RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14512
(113 letters)
>gnl|CDD|203162 pfam05051, COX17, Cytochrome C oxidase copper chaperone (COX17).
Cox17 is essential for the assembly of functional
cytochrome c oxidase (CCO) and for delivery of copper
ions to the mitochondrion for insertion into the enzyme
in yeast. The structure of Cox17 shows the protein to
have an unstructured N-terminal region followed by two
helices and several unstructured C-terminal residues.
The Cu(I) binding site has been modelled as
two-coordinate with ligation by conserved residues
Cys23 and Cys26.
Length = 48
Score = 44.6 bits (106), Expect = 1e-07
Identities = 16/21 (76%), Positives = 16/21 (76%)
Query: 30 PEKKLKPCCACPETKKVRDAC 50
EK KPCCACPETKK RD C
Sbjct: 1 EEKPKKPCCACPETKKARDEC 21
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 585
Score = 29.0 bits (65), Expect = 0.53
Identities = 16/49 (32%), Positives = 20/49 (40%)
Query: 3 ASAAAASPESSSPLPIEAPKGAESAVNPEKKLKPCCACPETKKVRDACQ 51
+AAA SP +P P PK A +A P K+ A P R
Sbjct: 371 PTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAP 419
>gnl|CDD|178754 PLN03215, PLN03215, ascorbic acid mannose pathway regulator 1;
Provisional.
Length = 373
Score = 26.8 bits (59), Expect = 2.7
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 42 ETKKVRDACQ--REKEDRIGESQPFQEQTLSHQDKVYPGRTLS--HQDKVRPGQ 91
E K+ R C+ R +G+ PF+ + L + + P TL+ RPG
Sbjct: 24 ELKRFRSICRSWRSSVSGVGKKNPFRTRPLILFNPINPSETLTDDRSYISRPGA 77
>gnl|CDD|163563 TIGR03851, chitin_NgcE, carbohydrate ABC transporter,
N-acetylglucosamine/diacetylchitobiose-binding protein.
Members of this protein family are the
substrate-binding protein, a lipid-anchored protein of
Gram-positive bacteria in all examples found so far,
that include NgcE of the chitin-degrader, Streptomyces
olivaceoviridis, and close homologs from other species
likely to share the same function. NgcE binds both
N-acetylglucosamine and the chitin dimer,
N,N'-diacetylchitobiose [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 450
Score = 26.6 bits (59), Expect = 2.9
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 5 AAAASPESSSPLPIEAPKGAESAVNP 30
+A AS S A+SA NP
Sbjct: 8 SACASGGGSDDASSTGGGAAKSADNP 33
>gnl|CDD|215506 PLN02937, PLN02937, Putative isoaspartyl peptidase/L-asparaginase.
Length = 414
Score = 26.0 bits (57), Expect = 4.6
Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Query: 1 MFASAAAASP----ESSSPLPIEAPKGAESAVNPEKKLKPCCACPETKKVRD 48
M ASA A S +S +EAP+ S + C A E + D
Sbjct: 178 MLASAIAKSSCDSQSTSKLSELEAPRSNPSNGTGGGQSSMCTASDE-DCIMD 228
>gnl|CDD|172049 PRK13427, PRK13427, F0F1 ATP synthase subunit gamma; Provisional.
Length = 289
Score = 26.1 bits (57), Expect = 4.7
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 2 FASAAAASPESSSPLPIEAPK-GAESAVNPEKKLKP 36
+ SAA+ PE++ LP+E P AE +V + +P
Sbjct: 176 YYSAASQKPETTRVLPLEPPTAAAEGSVQDDVVYEP 211
>gnl|CDD|236880 PRK11198, PRK11198, LysM domain/BON superfamily protein;
Provisional.
Length = 147
Score = 25.6 bits (57), Expect = 5.1
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 69 LSHQDKVYPGRTL 81
L DK+YPG+ L
Sbjct: 131 LKSPDKIYPGQVL 143
>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase;
Reviewed.
Length = 460
Score = 25.3 bits (55), Expect = 8.5
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 3 ASAAAASPESSSPLPIEAPKGAESAVNPEK 32
A AA+A+PE + L EA E V PEK
Sbjct: 391 AEAASAAPEEPAALASEAHDETEPEV-PEK 419
>gnl|CDD|219522 pfam07696, 7TMR-DISMED2, 7TMR-DISM extracellular 2. This entry
represents one of two distinct types of extracellular
domain found in the 7TM-DISM (7TM Receptors with Diverse
Intracellular Signalling Modules) bacterial
transmembrane proteins. It is possible that this domain
adopts a jelly roll fold and acts as a receptor for
carbohydrates and their derivatives.
Length = 141
Score = 25.0 bits (55), Expect = 9.3
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 51 QREKEDRIGESQPFQEQTLSHQDKVYP 77
+ R G+S PF ++ + H++ V+P
Sbjct: 85 GSSRIARTGDSLPFAQRPVPHRNFVFP 111
>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional.
Length = 1465
Score = 25.2 bits (55), Expect = 9.9
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 5 AAAASPESSSPLPIEAPKGAE-SAVNPEKKLKPCCACPETKK 45
A+ +S L E K AE ++PEKK++ A P KK
Sbjct: 1355 RGPATVQSGQKLLTEMLKPAEAIGISPEKKVRKMRASPFNKK 1396
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.309 0.124 0.361
Gapped
Lambda K H
0.267 0.0647 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,299,355
Number of extensions: 407653
Number of successful extensions: 248
Number of sequences better than 10.0: 1
Number of HSP's gapped: 245
Number of HSP's successfully gapped: 25
Length of query: 113
Length of database: 10,937,602
Length adjustment: 77
Effective length of query: 36
Effective length of database: 7,522,344
Effective search space: 270804384
Effective search space used: 270804384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 53 (24.4 bits)