RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14512
         (113 letters)



>d1u97a_ a.17.1.2 (A:) Cytochrome C oxidase copper chaperone,
          COX17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
          4932]}
          Length = 69

 Score = 41.4 bits (97), Expect = 5e-07
 Identities = 14/49 (28%), Positives = 21/49 (42%)

Query: 19 EAPKGAESAVNPEKKLKPCCACPETKKVRDACQREKEDRIGESQPFQEQ 67
          +  +  E+    E K KPCC C   K+ RD C         + + F E+
Sbjct: 5  DKKQEQENHAECEDKPKPCCVCKPEKEERDTCILFNGQDSEKCKEFIEK 53


>d1nnxa_ b.40.10.1 (A:) Hypothetical protein YgiW {Escherichia
          coli [TaxId: 562]}
          Length = 106

 Score = 23.9 bits (52), Expect = 4.3
 Identities = 5/16 (31%), Positives = 9/16 (56%)

Query: 73 DKVYPGRTLSHQDKVR 88
           K + G T++ +D V 
Sbjct: 69 HKRWNGVTVTPKDTVE 84


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.309    0.124    0.361 

Gapped
Lambda     K      H
   0.267   0.0593    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 370,222
Number of extensions: 14165
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 2
Length of query: 113
Length of database: 2,407,596
Length adjustment: 71
Effective length of query: 42
Effective length of database: 1,432,766
Effective search space: 60176172
Effective search space used: 60176172
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 47 (22.2 bits)