RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy14512
         (113 letters)



>1u96_A Cytochrome C oxidase copper chaperone; metallochaperone,
          unstructured N-terminus, two alpha- helices; NMR
          {Saccharomyces cerevisiae} SCOP: a.17.1.2 PDB: 1u97_A
          1z2g_A
          Length = 69

 Score = 45.3 bits (107), Expect = 6e-08
 Identities = 14/49 (28%), Positives = 21/49 (42%)

Query: 19 EAPKGAESAVNPEKKLKPCCACPETKKVRDACQREKEDRIGESQPFQEQ 67
          +  +  E+    E K KPCC C   K+ RD C         + + F E+
Sbjct: 5  DKKQEQENHAECEDKPKPCCVCKPEKEERDTCILFNGQDSEKCKEFIEK 53


>2l0y_B HCG2020266, COX17 cytochrome C oxidase assembly homolog (S. C
          pseudogene (COX17); oxidative protein folding,
          macromolecular complex; NMR {Homo sapiens} PDB: 2lgq_A
          2rn9_A 2rnb_A
          Length = 67

 Score = 40.5 bits (94), Expect = 4e-06
 Identities = 16/34 (47%), Positives = 19/34 (55%)

Query: 17 PIEAPKGAESAVNPEKKLKPCCACPETKKVRDAC 50
           +     A      ++ LKPCC CPETKK RDAC
Sbjct: 7  GLVDSNPALPESQEKRPLKPCCTCPETKKARDAC 40


>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2,
           protein structur initiative; 1.90A {Porphyromonas
           gingivalis}
          Length = 343

 Score = 24.9 bits (55), Expect = 8.1
 Identities = 5/45 (11%), Positives = 10/45 (22%), Gaps = 6/45 (13%)

Query: 6   AAASPESSSPLPIEAPKGAESAVNPEKKLKPCCACPETKKVRDAC 50
           +  SP         + +   +A+  E    P              
Sbjct: 236 SFQSPSYV------SIEMIRAAMGGEAFRWPAGCYVNVPGFEHIM 274


>2p0g_A Selenoprotein W-related protein; VCR75, structural genomics, PSI-2,
           protein structure initiative, northeast structural
           genomics consortium, NESG; 2.30A {Vibrio cholerae}
          Length = 105

 Score = 23.9 bits (52), Expect = 8.9
 Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 2/26 (7%)

Query: 73  DKVYPGRTLSHQDKVRPGQKSNPQPS 98
           D + P R L H D  RP    + +  
Sbjct: 78  DLIDPERDLGHVD--RPSSTQSLEHH 101


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.309    0.124    0.361 

Gapped
Lambda     K      H
   0.267   0.0412    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,522,685
Number of extensions: 71685
Number of successful extensions: 103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 10
Length of query: 113
Length of database: 6,701,793
Length adjustment: 77
Effective length of query: 36
Effective length of database: 4,551,876
Effective search space: 163867536
Effective search space used: 163867536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 51 (24.2 bits)