Query psy14513
Match_columns 209
No_of_seqs 153 out of 1658
Neff 9.2
Searched_HMMs 46136
Date Fri Aug 16 21:50:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14513.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14513hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4237|consensus 99.8 2.3E-20 5E-25 153.2 5.2 140 16-165 268-408 (498)
2 KOG4194|consensus 99.7 2E-17 4.4E-22 141.8 2.2 127 31-164 349-502 (873)
3 KOG4237|consensus 99.6 3E-16 6.6E-21 129.2 -0.8 186 5-209 57-247 (498)
4 TIGR00864 PCC polycystin catio 99.2 1.2E-11 2.6E-16 121.4 6.4 86 78-167 1-87 (2740)
5 PLN00113 leucine-rich repeat r 99.2 1.6E-10 3.4E-15 108.8 10.9 82 31-113 507-589 (968)
6 PF13855 LRR_8: Leucine rich r 99.2 2.4E-11 5.1E-16 76.2 3.2 53 31-84 9-61 (61)
7 PF13855 LRR_8: Leucine rich r 99.1 5.4E-11 1.2E-15 74.6 3.9 60 47-107 1-61 (61)
8 PLN03150 hypothetical protein; 99.0 7.6E-10 1.6E-14 99.6 8.7 87 21-112 420-507 (623)
9 PF14580 LRR_9: Leucine-rich r 98.8 2.9E-09 6.3E-14 80.7 2.8 87 19-112 42-130 (175)
10 PLN00113 leucine-rich repeat r 98.7 2E-08 4.3E-13 94.7 7.1 86 20-110 476-562 (968)
11 smart00082 LRRCT Leucine rich 98.7 7.8E-09 1.7E-13 62.2 2.4 51 105-161 1-51 (51)
12 KOG0444|consensus 98.6 4.1E-09 9E-14 92.4 -1.0 96 5-108 91-186 (1255)
13 PLN03150 hypothetical protein; 98.6 7.7E-08 1.7E-12 86.7 5.8 87 20-111 443-531 (623)
14 KOG4194|consensus 98.5 3.6E-08 7.9E-13 85.8 2.7 51 31-82 181-231 (873)
15 KOG0472|consensus 98.4 6.7E-08 1.5E-12 80.8 0.8 88 31-121 236-329 (565)
16 PF14580 LRR_9: Leucine-rich r 98.3 1.6E-07 3.5E-12 71.2 0.6 81 21-109 21-102 (175)
17 KOG0617|consensus 98.3 1.5E-07 3.3E-12 70.5 0.1 82 22-110 36-117 (264)
18 KOG0444|consensus 98.3 1.3E-07 2.8E-12 83.3 -0.8 48 8-57 136-183 (1255)
19 KOG0472|consensus 98.1 7.1E-07 1.5E-11 74.8 1.1 82 21-108 437-541 (565)
20 KOG0618|consensus 98.1 2.1E-07 4.7E-12 84.5 -3.7 82 22-107 383-464 (1081)
21 PF12799 LRR_4: Leucine Rich r 98.0 3E-06 6.6E-11 49.2 2.2 38 48-87 2-39 (44)
22 PRK15387 E3 ubiquitin-protein 98.0 6.3E-06 1.4E-10 75.6 4.5 59 47-110 402-460 (788)
23 KOG0618|consensus 98.0 8.4E-07 1.8E-11 80.8 -1.4 90 13-107 398-488 (1081)
24 KOG0532|consensus 97.9 2E-06 4.3E-11 74.9 0.2 75 31-109 174-248 (722)
25 KOG1644|consensus 97.9 1E-05 2.2E-10 62.1 3.7 76 29-107 48-125 (233)
26 KOG0617|consensus 97.9 7.7E-07 1.7E-11 66.8 -3.0 98 4-109 66-164 (264)
27 PF12799 LRR_4: Leucine Rich r 97.8 1.2E-05 2.6E-10 46.7 2.4 37 72-108 1-37 (44)
28 PRK15370 E3 ubiquitin-protein 97.8 5.1E-05 1.1E-09 69.8 6.5 54 49-108 243-296 (754)
29 KOG1259|consensus 97.8 3.5E-06 7.6E-11 68.4 -0.9 53 31-87 292-344 (490)
30 PRK15370 E3 ubiquitin-protein 97.8 4.2E-05 9E-10 70.3 5.8 87 5-108 189-275 (754)
31 PRK15387 E3 ubiquitin-protein 97.7 6E-05 1.3E-09 69.3 5.8 49 4-65 211-259 (788)
32 KOG1859|consensus 97.7 2.2E-06 4.8E-11 76.6 -4.1 77 30-110 194-294 (1096)
33 KOG1259|consensus 97.5 2.8E-05 6E-10 63.3 0.7 59 46-107 283-341 (490)
34 KOG4579|consensus 97.4 6.1E-06 1.3E-10 59.7 -3.6 74 31-106 61-134 (177)
35 KOG4579|consensus 97.0 3.8E-05 8.2E-10 55.7 -2.9 81 31-112 35-117 (177)
36 COG4886 Leucine-rich repeat (L 97.0 0.00018 3.9E-09 61.3 0.4 80 20-106 141-220 (394)
37 KOG0532|consensus 96.8 0.00011 2.4E-09 64.3 -2.6 108 2-120 129-240 (722)
38 PLN03210 Resistant to P. syrin 96.8 0.0024 5.3E-08 61.9 5.8 33 72-104 846-878 (1153)
39 KOG0531|consensus 96.7 0.00076 1.6E-08 58.1 1.9 81 18-107 94-174 (414)
40 cd00116 LRR_RI Leucine-rich re 96.7 0.00076 1.6E-08 55.4 1.4 14 47-61 137-150 (319)
41 KOG1644|consensus 96.6 0.0021 4.5E-08 49.6 3.2 76 29-105 70-150 (233)
42 cd00116 LRR_RI Leucine-rich re 96.5 0.00058 1.2E-08 56.1 -0.1 78 31-109 89-179 (319)
43 COG4886 Leucine-rich repeat (L 96.5 0.0014 3E-08 55.8 1.7 81 21-108 118-199 (394)
44 PLN03210 Resistant to P. syrin 96.3 0.0092 2E-07 57.9 6.6 20 70-89 679-699 (1153)
45 KOG4658|consensus 96.3 0.0012 2.5E-08 62.0 0.4 75 31-106 553-629 (889)
46 smart00369 LRR_TYP Leucine-ric 96.1 0.003 6.6E-08 31.9 1.2 23 46-69 1-23 (26)
47 smart00370 LRR Leucine-rich re 96.1 0.003 6.6E-08 31.9 1.2 23 46-69 1-23 (26)
48 PF00560 LRR_1: Leucine Rich R 96.0 0.0043 9.4E-08 30.1 1.3 17 74-90 2-18 (22)
49 PF13306 LRR_5: Leucine rich r 95.9 0.017 3.7E-07 40.8 4.9 70 33-105 21-91 (129)
50 KOG1859|consensus 95.9 0.0013 2.7E-08 59.6 -1.5 56 31-90 172-227 (1096)
51 PF00560 LRR_1: Leucine Rich R 95.9 0.0033 7.1E-08 30.6 0.6 21 48-70 1-21 (22)
52 KOG3207|consensus 95.7 0.0029 6.3E-08 54.0 0.3 76 31-107 230-313 (505)
53 PF13504 LRR_7: Leucine rich r 95.6 0.0081 1.7E-07 27.3 1.3 16 73-88 2-17 (17)
54 KOG0531|consensus 95.6 0.0032 6.8E-08 54.3 -0.2 85 16-109 115-200 (414)
55 KOG2739|consensus 95.5 0.0088 1.9E-07 47.7 2.3 83 16-107 40-128 (260)
56 KOG3207|consensus 95.5 0.0079 1.7E-07 51.4 1.8 77 31-108 254-339 (505)
57 PF13306 LRR_5: Leucine rich r 95.4 0.029 6.4E-07 39.5 4.6 65 37-104 2-67 (129)
58 KOG2123|consensus 94.3 0.0016 3.4E-08 52.7 -4.9 71 32-107 28-100 (388)
59 PF01463 LRRCT: Leucine rich r 94.3 0.017 3.6E-07 29.0 0.5 24 134-161 2-25 (25)
60 smart00370 LRR Leucine-rich re 93.9 0.039 8.5E-07 27.7 1.5 21 71-91 1-21 (26)
61 smart00369 LRR_TYP Leucine-ric 93.9 0.039 8.5E-07 27.7 1.5 21 71-91 1-21 (26)
62 KOG2982|consensus 93.6 0.054 1.2E-06 44.6 2.5 74 31-105 79-156 (418)
63 PF01102 Glycophorin_A: Glycop 92.7 0.22 4.8E-06 35.4 4.1 29 175-203 66-94 (122)
64 KOG4658|consensus 91.3 0.091 2E-06 49.7 1.2 85 18-105 567-652 (889)
65 KOG0473|consensus 90.5 0.0096 2.1E-07 47.2 -5.0 74 31-107 50-123 (326)
66 PF02439 Adeno_E3_CR2: Adenovi 90.4 0.83 1.8E-05 25.2 4.0 13 186-198 18-30 (38)
67 smart00364 LRR_BAC Leucine-ric 89.4 0.27 5.8E-06 24.9 1.4 18 72-89 2-19 (26)
68 KOG3665|consensus 89.1 0.35 7.5E-06 44.6 3.0 82 18-107 172-262 (699)
69 smart00365 LRR_SD22 Leucine-ri 88.8 0.27 5.9E-06 24.9 1.2 17 47-64 2-18 (26)
70 PF05393 Hum_adeno_E3A: Human 88.2 1.1 2.4E-05 29.6 4.1 25 185-209 42-66 (94)
71 KOG2982|consensus 87.9 0.3 6.5E-06 40.3 1.6 79 32-111 54-139 (418)
72 KOG1909|consensus 86.6 0.22 4.9E-06 41.6 0.2 73 31-104 165-250 (382)
73 PRK15386 type III secretion pr 86.5 1.2 2.5E-05 38.6 4.5 58 21-89 54-112 (426)
74 KOG2123|consensus 86.1 0.067 1.5E-06 43.6 -2.9 53 31-86 49-102 (388)
75 KOG2739|consensus 86.0 0.56 1.2E-05 37.6 2.1 62 44-108 40-104 (260)
76 KOG3665|consensus 85.2 0.35 7.6E-06 44.6 0.8 59 44-104 145-204 (699)
77 PF05568 ASFV_J13L: African sw 82.6 1.6 3.5E-05 31.8 3.1 44 159-204 16-59 (189)
78 PF06679 DUF1180: Protein of u 80.0 2.4 5.2E-05 31.7 3.4 29 181-209 101-129 (163)
79 COG5238 RNA1 Ran GTPase-activa 78.5 0.84 1.8E-05 37.3 0.6 37 71-107 91-132 (388)
80 KOG3763|consensus 77.8 1.1 2.3E-05 39.8 1.1 64 44-108 215-283 (585)
81 PF01299 Lamp: Lysosome-associ 76.5 2.2 4.9E-05 35.3 2.6 17 182-198 279-295 (306)
82 TIGR00864 PCC polycystin catio 76.5 1.6 3.4E-05 45.8 1.9 32 30-62 2-33 (2740)
83 PF13516 LRR_6: Leucine Rich r 76.2 1.3 2.7E-05 21.5 0.7 14 47-61 2-15 (24)
84 PRK15386 type III secretion pr 75.3 3.3 7.2E-05 35.9 3.3 56 43-105 48-104 (426)
85 smart00368 LRR_RI Leucine rich 74.3 2.7 5.8E-05 21.4 1.6 11 74-84 4-14 (28)
86 PF08114 PMP1_2: ATPase proteo 73.3 9.2 0.0002 21.5 3.6 27 179-205 12-38 (43)
87 KOG1909|consensus 72.0 1.4 3.1E-05 37.0 0.3 44 41-85 207-254 (382)
88 TIGR01478 STEVOR variant surfa 71.6 5.5 0.00012 32.4 3.6 8 108-115 176-183 (295)
89 PTZ00370 STEVOR; Provisional 70.1 5.6 0.00012 32.5 3.3 8 108-115 176-183 (296)
90 PF12191 stn_TNFRSF12A: Tumour 68.5 1.6 3.5E-05 30.9 0.0 20 189-208 92-111 (129)
91 COG5238 RNA1 Ran GTPase-activa 68.5 3.1 6.6E-05 34.2 1.5 75 42-117 87-179 (388)
92 PF09577 Spore_YpjB: Sporulati 65.3 12 0.00026 29.8 4.3 33 173-205 198-230 (232)
93 PF08374 Protocadherin: Protoc 61.6 4.5 9.8E-05 31.5 1.3 14 184-197 48-61 (221)
94 PF06024 DUF912: Nucleopolyhed 59.2 3 6.4E-05 28.6 -0.1 22 177-198 65-86 (101)
95 PF01102 Glycophorin_A: Glycop 58.2 19 0.00041 25.6 3.9 27 179-205 67-93 (122)
96 TIGR01477 RIFIN variant surfac 56.6 12 0.00026 31.6 3.0 25 179-203 318-342 (353)
97 PTZ00046 rifin; Provisional 56.3 12 0.00026 31.7 3.0 25 179-203 323-347 (358)
98 PF04971 Lysis_S: Lysis protei 55.8 21 0.00045 22.5 3.3 30 175-204 33-62 (68)
99 PF15106 TMEM156: TMEM156 prot 55.5 18 0.00039 28.2 3.6 34 173-206 174-207 (226)
100 TIGR02878 spore_ypjB sporulati 54.8 15 0.00033 29.0 3.2 35 171-205 197-231 (233)
101 PF14991 MLANA: Protein melan- 54.1 3.2 6.9E-05 28.9 -0.6 27 179-205 30-56 (118)
102 PF11857 DUF3377: Domain of un 53.2 4.5 9.8E-05 25.9 0.0 29 181-209 37-65 (74)
103 PF06365 CD34_antigen: CD34/Po 53.1 20 0.00043 27.9 3.5 16 185-200 112-127 (202)
104 PF10661 EssA: WXG100 protein 51.9 27 0.00059 25.6 3.9 22 179-200 122-143 (145)
105 PRK01844 hypothetical protein; 51.7 40 0.00087 21.5 4.1 20 179-198 7-26 (72)
106 PF05393 Hum_adeno_E3A: Human 51.1 31 0.00066 22.9 3.6 29 175-203 35-63 (94)
107 PHA03099 epidermal growth fact 50.4 22 0.00048 25.4 3.1 24 179-202 105-128 (139)
108 PF13260 DUF4051: Protein of u 48.5 29 0.00063 20.2 2.8 13 190-202 13-25 (54)
109 KOG3763|consensus 47.8 9.6 0.00021 34.1 1.2 65 16-86 215-284 (585)
110 PF02009 Rifin_STEVOR: Rifin/s 47.4 23 0.0005 29.3 3.3 26 183-208 262-288 (299)
111 KOG0473|consensus 46.6 0.35 7.6E-06 38.6 -7.0 73 33-107 28-100 (326)
112 PF02480 Herpes_gE: Alphaherpe 46.3 6.7 0.00014 34.3 0.0 19 185-203 363-381 (439)
113 COG3763 Uncharacterized protei 46.1 55 0.0012 20.8 4.1 23 178-200 6-28 (71)
114 smart00367 LRR_CC Leucine-rich 45.5 15 0.00033 17.9 1.3 11 47-57 2-12 (26)
115 KOG3864|consensus 45.3 3.4 7.3E-05 32.2 -1.7 81 29-109 107-190 (221)
116 KOG2120|consensus 43.3 9.9 0.00022 31.7 0.6 58 45-104 311-372 (419)
117 PF14610 DUF4448: Protein of u 42.4 6.6 0.00014 30.0 -0.5 10 59-68 39-48 (189)
118 PF10577 UPF0560: Uncharacteri 41.4 26 0.00057 32.8 3.0 22 183-204 284-305 (807)
119 PF07010 Endomucin: Endomucin; 40.1 40 0.00087 26.7 3.4 22 178-199 195-216 (259)
120 TIGR01478 STEVOR variant surfa 40.0 41 0.00089 27.6 3.6 8 106-113 142-149 (295)
121 PRK00523 hypothetical protein; 40.0 76 0.0017 20.3 4.1 16 183-198 12-27 (72)
122 PF06679 DUF1180: Protein of u 38.6 48 0.001 24.8 3.5 26 181-206 98-123 (163)
123 PF04689 S1FA: DNA binding pro 38.3 62 0.0014 20.1 3.3 29 171-199 11-39 (69)
124 PHA02902 putative IMV membrane 36.8 65 0.0014 20.0 3.3 17 184-200 11-27 (70)
125 KOG1219|consensus 36.8 62 0.0013 34.8 4.8 14 100-113 3917-3930(4289)
126 PF15298 AJAP1_PANP_C: AJAP1/P 36.3 20 0.00044 27.6 1.2 26 181-206 108-133 (205)
127 PF05283 MGC-24: Multi-glycosy 35.7 48 0.001 25.4 3.2 27 174-200 158-184 (186)
128 PF15102 TMEM154: TMEM154 prot 35.3 11 0.00024 27.5 -0.2 6 177-182 59-64 (146)
129 PF12191 stn_TNFRSF12A: Tumour 35.2 12 0.00027 26.5 -0.0 20 184-203 90-109 (129)
130 PF05961 Chordopox_A13L: Chord 34.3 75 0.0016 20.0 3.3 17 185-201 11-27 (68)
131 PF15345 TMEM51: Transmembrane 33.6 38 0.00082 26.9 2.4 12 194-205 77-88 (233)
132 PF05337 CSF-1: Macrophage col 33.5 14 0.0003 30.0 0.0 25 181-205 232-256 (285)
133 PF03229 Alpha_GJ: Alphavirus 33.3 98 0.0021 21.7 4.1 12 197-208 111-122 (126)
134 COG4736 CcoQ Cbb3-type cytochr 33.1 66 0.0014 19.8 2.9 6 193-198 26-31 (60)
135 PF02060 ISK_Channel: Slow vol 33.0 1E+02 0.0022 22.1 4.2 28 178-205 48-75 (129)
136 COG2149 Predicted membrane pro 30.9 1.3E+02 0.0029 21.2 4.4 30 179-208 61-90 (120)
137 PHA03049 IMV membrane protein; 30.3 91 0.002 19.5 3.2 16 185-200 11-26 (68)
138 PF15065 NCU-G1: Lysosomal tra 29.6 20 0.00043 30.4 0.3 29 177-205 322-350 (350)
139 PF07213 DAP10: DAP10 membrane 28.7 93 0.002 20.3 3.2 16 188-203 48-63 (79)
140 KOG3864|consensus 28.5 23 0.00049 27.8 0.4 69 48-119 102-175 (221)
141 PF11157 DUF2937: Protein of u 27.7 98 0.0021 23.2 3.7 25 181-205 142-166 (167)
142 PF05454 DAG1: Dystroglycan (D 27.6 20 0.00044 29.5 0.0 22 179-200 154-175 (290)
143 KOG1026|consensus 27.5 42 0.00092 31.5 2.0 75 45-120 83-160 (774)
144 KOG1094|consensus 27.4 1.4E+02 0.003 27.6 5.0 21 177-197 394-414 (807)
145 KOG2120|consensus 27.0 7.8 0.00017 32.3 -2.4 15 92-106 310-324 (419)
146 PHA03240 envelope glycoprotein 26.7 92 0.002 24.5 3.4 8 194-201 229-236 (258)
147 PF11694 DUF3290: Protein of u 26.4 75 0.0016 23.4 2.8 23 178-200 20-42 (149)
148 PF05510 Sarcoglycan_2: Sarcog 25.9 84 0.0018 27.1 3.4 23 178-200 289-311 (386)
149 PF06809 NPDC1: Neural prolife 25.2 29 0.00063 28.8 0.5 26 179-204 204-229 (341)
150 KOG3839|consensus 24.9 18 0.0004 30.2 -0.7 31 179-209 321-351 (351)
151 PF14851 FAM176: FAM176 family 24.2 69 0.0015 23.7 2.3 19 179-197 29-47 (153)
152 PF11884 DUF3404: Domain of un 23.4 2.4E+02 0.0052 22.9 5.4 8 158-165 211-218 (262)
153 PHA03265 envelope glycoprotein 22.7 39 0.00086 28.5 0.8 8 113-120 251-258 (402)
154 PF15145 DUF4577: Domain of un 22.5 2.1E+02 0.0045 20.0 4.1 18 180-197 69-86 (128)
155 PHA02681 ORF089 virion membran 22.0 1.6E+02 0.0035 19.3 3.4 18 183-200 10-27 (92)
156 PF02480 Herpes_gE: Alphaherpe 22.0 30 0.00065 30.3 0.0 27 179-205 360-386 (439)
157 PF03302 VSP: Giardia variant- 21.6 94 0.002 26.8 2.9 10 169-178 363-372 (397)
158 PF15099 PIRT: Phosphoinositid 21.1 82 0.0018 22.5 2.0 15 192-206 100-114 (129)
159 PF08999 SP_C-Propep: Surfacta 21.0 1.9E+02 0.0042 18.9 3.5 12 195-206 53-64 (93)
160 PF11980 DUF3481: Domain of un 20.3 1.5E+02 0.0032 19.6 2.9 15 188-202 31-45 (87)
No 1
>KOG4237|consensus
Probab=99.81 E-value=2.3e-20 Score=153.21 Aligned_cols=140 Identities=23% Similarity=0.366 Sum_probs=121.4
Q ss_pred CcccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCC
Q psy14513 16 DTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDW 94 (209)
Q Consensus 16 ~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l 94 (209)
..|..|++|..+ .+++|.|+.|.+++|.++..+++|+|..| +|+.+...+|.++..|+.|+|.+|+++.+.+.. ..+
T Consensus 268 ~cf~~L~~L~~l-nlsnN~i~~i~~~aFe~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~ 345 (498)
T KOG4237|consen 268 KCFKKLPNLRKL-NLSNNKITRIEDGAFEGAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTL 345 (498)
T ss_pred HHHhhcccceEe-ccCCCccchhhhhhhcchhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecCCeeEEEeccccccc
Confidence 334444444332 33999999999999999999999999999 999999999999999999999999999987777 889
Q ss_pred CCccEEEeeCCCCccccCcHhHHHHHHhcCCCCCCCCCccccCCCCCCCCcccccCCCCCcccCccCCCce
Q psy14513 95 DSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNPLLSHISGECVKGAL 165 (209)
Q Consensus 95 ~~L~~l~l~~Np~~C~C~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~l~g~~l~~~~~~~~~~~~C~~~~~ 165 (209)
.+|.++.+-.|||.|+|.+.|+.+|++++.. ..+..|..|.-+++.++.++.. .++.|..+.+
T Consensus 346 ~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~-----~~~~~Cq~p~~~~~~~~~dv~~---~~~~c~~~ee 408 (498)
T KOG4237|consen 346 FSLSTLNLLSNPFNCNCRLAWLGEWLRKKSV-----VGNPRCQSPGFVRQIPISDVAF---GDFRCGGPEE 408 (498)
T ss_pred ceeeeeehccCcccCccchHHHHHHHhhCCC-----CCCCCCCCCchhccccchhccc---cccccCCccc
Confidence 9999999999999999999999999965542 3568999999999999999997 8888875433
No 2
>KOG4194|consensus
Probab=99.66 E-value=2e-17 Score=141.85 Aligned_cols=127 Identities=22% Similarity=0.450 Sum_probs=99.8
Q ss_pred ccccccccCchhhcCCcccceecccccccccccCc---cccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCCC
Q psy14513 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHP---YSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSNP 106 (209)
Q Consensus 31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~---~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np 106 (209)
+.|.|+.+..++|.++.+|++|||++| .++.... .+|.++++|+.|++.+|++++++... ..++.|++|+|.+|+
T Consensus 349 s~Nsi~~l~e~af~~lssL~~LdLr~N-~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 349 SHNSIDHLAEGAFVGLSSLHKLDLRSN-ELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred cccchHHHHhhHHHHhhhhhhhcCcCC-eEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCc
Confidence 677777777777777777777777777 6666433 35777888888888888888888776 888999999999995
Q ss_pred -----------------------CccccCcHhHHHHHHhcCCCCCCCCCccccCCCCCCCCcccccCCCCCcccCccCCC
Q psy14513 107 -----------------------WTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNPLLSHISGECVKG 163 (209)
Q Consensus 107 -----------------------~~C~C~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~l~g~~l~~~~~~~~~~~~C~~~ 163 (209)
|.|||++.|+.+|+..+..+ ......|+.|+.+.|+.+..++. .++.|.+.
