Query psy14513
Match_columns 209
No_of_seqs 153 out of 1658
Neff 9.2
Searched_HMMs 29240
Date Fri Aug 16 21:50:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14513.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14513hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wfh_A SLIT homolog 2 protein 99.9 2.1E-22 7E-27 154.4 12.8 125 31-163 62-187 (193)
2 2v9t_B SLIT homolog 2 protein 99.9 4.4E-22 1.5E-26 155.4 12.1 127 31-165 88-215 (220)
3 1w8a_A SLIT protein; signaling 99.9 1.2E-21 4.2E-26 149.8 13.8 133 20-164 55-188 (192)
4 4g8a_A TOLL-like receptor 4; l 99.9 4.4E-22 1.5E-26 175.5 12.0 126 21-152 496-623 (635)
5 2v70_A SLIT-2, SLIT homolog 2 99.8 1.2E-20 4.2E-25 147.2 12.2 142 13-163 72-214 (220)
6 3g39_A Variable lymphocyte rec 99.8 2.8E-20 9.6E-25 139.7 12.7 136 4-152 19-160 (170)
7 3zyj_A Leucine-rich repeat-con 99.8 3.4E-20 1.2E-24 158.3 14.0 137 20-166 208-345 (440)
8 3zyi_A Leucine-rich repeat-con 99.8 1.3E-19 4.4E-24 155.2 13.5 135 20-164 219-354 (452)
9 2r9u_A Variable lymphocyte rec 99.8 3.4E-19 1.2E-23 134.3 12.8 137 3-152 21-166 (174)
10 3j0a_A TOLL-like receptor 5; m 99.8 1.6E-19 5.4E-24 165.7 9.8 135 18-163 476-610 (844)
11 2ifg_A High affinity nerve gro 99.8 3E-18 1E-22 141.8 13.8 127 6-143 21-149 (347)
12 1p9a_G Platelet glycoprotein I 99.8 1.2E-17 4.1E-22 135.4 14.0 91 31-122 132-222 (290)
13 2o6q_A Variable lymphocyte rec 99.7 3.6E-17 1.2E-21 130.9 14.6 134 20-163 134-269 (270)
14 1ozn_A Reticulon 4 receptor; N 99.7 1.3E-17 4.4E-22 134.4 9.5 117 31-152 161-278 (285)
15 2z66_A Variable lymphocyte rec 99.7 1.6E-17 5.4E-22 135.0 9.9 127 20-152 176-304 (306)
16 1ziw_A TOLL-like receptor 3; i 99.7 4.4E-19 1.5E-23 158.6 0.5 121 31-152 544-667 (680)
17 3vq2_A TLR4, TOLL-like recepto 99.7 5.1E-18 1.8E-22 149.7 6.6 127 20-152 474-601 (606)
18 3m19_A Variable lymphocyte rec 99.7 1.1E-16 3.7E-21 126.8 13.2 98 20-122 108-207 (251)
19 3e6j_A Variable lymphocyte rec 99.7 2E-16 6.7E-21 124.0 12.5 116 31-152 96-220 (229)
20 3rfe_A Platelet glycoprotein I 99.7 5.5E-17 1.9E-21 116.6 7.1 102 50-160 11-115 (130)
21 2o6r_A Variable lymphocyte rec 99.7 3.2E-16 1.1E-20 117.7 11.7 112 19-138 52-165 (177)
22 3t6q_A CD180 antigen; protein- 99.7 2E-17 6.8E-22 146.0 4.9 119 31-152 484-603 (606)
23 2id5_A Lingo-1, leucine rich r 99.7 5.8E-17 2E-21 139.3 7.3 135 20-163 249-385 (477)
24 2xot_A Amphoterin-induced prot 99.6 2.1E-16 7.2E-21 131.7 2.9 131 12-144 78-239 (361)
25 3v47_A TOLL-like receptor 5B a 99.6 1.4E-14 5E-19 123.3 11.8 112 20-139 324-437 (455)
26 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 1.2E-14 4.2E-19 127.4 11.3 99 47-151 450-555 (562)
27 2o6s_A Variable lymphocyte rec 99.6 1.3E-13 4.5E-18 105.9 14.6 100 20-124 77-178 (208)
28 2z7x_B TOLL-like receptor 1, v 99.5 6.4E-14 2.2E-18 121.5 11.3 103 31-140 407-511 (520)
29 2z62_A TOLL-like receptor 4, v 99.5 1.1E-13 3.7E-18 110.7 11.2 104 31-139 157-266 (276)
30 3rfs_A Internalin B, repeat mo 99.5 4.2E-13 1.4E-17 107.3 14.2 97 20-121 134-232 (272)
31 2z63_A TOLL-like receptor 4, v 99.5 1.5E-13 5.1E-18 120.1 10.2 112 20-139 446-560 (570)
32 2z81_A CD282 antigen, TOLL-lik 99.4 4.5E-13 1.5E-17 116.7 10.5 99 31-139 439-539 (549)
33 2z80_A TOLL-like receptor 2, v 99.4 1.8E-13 6.2E-18 113.2 5.7 69 68-139 273-343 (353)
34 4g8a_A TOLL-like receptor 4; l 99.4 6.1E-13 2.1E-17 117.1 7.9 95 5-108 42-137 (635)
35 2wfh_A SLIT homolog 2 protein 99.4 4.2E-12 1.4E-16 96.7 10.1 95 5-109 21-116 (193)
36 2v9t_B SLIT homolog 2 protein 99.4 3.2E-12 1.1E-16 99.3 9.5 96 5-109 22-118 (220)
37 1w8a_A SLIT protein; signaling 99.3 5.4E-12 1.8E-16 95.9 9.6 98 4-110 18-117 (192)
38 3e6j_A Variable lymphocyte rec 99.3 7.6E-12 2.6E-16 97.7 10.0 95 5-108 30-125 (229)
39 2v70_A SLIT-2, SLIT homolog 2 99.3 6.8E-12 2.3E-16 97.4 8.9 77 31-108 40-118 (220)
40 2o6r_A Variable lymphocyte rec 99.3 1.7E-11 5.7E-16 91.7 9.9 85 19-108 28-113 (177)
41 1p9a_G Platelet glycoprotein I 99.2 3.1E-11 1.1E-15 97.5 10.1 84 20-108 101-185 (290)
42 2xot_A Amphoterin-induced prot 99.2 2.1E-11 7.2E-16 101.4 8.9 76 31-107 47-124 (361)
43 2o6s_A Variable lymphocyte rec 99.2 6.4E-11 2.2E-15 90.7 10.2 84 20-108 29-113 (208)
44 3m19_A Variable lymphocyte rec 99.2 5.1E-11 1.8E-15 94.0 9.8 76 31-107 43-119 (251)
45 2o6q_A Variable lymphocyte rec 99.2 1.1E-10 3.7E-15 93.1 9.8 77 31-108 69-146 (270)
46 3o53_A Protein LRIM1, AGAP0063 99.2 2.8E-11 9.5E-16 98.8 5.8 84 31-118 177-260 (317)
47 3zyi_A Leucine-rich repeat-con 99.2 1.1E-10 3.8E-15 99.7 9.5 93 7-108 67-160 (452)
48 3zyj_A Leucine-rich repeat-con 99.1 1.5E-10 5.1E-15 98.5 9.4 84 20-108 65-149 (440)
49 3a79_B TLR6, VLRB.59, TOLL-lik 99.1 2.3E-10 7.8E-15 100.2 9.5 96 3-109 40-135 (562)
50 3rfs_A Internalin B, repeat mo 99.1 4.2E-10 1.4E-14 89.8 10.2 77 31-108 93-170 (272)
51 2z80_A TOLL-like receptor 2, v 99.1 1.4E-10 4.8E-15 95.8 7.4 84 20-108 53-137 (353)
52 1xku_A Decorin; proteoglycan, 99.1 3.5E-10 1.2E-14 92.5 9.5 86 19-109 192-277 (330)
53 2ft3_A Biglycan; proteoglycan, 99.1 2.3E-10 7.9E-15 93.7 8.2 86 19-109 193-278 (332)
54 1a9n_A U2A', U2A'; complex (nu 99.1 6.1E-11 2.1E-15 88.7 4.0 86 20-112 43-130 (176)
55 4ay9_X Follicle-stimulating ho 99.1 1.6E-10 5.5E-15 95.6 6.9 96 4-108 19-117 (350)
56 2z7x_B TOLL-like receptor 1, v 99.1 2.5E-10 8.5E-15 98.8 8.2 97 2-109 8-104 (520)
57 2id5_A Lingo-1, leucine rich r 99.1 3.8E-10 1.3E-14 96.7 9.3 81 22-107 35-116 (477)
58 2z62_A TOLL-like receptor 4, v 99.1 4.6E-10 1.6E-14 89.5 8.8 77 31-108 60-137 (276)
