BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14513
(209 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 66/122 (54%), Gaps = 6/122 (4%)
Query: 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPH- 89
+N+ + + +F N+ L TL ++N +L I P +F+ SL+ ++ N I+ +P
Sbjct: 62 SNNRISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEG 120
Query: 90 ELGDWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLS 149
D +L L I +NP CDC++QWL D+V K + +P + C+ P + ++ LL+
Sbjct: 121 AFNDLSALSHLAIGANPLYCDCNMQWLSDWV-KSEYKEPGIA---RCAGPGEMADKLLLT 176
Query: 150 NP 151
P
Sbjct: 177 TP 178
Score = 26.9 bits (58), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 74 LKEFYINNNAITSLPHELGDWDSLEVLDIQSN 105
+ E Y++ N T +P EL ++ L ++D+ +N
Sbjct: 33 VTELYLDGNQFTLVPKELSNYKHLTLIDLSNN 64
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE 90
+ + L AIR +F+ L++LQ L+ ++ I +F+N SL E + +N +T LPH+
Sbjct: 215 SGNHLSAIRPGSFQGLMHLQKLWM-IQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHD 273
Query: 91 L-GDWDSLEVLDIQSNPWTCDCSIQWL 116
L LE + + NPW C+C I WL
Sbjct: 274 LFTPLHHLERIHLHHNPWNCNCDILWL 300
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 35 LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLP-HELGD 93
+ I F L NL TL F+ +LT I +F LKE ++ NN I S+P +
Sbjct: 100 IRTIEIGAFNGLANLNTLEL-FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR 158
Query: 94 WDSLEVLDI 102
SL LD+
Sbjct: 159 IPSLRRLDL 167
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE- 90
+ + ++ + F+ L +L L + N ++ +HP++F + L Y+ N +++LP E
Sbjct: 162 GNRISSVPERAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA 220
Query: 91 LGDWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHL 147
L +L+ L + NPW CDC + L ++ K + + E+ CS P + + L
Sbjct: 221 LAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVP----CSLPQRLAGRDL 273
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE- 90
+ + ++ + F+ L +L L + N ++ +HP++F + L Y+ N +++LP E
Sbjct: 161 GNRISSVPERAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA 219
Query: 91 LGDWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHL 147
L +L+ L + NPW CDC + L ++ K + + E+ CS P + + L
Sbjct: 220 LAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVP----CSLPQRLAGRDL 272
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 38 IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDS 96
IR +F L +L+ L+ N +++ I +F+ SL E + +N ++SLPH+L
Sbjct: 233 IRPGSFHGLSSLKKLWV-MNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRY 291
Query: 97 LEVLDIQSNPWTCDCSIQWL 116
L L + NPW CDC I WL
Sbjct: 292 LVELHLHHNPWNCDCDILWL 311
Score = 26.9 bits (58), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 11 QDISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNN 70
Q I DT + +++ NS + I F L +L TL F+ LT I +F
Sbjct: 88 QMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLEL-FDNWLTVIPSGAFEY 145
Query: 71 DWSLKEFYINNNAITSLP 88
L+E ++ NN I S+P
Sbjct: 146 LSKLRELWLRNNPIESIP 163
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 24/127 (18%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFN-----PKLTF------------------IHPYSF 68
++ L A+ NTF++L NL L+ + N P+ F +HP++F
Sbjct: 137 DNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAF 196
Query: 69 NNDWSLKEFYINNNAITSLPHE-LGDWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTD 127
+ L Y+ N ++ LP E L SL+ L + NPW CDC + L ++ K + +
Sbjct: 197 RDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDNPWVCDCRARPLWAWLQKFRGSS 256
Query: 128 PELNYNL 134
E+ NL
Sbjct: 257 SEVPCNL 263
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE 90
+ + L IR +F+ L +L+ L+ + ++ I +F++ SL+E +++N + SLPH+
Sbjct: 186 SGNRLDLIRPGSFQGLTSLRKLWL-MHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHD 244
Query: 91 L-GDWDSLEVLDIQSNPWTCDCSIQWL 116
L LE + + NPW C+C + WL
Sbjct: 245 LFTPLHRLERVHLNHNPWHCNCDVLWL 271
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 38 IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLP-HELGDWDS 96
I F L +L TL F+ +LT + +F L+E ++ NN I S+P + S