T Consensus 428 iaSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl~qWl~~~~lq---~sv~a~CayPe~Lad~~i~svd~---~~lvC~Ds 501 (873)
T KOG4194|consen 428 IASIQPNAFEPMELKELVMNSSSFLCDCQLKWLAQWLYRRKLQ---SSVIAKCAYPEPLADQSIVSVDT---ANLVCDDS 501 (873)
T ss_pred ceeecccccccchhhhhhhcccceEEeccHHHHHHHHHhcccc---cceeeeccCCcccccceeEeech---hhceecCC
Confidence 47999999999999433322 33557999999999999999998 89999754
Q ss_pred c
Q psy14513 164 A 164 (209)
Q Consensus 164 ~ 164 (209)
.
T Consensus 502 p 502 (873)
T KOG4194|consen 502 P 502 (873)
T ss_pred C
Confidence 3
No 3
>KOG4237|consensus
Probab=99.56 E-value=3e-16 Score=129.19 Aligned_cols=186 Identities=18% Similarity=0.145 Sum_probs=134.7
Q ss_pred CCCCCcccccCCcccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccC-Cc
Q psy14513 5 QNSGSRQDISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINN-NA 83 (209)
Q Consensus 5 ~~~~~~~~~~~~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~-N~ 83 (209)
....-|.++|.++.. +.+ ..|.|+.||+++|..+++|++|||++| .|+.|.|++|+++.++..|.+-+ |+
T Consensus 57 GL~eVP~~LP~~tve----irL----dqN~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~Nk 127 (498)
T KOG4237|consen 57 GLTEVPANLPPETVE----IRL----DQNQISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNK 127 (498)
T ss_pred CcccCcccCCCcceE----EEe----ccCCcccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCc
Confidence 446789999999977 887 899999999999999999999999999 99999999999999976665555 99
Q ss_pred CcccCCCC-CCCCCccEEEeeCCCCccccCcHhHHHHH-HhcCCCCCCCCCccccC-CCCCC-CCcccccCCCCCcccCc
Q psy14513 84 ITSLPHEL-GDWDSLEVLDIQSNPWTCDCSIQWLIDYV-AKRQRTDPELNYNLHCS-QPVKF-SNVHLLSNPLLSHISGE 159 (209)
Q Consensus 84 l~~l~~~~-~~l~~L~~l~l~~Np~~C~C~~~~~~~~~-~~~~~~~~~~~~~~~C~-~p~~l-~g~~l~~~~~~~~~~~~ 159 (209)
|+.+|.+. +.+.+++.|. .|+++|+|-......-+ .......++......|. +-..+ .+++++--. +.+.
T Consensus 128 I~~l~k~~F~gL~slqrLl--lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~----np~i 201 (498)
T KOG4237|consen 128 ITDLPKGAFGGLSSLQRLL--LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQ----NPFI 201 (498)
T ss_pred hhhhhhhHhhhHHHHHHHh--cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhc----Cccc
Confidence 99999988 8888877664 58899999877766544 22222223444455564 22222 233333322 3445
Q ss_pred cCCCceeeeeccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCC
Q psy14513 160 CVKGALVISQLSTQFYKLYPLLFIMTLLLITLVVYLICMSYKYARNHVPY 209 (209)
Q Consensus 160 C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 209 (209)
|.-.... -+.+....++...++-++..+.+++.|.++..+|++..|
T Consensus 202 cdCnL~w----la~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~ 247 (498)
T KOG4237|consen 202 CDCNLPW----LADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCS 247 (498)
T ss_pred cccccch----hhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhh
Confidence 5433221 222333446677778899999999999999999998765
No 4
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=99.23 E-value=1.2e-11 Score=121.36 Aligned_cols=86 Identities=22% Similarity=0.460 Sum_probs=72.6
Q ss_pred eccCCcCcccCCCC-CCCCCccEEEeeCCCCccccCcHhHHHHHHhcCCCCCCCCCccccCCCCCCCCcccccCCCCCcc
Q psy14513 78 YINNNAITSLPHEL-GDWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNPLLSHI 156 (209)
Q Consensus 78 ~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np~~C~C~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~l~g~~l~~~~~~~~~ 156 (209)
||++|+|+.++... ..+++|+.|+|++|||+|||++.||..|+++.... ......+.|..|..++|+++.++.. .
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~~~v~-v~~~~~i~CasP~~LrG~~L~~l~~---~ 76 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVK-VRQPEAALCAGPGALAGQPLLGIPL---L 76 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHHhcCcc-ccCCcccCCCCChHHCCCCcccCCc---c
Confidence 68899999999888 88999999999999999999999999999554433 3344678999999999999999987 6
Q ss_pred cCccCCCceee
Q psy14513 157 SGECVKGALVI 167 (209)
Q Consensus 157 ~~~C~~~~~~~ 167 (209)
++.|..+....
T Consensus 77 d~~C~~~y~~C 87 (2740)
T TIGR00864 77 DSGCDEEYVAC 87 (2740)
T ss_pred cCCCCCcceee
Confidence 77888766543
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.17 E-value=1.6e-10 Score=108.83 Aligned_cols=82 Identities=21% Similarity=0.275 Sum_probs=64.4
Q ss_pred ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcc-cCCCCCCCCCccEEEeeCCCCcc
Q psy14513 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITS-LPHELGDWDSLEVLDIQSNPWTC 109 (209)
Q Consensus 31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~l~l~~Np~~C 109 (209)
++|.+....+..|.++++|+.|++++| .++...|..|.++++|+.|+|++|++++ +|..+..+++|+++++++|++.+
T Consensus 507 s~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 507 SENKLSGEIPDELSSCKKLVSLDLSHN-QLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred cCCcceeeCChHHcCccCCCEEECCCC-cccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence 778887777777888888888888888 8887777778778888888888888875 56555777888888888888887
Q ss_pred ccCc
Q psy14513 110 DCSI 113 (209)
Q Consensus 110 ~C~~ 113 (209)
..+.
T Consensus 586 ~~p~ 589 (968)
T PLN00113 586 SLPS 589 (968)
T ss_pred eCCC
Confidence 6664
No 6
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.16 E-value=2.4e-11 Score=76.22 Aligned_cols=53 Identities=38% Similarity=0.473 Sum_probs=38.2
Q ss_pred ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcC
Q psy14513 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAI 84 (209)
Q Consensus 31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l 84 (209)
++|.|+.+++++|.++++|++|++++| .++.+++++|.++++|+++++++|++
T Consensus 9 ~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 9 SNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSSB
T ss_pred CCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 667777777777777777777777777 77777777777777777777777654
No 7
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.13 E-value=5.4e-11 Score=74.57 Aligned_cols=60 Identities=37% Similarity=0.463 Sum_probs=57.0
Q ss_pred cccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCCCC
Q psy14513 47 LNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSNPW 107 (209)
Q Consensus 47 ~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np~ 107 (209)
++|++|++++| .++.+++++|.++++|++|++++|+++.+++.. ..+++|+++++++|++
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 57899999999 999999999999999999999999999999877 9999999999999975
No 8
>PLN03150 hypothetical protein; Provisional
Probab=99.04 E-value=7.6e-10 Score=99.57 Aligned_cols=87 Identities=24% Similarity=0.302 Sum_probs=76.5
Q ss_pred cceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcc-cCCCCCCCCCccE
Q psy14513 21 IMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITS-LPHELGDWDSLEV 99 (209)
Q Consensus 21 l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~ 99 (209)
+..|.+ ++|.+....+..+..+++|+.|+|++| .+.+..|..+..+++|+.|+|++|+++. +|..+..+++|+.
T Consensus 420 v~~L~L----~~n~L~g~ip~~i~~L~~L~~L~Ls~N-~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~ 494 (623)
T PLN03150 420 IDGLGL----DNQGLRGFIPNDISKLRHLQSINLSGN-SIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRI 494 (623)
T ss_pred EEEEEC----CCCCccccCCHHHhCCCCCCEEECCCC-cccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCE
Confidence 344555 899999888889999999999999999 9998777778889999999999999997 6666699999999
Q ss_pred EEeeCCCCccccC
Q psy14513 100 LDIQSNPWTCDCS 112 (209)
Q Consensus 100 l~l~~Np~~C~C~ 112 (209)
|++++|.+.+.-+
T Consensus 495 L~Ls~N~l~g~iP 507 (623)
T PLN03150 495 LNLNGNSLSGRVP 507 (623)
T ss_pred EECcCCcccccCC
Confidence 9999999998655
No 9
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.80 E-value=2.9e-09 Score=80.66 Aligned_cols=87 Identities=24% Similarity=0.285 Sum_probs=43.1
Q ss_pred cccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC--CCCCC
Q psy14513 19 YTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL--GDWDS 96 (209)
Q Consensus 19 ~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~--~~l~~ 96 (209)
..+..|++ ++|.|+.++ .+..++.|+.|++++| +|+.+.+.....+++|+.|++++|++..+..-. ..+++
T Consensus 42 ~~L~~L~L----s~N~I~~l~--~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~ 114 (175)
T PF14580_consen 42 DKLEVLDL----SNNQITKLE--GLPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPK 114 (175)
T ss_dssp TT--EEE-----TTS--S--T--T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT
T ss_pred cCCCEEEC----CCCCCcccc--CccChhhhhhcccCCC-CCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCC
Confidence 44566666 999999997 4678999999999999 999997654345789999999999999875533 78999
Q ss_pred ccEEEeeCCCCccccC
Q psy14513 97 LEVLDIQSNPWTCDCS 112 (209)
Q Consensus 97 L~~l~l~~Np~~C~C~ 112 (209)
|+.|++.+||+.-...
T Consensus 115 L~~L~L~~NPv~~~~~ 130 (175)
T PF14580_consen 115 LRVLSLEGNPVCEKKN 130 (175)
T ss_dssp --EEE-TT-GGGGSTT
T ss_pred cceeeccCCcccchhh
Confidence 9999999999954433
No 10
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.74 E-value=2e-08 Score=94.72 Aligned_cols=86 Identities=17% Similarity=0.258 Sum_probs=74.4
Q ss_pred ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcc-cCCCCCCCCCcc
Q psy14513 20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITS-LPHELGDWDSLE 98 (209)
Q Consensus 20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~ 98 (209)
++..|++ ++|.++...+..|.++++|+.|++++| .+....|..|..+.+|+.|++++|.++. +|..+..+++|+
T Consensus 476 ~L~~L~l----s~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 550 (968)
T PLN00113 476 RLENLDL----SRNQFSGAVPRKLGSLSELMQLKLSEN-KLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLS 550 (968)
T ss_pred cceEEEC----cCCccCCccChhhhhhhccCEEECcCC-cceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCC
Confidence 3445555 899999888889999999999999999 9998888888889999999999999998 454458899999
Q ss_pred EEEeeCCCCccc
Q psy14513 99 VLDIQSNPWTCD 110 (209)
Q Consensus 99 ~l~l~~Np~~C~ 110 (209)
.|++++|.+...
T Consensus 551 ~L~Ls~N~l~~~ 562 (968)
T PLN00113 551 QLDLSQNQLSGE 562 (968)
T ss_pred EEECCCCccccc
Confidence 999999998754
No 11
>smart00082 LRRCT Leucine rich repeat C-terminal domain.
Probab=98.71 E-value=7.8e-09 Score=62.21 Aligned_cols=51 Identities=25% Similarity=0.615 Sum_probs=39.3
Q ss_pred CCCccccCcHhHHHHHHhcCCCCCCCCCccccCCCCCCCCcccccCCCCCcccCccC
Q psy14513 105 NPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNPLLSHISGECV 161 (209)
Q Consensus 105 Np~~C~C~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~l~g~~l~~~~~~~~~~~~C~ 161 (209)
|||.|||++.|+..|+.+ .........+.|.+|+.++ .++..+.. .++.|.
T Consensus 1 NP~~CdC~l~~~~~w~~~--~~~~~~~~~~~C~~P~~~~-~~l~~~~~---~~~~C~ 51 (51)
T smart00082 1 NPFICDCELRWLLRWLQA--NEHLQDPVSLRCASPSSLR-GPLLELLH---SEFKCP 51 (51)
T ss_pred CCccCcCCchHHHHHHHh--CCccCCCCCCEeCCcHHHH-hHHHcCCH---hhCCCc
Confidence 899999999999999955 2223445689999999998 56777765 566663
No 12
>KOG0444|consensus
Probab=98.63 E-value=4.1e-09 Score=92.36 Aligned_cols=96 Identities=24% Similarity=0.299 Sum_probs=81.5
Q ss_pred CCCCCcccccCCcccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcC
Q psy14513 5 QNSGSRQDISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAI 84 (209)
Q Consensus 5 ~~~~~~~~~~~~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l 84 (209)
+++.-|++|+.-..+ +.|++ |+|++..+|.+ +....++-.|+||+| .|++|+...|.++.-|-+||||+|++
T Consensus 91 KnsGiP~diF~l~dL--t~lDL----ShNqL~EvP~~-LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~NrL 162 (1255)
T KOG0444|consen 91 KNSGIPTDIFRLKDL--TILDL----SHNQLREVPTN-LEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNRL 162 (1255)
T ss_pred ccCCCCchhcccccc--eeeec----chhhhhhcchh-hhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccchh
Confidence 456667776655443 33555 99999999864 466788999999999 99999999999999999999999999
Q ss_pred cccCCCCCCCCCccEEEeeCCCCc
Q psy14513 85 TSLPHELGDWDSLEVLDIQSNPWT 108 (209)
Q Consensus 85 ~~l~~~~~~l~~L~~l~l~~Np~~ 108 (209)
..+|+++..+..|++|.|++||+.
T Consensus 163 e~LPPQ~RRL~~LqtL~Ls~NPL~ 186 (1255)
T KOG0444|consen 163 EMLPPQIRRLSMLQTLKLSNNPLN 186 (1255)
T ss_pred hhcCHHHHHHhhhhhhhcCCChhh
Confidence 999999999999999999999984
No 13
>PLN03150 hypothetical protein; Provisional
Probab=98.58 E-value=7.7e-08 Score=86.72 Aligned_cols=87 Identities=17% Similarity=0.281 Sum_probs=74.0
Q ss_pred ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcc-cCCCC-CCCCCc
Q psy14513 20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITS-LPHEL-GDWDSL 97 (209)
Q Consensus 20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~-l~~~~-~~l~~L 97 (209)
+|..|.+ ++|.+.+..+..|..+++|+.|+|++| .++...|..+..+++|+.|+|++|+++. +|..+ .....+
T Consensus 443 ~L~~L~L----s~N~l~g~iP~~~~~l~~L~~LdLs~N-~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~ 517 (623)
T PLN03150 443 HLQSINL----SGNSIRGNIPPSLGSITSLEVLDLSYN-SFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHR 517 (623)
T ss_pred CCCEEEC----CCCcccCcCChHHhCCCCCCEEECCCC-CCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccC
Confidence 3455555 899999888888999999999999999 9998888888999999999999999996 77766 444567
Q ss_pred cEEEeeCCCCcccc
Q psy14513 98 EVLDIQSNPWTCDC 111 (209)
Q Consensus 98 ~~l~l~~Np~~C~C 111 (209)
..+++.+|+..|.+
T Consensus 518 ~~l~~~~N~~lc~~ 531 (623)
T PLN03150 518 ASFNFTDNAGLCGI 531 (623)
T ss_pred ceEEecCCccccCC
Confidence 78999999998853
No 14
>KOG4194|consensus
Probab=98.55 E-value=3.6e-08 Score=85.77 Aligned_cols=51 Identities=25% Similarity=0.320 Sum_probs=20.5
Q ss_pred ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCC
Q psy14513 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNN 82 (209)
Q Consensus 31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N 82 (209)
++|.|+.+..+.|.++.+|..|.|+.| +++.+++..|+.++.|+.|+|..|
T Consensus 181 a~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN 231 (873)
T KOG4194|consen 181 ASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRN 231 (873)
T ss_pred ccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhhhhcccc
Confidence 444444444444444444444444444 444444444433333333333333
No 15
>KOG0472|consensus
Probab=98.41 E-value=6.7e-08 Score=80.80 Aligned_cols=88 Identities=26% Similarity=0.330 Sum_probs=73.3
Q ss_pred ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccEEEeeCCCCc--
Q psy14513 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWT-- 108 (209)
Q Consensus 31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~l~~Np~~-- 108 (209)
+.|+|..++.+...+|+++..|||.+| +++..+.+.-. +.+|.+||+|+|.++++|...+++ .|+.+.+.|||+.