59 3oja_A Leucine-rich immune mol 99.1 1.3E-10 4.4E-15 100.4 5.7 82 31-116 177-258 (487)
60 2xwt_C Thyrotropin receptor; s 99.1 1.5E-10 5.2E-15 90.5 5.6 83 21-108 33-118 (239)
61 3g39_A Variable lymphocyte rec 99.0 4.9E-10 1.7E-14 83.4 7.7 79 23-109 13-92 (170)
62 1ozn_A Reticulon 4 receptor; N 99.0 1.2E-09 4.2E-14 87.4 10.1 76 31-107 88-165 (285)
63 2r9u_A Variable lymphocyte rec 99.0 5.8E-10 2E-14 83.4 7.7 75 31-109 20-95 (174)
64 4b8c_D Glucose-repressible alc 99.0 5.2E-10 1.8E-14 101.2 8.6 98 4-110 234-331 (727)
65 3t6q_A CD180 antigen; protein- 99.0 6.5E-10 2.2E-14 97.9 8.8 95 6-109 24-119 (606)
66 3vq2_A TLR4, TOLL-like recepto 99.0 8.6E-10 2.9E-14 97.1 9.2 76 31-107 40-116 (606)
67 2z81_A CD282 antigen, TOLL-lik 99.0 4.8E-10 1.7E-14 97.5 7.3 84 20-108 27-111 (549)
68 2xwt_C Thyrotropin receptor; s 99.0 8.2E-10 2.8E-14 86.3 6.7 91 12-105 45-140 (239)
69 2z63_A TOLL-like receptor 4, v 99.0 1.5E-09 5.2E-14 94.6 8.9 75 31-106 36-111 (570)
70 2ifg_A High affinity nerve gro 99.0 8.2E-10 2.8E-14 90.9 6.7 76 31-109 16-94 (347)
71 3o6n_A APL1; leucine-rich repe 99.0 1.5E-09 5.3E-14 90.6 8.3 76 31-107 77-153 (390)
72 2ft3_A Biglycan; proteoglycan, 99.0 2.5E-09 8.4E-14 87.5 9.3 82 19-107 54-135 (332)
73 3o6n_A APL1; leucine-rich repe 99.0 2.5E-09 8.6E-14 89.3 9.4 85 20-109 94-179 (390)
74 1dce_A Protein (RAB geranylger 98.9 1.3E-09 4.3E-14 96.0 7.8 85 20-112 464-550 (567)
75 1xku_A Decorin; proteoglycan, 98.9 3.6E-09 1.2E-13 86.4 9.8 82 20-108 53-134 (330)
76 2ell_A Acidic leucine-rich nuc 98.9 6.8E-10 2.3E-14 82.1 4.9 76 31-109 57-134 (168)
77 3v47_A TOLL-like receptor 5B a 98.9 2.4E-09 8.3E-14 90.9 8.7 84 21-109 301-385 (455)
78 2je0_A Acidic leucine-rich nuc 98.9 5.4E-10 1.8E-14 81.0 4.0 75 31-108 50-126 (149)
79 3oja_B Anopheles plasmodium-re 98.9 3.7E-09 1.3E-13 93.4 9.3 77 31-108 107-184 (597)
80 1ziw_A TOLL-like receptor 3; i 98.9 2.6E-09 9E-14 95.3 8.1 77 31-108 57-134 (680)
81 3oja_B Anopheles plasmodium-re 98.9 3.3E-09 1.1E-13 93.7 8.3 85 20-109 76-161 (597)
82 3rgz_A Protein brassinosteroid 98.9 1.5E-09 5E-14 98.7 5.2 88 21-113 634-722 (768)
83 2ell_A Acidic leucine-rich nuc 98.8 1.9E-09 6.6E-14 79.6 4.3 84 20-108 72-160 (168)
84 2z66_A Variable lymphocyte rec 98.8 5.7E-09 1.9E-13 84.3 7.4 78 31-109 134-213 (306)
85 1xeu_A Internalin C; cellular 98.8 8.6E-09 2.9E-13 82.0 8.0 82 19-110 106-187 (263)
86 1a9n_A U2A', U2A'; complex (nu 98.8 9.8E-10 3.4E-14 82.0 2.3 84 20-108 65-153 (176)
87 4eco_A Uncharacterized protein 98.8 1.9E-08 6.4E-13 89.6 9.7 75 31-109 521-601 (636)
88 2je0_A Acidic leucine-rich nuc 98.8 3E-09 1E-13 77.0 3.7 84 18-109 16-102 (149)
89 4fcg_A Uncharacterized protein 98.8 9.5E-09 3.3E-13 84.2 7.1 86 19-111 183-269 (328)
90 4ezg_A Putative uncharacterize 98.8 6.7E-09 2.3E-13 78.8 5.5 83 19-108 66-149 (197)
91 1ogq_A PGIP-2, polygalacturona 98.8 2.3E-09 7.9E-14 87.3 2.9 86 21-112 199-285 (313)
92 1wwl_A Monocyte differentiatio 98.8 5E-09 1.7E-13 85.1 4.9 88 16-110 198-289 (312)
93 3rgz_A Protein brassinosteroid 98.8 1.2E-08 4E-13 92.7 7.7 91 21-116 468-559 (768)
94 4ezg_A Putative uncharacterize 98.8 1.1E-08 3.8E-13 77.6 6.0 84 20-109 89-173 (197)
95 1h6u_A Internalin H; cell adhe 98.7 1.5E-08 5.1E-13 82.3 7.0 73 31-109 159-231 (308)
96 3j0a_A TOLL-like receptor 5; m 98.7 2.6E-08 9E-13 91.3 9.3 78 31-109 298-376 (844)
97 1wwl_A Monocyte differentiatio 98.7 1.1E-08 3.7E-13 83.1 6.0 84 20-108 174-266 (312)
98 1dce_A Protein (RAB geranylger 98.7 1.3E-08 4.4E-13 89.6 6.5 81 21-110 443-523 (567)
99 4b8c_D Glucose-repressible alc 98.7 9.5E-09 3.2E-13 92.9 5.8 76 30-108 231-306 (727)
100 3o53_A Protein LRIM1, AGAP0063 98.7 1.6E-08 5.6E-13 82.3 6.5 87 16-108 117-204 (317)
101 4glp_A Monocyte differentiatio 98.7 1.9E-08 6.4E-13 81.6 6.6 84 19-109 197-286 (310)
102 1ogq_A PGIP-2, polygalacturona 98.7 9.5E-09 3.2E-13 83.6 4.7 75 33-108 87-162 (313)
103 4glp_A Monocyte differentiatio 98.7 1.5E-08 5.1E-13 82.2 5.7 85 19-108 169-264 (310)
104 3oja_A Leucine-rich immune mol 98.7 2.1E-08 7.3E-13 86.5 6.4 83 19-107 120-203 (487)
105 1xeu_A Internalin C; cellular 98.7 6.8E-08 2.3E-12 76.7 8.6 70 31-107 71-140 (263)
106 4ecn_A Leucine-rich repeat pro 98.7 6.3E-08 2.1E-12 89.1 9.0 85 20-109 674-767 (876)
107 1h6u_A Internalin H; cell adhe 98.6 6.3E-08 2.2E-12 78.6 7.7 70 31-106 115-184 (308)
108 4ecn_A Leucine-rich repeat pro 98.6 1.1E-07 3.7E-12 87.6 10.0 75 31-107 736-818 (876)
109 1h6t_A Internalin B; cell adhe 98.6 3.5E-08 1.2E-12 79.5 5.9 72 31-108 120-191 (291)
110 3cvr_A Invasion plasmid antige 98.6 4.1E-08 1.4E-12 86.4 6.7 77 20-109 161-244 (571)
111 4fcg_A Uncharacterized protein 98.6 3.1E-08 1.1E-12 81.2 5.5 38 71-108 182-219 (328)
112 4eco_A Uncharacterized protein 98.6 5.4E-08 1.8E-12 86.6 6.9 85 20-109 434-527 (636)
113 1h6t_A Internalin B; cell adhe 98.6 1.2E-07 4.2E-12 76.3 8.2 72 31-108 142-213 (291)
114 4fmz_A Internalin; leucine ric 98.6 2.3E-08 7.8E-13 82.0 3.5 85 19-112 243-328 (347)
115 3g06_A SSPH2 (leucine-rich rep 98.5 1.4E-07 4.6E-12 84.0 7.7 78 20-110 222-299 (622)
116 4fmz_A Internalin; leucine ric 98.5 1.1E-07 3.9E-12 77.8 6.3 82 18-109 220-301 (347)
117 3cvr_A Invasion plasmid antige 98.5 3.3E-07 1.1E-11 80.7 9.2 15 73-87 161-175 (571)
118 4ay9_X Follicle-stimulating ho 98.5 1.7E-07 5.8E-12 77.3 6.9 92 10-103 42-136 (350)
119 1m9s_A Internalin B; cell inva 98.5 3.4E-07 1.1E-11 81.2 8.8 72 31-108 117-188 (605)
120 1ds9_A Outer arm dynein; leuci 98.5 1.5E-09 5E-14 82.6 -5.7 79 31-113 78-158 (198)