Sbjct: 74 IEVGAFNGLPSLNTLEL-FDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPS 132
Query: 97 LEVLDI 102
L LD+
Sbjct: 133 LRRLDL 138
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE 90
+ + L IR +F+ L +L+ L+ + ++ I +F++ SL+E +++N + SLPH+
Sbjct: 186 SGNRLDLIRPGSFQGLTSLRKLWL-MHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHD 244
Query: 91 L-GDWDSLEVLDIQSNPWTCDCSIQWL 116
L LE + + NPW C+C + WL
Sbjct: 245 LFTPLHRLERVHLNHNPWHCNCDVLWL 271
Score = 26.9 bits (58), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 38 IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLP 88
I F L +L TL F+ +LT + +F L+E ++ NN I S+P
Sbjct: 74 IEVGAFNGLPSLNTLEL-FDNRLTTVPTQAFEYLSKLRELWLRNNPIESIP 123
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 7/94 (7%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL 91
N+++ + F +L+NLQ LY N N KLT I F+ L + +N+N + S+P
Sbjct: 42 NNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNHLKSIPR-- 98
Query: 92 GDWDSLEVLD---IQSNPWTCDC-SIQWLIDYVA 121
G +D+L+ L + +NPW C+C I +L ++VA
Sbjct: 99 GAFDNLKSLTHIYLYNNPWDCECRDIMYLRNWVA 132
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 4/101 (3%)
Query: 42 TFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGD--WDSLEV 99
FK+L L+ + N L + FNN SLK + N ITS+ ++ + +L
Sbjct: 560 VFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTE 618
Query: 100 LDIQSNPWTCDC-SIQWLIDYVAKRQRTDPELNYNLHCSQP 139
LD++ NP+ C C SI W ++++ + PEL+ + C+ P
Sbjct: 619 LDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTP 659
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 4/101 (3%)
Query: 42 TFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGD--WDSLEV 99
FK+L L+ + N L + FNN SLK + N ITS+ ++ + +L
Sbjct: 565 VFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTE 623
Query: 100 LDIQSNPWTCDC-SIQWLIDYVAKRQRTDPELNYNLHCSQP 139
LD++ NP+ C C SI W ++++ + PEL+ + C+ P
Sbjct: 624 LDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTP 664
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 4/101 (3%)
Query: 42 TFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGD--WDSLEV 99
FK+L L+ + N L + FNN SLK + N ITS+ ++ + +L
Sbjct: 555 VFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTE 613
Query: 100 LDIQSNPWTCDC-SIQWLIDYVAKRQRTDPELNYNLHCSQP 139
LD++ NP+ C C SI W ++++ + PEL+ + C+ P
Sbjct: 614 LDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTP 654
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 11/103 (10%)
Query: 34 ELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGD 93
EL ++ K F L +L+ L +N +L + +F+ LK ++NN + +P G
Sbjct: 144 ELQSLPKGVFDKLTSLKELRL-YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE--GA 200
Query: 94 WDSLE---VLDIQSNPWTCDCSIQWLIDYVAK--RQRTDPELN 131
+DSLE +L +Q NPW C C+ I Y+AK +++ D L
Sbjct: 201 FDSLEKLKMLQLQENPWDCTCNG---IIYMAKWLKKKADEGLG 240
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 19 YTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFY 78
+ + K++L Y N +L + FK L NL+TL+ N KL + F+ +L E
Sbjct: 58 HRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDN-KLQALPIGVFDQLVNLAELR 115
Query: 79 INNNAITSLPHELGDWDSLEVL 100
++ N + SLP + +DSL L
Sbjct: 116 LDRNQLKSLPPRV--FDSLTKL 135
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 21/129 (16%)
Query: 41 NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPH-------ELGD 93
+ F+ L +LQ LY N N L + P F++ +L+ +N+N +T L H E+ D
Sbjct: 474 DVFEGLSHLQVLYLNHN-YLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILD 532
Query: 94 -------------WDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPV 140
+ SL VLDI N + C+C + I+++ T +++C P
Sbjct: 533 ISRNQLLAPNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPD 592
Query: 141 KFSNVHLLS 149
FS V L S
Sbjct: 593 SFSGVSLFS 601
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 60/141 (42%), Gaps = 8/141 (5%)
Query: 13 ISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDW 72
IS D + + + ++L I N F+ ++Q L N K+ I F
Sbjct: 44 ISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLH 102