T Consensus 236 g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~cl-LrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTi 312 (565)
T KOG0472|consen 236 GENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICL-LRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTI 312 (565)
T ss_pred cccHHHhhHHHHhcccccceeeecccc-ccccCchHHHH-hhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHH
Confidence 678888888888888999999999999 99888777654 777999999999999999888888 8999999999984
Q ss_pred ----cccCcHhHHHHHH
Q psy14513 109 ----CDCSIQWLIDYVA 121 (209)
Q Consensus 109 ----C~C~~~~~~~~~~ 121 (209)
-.|....+..+++
T Consensus 313 Rr~ii~~gT~~vLKyLr 329 (565)
T KOG0472|consen 313 RREIISKGTQEVLKYLR 329 (565)
T ss_pred HHHHHcccHHHHHHHHH
Confidence 3466666666663
No 16
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.30 E-value=1.6e-07 Score=71.19 Aligned_cols=81 Identities=21% Similarity=0.248 Sum_probs=30.8
Q ss_pred cceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccE
Q psy14513 21 IMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEV 99 (209)
Q Consensus 21 l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~ 99 (209)
+..|++ ++|.|+.|..-. ..+.+|+.|++++| .|+.++. +..++.|+.|++++|+++++...+ ..+++|+.
T Consensus 21 ~~~L~L----~~n~I~~Ie~L~-~~l~~L~~L~Ls~N-~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 21 LRELNL----RGNQISTIENLG-ATLDKLEVLDLSNN-QITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp -------------------S---TT-TT--EEE-TTS---S--TT------TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred cccccc----cccccccccchh-hhhcCCCEEECCCC-CCccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 455677 999999997422 25789999999999 9999874 566899999999999999987555 56899999
Q ss_pred EEeeCCCCcc
Q psy14513 100 LDIQSNPWTC 109 (209)
Q Consensus 100 l~l~~Np~~C 109 (209)
|++++|.+.-
T Consensus 93 L~L~~N~I~~ 102 (175)
T PF14580_consen 93 LYLSNNKISD 102 (175)
T ss_dssp EE-TTS---S
T ss_pred EECcCCcCCC
Confidence 9999998864
No 17
>KOG0617|consensus
Probab=98.28 E-value=1.5e-07 Score=70.51 Aligned_cols=82 Identities=23% Similarity=0.323 Sum_probs=71.3
Q ss_pred ceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccEEE
Q psy14513 22 MKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLD 101 (209)
Q Consensus 22 ~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~ 101 (209)
+.|.+ |+|.++.++++. ..|.+|+.|++.+| +|+.++...- .++.|++|++..|++..+|.++++++.|+.||
T Consensus 36 TrLtL----SHNKl~~vppni-a~l~nlevln~~nn-qie~lp~~is-sl~klr~lnvgmnrl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 36 TRLTL----SHNKLTVVPPNI-AELKNLEVLNLSNN-QIEELPTSIS-SLPKLRILNVGMNRLNILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhc----ccCceeecCCcH-HHhhhhhhhhcccc-hhhhcChhhh-hchhhhheecchhhhhcCccccCCCchhhhhh
Confidence 34555 899999999875 56899999999999 9999988754 48899999999999999999999999999999
Q ss_pred eeCCCCccc
Q psy14513 102 IQSNPWTCD 110 (209)
Q Consensus 102 l~~Np~~C~ 110 (209)
+..|.+.-.
T Consensus 109 ltynnl~e~ 117 (264)
T KOG0617|consen 109 LTYNNLNEN 117 (264)
T ss_pred ccccccccc
Confidence 998887654
No 18
>KOG0444|consensus
Probab=98.26 E-value=1.3e-07 Score=83.25 Aligned_cols=48 Identities=19% Similarity=0.168 Sum_probs=25.6
Q ss_pred CCcccccCCcccccceeccccccccccccccCchhhcCCcccceeccccc
Q psy14513 8 GSRQDISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFN 57 (209)
Q Consensus 8 ~~~~~~~~~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n 57 (209)
+++.+||+.-|.+|+.|..| ++|+|.+..+||.. +.|.+|++|+|++|
T Consensus 136 N~IetIPn~lfinLtDLLfL-DLS~NrLe~LPPQ~-RRL~~LqtL~Ls~N 183 (1255)
T KOG0444|consen 136 NNIETIPNSLFINLTDLLFL-DLSNNRLEMLPPQI-RRLSMLQTLKLSNN 183 (1255)
T ss_pred CccccCCchHHHhhHhHhhh-ccccchhhhcCHHH-HHHhhhhhhhcCCC
Confidence 34455555555555544332 44556666655543 44555555555555
No 19
>KOG0472|consensus
Probab=98.14 E-value=7.1e-07 Score=74.80 Aligned_cols=82 Identities=27% Similarity=0.509 Sum_probs=63.9
Q ss_pred cceeccccccccccccccCchhhcCCcccceecccccccccc-----------------------cCccccCCCCCcCEE
Q psy14513 21 IMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTF-----------------------IHPYSFNNDWSLKEF 77 (209)
Q Consensus 21 l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~-----------------------i~~~~f~~l~~L~~L 77 (209)
++.|++ ++|-+..+|-+. +.+..|+.++++.| ++.. ++++...++..|..|
T Consensus 437 Lt~L~L----~NN~Ln~LP~e~-~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tL 510 (565)
T KOG0472|consen 437 LTFLDL----SNNLLNDLPEEM-GSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTL 510 (565)
T ss_pred ceeeec----ccchhhhcchhh-hhhhhhheeccccc-ccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhccee
Confidence 344666 777777777544 45666777777776 5544 445545567779999
Q ss_pred eccCCcCcccCCCCCCCCCccEEEeeCCCCc
Q psy14513 78 YINNNAITSLPHELGDWDSLEVLDIQSNPWT 108 (209)
Q Consensus 78 ~Ls~N~l~~l~~~~~~l~~L~~l~l~~Np~~ 108 (209)
||.+|.+..+|+.++++++|++|++.||||.
T Consensus 511 DL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 511 DLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccCCCchhhCChhhccccceeEEEecCCccC
Confidence 9999999999999999999999999999998
No 20
>KOG0618|consensus
Probab=98.06 E-value=2.1e-07 Score=84.55 Aligned_cols=82 Identities=24% Similarity=0.306 Sum_probs=53.1
Q ss_pred ceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccEEE
Q psy14513 22 MKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLD 101 (209)
Q Consensus 22 ~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~ 101 (209)
.+|.+| .+++|+|..+|+..+.++..|++|+||+| +++.++.. ...+..|+.|...+|++..+| ++..++.|+.+|
T Consensus 383 ~hLKVL-hLsyNrL~~fpas~~~kle~LeeL~LSGN-kL~~Lp~t-va~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lD 458 (1081)
T KOG0618|consen 383 KHLKVL-HLSYNRLNSFPASKLRKLEELEELNLSGN-KLTTLPDT-VANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLD 458 (1081)
T ss_pred cceeee-eecccccccCCHHHHhchHHhHHHhcccc-hhhhhhHH-HHhhhhhHHHhhcCCceeech-hhhhcCcceEEe
Confidence 344443 22567777777666667777777777777 76666633 333566677777777777666 556677788888
Q ss_pred eeCCCC
Q psy14513 102 IQSNPW 107 (209)
Q Consensus 102 l~~Np~ 107 (209)
++.|.+
T Consensus 459 lS~N~L 464 (1081)
T KOG0618|consen 459 LSCNNL 464 (1081)
T ss_pred cccchh
Confidence 887755
No 21
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.04 E-value=3e-06 Score=49.25 Aligned_cols=38 Identities=29% Similarity=0.390 Sum_probs=20.4
Q ss_pred ccceecccccccccccCccccCCCCCcCEEeccCCcCccc
Q psy14513 48 NLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSL 87 (209)
Q Consensus 48 ~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l 87 (209)
+|++|++++| .|+.+++. +..++.|+.|++++|+++.+
T Consensus 2 ~L~~L~l~~N-~i~~l~~~-l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPPE-LSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSS-S-SSHGGH-GTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCC-CCcccCch-HhCCCCCCEEEecCCCCCCC
Confidence 4556666666 66655542 34456666666666665554
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.00 E-value=6.3e-06 Score=75.60 Aligned_cols=59 Identities=24% Similarity=0.292 Sum_probs=41.5
Q ss_pred cccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccEEEeeCCCCccc
Q psy14513 47 LNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWTCD 110 (209)
Q Consensus 47 ~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~l~~Np~~C~ 110 (209)
.+|+.|++++| .++.++.. ...|+.|++++|+++.+|..+..++.|+.+++++|||.+.
T Consensus 402 s~L~~LdLS~N-~LssIP~l----~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 402 SELKELMVSGN-RLTSLPML----PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred cCCCEEEccCC-cCCCCCcc----hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCch
Confidence 34555566666 55555432 2346777778888887777667788999999999999863
No 23
>KOG0618|consensus
Probab=97.99 E-value=8.4e-07 Score=80.83 Aligned_cols=90 Identities=18% Similarity=0.157 Sum_probs=61.5
Q ss_pred ccCCcccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-
Q psy14513 13 ISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL- 91 (209)
Q Consensus 13 ~~~~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~- 91 (209)
+|...+.++..|..| .+|+|.++.++ .....+..|++|...+| .+..++ .+..++.|+.+|++.|.|+.+....
T Consensus 398 fpas~~~kle~LeeL-~LSGNkL~~Lp-~tva~~~~L~tL~ahsN-~l~~fP--e~~~l~qL~~lDlS~N~L~~~~l~~~ 472 (1081)
T KOG0618|consen 398 FPASKLRKLEELEEL-NLSGNKLTTLP-DTVANLGRLHTLRAHSN-QLLSFP--ELAQLPQLKVLDLSCNNLSEVTLPEA 472 (1081)
T ss_pred CCHHHHhchHHhHHH-hcccchhhhhh-HHHHhhhhhHHHhhcCC-ceeech--hhhhcCcceEEecccchhhhhhhhhh
Confidence 444444444433332 33788888888 55567888888888888 888777 3445788888888888888743333
Q ss_pred CCCCCccEEEeeCCCC
Q psy14513 92 GDWDSLEVLDIQSNPW 107 (209)
Q Consensus 92 ~~l~~L~~l~l~~Np~ 107 (209)
...++|++||++||+|
T Consensus 473 ~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 473 LPSPNLKYLDLSGNTR 488 (1081)
T ss_pred CCCcccceeeccCCcc
Confidence 3447888888888886
No 24
>KOG0532|consensus
Probab=97.94 E-value=2e-06 Score=74.91 Aligned_cols=75 Identities=21% Similarity=0.299 Sum_probs=50.6
Q ss_pred ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccEEEeeCCCCcc
Q psy14513 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWTC 109 (209)
Q Consensus 31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~l~~Np~~C 109 (209)
+.|+|..+++.. ++|.+|+.|.+..| .+..++++.- --+|..||++.|+++.+|..+..+..|+++.|.+||+.-
T Consensus 174 s~nei~slpsql-~~l~slr~l~vrRn-~l~~lp~El~--~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 174 SKNEIQSLPSQL-GYLTSLRDLNVRRN-HLEDLPEELC--SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred hhhhhhhchHHh-hhHHHHHHHHHhhh-hhhhCCHHHh--CCceeeeecccCceeecchhhhhhhhheeeeeccCCCCC
Confidence 444444444322 33444444444444 4444444432 245899999999999999998999999999999999964
No 25
>KOG1644|consensus
Probab=97.92 E-value=1e-05 Score=62.07 Aligned_cols=76 Identities=28% Similarity=0.297 Sum_probs=66.0
Q ss_pred ccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC--CCCCCccEEEeeCCC
Q psy14513 29 STANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL--GDWDSLEVLDIQSNP 106 (209)
Q Consensus 29 ~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~--~~l~~L~~l~l~~Np 106 (209)
++++|.+..++ .|..++.|++|.+.+| +|..|.+..-.-++.|+.|.|.+|.+..+-.-. ..+|+|++|.+-+||
T Consensus 48 DLtdNdl~~l~--~lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 48 DLTDNDLRKLD--NLPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP 124 (233)
T ss_pred cccccchhhcc--cCCCccccceEEecCC-cceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCc
Confidence 45889988877 5778999999999999 999999987666788999999999999975433 788999999999999
Q ss_pred C
Q psy14513 107 W 107 (209)
Q Consensus 107 ~ 107 (209)
.
T Consensus 125 v 125 (233)
T KOG1644|consen 125 V 125 (233)
T ss_pred h
Confidence 6
No 26
>KOG0617|consensus
Probab=97.87 E-value=7.7e-07 Score=66.80 Aligned_cols=98 Identities=20% Similarity=0.313 Sum_probs=75.7
Q ss_pred CCCCCCcccccCCcccccceeccccccccccccccCchhhcCCcccceecccccccccc-cCccccCCCCCcCEEeccCC
Q psy14513 4 KQNSGSRQDISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTF-IHPYSFNNDWSLKEFYINNN 82 (209)
Q Consensus 4 ~~~~~~~~~~~~~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~-i~~~~f~~l~~L~~L~Ls~N 82 (209)
+|....|..|++-..+ .+|.+ +-|.+..+|. -|+.++.|+.|||++| .+.. .-|+-|..+..|+-|+|++|
T Consensus 66 nqie~lp~~issl~kl--r~lnv----gmnrl~~lpr-gfgs~p~levldltyn-nl~e~~lpgnff~m~tlralyl~dn 137 (264)
T KOG0617|consen 66 NQIEELPTSISSLPKL--RILNV----GMNRLNILPR-GFGSFPALEVLDLTYN-NLNENSLPGNFFYMTTLRALYLGDN 137 (264)
T ss_pred chhhhcChhhhhchhh--hheec----chhhhhcCcc-ccCCCchhhhhhcccc-ccccccCCcchhHHHHHHHHHhcCC
Confidence 3445566666555443 44555 6788887775 5789999999999998 7654 44555666888999999999
Q ss_pred cCcccCCCCCCCCCccEEEeeCCCCcc
Q psy14513 83 AITSLPHELGDWDSLEVLDIQSNPWTC 109 (209)
Q Consensus 83 ~l~~l~~~~~~l~~L~~l~l~~Np~~C 109 (209)
.+..+|++++.+++|+.|.+.+|.+.-
T Consensus 138 dfe~lp~dvg~lt~lqil~lrdndll~ 164 (264)
T KOG0617|consen 138 DFEILPPDVGKLTNLQILSLRDNDLLS 164 (264)
T ss_pred CcccCChhhhhhcceeEEeeccCchhh
Confidence 999999999999999999999998754
No 27
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.85 E-value=1.2e-05 Score=46.69 Aligned_cols=37 Identities=41% Similarity=0.654 Sum_probs=32.2
Q ss_pred CCcCEEeccCCcCcccCCCCCCCCCccEEEeeCCCCc
Q psy14513 72 WSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWT 108 (209)
Q Consensus 72 ~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~l~~Np~~ 108 (209)
++|++|++++|+++.+|+.+..+++|+.+++++|++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 3689999999999999987799999999999999986
No 28
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.78 E-value=5.1e-05 Score=69.78 Aligned_cols=54 Identities=22% Similarity=0.329 Sum_probs=31.1
Q ss_pred cceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccEEEeeCCCCc
Q psy14513 49 LQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWT 108 (209)
Q Consensus 49 L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~l~~Np~~ 108 (209)
|+.|+|++| .+..++... ...|+.|++++|+++.+|..+. ++|+.|++++|.+.
T Consensus 243 L~~L~Ls~N-~L~~LP~~l---~s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 243 IQEMELSIN-RITELPERL---PSALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIR 296 (754)
T ss_pred ccEEECcCC-ccCcCChhH---hCCCCEEECcCCccCccccccC--CCCcEEECCCCccc
Confidence 444444444 444443322 1346777777777777665442 36777888887765
No 29
>KOG1259|consensus
Probab=97.78 E-value=3.5e-06 Score=68.43 Aligned_cols=53 Identities=13% Similarity=0.122 Sum_probs=25.1
Q ss_pred ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCccc
Q psy14513 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSL 87 (209)
Q Consensus 31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l 87 (209)
|+|.|+.+.. +..-++.++.|++|+| .|..++.-+| +++|+.||||+|.++.+
T Consensus 292 S~N~I~~iDE-SvKL~Pkir~L~lS~N-~i~~v~nLa~--L~~L~~LDLS~N~Ls~~ 344 (490)
T KOG1259|consen 292 SGNLITQIDE-SVKLAPKLRRLILSQN-RIRTVQNLAE--LPQLQLLDLSGNLLAEC 344 (490)
T ss_pred cccchhhhhh-hhhhccceeEEecccc-ceeeehhhhh--cccceEeecccchhHhh
Confidence 5555555442 2233455555555555 5555444322 44455555555544443
No 30
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.78 E-value=4.2e-05 Score=70.33 Aligned_cols=87 Identities=31% Similarity=0.335 Sum_probs=68.3
Q ss_pred CCCCCcccccCCcccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcC
Q psy14513 5 QNSGSRQDISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAI 84 (209)
Q Consensus 5 ~~~~~~~~~~~~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l 84 (209)
+.+..|..++. .+..|.+ ++|.|+.++...+ .+|++|++++| .++.++... ...|+.|+|++|.+
T Consensus 189 ~LtsLP~~Ip~----~L~~L~L----s~N~LtsLP~~l~---~nL~~L~Ls~N-~LtsLP~~l---~~~L~~L~Ls~N~L 253 (754)
T PRK15370 189 GLTTIPACIPE----QITTLIL----DNNELKSLPENLQ---GNIKTLYANSN-QLTSIPATL---PDTIQEMELSINRI 253 (754)
T ss_pred CcCcCCccccc----CCcEEEe----cCCCCCcCChhhc---cCCCEEECCCC-ccccCChhh---hccccEEECcCCcc
Confidence 44556666654 3455777 8999999987665 48999999999 999887653 24699999999999
Q ss_pred cccCCCCCCCCCccEEEeeCCCCc
Q psy14513 85 TSLPHELGDWDSLEVLDIQSNPWT 108 (209)
Q Consensus 85 ~~l~~~~~~l~~L~~l~l~~Np~~ 108 (209)
..+|..+. .+|+.|++++|.+.
T Consensus 254 ~~LP~~l~--s~L~~L~Ls~N~L~ 275 (754)
T PRK15370 254 TELPERLP--SALQSLDLFHNKIS 275 (754)
T ss_pred CcCChhHh--CCCCEEECcCCccC
Confidence 99987663 47899999999875
No 31
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.71 E-value=6e-05 Score=69.30 Aligned_cols=49 Identities=16% Similarity=0.102 Sum_probs=30.6
Q ss_pred CCCCCCcccccCCcccccceeccccccccccccccCchhhcCCcccceecccccccccccCc
Q psy14513 4 KQNSGSRQDISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHP 65 (209)
Q Consensus 4 ~~~~~~~~~~~~~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~ 65 (209)
.+....|..++. ++..|.+ ++|+|+.++. .+++|++|++++| .++.++.