121 1m9s_A Internalin B; cell inva 98.5 2.6E-07 9.1E-12 81.8 7.5 81 20-110 132-212 (605)
122 3bz5_A Internalin-J, INLJ; leu 98.4 7E-07 2.4E-11 76.4 9.2 69 31-108 72-140 (457)
123 3sb4_A Hypothetical leucine ri 98.4 4.4E-07 1.5E-11 74.1 7.2 82 20-108 227-310 (329)
124 3bz5_A Internalin-J, INLJ; leu 98.4 6.6E-07 2.3E-11 76.6 7.9 79 19-109 42-120 (457)
125 1o6v_A Internalin A; bacterial 98.4 6E-07 2E-11 76.7 7.4 80 20-109 288-367 (466)
126 1o6v_A Internalin A; bacterial 98.4 3.5E-07 1.2E-11 78.2 5.7 80 19-108 68-147 (466)
127 3g06_A SSPH2 (leucine-rich rep 98.4 9.9E-07 3.4E-11 78.4 8.7 88 4-108 50-154 (622)
128 1jl5_A Outer protein YOPM; leu 98.3 2.1E-06 7.2E-11 73.4 9.1 77 20-108 132-208 (454)
129 1ds9_A Outer arm dynein; leuci 98.3 3.1E-08 1.1E-12 75.1 -3.0 64 42-108 43-106 (198)
130 1jl5_A Outer protein YOPM; leu 98.3 3.2E-06 1.1E-10 72.3 9.2 76 20-107 174-249 (454)
131 3goz_A Leucine-rich repeat-con 98.2 2.4E-07 8.1E-12 76.7 1.7 84 21-109 24-123 (362)
132 3sb4_A Hypothetical leucine ri 98.2 2.2E-06 7.5E-11 69.9 6.5 89 9-101 237-327 (329)
133 3rw6_A Nuclear RNA export fact 98.1 2.3E-07 8E-12 74.0 -0.5 78 31-111 151-236 (267)
134 2ca6_A RAN GTPase-activating p 98.1 3.7E-07 1.3E-11 76.0 -0.3 96 20-120 217-329 (386)
135 2ast_B S-phase kinase-associat 98.0 1.2E-06 4.1E-11 71.2 0.8 82 19-105 93-178 (336)
136 3goz_A Leucine-rich repeat-con 97.8 3.4E-06 1.2E-10 69.7 0.9 78 31-109 6-94 (362)
137 3rw6_A Nuclear RNA export fact 97.8 4E-06 1.4E-10 66.8 1.1 77 19-101 170-257 (267)
138 2ca6_A RAN GTPase-activating p 97.8 6.2E-06 2.1E-10 68.5 1.6 65 42-107 182-256 (386)
139 1z7x_W Ribonuclease inhibitor; 97.7 3.4E-06 1.2E-10 71.4 -1.4 36 73-108 371-411 (461)
140 4fdw_A Leucine rich hypothetic 97.7 0.0001 3.6E-09 61.9 7.6 71 33-105 257-333 (401)
141 2ast_B S-phase kinase-associat 97.6 1.6E-05 5.4E-10 64.5 1.5 81 20-106 71-153 (336)
142 3un9_A NLR family member X1; l 97.6 7.1E-06 2.4E-10 68.4 -0.7 84 20-108 127-224 (372)
143 4fdw_A Leucine rich hypothetic 97.6 0.00017 5.8E-09 60.6 7.6 93 10-107 259-357 (401)
144 3rfe_A Platelet glycoprotein I 97.5 8.7E-05 3E-09 52.5 4.5 50 31-84 16-67 (130)
145 1z7x_W Ribonuclease inhibitor; 97.5 1.2E-05 4.2E-10 68.0 -0.2 44 42-86 222-270 (461)
146 3un9_A NLR family member X1; l 97.2 4.9E-05 1.7E-09 63.3 -0.1 84 20-108 102-196 (372)
147 4fs7_A Uncharacterized protein 97.1 0.00083 2.8E-08 55.9 6.8 70 33-105 306-376 (394)
148 4gt6_A Cell surface protein; l 97.1 0.0011 3.8E-08 55.1 6.9 70 33-105 297-367 (394)
149 4h09_A Hypothetical leucine ri 97.0 0.00092 3.1E-08 55.1 5.9 70 34-105 250-320 (379)
150 3e4g_A ATP synthase subunit S, 96.8 0.00036 1.2E-08 51.9 1.5 94 9-107 49-151 (176)
151 1io0_A Tropomodulin; LRR prote 96.5 0.00024 8.1E-09 53.1 -1.5 86 20-110 37-138 (185)
152 1io0_A Tropomodulin; LRR prote 96.4 0.00037 1.3E-08 52.0 -0.8 70 40-109 29-107 (185)
153 2p1m_B Transport inhibitor res 96.3 0.0004 1.4E-08 60.5 -1.4 73 34-107 442-518 (594)
154 4h09_A Hypothetical leucine ri 96.2 0.012 4.3E-07 48.3 7.3 68 33-102 272-340 (379)
155 4fs7_A Uncharacterized protein 95.7 0.0074 2.5E-07 50.1 3.9 64 34-100 58-122 (394)
156 3ogk_B Coronatine-insensitive 95.7 0.0011 3.8E-08 57.6 -1.4 62 45-107 162-232 (592)
157 4gt6_A Cell surface protein; l 95.7 0.035 1.2E-06 45.9 7.8 69 33-104 274-343 (394)
158 2p1m_B Transport inhibitor res 95.3 0.0037 1.3E-07 54.3 0.5 83 20-106 106-195 (594)
159 3ogk_B Coronatine-insensitive 95.0 0.018 6.3E-07 49.9 4.2 39 20-63 193-235 (592)
160 2lz0_A Uncharacterized protein 93.3 0.22 7.7E-06 33.0 5.9 54 31-86 4-57 (100)
161 2ra8_A Uncharacterized protein 92.7 0.012 4E-07 48.7 -1.5 37 71-107 251-291 (362)
162 2ra8_A Uncharacterized protein 90.8 0.071 2.4E-06 44.0 1.2 63 45-108 250-320 (362)
163 1pgv_A TMD-1, tropomodulin TMD 90.5 0.093 3.2E-06 39.5 1.6 64 41-105 64-136 (197)
164 3e4g_A ATP synthase subunit S, 88.9 0.097 3.3E-06 38.7 0.5 59 47-106 61-125 (176)
165 2lz0_A Uncharacterized protein 78.3 4.1 0.00014 26.7 4.9 51 59-110 7-59 (100)
166 2klu_A T-cell surface glycopro 74.4 5.7 0.00019 24.0 4.2 10 197-206 31-40 (70)
167 2k1k_A Ephrin type-A receptor 69.4 3.6 0.00012 22.0 2.3 16 179-194 17-32 (38)
168 2l8s_A Integrin alpha-1; trans 68.2 11 0.00039 21.8 4.4 13 193-205 29-41 (54)
169 1pgv_A TMD-1, tropomodulin TMD 67.9 2.2 7.4E-05 32.0 1.7 82 20-106 71-168 (197)
170 2k9j_B Integrin beta-3; transm 67.6 12 0.00041 20.5 4.3 21 183-203 20-40 (43)
171 2ks1_B Epidermal growth factor 66.9 9.6 0.00033 21.1 3.8 12 179-190 17-28 (44)
172 2knc_A Integrin alpha-IIB; tra 66.7 14 0.00048 21.4 4.6 14 192-205 31-44 (54)
173 2l34_A TYRO protein tyrosine k 47.2 16 0.00056 18.7 2.4 20 177-196 11-30 (33)
174 2l9u_A Receptor tyrosine-prote 36.8 46 0.0016 17.2 4.4 18 185-202 17-34 (40)
175 2k1a_A Integrin alpha-IIB; sin 36.7 52 0.0018 17.8 3.9 7 175-181 10-16 (42)
176 1afo_A Glycophorin A; integral 33.9 56 0.0019 17.4 3.8 20 179-198 16-35 (40)
177 2l8s_A Integrin alpha-1; trans 33.3 71 0.0024 18.4 4.8 31 177-207 10-40 (54)
178 2k21_A Potassium voltage-gated 31.5 72 0.0025 21.9 4.3 27 179-205 58-84 (138)
179 3j1r_A Archaeal adhesion filam 20.8 84 0.0029 15.0 3.6 12 185-196 13-24 (26)
No 1
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.88 E-value=2.1e-22 Score=154.39 Aligned_cols=125 Identities=29% Similarity=0.537 Sum_probs=111.0
Q ss_pred ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCCCCcc
Q psy14513 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSNPWTC 109 (209)