Query: 73 SLKEFYINNNAITS-LPHELGDWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELN 131
LK + +N I+ +P +SL L++ SNP+ C+C + W +++ K+ LN
Sbjct: 103 QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKS-----LN 157
Query: 132 YN-LHCSQPVKFSNVHLLSNP 151
C P K +V + P
Sbjct: 158 GGAARCGAPSKVRDVQIKDLP 178
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 4/108 (3%)
Query: 35 LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGD- 93
L I FKNL L+++ N L + P+ F++ SL+ + N ITS+ ++
Sbjct: 548 LDEIPVGVFKNLFELKSINLGLN-NLNKLEPFIFDDQTSLRSLNLQKNLITSVEKDVFGP 606
Query: 94 -WDSLEVLDIQSNPWTCDC-SIQWLIDYVAKRQRTDPELNYNLHCSQP 139
+ +L LD++ NP+ C C SI W ++++ + EL+ + C+ P
Sbjct: 607 PFQNLNSLDMRFNPFDCTCESISWFVNWINQTHTNISELSTHYLCNTP 654
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Query: 34 ELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSL-PHELG 92
L ++ FK L +L+TL N ++T + SF S++ + +N IT++ P
Sbjct: 92 RLENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD 150
Query: 93 DWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQP 139
SL L++ +NP+ C+C + WL +++ K++ + N C +P
Sbjct: 151 TLHSLSTLNLLANPFNCNCYLAWLGEWLRKKRI----VTGNPRCQKP 193
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 43 FKNLLNLQTLYCNF-NPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVL 100
FK L L+ + NF N K+T I +F + E + +N + ++ H++ +SL+ L
Sbjct: 53 FKKLPQLRKI--NFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTL 110
Query: 101 DIQSNPWTC 109
++SN TC
Sbjct: 111 MLRSNRITC 119
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 38 IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLP----HELGD 93
I + LL LQ + +L + PY+F L+ ++ N +T+L H +G+
Sbjct: 263 IEGSMLHELLRLQEIQL-VGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGN 321
Query: 94 WDSLEVLDIQSNPWTCDCSIQWL 116
LE L + SNP CDC + W+
Sbjct: 322 ---LETLILDSNPLACDCRLLWV 341
>pdb|3RFE|A Chain A, Crystal Structure Of Glycoprotein Gpib Ectodomain
pdb|3RFE|B Chain B, Crystal Structure Of Glycoprotein Gpib Ectodomain
Length = 130
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 42/102 (41%), Gaps = 6/102 (5%)
Query: 65 PYSFNNDWSLKEFYINNNAITSLPHELGD-WDSLEVLDIQSNPWTCDCSIQWLIDYVAKR 123
P +F D + E + N +T+LP L D +L + +NPW CDC + L ++A R
Sbjct: 26 PTAFPVDTT--ELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGR 83
Query: 124 QRTDPELNYNLHCSQPVKFSNVHLLSNPLLSHISGECVKGAL 165
P +L C P LL + C G L
Sbjct: 84 PERAP--YRDLRCVAPPALRG-RLLPYLAEDELRAACAPGPL 122
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 29 STANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLP 88
S + +++ ++ F L L LY + N KL + F+ LKE ++ N + S+P
Sbjct: 58 SLSQNQIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKELALDTNQLKSVP 116
Query: 89 HELGD-WDSLEVLDIQSNPWTCDCSIQWLIDYVAK 122
+ D SL+ + + +NPW C C IDY+++
Sbjct: 117 DGIFDRLTSLQKIWLHTNPWDCSCP---RIDYLSR 148
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 44 KNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQ 103
KNL NL+ L + N +LT + P + + LK FY +N +T+LP E G+ +L+ L ++
Sbjct: 267 KNLSNLRVLDLSHN-RLTSL-PAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVE 324
Query: 104 SNP 106
NP
Sbjct: 325 GNP 327
Score = 31.2 bits (69), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 74 LKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWT 108
L Y+N N++T LP E+ + +L VLD+ N T
Sbjct: 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT 283
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 10/93 (10%)
Query: 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE 90
+N +++ I N FK L LY N N LT + P N +L+ +++N +TSLP E
Sbjct: 232 SNLQIFNISANIFKYDF-LTRLYLNGN-SLTEL-PAEIKNLSNLRVLDLSHNRLTSLPAE 288
Query: 91 LGDWDSLEVLDIQSN-----PWTCD--CSIQWL 116
LG L+ N PW C++Q+L
Sbjct: 289 LGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFL 321
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 96 SLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHL 147
+++ + + NP+ CDC ++WL DY+ T+P C+ P + +N +
Sbjct: 153 AIQTMHLAQNPFICDCHLKWLADYL----HTNPIETSGARCTSPRRLANKRI 200
