFYEQR 43 (67)
T ss_dssp HHHHHHTTT-CCCTHHHHHHHHHHHTTS----
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHcc
Confidence 46888888777799999999999999887543
No 5
>PLN03079 Uncharacterized protein At4g33100; Provisional
Probab=61.00 E-value=3.9 Score=29.55 Aligned_cols=44 Identities=14% Similarity=0.152 Sum_probs=35.6
Q ss_pred CCccccccchhhh-------hccCCc-CCCHHHHHHHhhccCcccCCCcccc
Q psy14512 40 CPETKKVRDACQR-------EKEDRI-GESQPFQEQTLSHQDKVYPGRTLSH 83 (113)
Q Consensus 40 CpetKkaRDeCil-------~~GeE~-c~Ck~lIEayksc~~~~~~~~~~~~ 83 (113)
|.+.|+.=|.|+. .+|.-. .+|.++.+.|+.|-.+-.-.+-|.+
T Consensus 18 CtelK~~YD~CFN~WYsEkFLKG~~~~~eC~~~w~~Yq~Cv~~aL~ek~I~~ 69 (91)
T PLN03079 18 CAELRTAYHNCFNRWYSEKFVKGQWDKEDCVAEWHKYRACLSEHLEDKHLSQ 69 (91)
T ss_pred cHHHHHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHcChHH
Confidence 9999999999996 345443 3899999999999988776666655
No 6
>PF05254 UPF0203: Uncharacterised protein family (UPF0203); InterPro: IPR007918 This is a family of small highly conserved proteins. In Saccharomyces cerevisiae (Baker's yeast) the gene YKL053C-A (MDM35) O60200 from SWISSPROT is one of the genes essential for maintenance of normal mitochondrial distribution and morphology (MDM) []; wherease in Homo sapiens (Human), p53CSV, O43715 from SWISSPROT is a direct transcriptional target for p53 and appears to be a cell-survival mediator in response to genotoxic stress including low-levels of DNA damage. It is suggested that p53CSV modulates the apoptotic pathway through interaction with HSP70 and Apaf-1 thereby inhibiting activation of procaspase-3 and procaspase-9 [].
Probab=52.89 E-value=5.9 Score=26.57 Aligned_cols=43 Identities=21% Similarity=0.285 Sum_probs=32.4
Q ss_pred cCCccccccchhhh-------hccCCcC-CCHHHHHHHhhccCcccCCCcc
Q psy14512 39 ACPETKKVRDACQR-------EKEDRIG-ESQPFQEQTLSHQDKVYPGRTL 81 (113)
Q Consensus 39 aCpetKkaRDeCil-------~~GeE~c-~Ck~lIEayksc~~~~~~~~~~ 81 (113)
.|.+-|..=|.|+. ..|+... .|.++-++|+.|-.+..-.+-|
T Consensus 8 eC~~lK~~YD~CFn~WfsekfLkG~~~~~~C~~~~~~Y~~Cv~~al~~k~i 58 (68)
T PF05254_consen 8 ECTELKEKYDQCFNKWFSEKFLKGDSSDNECGELFKEYQQCVQKALKEKGI 58 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHHHHHcCc
Confidence 48889999999986 2465554 8999999999998765444433
No 7
>PF10249 NDUFB10: NADH-ubiquinone oxidoreductase subunit 10; InterPro: IPR019377 NADH-ubiquinone oxidoreductase subunit 10 of (NDUFB10) is a member of a family of conserved proteins of up to 180 residues. It is one of the 41 protein subunits within the hydrophobic fraction of the NADH:ubiquinone oxidoreductase (complex I), a multiprotein complex located in the inner mitochondrial membrane whose main function is the transport of electrons from NADH to ubiquinone, which is accompanied by translocation of protons from the mitochondrial matrix to the intermembrane space. NDUFB10 is encoded in the nucleus.
Probab=46.95 E-value=12 Score=28.08 Aligned_cols=27 Identities=19% Similarity=0.170 Sum_probs=22.6
Q ss_pred ccchhhhhccCCc-CCCHHHHHHHhhcc
Q psy14512 46 VRDACQREKEDRI-GESQPFQEQTLSHQ 72 (113)
Q Consensus 46 aRDeCil~~GeE~-c~Ck~lIEayksc~ 72 (113)
.-+.|....|.++ -+|++++++|..-.