Q Consensus 31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np~~C 109 (209)
++|.|+.+++++|.++++|++|+|++| .++.+++.+|.++++|++|+|++|+++.++... ..+++|+.+++++|||.|
T Consensus 62 s~N~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 62 SNNRISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCcCCEeCHhHccCCCCCCEEECCCC-ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 899999999999999999999999999 999999999999999999999999999999876 889999999999999999
Q ss_pred ccCcHhHHHHHHhcCCCCCCCCCccccCCCCCCCCcccccCCCCCcccCccCCC
Q psy14513 110 DCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNPLLSHISGECVKG 163 (209)
Q Consensus 110 ~C~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~l~g~~l~~~~~~~~~~~~C~~~ 163 (209)
||++.|+..|+.... .......|+.|+.++|+.+.+++. ....|...
T Consensus 141 ~c~l~~l~~~~~~~~----~~~~~~~C~~P~~l~g~~l~~~~~---~~~~~~~~ 187 (193)
T 2wfh_A 141 DCNMQWLSDWVKSEY----KEPGIARCAGPGEMADKLLLTTPS---KKFTCAAA 187 (193)
T ss_dssp SGGGHHHHHHHHHSS----CCCSCCBEEESGGGTTCBTTTSCG---GGCCC---
T ss_pred CCcCHHHHHHHHhcc----CCCCCcCcCCchHHCCCCcccCCh---HHeeehhh
Confidence 999999999995432 223568999999999999999997 66666543
No 2
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.87 E-value=4.4e-22 Score=155.42 Aligned_cols=127 Identities=20% Similarity=0.439 Sum_probs=106.9
Q ss_pred ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCCCCcc
Q psy14513 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSNPWTC 109 (209)
Q Consensus 31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np~~C 109 (209)
++|.|+.+++..|.++++|++|+|++| .++.+++..|.++++|+.|+|++|+++.++... ..+++|+.+++++|||.|
T Consensus 88 s~N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 88 YGNKITELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCcCCccCHhHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 788888888888888888888888888 888888888888889999999999999988776 889999999999999999
Q ss_pred ccCcHhHHHHHHhcCCCCCCCCCccccCCCCCCCCcccccCCCCCcccCccCCCce
Q psy14513 110 DCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNPLLSHISGECVKGAL 165 (209)
Q Consensus 110 ~C~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~l~g~~l~~~~~~~~~~~~C~~~~~ 165 (209)
||++.|+..|+..... ......|..|..++|+.+.++.. .++.|..+..
T Consensus 167 ~c~l~~l~~~l~~~~~----~~~~~~C~~P~~l~g~~l~~l~~---~~~~c~~~~~ 215 (220)
T 2v9t_B 167 DCHLKWLADYLHTNPI----ETSGARCTSPRRLANKRIGQIKS---KKFRCSAAAH 215 (220)
T ss_dssp SGGGHHHHHHHHHCCC----BCSCCBEEESGGGTTCBGGGSCG---GGCCC-----
T ss_pred CCccHHHHHHHHhCCC----CccCCCcCCchHHcCCchhhCCH---HHCcCccccc
Confidence 9999999999854332 23568999999999999999998 8888976543
No 3
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.87 E-value=1.2e-21 Score=149.79 Aligned_cols=133 Identities=24% Similarity=0.438 Sum_probs=115.4
Q ss_pred ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCcc
Q psy14513 20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLE 98 (209)
Q Consensus 20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~ 98 (209)
++..|.+ ++|.|+.+.+.+|.++++|++|+|++| .++.+++..|.++++|++|+|++|+++++++.. ..+++|+
T Consensus 55 ~L~~L~L----s~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 129 (192)
T 1w8a_A 55 HLVKLEL----KRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129 (192)
T ss_dssp TCCEEEC----CSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCC
T ss_pred CCCEEEC----CCCCCCCcCHhHcCCcccCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCC
Confidence 3445555 899999999999999999999999999 999999999999999999999999999975555 8899999
Q ss_pred EEEeeCCCCccccCcHhHHHHHHhcCCCCCCCCCccccCCCCCCCCcccccCCCCCcccCccCCCc
Q psy14513 99 VLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNPLLSHISGECVKGA 164 (209)
Q Consensus 99 ~l~l~~Np~~C~C~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~l~g~~l~~~~~~~~~~~~C~~~~ 164 (209)
++++++|||.|+|++.|+..|+..... ......|..|..++|.++.++.. +++.|..+.
T Consensus 130 ~L~L~~N~l~c~c~l~~~~~~l~~~~~----~~~~~~C~~P~~l~~~~l~~l~~---~~~~C~~~~ 188 (192)
T 1w8a_A 130 SLNLASNPFNCNCHLAWFAEWLRKKSL----NGGAARCGAPSKVRDVQIKDLPH---SEFKCSSEN 188 (192)
T ss_dssp EEECTTCCBCCSGGGHHHHHHHHHHCC----SGGGCBBCSSTTTTTSBGGGSCT---TTCCCCCC-
T ss_pred EEEeCCCCccCcCcchHHHHHHHHcCC----CCCCCCCCCChHHcCCChhhCcH---hhcCcCCCC
Confidence 999999999999999999999954432 23467899999999999999998 888897654
No 4
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.87 E-value=4.4e-22 Score=175.55 Aligned_cols=126 Identities=18% Similarity=0.337 Sum_probs=111.9
Q ss_pred cceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCC-CCcc
Q psy14513 21 IMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDW-DSLE 98 (209)
Q Consensus 21 l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l-~~L~ 98 (209)
+..|++ ++|+|+.+++.+|.++++|++|+|++| +++.+++.+|.++++|++|+|++|++++++++. ..+ ++|+
T Consensus 496 L~~L~L----s~N~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~ 570 (635)
T 4g8a_A 496 LTFLDL----SQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 570 (635)
T ss_dssp CCEEEC----TTSCCCEECTTTTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCC
T ss_pred cCEEEC----CCCccCCcChHHHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCC
Confidence 344555 899999999999999999999999999 999999999999999999999999999987766 666 6899
Q ss_pred EEEeeCCCCccccCcHhHHHHHHhcCCCCCCCCCccccCCCCCCCCcccccCCC
Q psy14513 99 VLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNPL 152 (209)
Q Consensus 99 ~l~l~~Np~~C~C~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~l~g~~l~~~~~ 152 (209)
.|++++|||.|||++.||.+|++..... ..+...+.|++|+.++|+++.+++.