T Consensus 211 ~~LtsLP~~l~~----~L~~L~L----~~N~Lt~LP~----lp~~Lk~LdLs~N-~LtsLP~ 259 (788)
T PRK15387 211 SGLTTLPDCLPA----HITTLVI----PDNNLTSLPA----LPPELRTLEVSGN-QLTSLPV 259 (788)
T ss_pred CCCCcCCcchhc----CCCEEEc----cCCcCCCCCC----CCCCCcEEEecCC-ccCcccC
Confidence 344445555543 3455666 6777777764 2467777777777 7777653
No 32
>KOG1859|consensus
Probab=97.65 E-value=2.2e-06 Score=76.61 Aligned_cols=77 Identities=25% Similarity=0.329 Sum_probs=52.2
Q ss_pred cccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccC---------------------
Q psy14513 30 TANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLP--------------------- 88 (209)
Q Consensus 30 ~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~--------------------- 88 (209)
+++|+++.+. .+..++.|++|||+.| .+..++.-.-.+.. |+.|.+++|-++++.
T Consensus 194 LshNk~~~v~--~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~gie~LksL~~LDlsyNll~~h 269 (1096)
T KOG1859|consen 194 LSHNKFTKVD--NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQLLNLRNNALTTLRGIENLKSLYGLDLSYNLLSEH 269 (1096)
T ss_pred cchhhhhhhH--HHHhcccccccccccc-hhccccccchhhhh-heeeeecccHHHhhhhHHhhhhhhccchhHhhhhcc
Confidence 3899999888 6788999999999999 99888765433322 555555555555432
Q ss_pred -CCC--CCCCCccEEEeeCCCCccc
Q psy14513 89 -HEL--GDWDSLEVLDIQSNPWTCD 110 (209)
Q Consensus 89 -~~~--~~l~~L~~l~l~~Np~~C~ 110 (209)
.-. ..+..|..|.|.|||+-|.
T Consensus 270 seL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 270 SELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred hhhhHHHHHHHHHHHhhcCCccccC
Confidence 111 2233556678888888885
No 33
>KOG1259|consensus
Probab=97.51 E-value=2.8e-05 Score=63.34 Aligned_cols=59 Identities=22% Similarity=0.241 Sum_probs=37.1
Q ss_pred CcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccEEEeeCCCC
Q psy14513 46 LLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPW 107 (209)
Q Consensus 46 l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~l~~Np~ 107 (209)
+..|+++|||+| .|+.|+...-- .+.++.|++|.|.+..+.. ...+++|+.||+++|-+
T Consensus 283 Wq~LtelDLS~N-~I~~iDESvKL-~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~L 341 (490)
T KOG1259|consen 283 WQELTELDLSGN-LITQIDESVKL-APKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLL 341 (490)
T ss_pred Hhhhhhcccccc-chhhhhhhhhh-ccceeEEeccccceeeehh-hhhcccceEeecccchh
Confidence 445666677777 77666665432 5667777777777766543 45566666677776655
No 34
>KOG4579|consensus
Probab=97.43 E-value=6.1e-06 Score=59.75 Aligned_cols=74 Identities=15% Similarity=0.162 Sum_probs=45.0
Q ss_pred ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccEEEeeCCC
Q psy14513 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNP 106 (209)
Q Consensus 31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~l~~Np 106 (209)
++|.+...++.--...+.++.++|++| .|+.++.+ +..++.|+.++++.|.+...|..+..+.++..|+..+|.
T Consensus 61 s~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE-~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 61 SDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEE-LAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred ccchhhhCCHHHhhccchhhhhhcchh-hhhhchHH-HhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCc
Confidence 666666666544344445666666666 66666666 555666666666666666666555335555555555553
No 35
>KOG4579|consensus
Probab=97.05 E-value=3.8e-05 Score=55.69 Aligned_cols=81 Identities=17% Similarity=0.187 Sum_probs=64.7
Q ss_pred ccccccccCc--hhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccEEEeeCCCCc
Q psy14513 31 ANSELYAIRK--NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWT 108 (209)
Q Consensus 31 s~n~l~~l~~--~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~l~~Np~~ 108 (209)
++.+|-.+++ ........|+..+|++| .+..+++..-...+.+..+++++|.++.+|.++..++.|+.++++.||+.
T Consensus 35 ssc~lm~i~davy~l~~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~ 113 (177)
T KOG4579|consen 35 SSCQLMYIADAVYMLSKGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLN 113 (177)
T ss_pred ccchhhHHHHHHHHHhCCceEEEEecccc-hhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccc
Confidence 6676666653 33445667788899999 99988887555555789999999999999998889999999999999998
Q ss_pred cccC
Q psy14513 109 CDCS 112 (209)
Q Consensus 109 C~C~ 112 (209)
-...
T Consensus 114 ~~p~ 117 (177)
T KOG4579|consen 114 AEPR 117 (177)
T ss_pred cchH
Confidence 7654
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.03 E-value=0.00018 Score=61.28 Aligned_cols=80 Identities=26% Similarity=0.416 Sum_probs=56.7
Q ss_pred ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccE
Q psy14513 20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEV 99 (209)
Q Consensus 20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~ 99 (209)
++..|.+ ++|.+..++ .....+++|+.|++++| .+..+++.... .+.|+.|++++|+++.+|........|+.
T Consensus 141 nL~~L~l----~~N~i~~l~-~~~~~l~~L~~L~l~~N-~l~~l~~~~~~-~~~L~~L~ls~N~i~~l~~~~~~~~~L~~ 213 (394)
T COG4886 141 NLKELDL----SDNKIESLP-SPLRNLPNLKNLDLSFN-DLSDLPKLLSN-LSNLNNLDLSGNKISDLPPEIELLSALEE 213 (394)
T ss_pred hcccccc----cccchhhhh-hhhhccccccccccCCc-hhhhhhhhhhh-hhhhhheeccCCccccCchhhhhhhhhhh
Confidence 4555666 778888775 23456788888888888 88887776432 57788888888888888765444555777
Q ss_pred EEeeCCC
Q psy14513 100 LDIQSNP 106 (209)
Q Consensus 100 l~l~~Np 106 (209)
+.+++|+
T Consensus 214 l~~~~N~ 220 (394)
T COG4886 214 LDLSNNS 220 (394)
T ss_pred hhhcCCc
Confidence 7777774
No 37
>KOG0532|consensus
Probab=96.81 E-value=0.00011 Score=64.32 Aligned_cols=108 Identities=19% Similarity=0.127 Sum_probs=68.5
Q ss_pred CCCCCCCCcccccCCcccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccC
Q psy14513 2 TSKQNSGSRQDISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINN 81 (209)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~ 81 (209)
++++++..|..++.-... -|-+ ++|+++.++.+. +.+..|..||.+.| .+..++++.- ++.+|+.|.+.+
T Consensus 129 s~NqlS~lp~~lC~lpLk---vli~----sNNkl~~lp~~i-g~~~tl~~ld~s~n-ei~slpsql~-~l~slr~l~vrR 198 (722)
T KOG0532|consen 129 SSNQLSHLPDGLCDLPLK---VLIV----SNNKLTSLPEEI-GLLPTLAHLDVSKN-EIQSLPSQLG-YLTSLRDLNVRR 198 (722)
T ss_pred ccchhhcCChhhhcCcce---eEEE----ecCccccCCccc-ccchhHHHhhhhhh-hhhhchHHhh-hHHHHHHHHHhh
Confidence 456666666666654422 2222 677777776544 36666777777777 7776666543 366677777777
Q ss_pred CcCcccCCCCCCCCCccEEEeeCCCC----ccccCcHhHHHHH
Q psy14513 82 NAITSLPHELGDWDSLEVLDIQSNPW----TCDCSIQWLIDYV 120 (209)
Q Consensus 82 N~l~~l~~~~~~l~~L~~l~l~~Np~----~C~C~~~~~~~~~ 120 (209)
|.+..+|++...| .|..||++.|.. .|-|++..++...
T Consensus 199 n~l~~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~ 240 (722)
T KOG0532|consen 199 NHLEDLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQ 240 (722)
T ss_pred hhhhhCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeee
Confidence 7777777666533 366788888876 4777777666543
No 38
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=96.77 E-value=0.0024 Score=61.86 Aligned_cols=33 Identities=15% Similarity=0.416 Sum_probs=24.5
Q ss_pred CCcCEEeccCCcCcccCCCCCCCCCccEEEeeC
Q psy14513 72 WSLKEFYINNNAITSLPHELGDWDSLEVLDIQS 104 (209)
Q Consensus 72 ~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~l~~ 104 (209)
.+|+.|+|++|.++.+|..+..+++|+.|++.+
T Consensus 846 ~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~ 878 (1153)
T PLN03210 846 TNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNG 878 (1153)
T ss_pred cccCEeECCCCCCccChHHHhcCCCCCEEECCC
Confidence 346777777777777776667777888888776
No 39
>KOG0531|consensus
Probab=96.73 E-value=0.00076 Score=58.10 Aligned_cols=81 Identities=28% Similarity=0.359 Sum_probs=52.3
Q ss_pred ccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCc
Q psy14513 18 QYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSL 97 (209)
Q Consensus 18 ~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L 97 (209)
+.++..|.+ .+|.|..+... +..+++|+.|++++| .|+.+.+-.. +..|+.|++++|.++.+. +...+..|
T Consensus 94 ~~~l~~l~l----~~n~i~~i~~~-l~~~~~L~~L~ls~N-~I~~i~~l~~--l~~L~~L~l~~N~i~~~~-~~~~l~~L 164 (414)
T KOG0531|consen 94 LKSLEALDL----YDNKIEKIENL-LSSLVNLQVLDLSFN-KITKLEGLST--LTLLKELNLSGNLISDIS-GLESLKSL 164 (414)
T ss_pred ccceeeeec----cccchhhcccc-hhhhhcchheecccc-ccccccchhh--ccchhhheeccCcchhcc-CCccchhh
Confidence 344444555 77777777652 345777788888888 7777766442 445777777777777764 23346666
Q ss_pred cEEEeeCCCC
Q psy14513 98 EVLDIQSNPW 107 (209)
Q Consensus 98 ~~l~l~~Np~ 107 (209)
+.+++++|..
T Consensus 165 ~~l~l~~n~i 174 (414)
T KOG0531|consen 165 KLLDLSYNRI 174 (414)
T ss_pred hcccCCcchh
Confidence 7777776654
No 40
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=96.67 E-value=0.00076 Score=55.37 Aligned_cols=14 Identities=29% Similarity=0.292 Sum_probs=6.9
Q ss_pred cccceeccccccccc
Q psy14513 47 LNLQTLYCNFNPKLT 61 (209)
Q Consensus 47 ~~L~~L~Ls~n~~l~ 61 (209)
++|+.|++++| .++
T Consensus 137 ~~L~~L~L~~n-~l~ 150 (319)
T cd00116 137 PALEKLVLGRN-RLE 150 (319)
T ss_pred CCceEEEcCCC-cCC
Confidence 44555555555 444
No 41
>KOG1644|consensus
Probab=96.60 E-value=0.0021 Score=49.62 Aligned_cols=76 Identities=20% Similarity=0.098 Sum_probs=62.0
Q ss_pred ccccccccccCchhhcCCcccceecccccccccccCc-cccCCCCCcCEEeccCCcCcccCCCC----CCCCCccEEEee
Q psy14513 29 STANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHP-YSFNNDWSLKEFYINNNAITSLPHEL----GDWDSLEVLDIQ 103 (209)
Q Consensus 29 ~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~-~~f~~l~~L~~L~Ls~N~l~~l~~~~----~~l~~L~~l~l~ 103 (209)
++++|+|+.|.+.--.-+++|+.|.|.+| .|..+.. +....++.|++|.+-+|..+.-..-. ..+|+|+.+|..
T Consensus 70 ll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 70 LLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred EecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehh
Confidence 34899999999987777899999999999 9888655 55566889999999999998754322 568899999887
Q ss_pred CC
Q psy14513 104 SN 105 (209)
Q Consensus 104 ~N 105 (209)
+-
T Consensus 149 kV 150 (233)
T KOG1644|consen 149 KV 150 (233)
T ss_pred hh
Confidence 63
No 42
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=96.54 E-value=0.00058 Score=56.10 Aligned_cols=78 Identities=21% Similarity=0.176 Sum_probs=40.0
Q ss_pred ccccccccCchhhcCCcc---cceecccccccccccC----ccccCCC-CCcCEEeccCCcCcc-----cCCCCCCCCCc
Q psy14513 31 ANSELYAIRKNTFKNLLN---LQTLYCNFNPKLTFIH----PYSFNND-WSLKEFYINNNAITS-----LPHELGDWDSL 97 (209)
Q Consensus 31 s~n~l~~l~~~~f~~l~~---L~~L~Ls~n~~l~~i~----~~~f~~l-~~L~~L~Ls~N~l~~-----l~~~~~~l~~L 97 (209)
++|.+....+..|..+.. |++|++++| .++... ...+... ++|+.+++++|.++. +...+..++.|
T Consensus 89 ~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~-~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L 167 (319)
T cd00116 89 SDNALGPDGCGVLESLLRSSSLQELKLNNN-GLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDL 167 (319)
T ss_pred cCCCCChhHHHHHHHHhccCcccEEEeeCC-ccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCc
Confidence 566665544444444444 666677666 554211 1122223 556666666666662 11111344556
Q ss_pred cEEEeeCCCCcc
Q psy14513 98 EVLDIQSNPWTC 109 (209)
Q Consensus 98 ~~l~l~~Np~~C 109 (209)
+++++++|.+..
T Consensus 168 ~~L~l~~n~l~~ 179 (319)
T cd00116 168 KELNLANNGIGD 179 (319)
T ss_pred CEEECcCCCCch
Confidence 666666665543
No 43
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.46 E-value=0.0014 Score=55.83 Aligned_cols=81 Identities=25% Similarity=0.279 Sum_probs=63.2
Q ss_pred cceeccccccccccccccCchhhcCCc-ccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccE
Q psy14513 21 IMKVQLPYSTANSELYAIRKNTFKNLL-NLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEV 99 (209)
Q Consensus 21 l~~L~ll~~~s~n~l~~l~~~~f~~l~-~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~ 99 (209)
+..|.+ .+|.+..+++... .+. +|+.|++++| .+..++.. ...++.|+.|++++|+++.++.....++.|..
T Consensus 118 l~~L~l----~~n~i~~i~~~~~-~~~~nL~~L~l~~N-~i~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 118 LTSLDL----DNNNITDIPPLIG-LLKSNLKELDLSDN-KIESLPSP-LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNN 190 (394)
T ss_pred eeEEec----CCcccccCccccc-cchhhccccccccc-chhhhhhh-hhccccccccccCCchhhhhhhhhhhhhhhhh
Confidence 344555 7899999987543 343 8999999999 98888522 23478899999999999999876567888999
Q ss_pred EEeeCCCCc
Q psy14513 100 LDIQSNPWT 108 (209)
Q Consensus 100 l~l~~Np~~ 108 (209)
+++++|.+.
T Consensus 191 L~ls~N~i~ 199 (394)
T COG4886 191 LDLSGNKIS 199 (394)
T ss_pred eeccCCccc
Confidence 999999774
No 44
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=96.32 E-value=0.0092 Score=57.95 Aligned_cols=20 Identities=15% Similarity=0.202 Sum_probs=8.7
Q ss_pred CCCCcCEEeccCC-cCcccCC
Q psy14513 70 NDWSLKEFYINNN-AITSLPH 89 (209)
Q Consensus 70 ~l~~L~~L~Ls~N-~l~~l~~ 89 (209)
.+.+|+.|++++| .++.+|.
T Consensus 679 ~L~~L~~L~L~~c~~L~~Lp~ 699 (1153)
T PLN03210 679 YLNKLEDLDMSRCENLEILPT 699 (1153)
T ss_pred ccCCCCEEeCCCCCCcCccCC
Confidence 3444555555442 3333443
No 45
>KOG4658|consensus
Probab=96.30 E-value=0.0012 Score=62.01 Aligned_cols=75 Identities=21% Similarity=0.297 Sum_probs=59.9
Q ss_pred cccc--ccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccEEEeeCCC
Q psy14513 31 ANSE--LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNP 106 (209)
Q Consensus 31 s~n~--l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~l~~Np 106 (209)
..|. +..+..+.|..++.|..|||++|..+..+|.. -+++.+|++|++++..++.+|..++.+..|.+|++..+-
T Consensus 553 ~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~ 629 (889)
T KOG4658|consen 553 QRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTG 629 (889)
T ss_pred eecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccCCCccccchHHHHHHhhheecccccc
Confidence 5564 78888888999999999999988556666554 445888999999999999999888777788888777654
No 46
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=96.12 E-value=0.003 Score=31.93 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=16.4
Q ss_pred CcccceecccccccccccCccccC
Q psy14513 46 LLNLQTLYCNFNPKLTFIHPYSFN 69 (209)
Q Consensus 46 l~~L~~L~Ls~n~~l~~i~~~~f~ 69 (209)
|++|+.|+|++| .|+.+++++|.
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNN-QLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHHHcc
Confidence 356777777777 77777777664
No 47
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=96.12 E-value=0.003 Score=31.93 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=16.4
Q ss_pred CcccceecccccccccccCccccC
Q psy14513 46 LLNLQTLYCNFNPKLTFIHPYSFN 69 (209)
Q Consensus 46 l~~L~~L~Ls~n~~l~~i~~~~f~ 69 (209)
|++|+.|+|++| .|+.+++++|.
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNN-QLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHHHcc
Confidence 356777777777 77777777664
No 48
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.95 E-value=0.0043 Score=30.13 Aligned_cols=17 Identities=29% Similarity=0.534 Sum_probs=8.0
Q ss_pred cCEEeccCCcCcccCCC
Q psy14513 74 LKEFYINNNAITSLPHE 90 (209)
Q Consensus 74 L~~L~Ls~N~l~~l~~~ 90 (209)
|++||+++|+++.+|++
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 44445555544444443
No 49
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.94 E-value=0.017 Score=40.80 Aligned_cols=70 Identities=29% Similarity=0.363 Sum_probs=43.0
Q ss_pred ccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCC
Q psy14513 33 SELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSN 105 (209)
Q Consensus 33 n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~N 105 (209)
+.+..+...+|.+..+|+.+.+.++ +..++..+|.+..+++.+.+.+ .+..++... ...+.++.+.+..|
T Consensus 21 ~~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~ 91 (129)
T PF13306_consen 21 NTIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN 91 (129)
T ss_dssp ST--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT
T ss_pred CCeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-cccccccccccccccccccccCcc
Confidence 4677888888888878888887554 6778888888777788888865 666666655 66777777777543
No 50
>KOG1859|consensus
Probab=95.86 E-value=0.0013 Score=59.60 Aligned_cols=56 Identities=20% Similarity=0.288 Sum_probs=47.1
Q ss_pred ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCC
Q psy14513 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE 90 (209)
Q Consensus 31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~ 90 (209)
++|.+..++ .++.-++.|+.|+|++| ++...+ ....++.|++|||+.|.++.+|.-
T Consensus 172 syN~L~~mD-~SLqll~ale~LnLshN-k~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l 227 (1096)
T KOG1859|consen 172 SYNRLVLMD-ESLQLLPALESLNLSHN-KFTKVD--NLRRLPKLKHLDLSYNCLRHVPQL 227 (1096)
T ss_pred chhhHHhHH-HHHHHHHHhhhhccchh-hhhhhH--HHHhcccccccccccchhcccccc
Confidence 778887765 45667899999999999 888877 566789999999999999998853
No 51
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.86 E-value=0.0033 Score=30.56 Aligned_cols=21 Identities=43% Similarity=0.388 Sum_probs=14.6
Q ss_pred ccceecccccccccccCccccCC
Q psy14513 48 NLQTLYCNFNPKLTFIHPYSFNN 70 (209)
Q Consensus 48 ~L~~L~Ls~n~~l~~i~~~~f~~ 70 (209)
+|++||+++| .++.++++ |.+
T Consensus 1 ~L~~Ldls~n-~l~~ip~~-~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSS-FSN 21 (22)
T ss_dssp TESEEEETSS-EESEEGTT-TTT
T ss_pred CccEEECCCC-cCEeCChh-hcC
Confidence 4677777787 77777666 543
No 52
>KOG3207|consensus
Probab=95.75 E-value=0.0029 Score=53.98 Aligned_cols=76 Identities=25% Similarity=0.311 Sum_probs=45.3
Q ss_pred ccccccccCchhhcCCcccceecccccccccccCc-cccCCCCCcCEEeccCCcCccc--CCC-----CCCCCCccEEEe
Q psy14513 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHP-YSFNNDWSLKEFYINNNAITSL--PHE-----LGDWDSLEVLDI 102 (209)
Q Consensus 31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~-~~f~~l~~L~~L~Ls~N~l~~l--~~~-----~~~l~~L~~l~l 102 (209)
..|+...+....+.-+..|++|||++| .+-..+. .....++.|..|+++.+.+.++ |+. ...+++|++|++
T Consensus 230 ~~N~~~~~~~~~~~i~~~L~~LdLs~N-~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i 308 (505)
T KOG3207|consen 230 EANEIILIKATSTKILQTLQELDLSNN-NLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNI 308 (505)
T ss_pred hcccccceecchhhhhhHHhhccccCC-cccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeec
Confidence 344444455555566667777777777 5555443 2233356677777777777763 222 134567778888
Q ss_pred eCCCC
Q psy14513 103 QSNPW 107 (209)
Q Consensus 103 ~~Np~ 107 (209)
..|+.