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 96 SLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHL 147
+++ + + NP+ CDC ++WL DY+ T+P C+ P + +N +
Sbjct: 153 AIQTMHLAQNPFICDCHLKWLADYL----HTNPIETSGARCTSPRRLANKRI 200
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE 90
A+++L ++ K F L NL L ++N +L + F+ LK+ + N + S+P
Sbjct: 141 AHNQLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDG 199
Query: 91 LGD-WDSLEVLDIQSNPWTCDC-SIQWLIDYVAK 122
+ D SL+ + + NPW C C I++L +++ K
Sbjct: 200 VFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINK 233
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 60 LTFIHPYSFNNDWSLKEFYINNNAITSLPHELGD-WDSLEVLDIQSNPWTCDCSIQWLID 118
+ FI P +F + LKE ++ N + S+P + D SL+ + + +NPW C C ID
Sbjct: 191 MNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP---RID 246
Query: 119 YVAK 122
Y+++
Sbjct: 247 YLSR 250
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 60 LTFIHPYSFNNDWSLKEFYINNNAITSLPHELGD-WDSLEVLDIQSNPWTCDCSIQWLID 118
+ FI P +F + LKE ++ N + S+P + D SL+ + + +NPW C C ID
Sbjct: 190 MNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP---RID 245
Query: 119 YVAK 122
Y+++
Sbjct: 246 YLSR 249
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 60 LTFIHPYSFNNDWSLKEFYINNNAITSLPHELGD-WDSLEVLDIQSNPWTCDCSIQWLID 118
+ FI P +F + LKE ++ N + S+P + D SL+ + + +NPW C C ID
Sbjct: 189 MNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP---RID 244
Query: 119 YVAK 122
Y+++
Sbjct: 245 YLSR 248
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 60 LTFIHPYSFNNDWSLKEFYINNNAITSLPHELGD-WDSLEVLDIQSNPWTCDCSIQWLID 118
+ FI P +F + LKE ++ N + S+P + D SL+ + + +NPW C C ID
Sbjct: 191 MNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP---RID 246
Query: 119 YVAK 122
Y+++
Sbjct: 247 YLSR 250
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 60 LTFIHPYSFNNDWSLKEFYINNNAITSLPHELGD-WDSLEVLDIQSNPWTCDCSIQWLID 118
+ FI P +F + LKE ++ N + S+P + D SL+ + + +NPW C C ID
Sbjct: 190 MNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP---RID 245
Query: 119 YVAK 122
Y+++
Sbjct: 246 YLSR 249
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
Query: 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE 90
+ S+++A+ K+ F + +L+ L N ++ I +F LKE ++ N + S+P
Sbjct: 283 SKSKIFALLKSVFSHFTDLEQLTLAQN-EINKIDDNAFWGLTHLKELALDTNQLKSVPDG 341
Query: 91 LGD-WDSLEVLDIQSNPWTCDCSIQWLIDYVAK 122
+ D SL+ + + +NPW C C IDY+++
Sbjct: 342 IFDRLTSLQKIWLHTNPWDCSCP---RIDYLSR 371
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 14/109 (12%)
Query: 17 TQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKE 76
TQ T++ + ++L + F L++L+ L+ N KLT + P L
Sbjct: 88 TQLTVLDL------GTNQLTVLPSAVFDRLVHLKELFMCCN-KLTEL-PRGIERLTHLTH 139
Query: 77 FYINNNAITSLPHELGDWDSLEVLD---IQSNPWTCDC-SIQWLIDYVA 121
++ N + S+PH G +D L L + NPW C+C I +L ++VA
Sbjct: 140 LALDQNQLKSIPH--GAFDRLSSLTHAYLFGNPWDCECRDIMYLRNWVA 186
Score = 35.0 bits (79), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 6/64 (9%)
Query: 48 NLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDS---LEVLDIQS 104
N Q LY + N ++T + P F++ +LKE Y+ +N + +LP +G +DS L VLD+ +
Sbjct: 41 NAQILYLHDN-QITKLEPGVFDSLINLKELYLGSNQLGALP--VGVFDSLTQLTVLDLGT 97
Query: 105 NPWT 108
N T
Sbjct: 98 NQLT 101
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 35 LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGD- 93
L +I F+NL L+ L ++N + + SF +LKE ++ N + S+P + D
Sbjct: 335 LGSIDSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDR 393
Query: 94 WDSLEVLDIQSNPWTCDCSIQWLIDYVAK 122
SL+ + + +NPW C C IDY+++
Sbjct: 394 LTSLQKIWLHTNPWDCSCP---RIDYLSR 419
>pdb|2IFG|A Chain A, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
pdb|2IFG|B Chain B, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
Length = 347
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 37/83 (44%)
Query: 59 KLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWTCDCSIQWLID 118
L F+ P +F+ L ++ NA+ SL + SL+ L + NP C C+++WL
Sbjct: 67 GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQR 126