T Consensus 571 ~L~L~~Np~~C~C~~~~~~~wl~~~~~~-~~~~~~~~C~~P~~~~g~~l~~~~~ 623 (635)
T 4g8a_A 571 FLNLTQNDFACTCEHQSFLQWIKDQRQL-LVEVERMECATPSDKQGMPVLSLNI 623 (635)
T ss_dssp EEECTTCCBCCSGGGHHHHHHHHHTTTT-BSCGGGCBBCSSTTTTTCBGGGCCC
T ss_pred EEEeeCCCCcccCCcHHHHHHHHhCCCc-cCCCCCceeCCchHHCCCEeeeecc
Confidence 9999999999999999999999554433 3455789999999999999999864
No 5
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.84 E-value=1.2e-20 Score=147.23 Aligned_cols=142 Identities=22% Similarity=0.359 Sum_probs=114.5
Q ss_pred ccCCcccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-
Q psy14513 13 ISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL- 91 (209)
Q Consensus 13 ~~~~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~- 91 (209)
++...+..+..|..+ ++++|.|+.+++..|.++++|++|+|++| .++.+.+..|.++++|+.|+|++|+++++++..
T Consensus 72 i~~~~~~~l~~L~~L-~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 149 (220)
T 2v70_A 72 IEEGAFEGASGVNEI-LLTSNRLENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF 149 (220)
T ss_dssp ECTTTTTTCTTCCEE-ECCSSCCCCCCGGGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT
T ss_pred ECHHHhCCCCCCCEE-ECCCCccCccCHhHhcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCCcCCEECHHHh
Confidence 333344443333332 33789999999989999999999999999 999999999999999999999999999986555
Q ss_pred CCCCCccEEEeeCCCCccccCcHhHHHHHHhcCCCCCCCCCccccCCCCCCCCcccccCCCCCcccCccCCC
Q psy14513 92 GDWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNPLLSHISGECVKG 163 (209)
Q Consensus 92 ~~l~~L~~l~l~~Np~~C~C~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~l~g~~l~~~~~~~~~~~~C~~~ 163 (209)
..+++|+.+++++|||.|+|++.|+..|+...... .....|..|..++|.++.++.. .+..|..+
T Consensus 150 ~~l~~L~~L~L~~N~l~c~c~l~~l~~~~~~~~~~----~~~~~C~~P~~l~g~~l~~l~~---~~~~~~~~ 214 (220)
T 2v70_A 150 DTLHSLSTLNLLANPFNCNCYLAWLGEWLRKKRIV----TGNPRCQKPYFLKEIPIQDVAI---QDFTCDDA 214 (220)
T ss_dssp TTCTTCCEEECCSCCEECSGGGHHHHHHHHHSCCB----CCCCEEEESGGGTTEEGGGSCG---GGCCCCC-
T ss_pred cCCCCCCEEEecCcCCcCCCchHHHHHHHHhcCcc----ccCCccCCChHHCCCChhhCCH---HHcccccc
Confidence 88999999999999999999999999999543322 3456999999999999999987 66667544
No 6
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.84 E-value=2.8e-20 Score=139.66 Aligned_cols=136 Identities=22% Similarity=0.337 Sum_probs=112.8
Q ss_pred CCCCCCcccccCCcccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCc
Q psy14513 4 KQNSGSRQDISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNA 83 (209)
Q Consensus 4 ~~~~~~~~~~~~~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~ 83 (209)
++....|..++ .++..|.+ ++|.|+.+++..|.++++|++|+|++| .++.++++.|.++++|++|+|++|+
T Consensus 19 n~l~~ip~~~~----~~l~~L~L----~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 19 KSLASVPTGIP----TTTQVLYL----YDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp SCCSSCCSCCC----TTCSEEEC----CSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcCccCccCC----CCCcEEEc----CCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCCc
Confidence 34445555554 45566887 999999999999999999999999999 9999999999999999999999999
Q ss_pred CcccCCCC-CCCCCccEEEeeCCCCccccC-cHhHHHHHHhcCCCCC----CCCCccccCCCCCCCCcccccCCC
Q psy14513 84 ITSLPHEL-GDWDSLEVLDIQSNPWTCDCS-IQWLIDYVAKRQRTDP----ELNYNLHCSQPVKFSNVHLLSNPL 152 (209)
Q Consensus 84 l~~l~~~~-~~l~~L~~l~l~~Np~~C~C~-~~~~~~~~~~~~~~~~----~~~~~~~C~~p~~l~g~~l~~~~~ 152 (209)
++++++.. ..+++|+.|++++|||.|+|+ +.|+..|+........ .+...+.|..+ |.++..+..
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~~~~~~~~~~~~~~~~~~C~~~----~~~~~~~~~ 160 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQHPGLVFGYLNLDPDSARCSGT----NTPVRAVTE 160 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBCTTBGGGHHHHHHHHHCGGGEECSSSBCGGGSBBCC-----CCBGGGCCS
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCCCCCCchhHHHHHHHHHhCcceeeccccCCcccceeCCC----Cccchhccc
Confidence 99999876 899999999999999999996 9999999944333321 34567889874 677777764
No 7
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.83 E-value=3.4e-20 Score=158.32 Aligned_cols=137 Identities=26% Similarity=0.490 Sum_probs=116.1
Q ss_pred ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCcc
Q psy14513 20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLE 98 (209)
Q Consensus 20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~ 98 (209)
+|..|.+ ++|.|+.+++..|.++++|+.|++++| .++.+++.+|.++++|+.|+|++|+++.++... ..+++|+
T Consensus 208 ~L~~L~L----s~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 282 (440)
T 3zyj_A 208 KLDELDL----SGNHLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE 282 (440)
T ss_dssp SCCEEEC----TTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCC
T ss_pred ccCEEEC----CCCccCccChhhhccCccCCEEECCCC-ceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCC
Confidence 3445555 899999999999999999999999999 999999999999999999999999999999887 8899999
Q ss_pred EEEeeCCCCccccCcHhHHHHHHhcCCCCCCCCCccccCCCCCCCCcccccCCCCCcccCccCCCcee
Q psy14513 99 VLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNPLLSHISGECVKGALV 166 (209)
Q Consensus 99 ~l~l~~Np~~C~C~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~l~g~~l~~~~~~~~~~~~C~~~~~~ 166 (209)
.+++++|||.|||++.|+..|+++.... .......|.+|+.++|+.+..++. ....|..+...
T Consensus 283 ~L~L~~Np~~CdC~l~~l~~~~~~~~~~--~~~~~~~C~~P~~l~g~~l~~l~~---~~~~C~~P~i~ 345 (440)
T 3zyj_A 283 RIHLHHNPWNCNCDILWLSWWIKDMAPS--NTACCARCNTPPNLKGRYIGELDQ---NYFTCYAPVIV 345 (440)
T ss_dssp EEECCSSCEECSSTTHHHHHHHHTTSCS--SCSCCCBEEESTTTTTCBCC-------CCSCCCCCCEE
T ss_pred EEEcCCCCccCCCCchHHHHHHHhcccc--CCccccCCCChhHhcCccHhHhhh---hhccCCCCccc
Confidence 9999999999999999999999543322 334568999999999999999887 77889766543
No 8
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.82 E-value=1.3e-19 Score=155.23 Aligned_cols=135 Identities=25% Similarity=0.475 Sum_probs=117.8
Q ss_pred ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCcc
Q psy14513 20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLE 98 (209)
Q Consensus 20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~ 98 (209)
+|..|.+ ++|.+..+++..|.++++|+.|++++| .++.+.+.+|.++++|+.|+|++|+++.++... ..+++|+
T Consensus 219 ~L~~L~L----s~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 293 (452)
T 3zyi_A 219 GLEELEM----SGNHFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV 293 (452)
T ss_dssp TCCEEEC----TTSCCSEECGGGGTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCC
T ss_pred cccEEEC----cCCcCcccCcccccCccCCCEEEeCCC-cCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCC
Confidence 3445555 899999999999999999999999999 999999999999999999999999999999887 8899999
Q ss_pred EEEeeCCCCccccCcHhHHHHHHhcCCCCCCCCCccccCCCCCCCCcccccCCCCCcccCccCCCc
Q psy14513 99 VLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNPLLSHISGECVKGA 164 (209)
Q Consensus 99 ~l~l~~Np~~C~C~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~l~g~~l~~~~~~~~~~~~C~~~~ 164 (209)
.+++++|||.|||++.|+..|++..... .......|..|..++|+.+..++. ....|..|.