T Consensus 309 ~~N~I 313 (505)
T KOG3207|consen 309 SENNI 313 (505)
T ss_pred ccCcc
Confidence 77775
No 53
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.59 E-value=0.0081 Score=27.26 Aligned_cols=16 Identities=44% Similarity=0.760 Sum_probs=7.0
Q ss_pred CcCEEeccCCcCcccC
Q psy14513 73 SLKEFYINNNAITSLP 88 (209)
Q Consensus 73 ~L~~L~Ls~N~l~~l~ 88 (209)
+|+.|++++|+++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4566666666665544
No 54
>KOG0531|consensus
Probab=95.56 E-value=0.0032 Score=54.29 Aligned_cols=85 Identities=21% Similarity=0.184 Sum_probs=65.2
Q ss_pred CcccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCC-CCCC
Q psy14513 16 DTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGDW 94 (209)
Q Consensus 16 ~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~-~~~l 94 (209)
....+|..|.+ ++|.|+.+.+-. .++.|+.|++++| .|+.+..... +..|+.+++++|++..+... ...+
T Consensus 115 ~~~~~L~~L~l----s~N~I~~i~~l~--~l~~L~~L~l~~N-~i~~~~~~~~--l~~L~~l~l~~n~i~~ie~~~~~~~ 185 (414)
T KOG0531|consen 115 SSLVNLQVLDL----SFNKITKLEGLS--TLTLLKELNLSGN-LISDISGLES--LKSLKLLDLSYNRIVDIENDELSEL 185 (414)
T ss_pred hhhhcchheec----cccccccccchh--hccchhhheeccC-cchhccCCcc--chhhhcccCCcchhhhhhhhhhhhc
Confidence 33455666777 999999998643 4677999999999 9998877543 78899999999999988763 3556
Q ss_pred CCccEEEeeCCCCcc
Q psy14513 95 DSLEVLDIQSNPWTC 109 (209)
Q Consensus 95 ~~L~~l~l~~Np~~C 109 (209)
.++..+.+.+|....
T Consensus 186 ~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 186 ISLEELDLGGNSIRE 200 (414)
T ss_pred cchHHHhccCCchhc
Confidence 677777777776654
No 55
>KOG2739|consensus
Probab=95.55 E-value=0.0088 Score=47.72 Aligned_cols=83 Identities=20% Similarity=0.209 Sum_probs=54.5
Q ss_pred CcccccceeccccccccccccccCchhhcCCcccceeccccccccc---ccCccccCCCCCcCEEeccCCcCcccCCCC-
Q psy14513 16 DTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLT---FIHPYSFNNDWSLKEFYINNNAITSLPHEL- 91 (209)
Q Consensus 16 ~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~---~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~- 91 (209)
+.+.++..|.+ .+-.++++. .|..|++|+.|.++.| ... .++.-+-. .++|+++++++|+++-+. .+
T Consensus 40 d~~~~le~ls~----~n~gltt~~--~~P~Lp~LkkL~lsdn-~~~~~~~l~vl~e~-~P~l~~l~ls~Nki~~ls-tl~ 110 (260)
T KOG2739|consen 40 DEFVELELLSV----INVGLTTLT--NFPKLPKLKKLELSDN-YRRVSGGLEVLAEK-APNLKVLNLSGNKIKDLS-TLR 110 (260)
T ss_pred ccccchhhhhh----hccceeecc--cCCCcchhhhhcccCC-cccccccceehhhh-CCceeEEeecCCcccccc-ccc
Confidence 34444444444 455555555 4567899999999999 432 23333333 488999999999998532 22
Q ss_pred --CCCCCccEEEeeCCCC
Q psy14513 92 --GDWDSLEVLDIQSNPW 107 (209)
Q Consensus 92 --~~l~~L~~l~l~~Np~ 107 (209)
..+.+|..|++.+++-
T Consensus 111 pl~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 111 PLKELENLKSLDLFNCSV 128 (260)
T ss_pred hhhhhcchhhhhcccCCc
Confidence 5567788888877643
No 56
>KOG3207|consensus
Probab=95.46 E-value=0.0079 Score=51.43 Aligned_cols=77 Identities=19% Similarity=0.171 Sum_probs=41.7
Q ss_pred ccccccccCc-hhhcCCcccceecccccccccccCcccc------CCCCCcCEEeccCCcCcccCC--CCCCCCCccEEE
Q psy14513 31 ANSELYAIRK-NTFKNLLNLQTLYCNFNPKLTFIHPYSF------NNDWSLKEFYINNNAITSLPH--ELGDWDSLEVLD 101 (209)
Q Consensus 31 s~n~l~~l~~-~~f~~l~~L~~L~Ls~n~~l~~i~~~~f------~~l~~L~~L~Ls~N~l~~l~~--~~~~l~~L~~l~ 101 (209)
++|++-..+. .....++.|..|.++.+ .+..+....- ...++|++|+++.|++..++. .+..+++|..+.
T Consensus 254 s~N~li~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~ 332 (505)
T KOG3207|consen 254 SNNNLIDFDQGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLR 332 (505)
T ss_pred cCCcccccccccccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhh
Confidence 5666555542 33345566666666666 5555432111 224557777777777654432 124556666666
Q ss_pred eeCCCCc
Q psy14513 102 IQSNPWT 108 (209)
Q Consensus 102 l~~Np~~ 108 (209)
...|++.
T Consensus 333 ~~~n~ln 339 (505)
T KOG3207|consen 333 ITLNYLN 339 (505)
T ss_pred ccccccc
Confidence 6666664
No 57
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.44 E-value=0.029 Score=39.55 Aligned_cols=65 Identities=31% Similarity=0.391 Sum_probs=45.3
Q ss_pred ccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeC
Q psy14513 37 AIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQS 104 (209)
Q Consensus 37 ~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~ 104 (209)
.+++.+|.+..+|+.+.+. + .+..|...+|.+..+++.+.+.++ +..++... ...++++.+.+.+
T Consensus 2 ~i~~~~F~~~~~l~~i~~~-~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 2 SIGNNAFYNCSNLESITFP-N-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp EE-TTTTTT-TT--EEEET-S-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS
T ss_pred EECHHHHhCCCCCCEEEEC-C-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc
Confidence 5788999999999999987 5 678999999999989999999885 88888777 7777899888854
No 58
>KOG2123|consensus
Probab=94.34 E-value=0.0016 Score=52.73 Aligned_cols=71 Identities=28% Similarity=0.351 Sum_probs=45.5
Q ss_pred cccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC--CCCCCccEEEeeCCCC
Q psy14513 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL--GDWDSLEVLDIQSNPW 107 (209)
Q Consensus 32 ~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~--~~l~~L~~l~l~~Np~ 107 (209)
+..|..|. ....++.|+.|.||-| +|+++.+- ..+..|+.|+|..|.|..+..-. .++++|+.|.|..||-
T Consensus 28 g~~L~DIs--ic~kMp~lEVLsLSvN-kIssL~pl--~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPC 100 (388)
T KOG2123|consen 28 GCGLDDIS--ICEKMPLLEVLSLSVN-KISSLAPL--QRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPC 100 (388)
T ss_pred CCCccHHH--HHHhcccceeEEeecc-ccccchhH--HHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCc
Confidence 34444443 2345677777777777 77766653 34566777777777777765433 6777777777777774
No 59
>PF01463 LRRCT: Leucine rich repeat C-terminal domain; InterPro: IPR000483 Leucine-rich repeats (LRR, see IPR001611 from INTERPRO) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions []. Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response. LRRs are often flanked by cysteine-rich domains: an N-terminal LRR domain (IPR000372 from INTERPRO) and a C-terminal LRR domain. This entry represents the C-terminal LRR domain. ; PDB: 3RFE_B 3REZ_D 2WFH_A 2V70_B 2V9S_C 2V9T_B 1W8A_A.
Probab=94.32 E-value=0.017 Score=29.03 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=17.6
Q ss_pred cccCCCCCCCCcccccCCCCCcccCccC
Q psy14513 134 LHCSQPVKFSNVHLLSNPLLSHISGECV 161 (209)
Q Consensus 134 ~~C~~p~~l~g~~l~~~~~~~~~~~~C~ 161 (209)
.+|+.|+.++| ++.++.. .++.|.
T Consensus 2 ~~Ca~P~~lrg-~l~~~~~---~~f~C~ 25 (25)
T PF01463_consen 2 ARCASPPELRG-PLLDLPP---SDFKCS 25 (25)
T ss_dssp -BEEESGGGTT-BGGGSSG---GG----
T ss_pred CccCCChHHcC-cHhhCCc---ccCcCC
Confidence 68999999999 9999987 777773
No 60
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.89 E-value=0.039 Score=27.69 Aligned_cols=21 Identities=33% Similarity=0.438 Sum_probs=18.0
Q ss_pred CCCcCEEeccCCcCcccCCCC
Q psy14513 71 DWSLKEFYINNNAITSLPHEL 91 (209)
Q Consensus 71 l~~L~~L~Ls~N~l~~l~~~~ 91 (209)
+++|+.|+|++|+++.+|.+.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467899999999999998765
No 61
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.89 E-value=0.039 Score=27.69 Aligned_cols=21 Identities=33% Similarity=0.438 Sum_probs=18.0
Q ss_pred CCCcCEEeccCCcCcccCCCC
Q psy14513 71 DWSLKEFYINNNAITSLPHEL 91 (209)
Q Consensus 71 l~~L~~L~Ls~N~l~~l~~~~ 91 (209)
+++|+.|+|++|+++.+|.+.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467899999999999998765
No 62
>KOG2982|consensus
Probab=93.65 E-value=0.054 Score=44.55 Aligned_cols=74 Identities=15% Similarity=0.075 Sum_probs=37.4
Q ss_pred ccccccccC--chhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccC-CCC-CCCCCccEEEeeCC
Q psy14513 31 ANSELYAIR--KNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLP-HEL-GDWDSLEVLDIQSN 105 (209)
Q Consensus 31 s~n~l~~l~--~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~-~~~-~~l~~L~~l~l~~N 105 (209)
.+|.|+... .....+||.|+.|+|+.| .+..-....-.....|+.+-|.+..+..-- ... ..+|.++.+.++.|
T Consensus 79 ~~N~iSdWseI~~ile~lP~l~~LNls~N-~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 79 TGNLISDWSEIGAILEQLPALTTLNLSCN-SLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred ccchhccHHHHHHHHhcCccceEeeccCC-cCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 566666543 234456666666666666 444322211112445666666655554311 112 55666666666666
No 63
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=92.66 E-value=0.22 Score=35.38 Aligned_cols=29 Identities=7% Similarity=-0.059 Sum_probs=14.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy14513 175 YKLYPLLFIMTLLLITLVVYLICMSYKYA 203 (209)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (209)
+.++++.++..+++++++++|+++|++++
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred eeehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34445555555555555555555544443
No 64
>KOG4658|consensus
Probab=91.25 E-value=0.091 Score=49.67 Aligned_cols=85 Identities=14% Similarity=0.104 Sum_probs=59.8
Q ss_pred ccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCC
Q psy14513 18 QYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDS 96 (209)
Q Consensus 18 ~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~ 96 (209)
|..++.|..|.+..+-.+..+| ...++|-+|++|++++. .++.+|.+ +..+..|.+|++..+.-...++.+ ..+++
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP-~~I~~Li~LryL~L~~t-~I~~LP~~-l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~ 643 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLP-SSIGELVHLRYLDLSDT-GISHLPSG-LGNLKKLIYLNLEVTGRLESIPGILLELQS 643 (889)
T ss_pred HhhCcceEEEECCCCCccCcCC-hHHhhhhhhhcccccCC-CccccchH-HHHHHhhheeccccccccccccchhhhccc
Confidence 5556666665333333445555 45578999999999999 99988776 445778999999977654444555 67889
Q ss_pred ccEEEeeCC
Q psy14513 97 LEVLDIQSN 105 (209)
Q Consensus 97 L~~l~l~~N 105 (209)
|++|.+..-
T Consensus 644 Lr~L~l~~s 652 (889)
T KOG4658|consen 644 LRVLRLPRS 652 (889)
T ss_pred ccEEEeecc
Confidence 998887554
No 65
>KOG0473|consensus
Probab=90.47 E-value=0.0096 Score=47.16 Aligned_cols=74 Identities=14% Similarity=0.119 Sum_probs=63.8
Q ss_pred ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccEEEeeCCCC
Q psy14513 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPW 107 (209)
Q Consensus 31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~l~~Np~ 107 (209)
+.|++..+.. .|.-++.+..|+++.| .+..++.++-+ ...+..+++..|.++..|...+..+.++.+++-+|||
T Consensus 50 ~s~r~vn~~~-n~s~~t~~~rl~~skn-q~~~~~~d~~q-~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 50 SSNRLVNLGK-NFSILTRLVRLDLSKN-QIKFLPKDAKQ-QRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred hhhHHHhhcc-chHHHHHHHHHhccHh-hHhhChhhHHH-HHHHHHHHhhccchhhCCccccccCCcchhhhccCcc
Confidence 7888887764 4667888999999999 99998887544 6778999999999999998888999999999999986
No 66
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=90.42 E-value=0.83 Score=25.22 Aligned_cols=13 Identities=23% Similarity=0.782 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q psy14513 186 LLLITLVVYLICM 198 (209)
Q Consensus 186 ~~~~~~~~~~~~~ 198 (209)
+++++.+.|..|+
T Consensus 18 iiii~~~~YaCcy 30 (38)
T PF02439_consen 18 IIIICMFYYACCY 30 (38)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 67
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=89.38 E-value=0.27 Score=24.88 Aligned_cols=18 Identities=56% Similarity=0.731 Sum_probs=14.6
Q ss_pred CCcCEEeccCCcCcccCC
Q psy14513 72 WSLKEFYINNNAITSLPH 89 (209)
Q Consensus 72 ~~L~~L~Ls~N~l~~l~~ 89 (209)
++|+.|+.++|+|+++|.
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 457888888888888875
No 68
>KOG3665|consensus
Probab=89.09 E-value=0.35 Score=44.65 Aligned_cols=82 Identities=16% Similarity=0.114 Sum_probs=42.2
Q ss_pred ccccceeccccccccccccccCchhhcCCcccceecccccccccccCc--cccCCCCCcCEEeccCCcCcccCC------
Q psy14513 18 QYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHP--YSFNNDWSLKEFYINNNAITSLPH------ 89 (209)
Q Consensus 18 ~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~--~~f~~l~~L~~L~Ls~N~l~~l~~------ 89 (209)
|-+|..|++ |+.+++.+ .....|.+|+.|.+.+= .+..-.. +-|. +..|++||+|..+....+.
T Consensus 172 FpNL~sLDI----S~TnI~nl--~GIS~LknLq~L~mrnL-e~e~~~~l~~LF~-L~~L~vLDIS~~~~~~~~~ii~qYl 243 (699)
T KOG3665|consen 172 FPNLRSLDI----SGTNISNL--SGISRLKNLQVLSMRNL-EFESYQDLIDLFN-LKKLRVLDISRDKNNDDTKIIEQYL 243 (699)
T ss_pred cCccceeec----CCCCccCc--HHHhccccHHHHhccCC-CCCchhhHHHHhc-ccCCCeeeccccccccchHHHHHHH
Confidence 444455555 56666555 23345555555555554 3332111 2233 6677777777665544331
Q ss_pred CC-CCCCCccEEEeeCCCC
Q psy14513 90 EL-GDWDSLEVLDIQSNPW 107 (209)
Q Consensus 90 ~~-~~l~~L~~l~l~~Np~ 107 (209)
+. ..+|.|+.||.++...
T Consensus 244 ec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 244 ECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HhcccCccccEEecCCcch
Confidence 11 3467777776665433
No 69
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=88.75 E-value=0.27 Score=24.86 Aligned_cols=17 Identities=35% Similarity=0.337 Sum_probs=9.2
Q ss_pred cccceecccccccccccC
Q psy14513 47 LNLQTLYCNFNPKLTFIH 64 (209)
Q Consensus 47 ~~L~~L~Ls~n~~l~~i~ 64 (209)
.+|+.|+++.| +|+.|.
T Consensus 2 ~~L~~L~L~~N-kI~~IE 18 (26)
T smart00365 2 TNLEELDLSQN-KIKKIE 18 (26)
T ss_pred CccCEEECCCC-ccceec
Confidence 34555566666 555543
No 70
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=88.24 E-value=1.1 Score=29.60 Aligned_cols=25 Identities=8% Similarity=0.489 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCC
Q psy14513 185 TLLLITLVVYLICMSYKYARNHVPY 209 (209)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~r~~~~~ 209 (209)
.+++++++.|++|+..|+|.|..-|
T Consensus 42 ~iFil~VilwfvCC~kRkrsRrPIY 66 (94)
T PF05393_consen 42 GIFILLVILWFVCCKKRKRSRRPIY 66 (94)
T ss_pred HHHHHHHHHHHHHHHHhhhccCCcc
Confidence 3345555667777766666665444
No 71
>KOG2982|consensus
Probab=87.91 E-value=0.3 Score=40.30 Aligned_cols=79 Identities=16% Similarity=0.133 Sum_probs=54.9
Q ss_pred cccccccCc-hhhc-CCcccceecccccccccccCc--cccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCC-
Q psy14513 32 NSELYAIRK-NTFK-NLLNLQTLYCNFNPKLTFIHP--YSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSN- 105 (209)
Q Consensus 32 ~n~l~~l~~-~~f~-~l~~L~~L~Ls~n~~l~~i~~--~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~N- 105 (209)
+..|..+.. ..|+ ..+.++++||.+| .|+.+.. .....++.|+.|+|+.|.+.+.-... ..+.+|+.+-|.|.
T Consensus 54 ~~~id~~gd~~~~~~~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~ 132 (418)
T KOG2982|consen 54 GSIIDNEGDVMLFGSSVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTG 132 (418)
T ss_pred CCCCCcchhHHHHHHHhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCC
Confidence 344444432 2333 4566899999999 9988765 33556899999999999998743333 46678888888775
Q ss_pred -CCcccc
Q psy14513 106 -PWTCDC 111 (209)
Q Consensus 106 -p~~C~C 111 (209)
+|.|.-
T Consensus 133 L~w~~~~ 139 (418)
T KOG2982|consen 133 LSWTQST 139 (418)
T ss_pred CChhhhh
Confidence 566643
No 72
>KOG1909|consensus
Probab=86.57 E-value=0.22 Score=41.59 Aligned_cols=73 Identities=15% Similarity=0.174 Sum_probs=40.0
Q ss_pred ccccccccC----chhhcCCcccceecccccccccccC----ccccCCCCCcCEEeccCCcCcccC-----CCCCCCCCc
Q psy14513 31 ANSELYAIR----KNTFKNLLNLQTLYCNFNPKLTFIH----PYSFNNDWSLKEFYINNNAITSLP-----HELGDWDSL 97 (209)
Q Consensus 31 s~n~l~~l~----~~~f~~l~~L~~L~Ls~n~~l~~i~----~~~f~~l~~L~~L~Ls~N~l~~l~-----~~~~~l~~L 97 (209)
++|.+..-+ ...|+..+.|+.+.++.| .|..-. ..+|...++|++|||++|-++..- .....++.|
T Consensus 165 ~rNrlen~ga~~~A~~~~~~~~leevr~~qN-~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L 243 (382)
T KOG1909|consen 165 GRNRLENGGATALAEAFQSHPTLEEVRLSQN-GIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHL 243 (382)
T ss_pred eccccccccHHHHHHHHHhccccceEEEecc-cccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchh
Confidence 455554432 355666667777777777 554321 234555666777777777665421 111445556
Q ss_pred cEEEeeC
Q psy14513 98 EVLDIQS 104 (209)
Q Consensus 98 ~~l~l~~ 104 (209)
+.+++++
T Consensus 244 ~El~l~d 250 (382)
T KOG1909|consen 244 RELNLGD 250 (382)
T ss_pred eeecccc
Confidence 6665544
No 73
>PRK15386 type III secretion protein GogB; Provisional
Probab=86.53 E-value=1.2 Score=38.61 Aligned_cols=58 Identities=14% Similarity=0.184 Sum_probs=32.3
Q ss_pred cceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCC-cCcccCC
Q psy14513 21 IMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNN-AITSLPH 89 (209)
Q Consensus 21 l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~l~~ 89 (209)
+..|.+ +++.|..+|. + ..+|+.|.++++..++.++. .+ ..+|+.|++++| .+..+|.
