Query psy14512
Match_columns 113
No_of_seqs 106 out of 153
Neff 2.2
Searched_HMMs 29240
Date Fri Aug 16 21:48:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14512.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14512hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1u96_A Cytochrome C oxidase co 99.8 5.6E-22 1.9E-26 134.3 3.7 45 29-73 15-59 (69)
2 2l0y_B HCG2020266, COX17 cytoc 99.8 1.1E-21 3.7E-26 132.4 -0.6 43 28-72 18-60 (67)
3 1hp8_A HU-P8; leukemia, cystei 88.6 0.042 1.4E-06 36.5 -1.5 42 40-81 7-48 (68)
4 1ei0_A P8MTCP1; helix-turn-hel 82.8 0.38 1.3E-05 28.2 0.9 34 40-73 3-36 (38)
5 2lqt_A Coiled-coil-helix-coile 81.5 0.53 1.8E-05 32.5 1.3 36 40-75 16-51 (85)
6 3lk2_T Carmil homolog, leucine 51.2 9.5 0.00032 24.4 2.2 23 77-99 18-40 (52)
7 3aae_X 32MER peptide from leuc 39.0 21 0.0007 21.5 2.2 21 77-97 17-37 (37)
8 2lql_A Coiled-coil-helix-coile 24.9 15 0.0005 25.5 -0.1 39 39-77 60-98 (113)
9 2kz7_C Carmil homolog, leucine 21.1 61 0.0021 22.3 2.4 22 78-99 27-48 (85)
10 3dex_A SAV_2001; alpha-beta pr 19.8 21 0.00073 24.9 -0.1 26 60-88 76-101 (107)
No 1
>1u96_A Cytochrome C oxidase copper chaperone; metallochaperone, unstructured N-terminus, two alpha- helices; NMR {Saccharomyces cerevisiae} SCOP: a.17.1.2 PDB: 1u97_A 1z2g_A
Probab=99.84 E-value=5.6e-22 Score=134.25 Aligned_cols=45 Identities=29% Similarity=0.504 Sum_probs=41.8
Q ss_pred CCCCCCCCcccCCccccccchhhhhccCCcCCCHHHHHHHhhccC
Q psy14512 29 NPEKKLKPCCACPETKKVRDACQREKEDRIGESQPFQEQTLSHQD 73 (113)
Q Consensus 29 ~~~~k~KPCCaCpetKkaRDeCil~~GeE~c~Ck~lIEayksc~~ 73 (113)
..++++||||||||||++||+|||++|+++.+|++|||+|+.|-.
T Consensus 15 ~~~~k~KpCCaCpetK~aRDeCil~~gee~~~C~~lIeahk~CMr 59 (69)
T 1u96_A 15 ECEDKPKPCCVCKPEKEERDTCILFNGQDSEKCKEFIEKYKECMK 59 (69)
T ss_dssp SCCCCCCCCTTSSHHHHHHHHHHHHSCSCSGGGHHHHHHHHHHHH
T ss_pred cCCCCCCcCeeCcchhhHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 467789999999999999999999999998899999999999964
No 2
>2l0y_B HCG2020266, COX17 cytochrome C oxidase assembly homolog (S. C pseudogene (COX17); oxidative protein folding, macromolecular complex; NMR {Homo sapiens} PDB: 2lgq_A 2rn9_A 2rnb_A
Probab=99.81 E-value=1.1e-21 Score=132.38 Aligned_cols=43 Identities=42% Similarity=0.769 Sum_probs=13.0
Q ss_pred CCCCCCCCCcccCCccccccchhhhhccCCcCCCHHHHHHHhhcc