Query: 119 YVAKRQRTDPELNYNLHCSQPVK 141
+ + PE H P+
Sbjct: 127 WEEEGLGGVPEQKLQCHGQGPLA 149
>pdb|3REZ|A Chain A, Glycoprotein Gpib Variant
pdb|3REZ|B Chain B, Glycoprotein Gpib Variant
pdb|3REZ|C Chain C, Glycoprotein Gpib Variant
pdb|3REZ|D Chain D, Glycoprotein Gpib Variant
Length = 129
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 8/93 (8%)
Query: 76 EFYINNNAITSLPHELGDWDSLEVLD---IQSNPWTCDCSIQWLIDYVAKRQRTDPELNY 132
E + N +TS+P G +D L L + +NPW CDCS+ +L ++ R P
Sbjct: 34 ELVLTGNNLTSVPP--GAFDHLPQLRTAHLGANPWRCDCSLTYLRLWLEDRPERAP--YR 89
Query: 133 NLHCSQPVKFSNVHLLSNPLLSHISGECVKGAL 165
+L C P LL + C G L
Sbjct: 90 DLRCVAPPALRG-RLLPYLAEDELRAACAPGPL 121
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 16 DTQYTIMKVQLPYSTA-----NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNN 70
DT T + LP S +++ + + K L NL L +FN ++ + S N
Sbjct: 180 DTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLAN 238
Query: 71 DWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSN 105
L+E ++NNN + +P L D ++V+ + +N
Sbjct: 239 TPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN 273
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 35.0 bits (79), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 16 DTQYTIMKVQLPYSTA-----NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNN 70
DT T + LP S +++ + + K L NL L +FN ++ + S N
Sbjct: 180 DTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLAN 238
Query: 71 DWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSN 105
L+E ++NNN + +P L D ++V+ + +N
Sbjct: 239 TPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN 273
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 34.7 bits (78), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 34 ELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGD 93
+L ++ K F L NL L + N +L + F+ LK+ +N+N + S+P G
Sbjct: 144 QLQSLPKGVFDKLTNLTRLDLD-NNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPD--GV 200
Query: 94 WDSLEVLD---IQSNPWTCDCS 112
+D L L + +NPW C CS
Sbjct: 201 FDRLTSLTHIWLLNNPWDCACS 222
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 34.3 bits (77), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 9/81 (11%)
Query: 11 QDISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNN 70
++IS DT T++ +Q N+++ +RK+ FK L +L L N K++ IH +F+
Sbjct: 50 KEISPDT--TLLDLQ------NNDISELRKDDFKGLQHLYALVL-VNNKISKIHEKAFSP 100
Query: 71 DWSLKEFYINNNAITSLPHEL 91
L++ YI+ N + +P L
Sbjct: 101 LRKLQKLYISKNHLVEIPPNL 121
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 34.3 bits (77), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE 90
+ ++L ++ F L L+ L N N +L + F+ LK+ + N + S+P
Sbjct: 84 STNQLQSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDG 142
Query: 91 LGD-WDSLEVLDIQSNPWTCDC-SIQWLIDYVAK 122
+ D SL+ + + NPW C C I++L +++ K
Sbjct: 143 VFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINK 176
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 33.5 bits (75), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 59 KLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGD-WDSLEVLDIQSNPWTCDCSIQWLI 117
+L + P +FN+ SL+ + +N + S+P + D SL+ + + +NPW C C I
Sbjct: 481 QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP---RI 537
Query: 118 DYVAK 122
DY+++
Sbjct: 538 DYLSR 542
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 33.5 bits (75), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL 91
++++ + F L L L + N +LT + F+ L + +N+N + S+P
Sbjct: 47 DNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDNQLKSIPR-- 103
Query: 92 GDWDSLEVLD---IQSNPWTCDCS 112
G +D+L+ L + +NPW C CS
Sbjct: 104 GAFDNLKSLTHIWLLNNPWDCACS 127
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGD-WDSLEVLD 101
F +L NL+++ N KL + F LK+ + +N + S+P + D SL+ +
Sbjct: 166 FDDLENLESIEFGSN-KLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIW 224
Query: 102 IQSNPWTCDCSIQWLIDYVAK 122
+ +NPW C C IDY+++
Sbjct: 225 LHTNPWDCSCP---RIDYLSR 242
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL 91
++++ + F L L L + N +LT + F+ L + +N+N + S+P