T Consensus 294 ~L~L~~Np~~CdC~~~~l~~~l~~~~~~--~~~~~~~C~~P~~l~g~~l~~~~~---~~~~C~~P~ 354 (452)
T 3zyi_A 294 ELHLHHNPWNCDCDILWLAWWLREYIPT--NSTCCGRCHAPMHMRGRYLVEVDQ---ASFQCSAPF 354 (452)
T ss_dssp EEECCSSCEECSTTTHHHHHHHHHHC-----CCSSCBEEESTTTTTCBTTSCCG---GGCCCCCCC
T ss_pred EEEccCCCcCCCCCchHHHHHHHHhCcc--CCccCcEeCCchHhccchhhccch---hhhcccCcc
Confidence 9999999999999999999999544322 233567999999999999999887 778897653
No 9
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.81 E-value=3.4e-19 Score=134.30 Aligned_cols=137 Identities=26% Similarity=0.420 Sum_probs=111.0
Q ss_pred CCCCCCCcccccCCcccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCC
Q psy14513 3 SKQNSGSRQDISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNN 82 (209)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N 82 (209)
.++....|..++ .++..|.+ ++|.|+.+++..|.++++|++|+|++| .++.+++..|..+++|+.|+|++|
T Consensus 21 ~n~l~~iP~~~~----~~L~~L~L----s~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 21 NIRLASVPAGIP----TDKQRLWL----NNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSCCSSCCSCCC----TTCSEEEC----CSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCCccCCCcC----CCCcEEEe----CCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC
Confidence 344455555554 45566888 999999999999999999999999999 999999999999999999999999
Q ss_pred cCcccCCCC-CCCCCccEEEeeCCCCccccC-cHhHHHHHHhcCCCC-------CCCCCccccCCCCCCCCcccccCCC
Q psy14513 83 AITSLPHEL-GDWDSLEVLDIQSNPWTCDCS-IQWLIDYVAKRQRTD-------PELNYNLHCSQPVKFSNVHLLSNPL 152 (209)
Q Consensus 83 ~l~~l~~~~-~~l~~L~~l~l~~Np~~C~C~-~~~~~~~~~~~~~~~-------~~~~~~~~C~~p~~l~g~~l~~~~~ 152 (209)
+++.++... ..+++|+.+++++|||.|+|. +.|+..|+....... ..+...+.|.. .|.++..+..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~C~~----~~~~~~~~~~ 166 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNWVADHTSIVMRWDGKAVNDPDSAKCAG----TNTPVRAVTE 166 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGHHHHHHHHHCGGGEEEESSSEEECGGGSBBTT----TCCBGGGCCG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccccHHHHHHHHHhcccccccccccccCCcccCEECC----CCccceeccc
Confidence 999999885 889999999999999999996 899999994332221 11445677876 3566666653
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.79 E-value=1.6e-19 Score=165.67 Aligned_cols=135 Identities=24% Similarity=0.357 Sum_probs=103.7
Q ss_pred ccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCc
Q psy14513 18 QYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSL 97 (209)
Q Consensus 18 ~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L 97 (209)
+..+..|..| ++++|.++.+++..|.++++|+.|+|++| .++.+++..|. ++|+.|++++|+++++++.. +.+|
T Consensus 476 ~~~l~~L~~L-~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L 549 (844)
T 3j0a_A 476 FEGLSHLQVL-YLNHNYLNSLPPGVFSHLTALRGLSLNSN-RLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSL 549 (844)
T ss_dssp SSCBCCEECC-CCCHHHHTTCCTTSSSSCCSCSEEEEESC-CCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSC
T ss_pred hcCcccccEE-ECCCCcccccChhHccchhhhheeECCCC-CCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCc
Confidence 3333333332 33788888888888888888888888888 88888887776 67888888888888866544 4588
Q ss_pred cEEEeeCCCCccccCcHhHHHHHHhcCCCCCCCCCccccCCCCCCCCcccccCCCCCcccCccCCC
Q psy14513 98 EVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNPLLSHISGECVKG 163 (209)
Q Consensus 98 ~~l~l~~Np~~C~C~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~l~g~~l~~~~~~~~~~~~C~~~ 163 (209)
+.+++++|||.|+|++.||..|+.............+.|.+|+.++|.++..+.. ..|...
T Consensus 550 ~~l~l~~Np~~C~c~~~~f~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~-----~~C~~~ 610 (844)
T 3j0a_A 550 SVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLST-----EGCDEE 610 (844)
T ss_dssp CEEEEEEECCCCSSSCCSHHHHHHHTTTTTCCCGGGCCCSSCSSSCSCCTTTCCC-----CCC---
T ss_pred CEEEecCCCcccccccHHHHHHHHhcCcccccccccCccCCchhhCCCccccCcc-----ccCCch
Confidence 9999999999999999999999965555545666788999999999999988864 468644
No 11
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.78 E-value=3e-18 Score=141.76 Aligned_cols=127 Identities=19% Similarity=0.338 Sum_probs=104.8
Q ss_pred CCCCcccccCCcccccceecccccccc-ccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcC
Q psy14513 6 NSGSRQDISYDTQYTIMKVQLPYSTAN-SELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAI 84 (209)
Q Consensus 6 ~~~~~~~~~~~~~~~l~~L~ll~~~s~-n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l 84 (209)
....|. ++..+ +|..|.+ ++ |.|+.++++.|.+|++|+.|+|++| .|+.+++.+|.++++|+.|+|++|+|
T Consensus 21 l~~ip~-l~~~~--~L~~L~l----~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 21 LDSLHH-LPGAE--NLTELYI----ENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp CTTTTT-SCSCS--CCSEEEC----CSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred CCccCC-CCCCC--CeeEEEc----cCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCCcc
Confidence 444444 44433 3556666 85 9999999999999999999999999 99999999999999999999999999
Q ss_pred cccCCCC-CCCCCccEEEeeCCCCccccCcHhHHHHHHhcCCCCCCCCCccccCCCCCCC
Q psy14513 85 TSLPHEL-GDWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFS 143 (209)
Q Consensus 85 ~~l~~~~-~~l~~L~~l~l~~Np~~C~C~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~l~ 143 (209)
+++|+.. ..++ |+.|++.+|+|.|+|++.|+..|+...... .+...+.|..|..++
T Consensus 93 ~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~--l~~~~~~C~~~~~l~ 149 (347)
T 2ifg_A 93 ESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEEEGLGG--VPEQKLQCHGQGPLA 149 (347)
T ss_dssp SCCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHHHHHTTCSS--CGGGCCCCSSSSCSS
T ss_pred ceeCHHHcccCC-ceEEEeeCCCccCCCccHHHHHHHHhCccc--ccccCCCCCCChHHh
Confidence 9999887 5555 999999999999999999999998443322 234678998877433
No 12
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.76 E-value=1.2e-17 Score=135.42 Aligned_cols=91 Identities=20% Similarity=0.349 Sum_probs=76.7
Q ss_pred ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccEEEeeCCCCccc
Q psy14513 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWTCD 110 (209)
Q Consensus 31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~l~~Np~~C~ 110 (209)
++|.|+.++++.|..+++|+.|++++| .++.++++.|..+++|+.|++++|+++.+|..+.....|+.+++++|||.|+
T Consensus 132 ~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 132 KGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred CCCCCCccChhhcccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCc
Confidence 677888888777777888888888888 8888888777778888888888888888887776667899999999999999
Q ss_pred cCcHhHHHHHHh
Q psy14513 111 CSIQWLIDYVAK 122 (209)
Q Consensus 111 C~~~~~~~~~~~ 122 (209)
|++.|+..|+.+
T Consensus 211 c~~~~l~~wl~~ 222 (290)
T 1p9a_G 211 CEILYFRRWLQD 222 (290)
T ss_dssp GGGHHHHHHHHH
T ss_pred CccHHHHHHHHh
Confidence 999999999943
No 13
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.74 E-value=3.6e-17 Score=130.93 Aligned_cols=134 Identities=22% Similarity=0.433 Sum_probs=105.3
Q ss_pred ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCcc
Q psy14513 20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLE 98 (209)