T Consensus 54 l~~L~I----s~c~L~sLP~--L--P~sLtsL~Lsnc~nLtsLP~-~L--P~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 54 SGRLYI----KDCDIESLPV--L--PNELTEITIENCNNLTTLPG-SI--PEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred CCEEEe----CCCCCcccCC--C--CCCCcEEEccCCCCcccCCc-hh--hhhhhheEccCccccccccc
Confidence 344555 6667777761 1 23577777776425544432 22 245777777766 5555553
No 74
>KOG2123|consensus
Probab=86.15 E-value=0.067 Score=43.59 Aligned_cols=53 Identities=15% Similarity=0.246 Sum_probs=46.0
Q ss_pred ccccccccCchhhcCCcccceecccccccccccCc-cccCCCCCcCEEeccCCcCcc
Q psy14513 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHP-YSFNNDWSLKEFYINNNAITS 86 (209)
Q Consensus 31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~-~~f~~l~~L~~L~Ls~N~l~~ 86 (209)
|-|.|+++.+ |..++.|++|||..| .|..++. ....++++|+.|.|..|.-..
T Consensus 49 SvNkIssL~p--l~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LWL~ENPCc~ 102 (388)
T KOG2123|consen 49 SVNKISSLAP--LQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLWLDENPCCG 102 (388)
T ss_pred eccccccchh--HHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHhhccCCccc
Confidence 7899999874 567899999999999 9999987 557789999999999997654
No 75
>KOG2739|consensus
Probab=85.99 E-value=0.56 Score=37.65 Aligned_cols=62 Identities=21% Similarity=0.231 Sum_probs=45.1
Q ss_pred cCCcccceecccccccccccCccccCCCCCcCEEeccCC--cCcc-cCCCCCCCCCccEEEeeCCCCc
Q psy14513 44 KNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNN--AITS-LPHELGDWDSLEVLDIQSNPWT 108 (209)
Q Consensus 44 ~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N--~l~~-l~~~~~~l~~L~~l~l~~Np~~ 108 (209)
..+..|+.+.+.+- .++++.. |..++.|+.|.++.| +.+. ++.-...+|+|+++++++|..+
T Consensus 40 d~~~~le~ls~~n~-gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 40 DEFVELELLSVINV-GLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred ccccchhhhhhhcc-ceeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 34566777777777 6665544 455789999999999 5544 4433355699999999999764
No 76
>KOG3665|consensus
Probab=85.22 E-value=0.35 Score=44.61 Aligned_cols=59 Identities=17% Similarity=0.189 Sum_probs=32.1
Q ss_pred cCCcccceecccccccccccC-ccccCCCCCcCEEeccCCcCcccCCCCCCCCCccEEEeeC
Q psy14513 44 KNLLNLQTLYCNFNPKLTFIH-PYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQS 104 (209)
Q Consensus 44 ~~l~~L~~L~Ls~n~~l~~i~-~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~l~~ 104 (209)
.-+|+|+.|.+++- .+..-+ ...+.+.++|..||+|+.+++.+ .+++.+++|+.|.+.+
T Consensus 145 ~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrn 204 (699)
T KOG3665|consen 145 TMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRN 204 (699)
T ss_pred hhCcccceEEecCc-eecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccC
Confidence 45677777777765 433222 12344566677777777777655 2334444444443333
No 77
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=82.60 E-value=1.6 Score=31.75 Aligned_cols=44 Identities=32% Similarity=0.516 Sum_probs=19.3
Q ss_pred ccCCCceeeeeccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy14513 159 ECVKGALVISQLSTQFYKLYPLLFIMTLLLITLVVYLICMSYKYAR 204 (209)
Q Consensus 159 ~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 204 (209)
.|..+....++.++-.+. +++.++++++++++..++|.++++++
T Consensus 16 ecls~~~~psffsthm~t--ILiaIvVliiiiivli~lcssRKkKa 59 (189)
T PF05568_consen 16 ECLSPVTPPSFFSTHMYT--ILIAIVVLIIIIIVLIYLCSSRKKKA 59 (189)
T ss_pred hhcCCCCCccHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 465555444444443322 33333334444444445555544443
No 78
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=80.04 E-value=2.4 Score=31.73 Aligned_cols=29 Identities=21% Similarity=0.149 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCCC
Q psy14513 181 LFIMTLLLITLVVYLICMSYKYARNHVPY 209 (209)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 209 (209)
++++..++++++++.+++.+++.|+--+|
T Consensus 101 l~g~s~l~i~yfvir~~R~r~~~rktRkY 129 (163)
T PF06679_consen 101 LVGLSALAILYFVIRTFRLRRRNRKTRKY 129 (163)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccceee
Confidence 33334444444444444444433433344
No 79
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=78.53 E-value=0.84 Score=37.30 Aligned_cols=37 Identities=27% Similarity=0.326 Sum_probs=24.4
Q ss_pred CCCcCEEeccCCcCcc-cCCCC----CCCCCccEEEeeCCCC
Q psy14513 71 DWSLKEFYINNNAITS-LPHEL----GDWDSLEVLDIQSNPW 107 (209)
Q Consensus 71 l~~L~~L~Ls~N~l~~-l~~~~----~~l~~L~~l~l~~Np~ 107 (209)
+++|+..+||+|.++. .|+.. ..-..|.+|.+.+|-+
T Consensus 91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 5677888888887776 44333 4456677777777633
No 80
>KOG3763|consensus
Probab=77.82 E-value=1.1 Score=39.85 Aligned_cols=64 Identities=23% Similarity=0.183 Sum_probs=42.4
Q ss_pred cCCcccceecccccccccccCccc--cCCCCCcCEEeccCC--cCcccCCCC-CCCCCccEEEeeCCCCc
Q psy14513 44 KNLLNLQTLYCNFNPKLTFIHPYS--FNNDWSLKEFYINNN--AITSLPHEL-GDWDSLEVLDIQSNPWT 108 (209)
Q Consensus 44 ~~l~~L~~L~Ls~n~~l~~i~~~~--f~~l~~L~~L~Ls~N--~l~~l~~~~-~~l~~L~~l~l~~Np~~ 108 (209)
.+.+.+..+.|++| ++..++.-. -..-+.|+.|+|++| .+.+-+.-. -....|+.|-+.|||+.
T Consensus 215 ~n~p~i~sl~lsnN-rL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 215 ENFPEILSLSLSNN-RLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred cCCcceeeeecccc-hhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 45677888899999 887765521 112355999999999 444432222 23345788999999983
No 81
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=76.51 E-value=2.2 Score=35.26 Aligned_cols=17 Identities=6% Similarity=0.131 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy14513 182 FIMTLLLITLVVYLICM 198 (209)
Q Consensus 182 ~~~~~~~~~~~~~~~~~ 198 (209)
++++++++++++.|+..
T Consensus 279 ~~La~lvlivLiaYli~ 295 (306)
T PF01299_consen 279 AALAGLVLIVLIAYLIG 295 (306)
T ss_pred HHHHHHHHHHHHhheeE
Confidence 33344444444444444
No 82
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=76.48 E-value=1.6 Score=45.76 Aligned_cols=32 Identities=22% Similarity=0.260 Sum_probs=28.4
Q ss_pred cccccccccCchhhcCCcccceecccccccccc
Q psy14513 30 TANSELYAIRKNTFKNLLNLQTLYCNFNPKLTF 62 (209)
Q Consensus 30 ~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~ 62 (209)
+++|+|+.|+.+.|.+|.+|+.|+|++| .+.-
T Consensus 2 LSnN~LstLp~g~F~~L~sL~~LdLsgN-Pw~C 33 (2740)
T TIGR00864 2 ISNNKISTIEEGICANLCNLSEIDLSGN-PFEC 33 (2740)
T ss_pred CCCCcCCccChHHhccCCCceEEEeeCC-cccc
Confidence 4899999999999999999999999999 6553
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=76.19 E-value=1.3 Score=21.50 Aligned_cols=14 Identities=43% Similarity=0.425 Sum_probs=6.3
Q ss_pred cccceeccccccccc
Q psy14513 47 LNLQTLYCNFNPKLT 61 (209)
Q Consensus 47 ~~L~~L~Ls~n~~l~ 61 (209)
++|++|++++| .|+
T Consensus 2 ~~L~~L~l~~n-~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNN-QIT 15 (24)
T ss_dssp TT-SEEE-TSS-BEH
T ss_pred CCCCEEEccCC-cCC
Confidence 34555555555 443
No 84
>PRK15386 type III secretion protein GogB; Provisional
Probab=75.26 E-value=3.3 Score=35.87 Aligned_cols=56 Identities=23% Similarity=0.275 Sum_probs=40.5
Q ss_pred hcCCcccceecccccccccccCccccCCCCCcCEEeccC-CcCcccCCCCCCCCCccEEEeeCC
Q psy14513 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINN-NAITSLPHELGDWDSLEVLDIQSN 105 (209)
Q Consensus 43 f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~l~l~~N 105 (209)
+..+.++..|+++++ .++.++ .+ ..+|+.|.+++ +.++.+|..+ .++|+.|++++|
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP--~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLP--VL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccC--CC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 445788999999999 999997 22 35699999987 6777777543 135666666654
No 85
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=74.29 E-value=2.7 Score=21.38 Aligned_cols=11 Identities=36% Similarity=0.703 Sum_probs=5.0
Q ss_pred cCEEeccCCcC
Q psy14513 74 LKEFYINNNAI 84 (209)
Q Consensus 74 L~~L~Ls~N~l 84 (209)
|++|||++|.+
T Consensus 4 L~~LdL~~N~i 14 (28)
T smart00368 4 LRELDLSNNKL 14 (28)
T ss_pred cCEEECCCCCC
Confidence 44444444444
No 86
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=73.32 E-value=9.2 Score=21.45 Aligned_cols=27 Identities=15% Similarity=0.301 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy14513 179 PLLFIMTLLLITLVVYLICMSYKYARN 205 (209)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~r~ 205 (209)
.+++++.++.+.++..+.+++-..|+|
T Consensus 12 lVF~lVglv~i~iva~~iYRKw~aRkr 38 (43)
T PF08114_consen 12 LVFCLVGLVGIGIVALFIYRKWQARKR 38 (43)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666665555554333333
No 87
>KOG1909|consensus
Probab=72.01 E-value=1.4 Score=36.99 Aligned_cols=44 Identities=14% Similarity=0.150 Sum_probs=18.8
Q ss_pred hhhcCCcccceecccccccccccCc----cccCCCCCcCEEeccCCcCc
Q psy14513 41 NTFKNLLNLQTLYCNFNPKLTFIHP----YSFNNDWSLKEFYINNNAIT 85 (209)
Q Consensus 41 ~~f~~l~~L~~L~Ls~n~~l~~i~~----~~f~~l~~L~~L~Ls~N~l~ 85 (209)
.+|..+++|+.|||.+| .++.-.. .++..+++|+.++++++.+.
T Consensus 207 eal~~~~~LevLdl~DN-tft~egs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 207 EALEHCPHLEVLDLRDN-TFTLEGSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred HHHHhCCcceeeecccc-hhhhHHHHHHHHHhcccchheeecccccccc
Confidence 34444455555555555 4333211 12333334455555544443
No 88
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=71.61 E-value=5.5 Score=32.45 Aligned_cols=8 Identities=13% Similarity=0.430 Sum_probs=4.9
Q ss_pred ccccCcHh
Q psy14513 108 TCDCSIQW 115 (209)
Q Consensus 108 ~C~C~~~~ 115 (209)
.|.|.+..
T Consensus 176 i~~CsvGS 183 (295)
T TIGR01478 176 VGTCALSS 183 (295)
T ss_pred eEeeccHH
Confidence 57777643
No 89
>PTZ00370 STEVOR; Provisional
Probab=70.14 E-value=5.6 Score=32.46 Aligned_cols=8 Identities=38% Similarity=0.982 Sum_probs=4.8
Q ss_pred ccccCcHh
Q psy14513 108 TCDCSIQW 115 (209)
Q Consensus 108 ~C~C~~~~ 115 (209)
.|.|.+..
T Consensus 176 i~~CsVGS 183 (296)
T PTZ00370 176 ICSCSLGS 183 (296)
T ss_pred eEeeccHH
Confidence 56677543
No 90
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=68.53 E-value=1.6 Score=30.93 Aligned_cols=20 Identities=10% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhccCCC
Q psy14513 189 ITLVVYLICMSYKYARNHVP 208 (209)
Q Consensus 189 ~~~~~~~~~~~~~~~r~~~~ 208 (209)
+.++..++.+++.|+|++..
T Consensus 92 l~llsg~lv~rrcrrr~~~t 111 (129)
T PF12191_consen 92 LALLSGFLVWRRCRRREKFT 111 (129)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHhhhhccccCC
Confidence 33333455555555555543
No 91
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=68.48 E-value=3.1 Score=34.17 Aligned_cols=75 Identities=17% Similarity=0.089 Sum_probs=50.7
Q ss_pred hhcCCcccceecccccccccccCccc----cCCCCCcCEEeccCCcCcccCCCC--------------CCCCCccEEEee
Q psy14513 42 TFKNLLNLQTLYCNFNPKLTFIHPYS----FNNDWSLKEFYINNNAITSLPHEL--------------GDWDSLEVLDIQ 103 (209)
Q Consensus 42 ~f~~l~~L~~L~Ls~n~~l~~i~~~~----f~~l~~L~~L~Ls~N~l~~l~~~~--------------~~l~~L~~l~l~ 103 (209)
++..+++|+..+||+| .+..--+.. ......|.+|.+++|.+..+--.. .+-|.|+.+..+
T Consensus 87 aLlkcp~l~~v~LSDN-Afg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 87 ALLKCPRLQKVDLSDN-AFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHhcCCcceeeecccc-ccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 4556789999999999 766533322 233455999999999887654322 345788888888
Q ss_pred CCCCccccCcHhHH
Q psy14513 104 SNPWTCDCSIQWLI 117 (209)
Q Consensus 104 ~Np~~C~C~~~~~~ 117 (209)
.|.+.-...-.|-.
T Consensus 166 rNRlengs~~~~a~ 179 (388)
T COG5238 166 RNRLENGSKELSAA 179 (388)
T ss_pred cchhccCcHHHHHH
Confidence 88886544444433
No 92
>PF09577 Spore_YpjB: Sporulation protein YpjB (SpoYpjB); InterPro: IPR014231 Proteins in thie entry, typified by YpjB, are restricted to a subset of the endospore-forming bacteria which includes Bacillus species, but not species. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon []. Sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect, but this gene is not, however, a part of the endospore formation minimal gene set.
Probab=65.28 E-value=12 Score=29.75 Aligned_cols=33 Identities=12% Similarity=-0.030 Sum_probs=26.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy14513 173 QFYKLYPLLFIMTLLLITLVVYLICMSYKYARN 205 (209)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 205 (209)
..+|+++.++.++++.+.+++|.-++..+.+++
T Consensus 198 sl~Wv~l~iG~iIi~tLtYvGwRKYrgek~~~k 230 (232)
T PF09577_consen 198 SLIWVMLSIGGIIIATLTYVGWRKYRGEKEKRK 230 (232)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346777888888999999999888887777665
No 93
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=61.61 E-value=4.5 Score=31.53 Aligned_cols=14 Identities=36% Similarity=0.719 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q psy14513 184 MTLLLITLVVYLIC 197 (209)
Q Consensus 184 ~~~~~~~~~~~~~~ 197 (209)
++++++++++.++|
T Consensus 48 ~tVILVI~i~v~vR 61 (221)
T PF08374_consen 48 MTVILVIFIVVLVR 61 (221)
T ss_pred hhhHHHHHHHHHHH
Confidence 34444444444444
No 94
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=59.22 E-value=3 Score=28.61 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q psy14513 177 LYPLLFIMTLLLITLVVYLICM 198 (209)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~ 198 (209)
+++++.++.++++++++||+.-
T Consensus 65 li~lls~v~IlVily~IyYFVI 86 (101)
T PF06024_consen 65 LISLLSFVCILVILYAIYYFVI 86 (101)
T ss_pred HHHHHHHHHHHHHHhhheEEEE
Confidence 3333444444555555555443
No 95
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=58.19 E-value=19 Score=25.58 Aligned_cols=27 Identities=11% Similarity=0.104 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy14513 179 PLLFIMTLLLITLVVYLICMSYKYARN 205 (209)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~r~ 205 (209)
+.+++.+++.++..+.++.+..+|+|+
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y~irR~~K 93 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISYCIRRLRK 93 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333333333444444444444444444
No 96
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=56.57 E-value=12 Score=31.58 Aligned_cols=25 Identities=16% Similarity=0.293 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q psy14513 179 PLLFIMTLLLITLVVYLICMSYKYA 203 (209)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (209)
+++++++++++++++...||..+.+
T Consensus 318 AIvvIVLIMvIIYLILRYRRKKKMk 342 (353)
T TIGR01477 318 AILIIVLIMVIIYLILRYRRKKKMK 342 (353)
T ss_pred HHHHHHHHHHHHHHHHHhhhcchhH
Confidence 4444555566677766666655443
No 97
>PTZ00046 rifin; Provisional
Probab=56.33 E-value=12 Score=31.69 Aligned_cols=25 Identities=12% Similarity=0.252 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q psy14513 179 PLLFIMTLLLITLVVYLICMSYKYA 203 (209)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (209)
+++++++++++++++...||..+.+
T Consensus 323 AIvVIVLIMvIIYLILRYRRKKKMk 347 (358)
T PTZ00046 323 AIVVIVLIMVIIYLILRYRRKKKMK 347 (358)
T ss_pred HHHHHHHHHHHHHHHHHhhhcchhH
Confidence 4444555566667666666655443
No 98
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=55.76 E-value=21 Score=22.52 Aligned_cols=30 Identities=13% Similarity=0.029 Sum_probs=12.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy14513 175 YKLYPLLFIMTLLLITLVVYLICMSYKYAR 204 (209)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 204 (209)
+..+.++..++..++.++.-+.+..++.||
T Consensus 33 W~aIGvi~gi~~~~lt~ltN~YFK~k~drr 62 (68)
T PF04971_consen 33 WAAIGVIGGIFFGLLTYLTNLYFKIKEDRR 62 (68)
T ss_pred chhHHHHHHHHHHHHHHHhHhhhhhhHhhh
Confidence 333444444444444444444444344443
No 99
>PF15106 TMEM156: TMEM156 protein family
Probab=55.52 E-value=18 Score=28.18 Aligned_cols=34 Identities=21% Similarity=0.390 Sum_probs=22.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q psy14513 173 QFYKLYPLLFIMTLLLITLVVYLICMSYKYARNH 206 (209)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 206 (209)
.-+.+++++.++.++++++++|-+....||.++|
T Consensus 174 mKITWYvLVllVfiflii~iI~KIle~hrrvqkw 207 (226)
T PF15106_consen 174 MKITWYVLVLLVFIFLIILIIYKILEGHRRVQKW 207 (226)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHH
Confidence 3344566666777777888888777666655544
No 100
>TIGR02878 spore_ypjB sporulation protein YpjB. Members of this protein, YpjB, family are restricted to a subset of endospore-forming bacteria, including Bacillus species but not CLostridium or some others. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon, where sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect. This protein family is not, however, a part of the endospore formation minimal gene set.