Sbjct: 39 DNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDNQLKSIPR-- 95
Query: 92 GDWDSLEVLD---IQSNPWTCDCS 112
G +D+L+ L + +NPW C CS
Sbjct: 96 GAFDNLKSLTHIWLLNNPWDCACS 119
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 30 TANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLP- 88
+ N L I + F NL L + L +I+P +F N +L+ I+N I LP
Sbjct: 62 SQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD 121
Query: 89 -HELGDWDSLEVLDIQSN 105
H++ + +LDIQ N
Sbjct: 122 VHKIHSLQKV-LLDIQDN 138
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 30 TANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLP- 88
+ N L I + F NL L + L +I+P +F N +L+ I+N I LP
Sbjct: 62 SQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD 121
Query: 89 -HELGDWDSLEVLDIQSN 105
H++ + +LDIQ N
Sbjct: 122 VHKIHSLQKV-LLDIQDN 138
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL 91
++ + + F L L L + N +LT + F+ L + +N+N + S+P
Sbjct: 39 DNRITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDNQLKSIPR-- 95
Query: 92 GDWDSLEVLD---IQSNPWTCDCS 112
G +D+L L + +NPW C CS
Sbjct: 96 GAFDNLRSLTHIWLLNNPWDCACS 119
>pdb|1QMU|A Chain A, Duck Carboxypeptidase D Domain Ii
pdb|1H8L|A Chain A, Duck Carboxypeptidase D Domain Ii In Complex With Gemsa
Length = 380
Score = 31.2 bits (69), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 10/131 (7%)
Query: 38 IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSL 97
R + F ++ Y N P +T + YS L+E Y+ + HE G+ +
Sbjct: 8 FRHHHFSDMEIFLRRYANEYPSITRL--YSVGKSVELRELYVMEISDNPGIHEAGEPEFK 65
Query: 98 EVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLS--NPLLSH 155
+ ++ N + LI+Y+ K TDPE+ + V+ + +H++ NP
Sbjct: 66 YIGNMHGNEVVGRELLLNLIEYLCKNFGTDPEV------TDLVQSTRIHIMPSMNPDGYE 119
Query: 156 ISGECVKGALV 166
S E +G V
Sbjct: 120 KSQEGDRGGTV 130
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 31.2 bits (69), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 14/124 (11%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWS----LKEFYINNNAITSL 87
N+ + + +N F+++ LQ LY + N F P D + L +++N + L
Sbjct: 121 NNHIVVVDRNAFEDMAQLQKLYLSQNQISRF--PVELIKDGNKLPKLMLLDLSSNKLKKL 178
Query: 88 PHELGDWDSLEV-----LDIQSNPWTCDCSIQWLIDYVAKRQRTDP-ELNYNLHCSQPVK 141
P L D L L + +NP CDC + L + RQ + + +L+C K
Sbjct: 179 P--LTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKK 236
Query: 142 FSNV 145
N+
Sbjct: 237 LHNI 240
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 30.8 bits (68), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 42/115 (36%), Gaps = 33/115 (28%)
Query: 34 ELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGD 93
L ++ + L LQ LY N +L + P L++ + NN +T LP G
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNQLTELPA--GL 167
Query: 94 WDSLEVLD--------------------------IQSNPWTCDCSI----QWLID 118
+ LE LD + NPW C+C I +WL D
Sbjct: 168 LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQD 222
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 30.8 bits (68), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 42/115 (36%), Gaps = 33/115 (28%)
Query: 34 ELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGD 93
L ++ + L LQ LY N +L + P L++ + NN +T LP G
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNQLTELPA--GL 167
Query: 94 WDSLEVLD--------------------------IQSNPWTCDCSI----QWLID 118
+ LE LD + NPW C+C I +WL D
Sbjct: 168 LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQD 222
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 30.8 bits (68), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 42/115 (36%), Gaps = 33/115 (28%)
Query: 34 ELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGD 93
L ++ + L LQ LY N +L + P L++ + NN +T LP G
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNQLTELPA--GL 167
Query: 94 WDSLEVLD--------------------------IQSNPWTCDCSI----QWLID 118
+ LE LD + NPW C+C I +WL D
Sbjct: 168 LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQD 222