T Consensus 69 Rl~~C~~~EG~nh~qnC~~l~~qy~ea~ 96 (128)
T PF10249_consen 69 RLEACYRREGVNHYQNCRKLVEQYEEAA 96 (128)
T ss_pred HHHHHHHHHCcCHhhhhHHHHHHHHHHH
Confidence 3468999999888 49999999998754
No 8
>KOG4009|consensus
Probab=41.53 E-value=14 Score=29.09 Aligned_cols=24 Identities=13% Similarity=0.039 Sum_probs=20.9
Q ss_pred chhhhhccCCc-CCCHHHHHHHhhc
Q psy14512 48 DACQREKEDRI-GESQPFQEQTLSH 71 (113)
Q Consensus 48 DeCil~~GeE~-c~Ck~lIEayksc 71 (113)
+.|++.+|.++ -+|..+||+|..-
T Consensus 87 k~C~lye~pnh~q~C~k~veq~e~~ 111 (156)
T KOG4009|consen 87 KWCYLYEGPNHYQKCRKLVEQYEDA 111 (156)
T ss_pred HHHHHHhCcchHhHHHHHHHHHHHH
Confidence 57999999888 4999999999764
No 9
>PF07956 DUF1690: Protein of Unknown function (DUF1690) ; InterPro: IPR012471 Family of uncharacterised fungal proteins.
Probab=31.00 E-value=41 Score=25.08 Aligned_cols=24 Identities=21% Similarity=0.113 Sum_probs=20.9
Q ss_pred chhhhhccCCcCCCHHHHHHHhhc
Q psy14512 48 DACQREKEDRIGESQPFQEQTLSH 71 (113)
Q Consensus 48 DeCil~~GeE~c~Ck~lIEayksc 71 (113)
=.|+..|....=+|-+.||+||.|
T Consensus 117 v~CL~~N~~rPLnCw~EVe~FKk~ 140 (142)
T PF07956_consen 117 VRCLRENDGRPLNCWEEVEAFKKE 140 (142)
T ss_pred HHHHHHCCCCCCchHHHHHHHHHH
Confidence 369999888777999999999986
No 10
>PF08583 Cmc1: Cytochrome c oxidase biogenesis protein Cmc1 like; InterPro: IPR013892 Cmc1 is a metallo-chaperone like protein which is known to localise to the inner mitochondrial membrane in Saccharomyces cerevisiae. It is essential for full expression of cytochrome c oxidase and respiration []. Cmc1 contains two Cx9C motifs and is able to bind copper(I). Cmc1 is thought to play a role in mitochondrial copper trafficking and transfer to cytochrome c oxidase.
Probab=29.79 E-value=26 Score=21.63 Aligned_cols=16 Identities=6% Similarity=-0.110 Sum_probs=14.4
Q ss_pred CCCHHHHHHHhhccCc
Q psy14512 59 GESQPFQEQTLSHQDK 74 (113)
Q Consensus 59 c~Ck~lIEayksc~~~ 74 (113)
..|.++|++|..|...
T Consensus 11 ~~C~~~i~~~~~C~~~ 26 (69)
T PF08583_consen 11 KKCADEIEAFAECHKD 26 (69)
T ss_pred HHhHHHHHHHHHHHhc
Confidence 3799999999999987
No 11
>KOG0957|consensus
Probab=26.96 E-value=37 Score=31.80 Aligned_cols=11 Identities=27% Similarity=0.869 Sum_probs=8.8
Q ss_pred CCCcccCCccc
Q psy14512 34 LKPCCACPETK 44 (113)
Q Consensus 34 ~KPCCaCpetK 44 (113)
--+||||.-.+
T Consensus 119 ~~iCcVClg~r 129 (707)
T KOG0957|consen 119 AVICCVCLGQR 129 (707)
T ss_pred ceEEEEeecCc
Confidence 34999998776
No 12
>KOG4618|consensus
Probab=26.27 E-value=17 Score=25.63 Aligned_cols=35 Identities=11% Similarity=0.122 Sum_probs=29.2
Q ss_pred CCccccccchhhhhccCCcCCCHHHHHHHhhccCc
Q psy14512 40 CPETKKVRDACQREKEDRIGESQPFQEQTLSHQDK 74 (113)
Q Consensus 40 CpetKkaRDeCil~~GeE~c~Ck~lIEayksc~~~ 74 (113)
|-.+-.+-=.|+=+|+-+..+|+...+.|+.|-..