Probab=54.84 E-value=15 Score=29.02 Aligned_cols=35 Identities=9% Similarity=-0.128 Sum_probs=28.4
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy14513 171 STQFYKLYPLLFIMTLLLITLVVYLICMSYKYARN 205 (209)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 205 (209)
.+..+|+++.+++++++.+.+++|.-++.-+.+++
T Consensus 197 DPSLiWvmistGg~IvltLTYVGwRKYkgEKek~k 231 (233)
T TIGR02878 197 DPSLLWVMISTGGIIVATLTYVGWRKYKGEKEKVK 231 (233)
T ss_pred CcHHHHHHHHhhHHHHHHHhhhhhhhhhhHhhhhc
Confidence 45567888888899999999999888887776665
No 101
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=54.14 E-value=3.2 Score=28.91 Aligned_cols=27 Identities=11% Similarity=0.167 Sum_probs=0.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy14513 179 PLLFIMTLLLITLVVYLICMSYKYARN 205 (209)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~r~ 205 (209)
.++.+++.+++++.-||.++|..|++-
T Consensus 30 GiL~VILgiLLliGCWYckRRSGYk~L 56 (118)
T PF14991_consen 30 GILIVILGILLLIGCWYCKRRSGYKTL 56 (118)
T ss_dssp S--------------------------
T ss_pred eeHHHHHHHHHHHhheeeeecchhhhh
Confidence 444444555555555666666555543
No 102
>PF11857 DUF3377: Domain of unknown function (DUF3377); InterPro: IPR021805 This domain is functionally uncharacterised and found at the C terminus of peptidases belonging to MEROPS peptidase family M10A, membrane-type matrix metallopeptidases (clan MA). ; GO: 0004222 metalloendopeptidase activity
Probab=53.18 E-value=4.5 Score=25.91 Aligned_cols=29 Identities=14% Similarity=0.284 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCCC
Q psy14513 181 LFIMTLLLITLVVYLICMSYKYARNHVPY 209 (209)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 209 (209)
.++++++++.++..++.++++...|++-|
T Consensus 37 Pl~L~LCiLvl~yai~~fkrkGtPr~llY 65 (74)
T PF11857_consen 37 PLVLLLCILVLIYAIFQFKRKGTPRRLLY 65 (74)
T ss_pred HHHHHHHHHHHHHHhheeeecCCCcEEEE
Confidence 33334444444444444555555555443
No 103
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=53.07 E-value=20 Score=27.86 Aligned_cols=16 Identities=31% Similarity=0.262 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHh
Q psy14513 185 TLLLITLVVYLICMSY 200 (209)
Q Consensus 185 ~~~~~~~~~~~~~~~~ 200 (209)
.+++++....|+++.|
T Consensus 112 lLla~~~~~~Y~~~~R 127 (202)
T PF06365_consen 112 LLLAILLGAGYCCHQR 127 (202)
T ss_pred HHHHHHHHHHHHhhhh
Confidence 3333333333444433
No 104
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=51.92 E-value=27 Score=25.60 Aligned_cols=22 Identities=23% Similarity=0.096 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy14513 179 PLLFIMTLLLITLVVYLICMSY 200 (209)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~ 200 (209)
+.+++.++++++.++|.+.|+-
T Consensus 122 ~~~i~g~ll~i~~giy~~~r~~ 143 (145)
T PF10661_consen 122 LLSIGGILLAICGGIYVVLRKV 143 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3334445566666666666543
No 105
>PRK01844 hypothetical protein; Provisional
Probab=51.65 E-value=40 Score=21.52 Aligned_cols=20 Identities=15% Similarity=0.178 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy14513 179 PLLFIMTLLLITLVVYLICM 198 (209)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~ 198 (209)
+++.++++++.+++.+|+-+
T Consensus 7 I~l~I~~li~G~~~Gff~ar 26 (72)
T PRK01844 7 ILVGVVALVAGVALGFFIAR 26 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444443
No 106
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=51.11 E-value=31 Score=22.94 Aligned_cols=29 Identities=17% Similarity=0.006 Sum_probs=19.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy14513 175 YKLYPLLFIMTLLLITLVVYLICMSYKYA 203 (209)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (209)
++++++..+.+++++..++....+++-|+
T Consensus 35 m~~lvI~~iFil~VilwfvCC~kRkrsRr 63 (94)
T PF05393_consen 35 MWFLVICGIFILLVILWFVCCKKRKRSRR 63 (94)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 35566677777777777777777666554
No 107
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=50.36 E-value=22 Score=25.42 Aligned_cols=24 Identities=8% Similarity=0.195 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q psy14513 179 PLLFIMTLLLITLVVYLICMSYKY 202 (209)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~ 202 (209)
+++++.+++++..+.++++++.|+
T Consensus 105 ~il~il~~i~is~~~~~~yr~~r~ 128 (139)
T PHA03099 105 GIVLVLVGIIITCCLLSVYRFTRR 128 (139)
T ss_pred HHHHHHHHHHHHHHHHhhheeeec
Confidence 333333444444444555544333
No 108
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=48.47 E-value=29 Score=20.17 Aligned_cols=13 Identities=31% Similarity=0.552 Sum_probs=5.5
Q ss_pred HHHHHHHHHHhhh
Q psy14513 190 TLVVYLICMSYKY 202 (209)
Q Consensus 190 ~~~~~~~~~~~~~ 202 (209)
.+++.|+|..+||
T Consensus 13 lv~~gy~~hmkry 25 (54)
T PF13260_consen 13 LVVVGYFCHMKRY 25 (54)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444433
No 109
>KOG3763|consensus
Probab=47.77 E-value=9.6 Score=34.12 Aligned_cols=65 Identities=18% Similarity=0.269 Sum_probs=43.4
Q ss_pred CcccccceeccccccccccccccCc--hhhcCCcccceecccccccccc---cCccccCCCCCcCEEeccCCcCcc
Q psy14513 16 DTQYTIMKVQLPYSTANSELYAIRK--NTFKNLLNLQTLYCNFNPKLTF---IHPYSFNNDWSLKEFYINNNAITS 86 (209)
Q Consensus 16 ~~~~~l~~L~ll~~~s~n~l~~l~~--~~f~~l~~L~~L~Ls~n~~l~~---i~~~~f~~l~~L~~L~Ls~N~l~~ 86 (209)
+.+-.+..+.+ ++|++..+.. ..-..-++|+.|+|++| .... ..-+.++ ...|+.|.+.+|.+.+
T Consensus 215 ~n~p~i~sl~l----snNrL~~Ld~~sslsq~apklk~L~LS~N-~~~~~~~~el~K~k-~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 215 ENFPEILSLSL----SNNRLYHLDALSSLSQIAPKLKTLDLSHN-HSKISSESELDKLK-GLPLEELVLEGNPLCT 284 (585)
T ss_pred cCCcceeeeec----ccchhhchhhhhHHHHhcchhheeecccc-hhhhcchhhhhhhc-CCCHHHeeecCCcccc
Confidence 33444445555 9999998874 22235678999999998 4322 2223344 4669999999999976
No 110
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=47.44 E-value=23 Score=29.29 Aligned_cols=26 Identities=27% Similarity=0.674 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhc-cCCC
Q psy14513 183 IMTLLLITLVVYLICMSYKYAR-NHVP 208 (209)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~r-~~~~ 208 (209)
+++++++++++.+++.--|||| +.|+
T Consensus 262 iiaIliIVLIMvIIYLILRYRRKKKmk 288 (299)
T PF02009_consen 262 IIAILIIVLIMVIIYLILRYRRKKKMK 288 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3344444445555666666666 4443
No 111
>KOG0473|consensus
Probab=46.63 E-value=0.35 Score=38.57 Aligned_cols=73 Identities=19% Similarity=0.147 Sum_probs=54.4
Q ss_pred ccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccEEEeeCCCC
Q psy14513 33 SELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPW 107 (209)
Q Consensus 33 n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~l~~Np~ 107 (209)
..++.++-.........+.||++.| ++..+... |+-+..+..+|++.|.+.-+|.+.+.+..+..+++.+|..
T Consensus 28 s~~s~~~v~ei~~~kr~tvld~~s~-r~vn~~~n-~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~ 100 (326)
T KOG0473|consen 28 SELSEIPVREIASFKRVTVLDLSSN-RLVNLGKN-FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNH 100 (326)
T ss_pred HHhcccchhhhhccceeeeehhhhh-HHHhhccc-hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccch
Confidence 4455565544455567888999999 87776665 4447889999999999999998887777777777777643
No 112
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=46.28 E-value=6.7 Score=34.30 Aligned_cols=19 Identities=16% Similarity=0.509 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q psy14513 185 TLLLITLVVYLICMSYKYA 203 (209)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~ 203 (209)
+++++++++.++|.++++|
T Consensus 363 vlivVv~viv~vc~~~rrr 381 (439)
T PF02480_consen 363 VLIVVVGVIVWVCLRCRRR 381 (439)
T ss_dssp -------------------
T ss_pred HHHHHHHHHhheeeeehhc
Confidence 3333333333333333333
No 113
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.14 E-value=55 Score=20.77 Aligned_cols=23 Identities=22% Similarity=0.236 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy14513 178 YPLLFIMTLLLITLVVYLICMSY 200 (209)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~ 200 (209)
.+++.++.+++.+++.+++-+++
T Consensus 6 ail~ivl~ll~G~~~G~fiark~ 28 (71)
T COG3763 6 AILLIVLALLAGLIGGFFIARKQ 28 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555554443
No 114
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=45.53 E-value=15 Score=17.94 Aligned_cols=11 Identities=27% Similarity=0.018 Sum_probs=7.7
Q ss_pred cccceeccccc
Q psy14513 47 LNLQTLYCNFN 57 (209)
Q Consensus 47 ~~L~~L~Ls~n 57 (209)
++|++|+++++
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 46777777776
No 115
>KOG3864|consensus
Probab=45.26 E-value=3.4 Score=32.21 Aligned_cols=81 Identities=12% Similarity=0.071 Sum_probs=51.8
Q ss_pred ccccccccccCchhhcCCcccceecccccccccccCcccc-CCCCCcCEEeccCC-cCcccCCCC-CCCCCccEEEeeCC
Q psy14513 29 STANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSF-NNDWSLKEFYINNN-AITSLPHEL-GDWDSLEVLDIQSN 105 (209)
Q Consensus 29 ~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f-~~l~~L~~L~Ls~N-~l~~l~~~~-~~l~~L~~l~l~~N 105 (209)
+.++..|....=+.+++++.++.|.+.++..+.-..-+.. ...++|+.|++++| +++.--... ..+++|+.|.+.+=
T Consensus 107 DAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 107 DASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDL 186 (221)
T ss_pred ecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCc
Confidence 4478888888888888899998888777622222111111 12567999999966 455432222 56778888877775
Q ss_pred CCcc
Q psy14513 106 PWTC 109 (209)
Q Consensus 106 p~~C 109 (209)
|..-
T Consensus 187 ~~v~ 190 (221)
T KOG3864|consen 187 PYVA 190 (221)
T ss_pred hhhh
Confidence 5543
No 116
>KOG2120|consensus
Probab=43.33 E-value=9.9 Score=31.71 Aligned_cols=58 Identities=19% Similarity=-0.003 Sum_probs=37.9
Q ss_pred CCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC----CCCCCccEEEeeC
Q psy14513 45 NLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL----GDWDSLEVLDIQS 104 (209)
Q Consensus 45 ~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~----~~l~~L~~l~l~~ 104 (209)
..++|.+|||++|..++.=-...|...+.|+++.++++- .+++.. .+.|+|.+|++.|
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY--~i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY--DIIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHhcchheeeehhhhc--CCChHHeeeeccCcceEEEEecc
Confidence 568889999999834443222334446778888887652 233322 6788999999866
No 117
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=42.44 E-value=6.6 Score=30.02 Aligned_cols=10 Identities=20% Similarity=0.122 Sum_probs=4.1
Q ss_pred cccccCcccc
Q psy14513 59 KLTFIHPYSF 68 (209)
Q Consensus 59 ~l~~i~~~~f 68 (209)
.--++.+..|
T Consensus 39 Y~ITWd~~~f 48 (189)
T PF14610_consen 39 YYITWDPSFF 48 (189)
T ss_pred EEEEEChhhc
Confidence 3333444444
No 118
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=41.37 E-value=26 Score=32.80 Aligned_cols=22 Identities=14% Similarity=0.285 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhc
Q psy14513 183 IMTLLLITLVVYLICMSYKYAR 204 (209)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~r 204 (209)
+++++++++++||+|+++.+.|
T Consensus 284 livl~lL~vLl~yCrrkc~~~r 305 (807)
T PF10577_consen 284 LIVLILLCVLLCYCRRKCLKPR 305 (807)
T ss_pred HHHHHHHHHHHHhhhcccCCcc
Confidence 3444555555555555444444
No 119
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=40.14 E-value=40 Score=26.66 Aligned_cols=22 Identities=18% Similarity=0.416 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy14513 178 YPLLFIMTLLLITLVVYLICMS 199 (209)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~ 199 (209)
++++++.+.++.++..|++||.
T Consensus 195 IaliVitl~vf~LvgLyr~C~k 216 (259)
T PF07010_consen 195 IALIVITLSVFTLVGLYRMCWK 216 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 3344444444455555555553
No 120
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=40.05 E-value=41 Score=27.56 Aligned_cols=8 Identities=25% Similarity=0.904 Sum_probs=5.1
Q ss_pred CCccccCc
Q psy14513 106 PWTCDCSI 113 (209)
Q Consensus 106 p~~C~C~~ 113 (209)
.-.|+|..
T Consensus 142 ss~cectd 149 (295)
T TIGR01478 142 DKSCECTN 149 (295)
T ss_pred CCceeeec
Confidence 35677764
No 121
>PRK00523 hypothetical protein; Provisional
Probab=39.98 E-value=76 Score=20.27 Aligned_cols=16 Identities=19% Similarity=0.366 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q psy14513 183 IMTLLLITLVVYLICM 198 (209)
Q Consensus 183 ~~~~~~~~~~~~~~~~ 198 (209)
++++++.+++.+|+-+
T Consensus 12 i~~li~G~~~Gffiar 27 (72)
T PRK00523 12 IPLLIVGGIIGYFVSK 27 (72)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444433
No 122
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=38.63 E-value=48 Score=24.85 Aligned_cols=26 Identities=15% Similarity=0.502 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccC
Q psy14513 181 LFIMTLLLITLVVYLICMSYKYARNH 206 (209)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~r~~ 206 (209)
+.+++++..++++|++.+..|-+|+.
T Consensus 98 ~~Vl~g~s~l~i~yfvir~~R~r~~~ 123 (163)
T PF06679_consen 98 LYVLVGLSALAILYFVIRTFRLRRRN 123 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 44555555555555555555555544
No 123
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=38.26 E-value=62 Score=20.11 Aligned_cols=29 Identities=10% Similarity=0.148 Sum_probs=15.0
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy14513 171 STQFYKLYPLLFIMTLLLITLVVYLICMS 199 (209)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (209)
+.+.++++++...++++++.-.+.|.++.
T Consensus 11 nPGlIVLlvV~g~ll~flvGnyvlY~Yaq 39 (69)
T PF04689_consen 11 NPGLIVLLVVAGLLLVFLVGNYVLYVYAQ 39 (69)
T ss_pred CCCeEEeehHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555555555555555555543
No 124
>PHA02902 putative IMV membrane protein; Provisional
Probab=36.81 E-value=65 Score=20.03 Aligned_cols=17 Identities=18% Similarity=0.575 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy14513 184 MTLLLITLVVYLICMSY 200 (209)
Q Consensus 184 ~~~~~~~~~~~~~~~~~ 200 (209)
+.++++++++|..++|.
T Consensus 11 v~v~Ivclliya~YrR~ 27 (70)
T PHA02902 11 VIVIIFCLLIYAAYKRY 27 (70)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34444455555444444
No 125
>KOG1219|consensus
Probab=36.80 E-value=62 Score=34.80 Aligned_cols=14 Identities=21% Similarity=0.356 Sum_probs=9.2
Q ss_pred EEeeCCCCccccCc
Q psy14513 100 LDIQSNPWTCDCSI 113 (209)
Q Consensus 100 l~l~~Np~~C~C~~ 113 (209)
=...+|-+.|.|+.
T Consensus 3917 Cip~~n~f~CnC~~ 3930 (4289)
T KOG1219|consen 3917 CIPFYNGFLCNCPN 3930 (4289)
T ss_pred EEecCCCeeEeCCC
Confidence 34566677777774
No 126
>PF15298 AJAP1_PANP_C: AJAP1/PANP C-terminus
Probab=36.27 E-value=20 Score=27.61 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccC
Q psy14513 181 LFIMTLLLITLVVYLICMSYKYARNH 206 (209)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~r~~ 206 (209)
++|++++++.-+++-+|+-|..++|+
T Consensus 108 lImViaAliTtlvlK~C~~~s~~~r~ 133 (205)
T PF15298_consen 108 LIMVIAALITTLVLKNCCAQSQNRRR 133 (205)
T ss_pred hhHHHHHhhhhhhhhhhhhhhcccCC
Confidence 44445554555555556555444443
No 127
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=35.66 E-value=48 Score=25.44 Aligned_cols=27 Identities=11% Similarity=0.054 Sum_probs=14.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHh
Q psy14513 174 FYKLYPLLFIMTLLLITLVVYLICMSY 200 (209)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (209)
|.....+.++++++.+..++|+.+.++
T Consensus 158 FD~~SFiGGIVL~LGv~aI~ff~~KF~ 184 (186)
T PF05283_consen 158 FDAASFIGGIVLTLGVLAIIFFLYKFC 184 (186)
T ss_pred CchhhhhhHHHHHHHHHHHHHHHhhhc
Confidence 444445555555555555555555544
No 128
>PF15102 TMEM154: TMEM154 protein family
Probab=35.33 E-value=11 Score=27.55 Aligned_cols=6 Identities=33% Similarity=0.235 Sum_probs=2.9
Q ss_pred hHHHHH
Q psy14513 177 LYPLLF 182 (209)
Q Consensus 177 ~~~~~~ 182 (209)
+++++-
T Consensus 59 LmIlIP 64 (146)
T PF15102_consen 59 LMILIP 64 (146)
T ss_pred EEEeHH
Confidence 345555
No 129
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=35.23 E-value=12 Score=26.55 Aligned_cols=20 Identities=10% Similarity=0.031 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q psy14513 184 MTLLLITLVVYLICMSYKYA 203 (209)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~ 203 (209)
+++.+++.++++.+.|+|++
T Consensus 90 lVl~llsg~lv~rrcrrr~~ 109 (129)
T PF12191_consen 90 LVLALLSGFLVWRRCRRREK 109 (129)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHhhhhcccc
Confidence 34555556666666666654
No 130
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=34.27 E-value=75 Score=19.97 Aligned_cols=17 Identities=29% Similarity=0.399 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy14513 185 TLLLITLVVYLICMSYK 201 (209)
Q Consensus 185 ~~~~~~~~~~~~~~~~~ 201 (209)
-++++.+++|-++.+.+
T Consensus 11 CVaii~lIlY~iYnr~~ 27 (68)
T PF05961_consen 11 CVAIIGLILYGIYNRKK 27 (68)
T ss_pred HHHHHHHHHHHHHhccc
Confidence 33344444444444433
No 131
>PF15345 TMEM51: Transmembrane protein 51
Probab=33.61 E-value=38 Score=26.86 Aligned_cols=12 Identities=17% Similarity=0.086 Sum_probs=4.8
Q ss_pred HHHHHHhhhhcc
Q psy14513 194 YLICMSYKYARN 205 (209)
Q Consensus 194 ~~~~~~~~~~r~ 205 (209)
++-.+.+|++|+
T Consensus 77 CL~IR~KRr~rq 88 (233)
T PF15345_consen 77 CLSIRDKRRRRQ 88 (233)
T ss_pred HHHHHHHHHHhh
Confidence 333343444443
No 132
>PF05337 CSF-1: Macrophage colony stimulating factor-1 (CSF-1); InterPro: IPR008001 Colony stimulating factor 1 (CSF-1) is a homodimeric polypeptide growth factor whose primary function is to regulate the survival, proliferation, differentiation, and function of cells of the mononuclear phagocytic lineage. This lineage includes mononuclear phagocytic precursors, blood monocytes, tissue macrophages, osteoclasts, and microglia of the brain, all of which possess cell surface receptors for CSF-1. The protein has also been linked with male fertility [] and mutations in the Csf-1 gene have been found to cause osteopetrosis and failure of tooth eruption [].; GO: 0005125 cytokine activity, 0008083 growth factor activity, 0016021 integral to membrane; PDB: 3EJJ_A.