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 30.4 bits (67), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 73 SLKEFYINNNAITSLPHELGD-WDSLEVLDIQSNPWTCDC-SIQWLIDYVAK 122
+L+E + +N + S+P + D SL+ + + NPW C C I++L +++ K
Sbjct: 474 ALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINK 525
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 30.4 bits (67), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 42/115 (36%), Gaps = 33/115 (28%)
Query: 34 ELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGD 93
L ++ + L LQ LY N +L + P L++ + NN +T LP G
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNQLTELPA--GL 167
Query: 94 WDSLEVLD--------------------------IQSNPWTCDCSI----QWLID 118
+ LE LD + NPW C+C I +WL D
Sbjct: 168 LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQD 222
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 30.4 bits (67), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 73 SLKEFYINNNAITSLPHELGD-WDSLEVLDIQSNPWTCDCSIQWLIDYVAK 122
+L+E + +N + S+P + D SL+ + + +NPW C C IDY+++
Sbjct: 445 ALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP---RIDYLSR 492
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 30.4 bits (67), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 42/114 (36%), Gaps = 33/114 (28%)
Query: 35 LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDW 94
L ++ + L LQ LY N +L + P L++ + NN +T LP G
Sbjct: 112 LTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLTELPA--GLL 168
Query: 95 DSLEVLD--------------------------IQSNPWTCDCSI----QWLID 118
+ LE LD + NPW C+C I +WL D
Sbjct: 169 NGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQD 222
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 30.4 bits (67), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 42/114 (36%), Gaps = 33/114 (28%)
Query: 35 LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDW 94
L ++ + L LQ LY N +L + P L++ + NN +T LP G
Sbjct: 112 LTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLTELPA--GLL 168
Query: 95 DSLEVLD--------------------------IQSNPWTCDCSI----QWLID 118
+ LE LD + NPW C+C I +WL D
Sbjct: 169 NGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQD 222
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 30.0 bits (66), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 42/115 (36%), Gaps = 33/115 (28%)
Query: 34 ELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGD 93
L ++ + L LQ LY N +L + P L++ + NN +T LP G
Sbjct: 112 RLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLTELPA--GL 168
Query: 94 WDSLEVLD--------------------------IQSNPWTCDCSI----QWLID 118
+ LE LD + NPW C+C I +WL D
Sbjct: 169 LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQD 223
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 30.0 bits (66), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 42/114 (36%), Gaps = 33/114 (28%)
Query: 35 LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDW 94
L ++ + L LQ LY N +L + P L++ + NN +T LP G
Sbjct: 112 LTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNDLTELPA--GLL 168
Query: 95 DSLEVLD--------------------------IQSNPWTCDCSI----QWLID 118
+ LE LD + NPW C+C I +WL D
Sbjct: 169 NGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQD 222
>pdb|1KWM|A Chain A, Human Procarboxypeptidase B: Three-Dimensional Structure
And Implications For Thrombin-Activatable Fibrinolysis
Inhibitor (Tafi)
pdb|1KWM|B Chain B, Human Procarboxypeptidase B: Three-Dimensional Structure
And Implications For Thrombin-Activatable Fibrinolysis
Inhibitor (Tafi)
Length = 402
Score = 30.0 bits (66), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Query: 27 PYSTA------NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFN-NDWS 73
PYS A N+EL A+ K T K L +L + P T I+P + +DW+
Sbjct: 298 PYSYAYKLGENNAELNALAKATVKELASLHGTKYTYGPGATTIYPAAGGSDDWA 351
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 30.0 bits (66), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 42/115 (36%), Gaps = 33/115 (28%)
Query: 34 ELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGD 93
L ++ + L LQ LY N +L + P L++ + NN +T LP G