Q psy14512 28 VNPEKKLKPCCACPETKKVRDACQREKEDRIGESQPFQEQTLSHQ 72 (113)
Q Consensus 28 ~~~~~k~KPCCaCpetKkaRDeCil~~GeE~c~Ck~lIEayksc~ 72 (113)
.++++++||||||||||++||+|||++|+| +|++|||+|+.|-
T Consensus 18 ~~~~k~~KpCCaCpetK~aRDeCil~~gee--~C~~lIeahk~Cm 60 (67)
T 2l0y_B 18 SQEKRPLKPCCTCPETKKARDACIIEKGEE--HCGHLIEAHKESM 60 (67)
T ss_dssp -----------------------------C--CSCSSHHHHHHHH
T ss_pred ccCCCCCCcCeeCcchhhHhHHHHHhcCHH--HHHHHHHHHHHHH
Confidence 345666899999999999999999999999 7999999999995
No 3
>1hp8_A HU-P8; leukemia, cysteine motif; NMR {Homo sapiens} SCOP: a.17.1.1 PDB: 2hp8_A
Probab=88.64 E-value=0.042 Score=36.50 Aligned_cols=42 Identities=12% Similarity=0.168 Sum_probs=34.3
Q ss_pred CCccccccchhhhhccCCcCCCHHHHHHHhhccCcccCCCcc
Q psy14512 40 CPETKKVRDACQREKEDRIGESQPFQEQTLSHQDKVYPGRTL 81 (113)
Q Consensus 40 CpetKkaRDeCil~~GeE~c~Ck~lIEayksc~~~~~~~~~~ 81 (113)
|...-.+=-.|+-.||-+..+|+.+|++|+.|..+.|-+|++
T Consensus 7 C~~~AcaiQ~CL~~N~yd~skCq~~id~L~eCc~~~~~~~S~ 48 (68)
T 1hp8_A 7 CQKQACEIQKCLQANSYMESKCQAVIQELRKCCAQYPKGRSV 48 (68)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTSCGGGCH
T ss_pred hHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHccCCCC
Confidence 444445556799999987789999999999999999977765
No 4
>1ei0_A P8MTCP1; helix-turn-helix, disulfide bridges, cell cycle; NMR {Synthetic} SCOP: j.77.1.1
Probab=82.80 E-value=0.38 Score=28.19 Aligned_cols=34 Identities=9% Similarity=0.137 Sum_probs=26.1
Q ss_pred CCccccccchhhhhccCCcCCCHHHHHHHhhccC
Q psy14512 40 CPETKKVRDACQREKEDRIGESQPFQEQTLSHQD 73 (113)
Q Consensus 40 CpetKkaRDeCil~~GeE~c~Ck~lIEayksc~~ 73 (113)
|...-.+=-+|+-.||-+..+|+.+|++++.|-.
T Consensus 3 C~~~a~a~q~CL~~n~~d~skCq~~id~l~~Cc~ 36 (38)
T 1ei0_A 3 CQKQAAEIQKCLQANSYLESKCQAVIQELKKCAA 36 (38)
T ss_dssp SHHHHHHHHHHHHHTTTCGGGTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHh
Confidence 3334444457999999888899999999999854
No 5
>2lqt_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 7; CHCH domain, mitochondrial import, alpha-hairpin, MIA40-DEPE disulfide relay system; NMR {Homo sapiens}
Probab=81.53 E-value=0.53 Score=32.52 Aligned_cols=36 Identities=8% Similarity=0.101 Sum_probs=29.6
Q ss_pred CCccccccchhhhhccCCcCCCHHHHHHHhhccCcc
Q psy14512 40 CPETKKVRDACQREKEDRIGESQPFQEQTLSHQDKV 75 (113)
Q Consensus 40 CpetKkaRDeCil~~GeE~c~Ck~lIEayksc~~~~ 75 (113)
|-++.++==.|+-.|+.+...|..+.++|+.|....