T Consensus 24 Cl~es~aSfkCLeennyDRsKCq~yFd~YkeCKkf 58 (74)
T KOG4618|consen 24 CLLESSASFKCLEENNYDRSKCQDYFDVYKECKKF 58 (74)
T ss_pred HHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHH
Confidence 56677777789989998888999999999999654
No 13
>KOG3481|consensus
Probab=23.85 E-value=42 Score=24.26 Aligned_cols=43 Identities=19% Similarity=0.281 Sum_probs=32.3
Q ss_pred cCCccccccchhhh-------hccCCcC-CCHHHHHHHhhccCcccCCCcc
Q psy14512 39 ACPETKKVRDACQR-------EKEDRIG-ESQPFQEQTLSHQDKVYPGRTL 81 (113)
Q Consensus 39 aCpetKkaRDeCil-------~~GeE~c-~Ck~lIEayksc~~~~~~~~~~ 81 (113)
.|-+-|+.=|.|+- .+|.-+. .|..+-..|++|-.+-.-+..+
T Consensus 12 eCt~lk~~YD~CFn~Wf~eKflKG~~~~~pC~~l~k~Y~~Cv~kal~tk~i 62 (87)
T KOG3481|consen 12 ECTDLKQKYDQCFNEWFSEKFLKGDSSGEPCSRLFKVYKQCVQKALKTKRI 62 (87)
T ss_pred cchHHHHHHHHHHHHHHHHHhcCCccccCcHHHHHHHHHHHHHHHHhhcCC
Confidence 47888999999974 3454433 7999999999998876644443
No 14
>PF08036 Antimicrobial_6: Diapausin family of antimicrobial peptide; InterPro: IPR012525 This family consists of diapausin-related antimicrobial peptides. Diapause during periods of environmental adversity is an essential part of the life cycle of many organisms with the molecular basis being different among animals. Diapause-specific peptides provide anti-fungal activity and act as N-type voltage-gated calcium channel blocker [].; GO: 0050832 defense response to fungus, 0005576 extracellular region; PDB: 2E2F_A.
Probab=22.44 E-value=44 Score=21.13 Aligned_cols=18 Identities=28% Similarity=0.516 Sum_probs=14.6
Q ss_pred cCCccccccchhhhhccC
Q psy14512 39 ACPETKKVRDACQREKED 56 (113)
Q Consensus 39 aCpetKkaRDeCil~~Ge 56 (113)
||+-+-..||||---||-
T Consensus 9 vC~R~~~Er~eCCrAhG~ 26 (39)
T PF08036_consen 9 VCSRIVPERDECCRAHGY 26 (39)
T ss_dssp STTS-STTTHHHHHHTT-
T ss_pred cccCcchhHHHHHHHcCc
Confidence 799999999999988773
No 15
>COG3111 Periplasmic protein with OB-fold [Function unknown]
Probab=21.07 E-value=40 Score=25.80 Aligned_cols=19 Identities=47% Similarity=0.718 Sum_probs=16.5
Q ss_pred ccCcccCCCccccccccCC
Q psy14512 71 HQDKVYPGRTLSHQDKVRP 89 (113)
Q Consensus 71 c~~~~~~~~~~~~~~~~~~ 89 (113)
-.|+++.|+|++-+|+|+-
T Consensus 88 Idd~~w~g~tv~P~dkV~I 106 (128)
T COG3111 88 IDDKVWNGQTVTPKDKVRI 106 (128)
T ss_pred ecccccCCcccCcccEEEE
Confidence 3579999999999999974
Done!