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLTELPA--GL 167
Query: 94 WDSLEVLD--------------------------IQSNPWTCDCSI----QWLID 118
+ LE LD + NPW C+C I +WL D
Sbjct: 168 LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQD 222
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 42/115 (36%), Gaps = 33/115 (28%)
Query: 34 ELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGD 93
L ++ + L LQ LY N +L + P L++ + NN +T LP G
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLTELPA--GL 167
Query: 94 WDSLEVLD--------------------------IQSNPWTCDCSI----QWLID 118
+ LE LD + NPW C+C I +WL D
Sbjct: 168 LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQD 222
>pdb|1ZLI|A Chain A, Crystal Structure Of The Tick Carboxypeptidase Inhibitor
In Complex With Human Carboxypeptidase B
Length = 309
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Query: 27 PYSTA------NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFN-NDWS 73
PYS A N+EL A+ K T K L +L + P T I+P + +DW+
Sbjct: 205 PYSYAYKLGENNAELNALAKATVKELASLHGTKYTYGPGATTIYPAAGGSDDWA 258
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Query: 34 ELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGD 93
++ + F +L L L N +LT + F+ L ++ N + S+P +G
Sbjct: 51 QITKLEPGVFDSLTQLTYLNLAVN-QLTALPVGVFDKLTKLTHLALHINQLKSIP--MGV 107
Query: 94 WDSLEVLD---IQSNPWTCDCS-IQWLIDYVAK 122
+D+L+ L + +NPW C+CS I +L +++ +
Sbjct: 108 FDNLKSLTHIYLFNNPWDCECSDILYLKNWIVQ 140
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 73 SLKEFYINNNAITSLPHELGD-WDSLEVLDIQSNPWTCDCSIQWLIDYVAK 122
L E + N + S+P + D SL+ + + +NPW C C IDY+++
Sbjct: 278 GLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP---RIDYLSR 325
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 79 INNNAITSLPHELGD-WDSLEVLDIQSNPWTCDCSIQWLIDYVAK 122
I+ N + S+P + D SL+ + + +NPW C C IDY+++
Sbjct: 480 ISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP---RIDYLSR 521
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 74 LKEFYIN---NNAITSLPHELGDWDSLEVLDIQSNPWTCDCS----IQWLIDYVAKRQRT 126
LK Y+N NN PH L ++++ NP C CS I W + + K + +
Sbjct: 522 LKGLYLNMASNNIRIIPPHLLPALSQQSIINLSHNPLDCTCSNIHFITWYKENLHKLEDS 581
Query: 127 DPELNYNLHCSQPVKFSNVHL 147
+ N + VK S+V L
Sbjct: 582 EETTCANPPSLRGVKLSDVKL 602
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 79 INNNAITSLPHELGD-WDSLEVLDIQSNPWTCDCSIQWLIDYVAK 122
I+ N + S+P + D SL+ + + +NPW C C IDY+++
Sbjct: 480 ISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP---RIDYLSR 521
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 79 INNNAITSLPHELGD-WDSLEVLDIQSNPWTCDCSIQWLIDYVAK 122
I +N + S+P + D SL+ + + +NPW C C IDY+++
Sbjct: 506 IASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP---RIDYLSR 547
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 81 NNAITSLPHELGDWDSLEVLDIQSN 105
N+ S+P E+GD L +LD+ SN
Sbjct: 663 NDISGSIPDEVGDLRGLNILDLSSN 687
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 26.9 bits (58), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 81 NNAITSLPHELGDWDSLEVLDIQSN 105
N+ S+P E+GD L +LD+ SN
Sbjct: 666 NDISGSIPDEVGDLRGLNILDLSSN 690
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 74 LKEFYIN---NNAITSLPHELGDWDSLEVLDIQSNPWTCDCS----IQWLIDYVAKRQRT 126
LK Y+N N+ LP L ++++ NP C CS ++W + + K + T
Sbjct: 523 LKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDT 582
Query: 127 DPELNYNLHCSQPVKFSNVHL 147
+ L N + V+ S+V L
Sbjct: 583 EDTLCENPPLLRGVRLSDVTL 603
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,655,326
Number of Sequences: 62578
Number of extensions: 211813
Number of successful extensions: 585
Number of sequences better than 100.0: 71
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 509
Number of HSP's gapped (non-prelim): 101
length of query: 209
length of database: 14,973,337
effective HSP length: 94
effective length of query: 115
effective length of database: 9,091,005
effective search space: 1045465575
effective search space used: 1045465575
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)