T Consensus 16 C~~e~~~S~kCL~~n~yDr~~C~~yF~~Yk~CKk~W 51 (85)
T 2lqt_A 16 CLSESDASTRCLDENNYDRERCSTYFLRYKNCRRFW 51 (85)
T ss_dssp CHHHHHHHHHHHHHTTTCTTTTHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHH
Confidence 556666666899999988889999999999996543
No 6
>3lk2_T Carmil homolog, leucine-rich repeat-containing protein 16A; CAPZ, actin filaments, uncapping, actin-filament REG protein-protein complex; 2.20A {Gallus gallus}
Probab=51.24 E-value=9.5 Score=24.41 Aligned_cols=23 Identities=35% Similarity=0.686 Sum_probs=19.2
Q ss_pred CCCccccccccCCCCCCCCCCcc
Q psy14512 77 PGRTLSHQDKVRPGQKSNPQPSA 99 (113)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~ 99 (113)
-|.+|-|+-|.||-....-+|+-
T Consensus 18 eg~kLeH~TK~RPk~~kk~~Ps~ 40 (52)
T 3lk2_T 18 EGKKLEHFTKLRPKRNKKQQPTQ 40 (52)
T ss_dssp SCSCCCCGGGGSCCCCCSSCCSC
T ss_pred HHhhHHhhhccCCCcccccCCCC
Confidence 38999999999999887777764
No 7
>3aae_X 32MER peptide from leucine-rich repeat-containing 16A; actin capping protein, barbed END regulation, carmil family conformational change; 3.30A {Mus musculus}
Probab=39.04 E-value=21 Score=21.46 Aligned_cols=21 Identities=43% Similarity=0.757 Sum_probs=17.5
Q ss_pred CCCccccccccCCCCCCCCCC
Q psy14512 77 PGRTLSHQDKVRPGQKSNPQP 97 (113)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~ 97 (113)
-||.|.|-.|+||-.+...||
T Consensus 17 eg~klehftklrpkr~kkqqp 37 (37)
T 3aae_X 17 EGRRLEHFTKLRPKRNKKQQP 37 (37)
T ss_dssp CCSCCCCTTTTSCCCCCSSCC
T ss_pred hhhHHHHHHhhCcccccccCC
Confidence 489999999999987766665
No 8
>2lql_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 5; CHCH domain, mitochondrial import, MIA40-dependent disulfide system; NMR {Homo sapiens}
Probab=24.90 E-value=15 Score=25.46 Aligned_cols=39 Identities=23% Similarity=0.497 Sum_probs=29.7
Q ss_pred cCCccccccchhhhhccCCcCCCHHHHHHHhhccCcccC
Q psy14512 39 ACPETKKVRDACQREKEDRIGESQPFQEQTLSHQDKVYP 77 (113)
Q Consensus 39 aCpetKkaRDeCil~~GeE~c~Ck~lIEayksc~~~~~~ 77 (113)
.|.++=++=++|+-.|..+-..|......+..|-.+|-+
T Consensus 60 ~C~~ef~~y~~CL~~n~~~~~~Cr~~~~~f~~Cae~v~~ 98 (113)
T 2lql_A 60 ACAQPFEAFEECLRQNEAAVGNCAEHMRRFLQCAEQVQP 98 (113)
T ss_dssp HTHHHHHHHHHHHHHCTTCTTTCCSHHHHHHHHHTTC--
T ss_pred HhHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhcc
Confidence 466777777888888877777899999999999877654
No 9
>2kz7_C Carmil homolog, leucine-rich repeat-containing protein 16A; trosy, paramagnetic relaxation enhancement, protein-protein protein binding; NMR {Mus musculus}
Probab=21.13 E-value=61 Score=22.34 Aligned_cols=22 Identities=41% Similarity=0.750 Sum_probs=18.1
Q ss_pred CCccccccccCCCCCCCCCCcc
Q psy14512 78 GRTLSHQDKVRPGQKSNPQPSA 99 (113)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~ 99 (113)
|..|-|+-+.||-..+..+|+-
T Consensus 27 g~kL~H~Tr~RPR~~~~~~P~~ 48 (85)
T 2kz7_C 27 GRRLEHFTKLRPKRNKKQQPTQ 48 (85)
T ss_dssp CCCSCCCSCSSSCCCCCCCCSS
T ss_pred ccccccccccCCCcccccCCCC
Confidence 8899999999998777666654
No 10
>3dex_A SAV_2001; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Streptomyces avermitilis} SCOP: c.47.1.0
Probab=19.78 E-value=21 Score=24.93 Aligned_cols=26 Identities=23% Similarity=0.565 Sum_probs=7.8
Q ss_pred CCHHHHHHHhhccCcccCCCccccccccC
Q psy14512 60 ESQPFQEQTLSHQDKVYPGRTLSHQDKVR 88 (113)
Q Consensus 60 ~Ck~lIEayksc~~~~~~~~~~~~~~~~~ 88 (113)
+=+++++.= .|.+.|+|.|.|-|++.
T Consensus 76 d~keLkq~V---Rd~i~p~~~lgh~d~~~ 101 (107)
T 3dex_A 76 EPTAVKRLV---RDRVAPEKSLGHSERLE 101 (107)
T ss_dssp CHHHHHHHH---HHTTC------------
T ss_pred CHHHHHHHH---HHHhCCCCCCCCccccc
Confidence 334555444 46899999999999874
Done!