Q Consensus 20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~ 98 (209)
+|..|.+ ++|.++.+++..|.++++|++|++++| .++.+++..|..+++|+.|++++|+++.++... ..+++|+
T Consensus 134 ~L~~L~L----s~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 208 (270)
T 2o6q_A 134 KLTYLSL----GYNELQSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLK 208 (270)
T ss_dssp TCCEEEC----CSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred CCCEEEC----CCCcCCccCHhHccCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCC
Confidence 3444555 788899888888899999999999999 999999988988999999999999999998876 8899999
Q ss_pred EEEeeCCCCccccC-cHhHHHHHHhcCCCCCCCCCccccCCCCCCCCcccccCCCCCcccCccCCC
Q psy14513 99 VLDIQSNPWTCDCS-IQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNPLLSHISGECVKG 163 (209)
Q Consensus 99 ~l~l~~Np~~C~C~-~~~~~~~~~~~~~~~~~~~~~~~C~~p~~l~g~~l~~~~~~~~~~~~C~~~ 163 (209)
.+++++|||.|+|+ ..|+..|+...............|.. .|+.+.++.. ......|..|
T Consensus 209 ~L~l~~N~~~c~c~~~~~~~~~l~~~~~~~~~~~~~~~C~~----~~~~~~~~~~-~~~~~~C~~p 269 (270)
T 2o6q_A 209 MLQLQENPWDCTCNGIIYMAKWLKKKADEGLGGVDTAGCEK----GGKAVLEITE-KDAASDCVSP 269 (270)
T ss_dssp EEECCSSCBCCSSSSSHHHHHHHHHHHHTTCSSTTCCBBSS----SCSBGGGCCT-TTTCSCCCSC
T ss_pred EEEecCCCeeCCCccHHHHHHHHHhhccccccCccccccCC----CCeEeEEecc-hhhcccCCCC
Confidence 99999999999998 78999998433322233446678865 5777777775 1112467544
No 14
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.72 E-value=1.3e-17 Score=134.36 Aligned_cols=117 Identities=24% Similarity=0.497 Sum_probs=99.7
Q ss_pred ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCCCCcc
Q psy14513 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSNPWTC 109 (209)
Q Consensus 31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np~~C 109 (209)
++|.++.+++..|.++++|++|++++| .+..+.+..|..+++|+.|++++|+++.++... ..+++|+.+++++|||.|
T Consensus 161 ~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 161 HGNRISSVPERAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred CCCcccccCHHHhcCccccCEEECCCC-cccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 778888888888888888888888888 888888888888888899999999888887665 888999999999999999
Q ss_pred ccCcHhHHHHHHhcCCCCCCCCCccccCCCCCCCCcccccCCC
Q psy14513 110 DCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNPL 152 (209)
Q Consensus 110 ~C~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~l~g~~l~~~~~ 152 (209)
+|+..|+..|++.... ....+.|..|+.++|..+..+..
T Consensus 240 ~~~~~~~~~~l~~~~~----~~~~~~c~~p~~l~g~~l~~l~~ 278 (285)
T 1ozn_A 240 DCRARPLWAWLQKFRG----SSSEVPCSLPQRLAGRDLKRLAA 278 (285)
T ss_dssp SGGGHHHHHHHHHCCS----EECCCBEEESGGGTTCBGGGSCG
T ss_pred CCCcHHHHHHHHhccc----ccCccccCCchHhCCcChhhcCH
Confidence 9999999999955432 34568999999999999999886
No 15
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.72 E-value=1.6e-17 Score=135.05 Aligned_cols=127 Identities=18% Similarity=0.335 Sum_probs=108.1
Q ss_pred ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCC-CCc
Q psy14513 20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDW-DSL 97 (209)
Q Consensus 20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l-~~L 97 (209)
++..|.+ ++|.++.+++..|.++++|++|++++| .++.+++..|..+++|+.|++++|+++..++.. ..+ ++|
T Consensus 176 ~L~~L~L----s~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L 250 (306)
T 2z66_A 176 NLTFLDL----SQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL 250 (306)
T ss_dssp TCCEEEC----TTSCCCEECTTTTTTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTC
T ss_pred CCCEEEC----CCCCcCCcCHHHhcCCCCCCEEECCCC-ccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccC
Confidence 3444555 889999999999999999999999999 999999988988999999999999999865554 667 499
Q ss_pred cEEEeeCCCCccccCcHhHHHHHHhcCCCCCCCCCccccCCCCCCCCcccccCCC
Q psy14513 98 EVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNPL 152 (209)
Q Consensus 98 ~~l~l~~Np~~C~C~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~l~g~~l~~~~~ 152 (209)
+.+++++|+|.|+|+..|+..|+++.... ......+.|..|+.++|.++.+++.
T Consensus 251 ~~L~L~~N~~~~~c~~~~~~~~l~~~~~~-~~~~~~~~C~~p~~~~g~~~~~~~~ 304 (306)
T 2z66_A 251 AFLNLTQNDFACTCEHQSFLQWIKDQRQL-LVEVERMECATPSDKQGMPVLSLNI 304 (306)
T ss_dssp CEEECTTCCEECSGGGHHHHHHHHHTGGG-BSCGGGCBEEESGGGTTCBGGGCCC
T ss_pred CEEEccCCCeecccChHHHHHHHHhhhhh-hccccccccCCchhhCCceeeeecC
Confidence 99999999999999999999999543332 3345789999999999999988864
No 16
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.72 E-value=4.4e-19 Score=158.62 Aligned_cols=121 Identities=26% Similarity=0.529 Sum_probs=78.8
Q ss_pred ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-C-CCCCccEEEeeCCCCc
Q psy14513 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-G-DWDSLEVLDIQSNPWT 108 (209)
Q Consensus 31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~-~l~~L~~l~l~~Np~~ 108 (209)
++|.++.++++.|.++++|+.|++++| .++.+++..|.++++|+.|++++|+++++++.. . .+++|+.+++++|||.
T Consensus 544 ~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~ 622 (680)
T 1ziw_A 544 ESNGFDEIPVEVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCC
T ss_pred CCCCCCCCCHHHcccccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcc
Confidence 778888888888888888888888888 888888888888888888888888888877665 4 6789999999999999
Q ss_pred cccCc-HhHHHHHHhcCCCCCCCCCccccCCCCCCCCcccccCCC
Q psy14513 109 CDCSI-QWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNPL 152 (209)
Q Consensus 109 C~C~~-~~~~~~~~~~~~~~~~~~~~~~C~~p~~l~g~~l~~~~~ 152 (209)
|||++ .||..|+.............+.|.+|+.++|+++.++++
T Consensus 623 c~c~~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~ 667 (680)
T 1ziw_A 623 CTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDT 667 (680)
T ss_dssp BCCCCCSSEECCSSCC-----------------------------
T ss_pred cCCccHHHHHHHHHhcCcccccccCCcEECCchHHCCCcccccCh
Confidence 99996 999999843333322334678999999999999999986
No 17
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.72 E-value=5.1e-18 Score=149.74 Aligned_cols=127 Identities=22% Similarity=0.343 Sum_probs=97.7
Q ss_pred ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCC-Ccc
Q psy14513 20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWD-SLE 98 (209)
Q Consensus 20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~-~L~ 98 (209)
+|..|.+ ++|.++.+++..|.++++|++|++++| .++.+.+..|.++++|+.|++++|+++.+|..+..++ +|+
T Consensus 474 ~L~~L~L----s~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~ 548 (606)
T 3vq2_A 474 NLTFLDL----SKCQLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLA 548 (606)
T ss_dssp TCCEEEC----TTSCCCEECTTTTTTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCC
T ss_pred CCCEEEC----CCCcCCccChhhhcccccCCEEECCCC-cCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCc
Confidence 4455555 899999999999999999999999999 9999999999999999999999999999998886666 699
Q ss_pred EEEeeCCCCccccCcHhHHHHHHhcCCCCCCCCCccccCCCCCCCCcccccCCC
Q psy14513 99 VLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNPL 152 (209)
Q Consensus 99 ~l~l~~Np~~C~C~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~l~g~~l~~~~~ 152 (209)
.+++++|||.|+|++.|+..|+...... +.+...+.|..|+.++|.++.++..