Probab=33.54 E-value=14 Score=30.04 Aligned_cols=25 Identities=12% Similarity=0.138 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcc
Q psy14513 181 LFIMTLLLITLVVYLICMSYKYARN 205 (209)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~r~ 205 (209)
.-.++++++++....||++++|.++
T Consensus 232 VPSiILVLLaVGGLLfYr~rrRs~~ 256 (285)
T PF05337_consen 232 VPSIILVLLAVGGLLFYRRRRRSHR 256 (285)
T ss_dssp -------------------------
T ss_pred ccchhhhhhhccceeeecccccccc
Confidence 3344455555555555555444433
No 133
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=33.29 E-value=98 Score=21.75 Aligned_cols=12 Identities=25% Similarity=0.401 Sum_probs=4.9
Q ss_pred HHHhhhhccCCC
Q psy14513 197 CMSYKYARNHVP 208 (209)
Q Consensus 197 ~~~~~~~r~~~~ 208 (209)
|++.-++|+...
T Consensus 111 cRr~arrR~~~s 122 (126)
T PF03229_consen 111 CRRAARRRQRVS 122 (126)
T ss_pred HHHHHHhhccch
Confidence 333334444443
No 134
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=33.05 E-value=66 Score=19.80 Aligned_cols=6 Identities=17% Similarity=0.550 Sum_probs=2.3
Q ss_pred HHHHHH
Q psy14513 193 VYLICM 198 (209)
Q Consensus 193 ~~~~~~ 198 (209)
+++.++
T Consensus 26 i~~ayr 31 (60)
T COG4736 26 IYFAYR 31 (60)
T ss_pred HHHHhc
Confidence 333333
No 135
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=33.04 E-value=1e+02 Score=22.06 Aligned_cols=28 Identities=0% Similarity=0.071 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy14513 178 YPLLFIMTLLLITLVVYLICMSYKYARN 205 (209)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 205 (209)
.++++..+.+++.+.+.|+|-+++..+.
T Consensus 48 L~vmgfFgff~~gImlsyvRSKK~E~s~ 75 (129)
T PF02060_consen 48 LVVMGFFGFFTVGIMLSYVRSKKREHSH 75 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 3444555566666666777776655544
No 136
>COG2149 Predicted membrane protein [Function unknown]
Probab=30.93 E-value=1.3e+02 Score=21.19 Aligned_cols=30 Identities=17% Similarity=0.097 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCCC
Q psy14513 179 PLLFIMTLLLITLVVYLICMSYKYARNHVP 208 (209)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 208 (209)
++++++.+++++.....+.+..+.-||+..
T Consensus 61 ~fii~~gil~~a~g~~r~~~~~~amrr~~~ 90 (120)
T COG2149 61 VFLILVGILLAALGALRWQRVERAMRRGFY 90 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 444455555555555555555555555544
No 137
>PHA03049 IMV membrane protein; Provisional
Probab=30.26 E-value=91 Score=19.53 Aligned_cols=16 Identities=31% Similarity=0.459 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHh
Q psy14513 185 TLLLITLVVYLICMSY 200 (209)
Q Consensus 185 ~~~~~~~~~~~~~~~~ 200 (209)
-++++.+++|-++.++
T Consensus 11 CVaIi~lIvYgiYnkk 26 (68)
T PHA03049 11 CVVIIGLIVYGIYNKK 26 (68)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 3344444445444433
No 138
>PF15065 NCU-G1: Lysosomal transcription factor, NCU-G1
Probab=29.61 E-value=20 Score=30.40 Aligned_cols=29 Identities=21% Similarity=0.375 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy14513 177 LYPLLFIMTLLLITLVVYLICMSYKYARN 205 (209)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 205 (209)
++++..++.++++++...|+|.+++++|+
T Consensus 322 i~~vgLG~P~l~li~Ggl~v~~~r~r~~~ 350 (350)
T PF15065_consen 322 IMAVGLGVPLLLLILGGLYVCLRRRRKRK 350 (350)
T ss_pred HHHHHhhHHHHHHHHhhheEEEeccccCC
Confidence 33344444556666666677776666553
No 139
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=28.70 E-value=93 Score=20.26 Aligned_cols=16 Identities=19% Similarity=0.401 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHhhhh
Q psy14513 188 LITLVVYLICMSYKYA 203 (209)
Q Consensus 188 ~~~~~~~~~~~~~~~~ 203 (209)
++++++.|+|.+.+++
T Consensus 48 LLIv~~vy~car~r~r 63 (79)
T PF07213_consen 48 LLIVLVVYYCARPRRR 63 (79)
T ss_pred HHHHHHHHhhcccccC
Confidence 3333334444443333
No 140
>KOG3864|consensus
Probab=28.49 E-value=23 Score=27.75 Aligned_cols=69 Identities=17% Similarity=0.235 Sum_probs=50.7
Q ss_pred ccceecccccccccccCccccCCCCCcCEEeccCCcCcccCC----CC-CCCCCccEEEeeCCCCccccCcHhHHHH
Q psy14513 48 NLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPH----EL-GDWDSLEVLDIQSNPWTCDCSIQWLIDY 119 (209)
Q Consensus 48 ~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~----~~-~~l~~L~~l~l~~Np~~C~C~~~~~~~~ 119 (209)
.++.+|-++. .|..+.-+.+.++.+++.+.+.+..- +.. .+ +..++|+.|+++++|=.-+-.+.|+..+
T Consensus 102 ~IeaVDAsds-~I~~eGle~L~~l~~i~~l~l~~ck~--~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~l 175 (221)
T KOG3864|consen 102 KIEAVDASDS-SIMYEGLEHLRDLRSIKSLSLANCKY--FDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKL 175 (221)
T ss_pred eEEEEecCCc-hHHHHHHHHHhccchhhhheeccccc--hhhHHHHHhcccccchheeeccCCCeechhHHHHHHHh
Confidence 4788999999 99998888888888888887765532 221 12 4578999999999776665566666654
No 141
>PF11157 DUF2937: Protein of unknown function (DUF2937); InterPro: IPR022584 This family of proteins with unknown function appears to be found mainly in Proteobacteria.
Probab=27.71 E-value=98 Score=23.22 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcc
Q psy14513 181 LFIMTLLLITLVVYLICMSYKYARN 205 (209)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~r~ 205 (209)
.++++.+++-++...+++..+++|+
T Consensus 142 g~l~~~~l~~~l~~l~~~~~rr~rr 166 (167)
T PF11157_consen 142 GALLGALLVELLLGLLRRPFRRRRR 166 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccC
Confidence 3333344444444555555444443
No 142
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=27.58 E-value=20 Score=29.50 Aligned_cols=22 Identities=9% Similarity=-0.047 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy14513 179 PLLFIMTLLLITLVVYLICMSY 200 (209)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~ 200 (209)
++++++++++++++++|.++|.
T Consensus 154 VI~~iLLIA~iIa~icyrrkR~ 175 (290)
T PF05454_consen 154 VIAAILLIAGIIACICYRRKRK 175 (290)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHhhhhhhc
Confidence 3344444445555555555543
No 143
>KOG1026|consensus
Probab=27.48 E-value=42 Score=31.51 Aligned_cols=75 Identities=32% Similarity=0.501 Sum_probs=47.4
Q ss_pred CCcccceecccccccccccCccccCCCCCcCEEeccCCc---CcccCCCCCCCCCccEEEeeCCCCccccCcHhHHHHH
Q psy14513 45 NLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNA---ITSLPHELGDWDSLEVLDIQSNPWTCDCSIQWLIDYV 120 (209)
Q Consensus 45 ~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~---l~~l~~~~~~l~~L~~l~l~~Np~~C~C~~~~~~~~~ 120 (209)
+...++.+..-.. .+....+..|...+.+...+++.+. ++.++.....-..+..+.+.+||+.|.|...|+..|-
T Consensus 83 ~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~ 160 (774)
T KOG1026|consen 83 NYTGLRNLTIVVS-GLRFSQPRAFHYNSRLRRDNLSTNDTGVLGSLSTNGFETLSLTELSLVGNPFTCSCSIRWLDRYR 160 (774)
T ss_pred cchhhhccCcccc-hhheecccceeccccccccccchhhhccccccccccccccccchhhhccCCCCcchhhhHHhhhc
Confidence 3344444444444 4555666666667778888888888 4444443322223445556669999999999988653
No 144
>KOG1094|consensus
Probab=27.44 E-value=1.4e+02 Score=27.61 Aligned_cols=21 Identities=10% Similarity=0.246 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q psy14513 177 LYPLLFIMTLLLITLVVYLIC 197 (209)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~ 197 (209)
+++++++++++++++++.++|
T Consensus 394 ~~~f~~if~iva~ii~~~L~R 414 (807)
T KOG1094|consen 394 IIIFVAIFLIVALIIALMLWR 414 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333434444444444444
No 145
>KOG2120|consensus
Probab=27.05 E-value=7.8 Score=32.29 Aligned_cols=15 Identities=20% Similarity=0.208 Sum_probs=9.5
Q ss_pred CCCCCccEEEeeCCC
Q psy14513 92 GDWDSLEVLDIQSNP 106 (209)
Q Consensus 92 ~~l~~L~~l~l~~Np 106 (209)
...+.+.+|||++|-
T Consensus 310 ~rcp~l~~LDLSD~v 324 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSV 324 (419)
T ss_pred HhCCceeeecccccc
Confidence 345667777877653
No 146
>PHA03240 envelope glycoprotein M; Provisional
Probab=26.69 E-value=92 Score=24.49 Aligned_cols=8 Identities=13% Similarity=0.405 Sum_probs=3.2
Q ss_pred HHHHHHhh
Q psy14513 194 YLICMSYK 201 (209)
Q Consensus 194 ~~~~~~~~ 201 (209)
++++.-||
T Consensus 229 ~cfKiPQK 236 (258)
T PHA03240 229 FFFKIPQK 236 (258)
T ss_pred HHHhccHH
Confidence 33443333
No 147
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=26.43 E-value=75 Score=23.41 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy14513 178 YPLLFIMTLLLITLVVYLICMSY 200 (209)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~ 200 (209)
.++++++++++++.++.|.+.|.
T Consensus 20 ~~~i~~ll~~l~~~~~~Y~r~r~ 42 (149)
T PF11694_consen 20 YILIIILLLVLIFFFIKYLRNRL 42 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444444444444444554443
No 148
>PF05510 Sarcoglycan_2: Sarcoglycan alpha/epsilon; InterPro: IPR008908 Sarcoglycans are a subcomplex of transmembrane proteins which are part of the dystrophin-glycoprotein complex. They are expressed in the skeletal, cardiac and smooth muscle. Although numerous studies have been conducted on the sarcoglycan subcomplex in skeletal and cardiac muscle, the manner of the distribution and localisation of these proteins along the nonjunctional sarcolemma is not clear []. This family contains alpha and epsilon members.; GO: 0016012 sarcoglycan complex
Probab=25.90 E-value=84 Score=27.06 Aligned_cols=23 Identities=30% Similarity=0.723 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy14513 178 YPLLFIMTLLLITLVVYLICMSY 200 (209)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~ 200 (209)
+++.+++++++++++.++.|.++
T Consensus 289 l~iPl~i~llL~llLs~Imc~rR 311 (386)
T PF05510_consen 289 LAIPLIIALLLLLLLSYIMCCRR 311 (386)
T ss_pred HHHHHHHHHHHHHHHHHHheech
Confidence 34444555555555556555544
No 149
>PF06809 NPDC1: Neural proliferation differentiation control-1 protein (NPDC1); InterPro: IPR009635 This family consists of several neural proliferation differentiation control-1 (NPDC1) proteins. NPDC1 plays a role in the control of neural cell proliferation and differentiation. It has been suggested that NPDC1 may be involved in the development of several secretion glands. This family also contains the C-terminal region of the Caenorhabditis elegans protein CAB-1 (Q93249 from SWISSPROT) which is known to interact with AEX-3 [].; GO: 0016021 integral to membrane
Probab=25.23 E-value=29 Score=28.84 Aligned_cols=26 Identities=8% Similarity=-0.015 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy14513 179 PLLFIMTLLLITLVVYLICMSYKYAR 204 (209)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~r 204 (209)
++.++..++.++++.+.|++.+|..|
T Consensus 204 v~~cvaG~aAliva~~cW~Rlqr~~r 229 (341)
T PF06809_consen 204 VVCCVAGAAALIVAGYCWYRLQREIR 229 (341)
T ss_pred HHHHHHHHHHHHHhhheEEEeccccc
Confidence 33333344444444455555555444
No 150
>KOG3839|consensus
Probab=24.91 E-value=18 Score=30.17 Aligned_cols=31 Identities=13% Similarity=0.084 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCCCC
Q psy14513 179 PLLFIMTLLLITLVVYLICMSYKYARNHVPY 209 (209)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 209 (209)
++.+++.+++.+++.+.++..++.|+|+..|
T Consensus 321 ll~~vv~~v~~ai~s~~i~q~r~er~Rkrfy 351 (351)
T KOG3839|consen 321 LLFVVVFLVGGAIFSIVIFQVRQERNRKRFY 351 (351)
T ss_pred HHHHHHHHHHhhheEEEEEeehhhhhhcccC
Confidence 3333333333333333334444444444433
No 151
>PF14851 FAM176: FAM176 family
Probab=24.24 E-value=69 Score=23.74 Aligned_cols=19 Identities=26% Similarity=0.333 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy14513 179 PLLFIMTLLLITLVVYLIC 197 (209)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~ 197 (209)
.+.+++++.+.++++-..|
T Consensus 29 gVC~GLlLtLcllV~risc 47 (153)
T PF14851_consen 29 GVCAGLLLTLCLLVIRISC 47 (153)
T ss_pred HHHHHHHHHHHHHHhhhee
Confidence 3333334444444444455
No 152
>PF11884 DUF3404: Domain of unknown function (DUF3404); InterPro: IPR021821 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 260 amino acids in length. This domain is found associated with PF02518 from PFAM, PF00512 from PFAM.
Probab=23.41 E-value=2.4e+02 Score=22.92 Aligned_cols=8 Identities=13% Similarity=0.123 Sum_probs=3.7
Q ss_pred CccCCCce
Q psy14513 158 GECVKGAL 165 (209)
Q Consensus 158 ~~C~~~~~ 165 (209)
..|.....
T Consensus 211 ~sC~~r~g 218 (262)
T PF11884_consen 211 NSCFVRYG 218 (262)
T ss_pred Ccccceec
Confidence 35654433
No 153
>PHA03265 envelope glycoprotein D; Provisional
Probab=22.65 E-value=39 Score=28.53 Aligned_cols=8 Identities=25% Similarity=0.775 Sum_probs=5.1
Q ss_pred cHhHHHHH
Q psy14513 113 IQWLIDYV 120 (209)
Q Consensus 113 ~~~~~~~~ 120 (209)
..++..|+
T Consensus 251 ka~V~yW~ 258 (402)
T PHA03265 251 LTWLKFWF 258 (402)
T ss_pred HHHHHHHH
Confidence 46666677
No 154
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=22.54 E-value=2.1e+02 Score=20.05 Aligned_cols=18 Identities=33% Similarity=0.844 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy14513 180 LLFIMTLLLITLVVYLIC 197 (209)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~ 197 (209)
+..++.++++.++++++.
T Consensus 69 i~LivSLaLVsFvIFLii 86 (128)
T PF15145_consen 69 IVLIVSLALVSFVIFLII 86 (128)
T ss_pred HHHHHHHHHHHHHHHhee
Confidence 333444445555555443
No 155
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=22.05 E-value=1.6e+02 Score=19.33 Aligned_cols=18 Identities=6% Similarity=0.344 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy14513 183 IMTLLLITLVVYLICMSY 200 (209)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~ 200 (209)
++.+.++++++|..++|.
T Consensus 10 ~V~V~IVclliya~YRR~ 27 (92)
T PHA02681 10 VIVISIVCYIVIMMYRRS 27 (92)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 334444445555444443
No 156
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=21.99 E-value=30 Score=30.32 Aligned_cols=27 Identities=15% Similarity=0.312 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy14513 179 PLLFIMTLLLITLVVYLICMSYKYARN 205 (209)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~r~ 205 (209)
+++++++++++++.+...|+++|++++
T Consensus 360 gvavlivVv~viv~vc~~~rrrR~~~~ 386 (439)
T PF02480_consen 360 GVAVLIVVVGVIVWVCLRCRRRRRQRD 386 (439)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHhheeeeehhcccccc
Confidence 344455555555555666666655554
No 157
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=21.56 E-value=94 Score=26.84 Aligned_cols=10 Identities=30% Similarity=-0.057 Sum_probs=4.7
Q ss_pred eccccchhhH
Q psy14513 169 QLSTQFYKLY 178 (209)
Q Consensus 169 ~~~~~~~~~~ 178 (209)
..++..+..|
T Consensus 363 ~LstgaIaGI 372 (397)
T PF03302_consen 363 GLSTGAIAGI 372 (397)
T ss_pred cccccceeee
Confidence 4455544433
No 158
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=21.10 E-value=82 Score=22.50 Aligned_cols=15 Identities=7% Similarity=0.104 Sum_probs=7.2
Q ss_pred HHHHHHHHhhhhccC
Q psy14513 192 VVYLICMSYKYARNH 206 (209)
Q Consensus 192 ~~~~~~~~~~~~r~~ 206 (209)
+++..+.++|++||+
T Consensus 100 lcW~~~~rkK~~kr~ 114 (129)
T PF15099_consen 100 LCWKPIIRKKKKKRR 114 (129)
T ss_pred heehhhhHhHHHHhh
Confidence 444555555554443
No 159
>PF08999 SP_C-Propep: Surfactant protein C, N terminal propeptide; InterPro: IPR015091 The N-terminal propeptide of surfactant protein C adopts an alpha-helical structure, with turn and extended regions. Its main function is the stabilisation of metastable surfactant protein C (SP-C), since the latter can irreversibly transform from its native alpha-helical structure to beta-sheet aggregates and form amyloid-like fibrils. The correct intracellular trafficking of proSP-C has also been reported to depend on the propeptide []. ; PDB: 1SPF_A 2YAD_F.
Probab=21.03 E-value=1.9e+02 Score=18.90 Aligned_cols=12 Identities=17% Similarity=0.407 Sum_probs=1.5
Q ss_pred HHHHHhhhhccC
Q psy14513 195 LICMSYKYARNH 206 (209)
Q Consensus 195 ~~~~~~~~~r~~ 206 (209)
...+.-...++|
T Consensus 53 ~LLMGLhmsqkH 64 (93)
T PF08999_consen 53 ALLMGLHMSQKH 64 (93)
T ss_dssp HHHH--------
T ss_pred HHHHHhhhhhhh
Confidence 333333333333
No 160
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=20.33 E-value=1.5e+02 Score=19.62 Aligned_cols=15 Identities=27% Similarity=0.611 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHhhh
Q psy14513 188 LITLVVYLICMSYKY 202 (209)
Q Consensus 188 ~~~~~~~~~~~~~~~ 202 (209)
.+++++.+.|.+++.
T Consensus 31 ~v~l~vvL~C~r~~~ 45 (87)
T PF11980_consen 31 AVCLGVVLYCHRFHW 45 (87)
T ss_pred HHHHHHHHhhhhhcc
Confidence 333344444555444
Done!