T Consensus 549 ~l~l~~N~~~c~c~~~~~~~~l~~~~~~-~~~~~~~~C~~p~~~~~~~l~~~~~ 601 (606)
T 3vq2_A 549 FFNLTNNSVACICEHQKFLQWVKEQKQF-LVNVEQMTCATPVEMNTSLVLDFNN 601 (606)
T ss_dssp EEECCSCCCCCSSTTHHHHTTTTTSSSS-BSSGGGCCCC---------------
T ss_pred EEEccCCCcccCCccHHHHHHHHcCccc-ccCCccceeCCChHhCCCEeeeccc
Confidence 9999999999999999999998443333 4456789999999999999999974
No 18
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.71 E-value=1.1e-16 Score=126.85 Aligned_cols=98 Identities=23% Similarity=0.455 Sum_probs=86.8
Q ss_pred ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCcc
Q psy14513 20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLE 98 (209)
Q Consensus 20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~ 98 (209)
+|..|.+ ++|.|+.+++..|.++++|++|+|++| .++.+++..|..+++|++|+|++|+++.+++.. ..+++|+
T Consensus 108 ~L~~L~L----~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 182 (251)
T 3m19_A 108 QLDKLYL----GGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQ 182 (251)
T ss_dssp TCCEEEC----CSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred CCCEEEc----CCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCC
Confidence 3444555 888999999888889999999999999 999999988988999999999999999988766 8899999
Q ss_pred EEEeeCCCCccc-cCcHhHHHHHHh
Q psy14513 99 VLDIQSNPWTCD-CSIQWLIDYVAK 122 (209)
Q Consensus 99 ~l~l~~Np~~C~-C~~~~~~~~~~~ 122 (209)
.+++++|+|.|+ |++.|+..|+..
T Consensus 183 ~L~l~~N~~~c~~~~~~~l~~~~~~ 207 (251)
T 3m19_A 183 TITLFGNQFDCSRCEILYLSQWIRE 207 (251)
T ss_dssp EEECCSCCBCTTSTTHHHHHHHHHH
T ss_pred EEEeeCCceeCCccccHHHHHHHHh
Confidence 999999999999 999999999943
No 19
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.69 E-value=2e-16 Score=123.97 Aligned_cols=116 Identities=23% Similarity=0.407 Sum_probs=79.2
Q ss_pred ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCCCCcc
Q psy14513 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSNPWTC 109 (209)
Q Consensus 31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np~~C 109 (209)
++|.|+.+++..|..+++|++|++++| .++.++.. +..+++|++|+|++|+++.++... ..+++|+.+++.+|||.|
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCCN-KLTELPRG-IERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTT-GGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CCCcCCccChhHhCcchhhCeEeccCC-cccccCcc-cccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 555555555555555555666666666 55555433 344667777777777777777665 778999999999999999
Q ss_pred ccC-cHhHHHHHHhcCCC-------CCCCCCccccCCCCCCCCcccccCCC
Q psy14513 110 DCS-IQWLIDYVAKRQRT-------DPELNYNLHCSQPVKFSNVHLLSNPL 152 (209)
Q Consensus 110 ~C~-~~~~~~~~~~~~~~-------~~~~~~~~~C~~p~~l~g~~l~~~~~ 152 (209)
+|. +.|+..|+...... .+.+.....|..+ |.++..+..
T Consensus 174 ~c~~~~~l~~~~~~~~~~~~~~~g~~v~~~~~~~C~~~----~~~~~~~~~ 220 (229)
T 3e6j_A 174 ECRDIMYLRNWVADHTSIAMRWDGKAVNDPDSAKCAGT----NTPVRAVTE 220 (229)
T ss_dssp TBGGGHHHHHHHHHCGGGEEEESSSEEECTTCSBBTTT----CCBGGGCCG
T ss_pred CcchhHHHHHHHHhCccccccccCcccCCCCcCccCCC----Cccceeccc
Confidence 996 89999999432221 1245567889874 566776664
No 20
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=99.68 E-value=5.5e-17 Score=116.57 Aligned_cols=102 Identities=23% Similarity=0.344 Sum_probs=85.0
Q ss_pred ceeccccccccc--ccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCCCCccccCcHhHHHHHHhcCCC
Q psy14513 50 QTLYCNFNPKLT--FIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRT 126 (209)
Q Consensus 50 ~~L~Ls~n~~l~--~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np~~C~C~~~~~~~~~~~~~~~ 126 (209)
..++.+++ .++ .++.+. ..+++.|+|++|+|++++.+. ..+++|+.|+|++|||.|||++.||..|+......
T Consensus 11 ~~v~Cs~~-~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~~~~~~ 86 (130)
T 3rfe_A 11 TLVDCGRR-GLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPER 86 (130)
T ss_dssp TEEECCSS-CCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHHHHHTSSCS
T ss_pred CEEEeCCC-CCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHHHHHHHhCccc
Confidence 36788888 888 777653 346999999999999999988 88999999999999999999999999999544332
Q ss_pred CCCCCCccccCCCCCCCCcccccCCCCCcccCcc
Q psy14513 127 DPELNYNLHCSQPVKFSNVHLLSNPLLSHISGEC 160 (209)
Q Consensus 127 ~~~~~~~~~C~~p~~l~g~~l~~~~~~~~~~~~C 160 (209)
.....+.|.+|..++|+.+.++.. .++.|
T Consensus 87 --~~~~~~~C~~P~~l~g~~l~~l~~---~~l~c 115 (130)
T 3rfe_A 87 --APYRDLRCVAPPALRGRLLPYLAE---DELRA 115 (130)
T ss_dssp --GGGTTCBCCBSTTTTTCBGGGCCH---HHHHH
T ss_pred --ccccCcEeCcChHHcCCCcccCCH---HHhhC
Confidence 124578999999999999999986 66664
No 21
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.68 E-value=3.2e-16 Score=117.68 Aligned_cols=112 Identities=26% Similarity=0.528 Sum_probs=95.4
Q ss_pred cccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCc
Q psy14513 19 YTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSL 97 (209)
Q Consensus 19 ~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L 97 (209)
.++..|.+ ++|.++.+++..|.++++|++|++++| .++.+++..|..+++|+.|++++|+++.++... ..+++|
T Consensus 52 ~~L~~L~l----~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 126 (177)
T 2o6r_A 52 TQLTKLSL----SQNQIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSL 126 (177)
T ss_dssp TTCSEEEC----CSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred ccccEEEC----CCCcceEeChhHccCCCccCEEECCCC-CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCccc
Confidence 34455665 889999999999999999999999999 999999998888999999999999999998887 889999
Q ss_pred cEEEeeCCCCccccC-cHhHHHHHHhcCCCCCCCCCccccCC
Q psy14513 98 EVLDIQSNPWTCDCS-IQWLIDYVAKRQRTDPELNYNLHCSQ 138 (209)
Q Consensus 98 ~~l~l~~Np~~C~C~-~~~~~~~~~~~~~~~~~~~~~~~C~~ 138 (209)
+++++++|+|.|+|+ +.|+..|+.+..... .....|..
T Consensus 127 ~~L~l~~N~~~~~~~~l~~l~~~~~~~~~~~---~~~~~C~~ 165 (177)
T 2o6r_A 127 QKIWLHTNPWDCSCPRIDYLSRWLNKNSQKE---QGSAKCSG 165 (177)
T ss_dssp CEEECCSSCBCCCHHHHHHHHHHHHHTGGGE---ESCCBBTT
T ss_pred CEEEecCCCeeccCccHHHHHHHHhhCcccc---ccCcEeCC
Confidence 999999999999998 788999984443321 25678876
No 22
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.67 E-value=2e-17 Score=145.96 Aligned_cols=119 Identities=18% Similarity=0.300 Sum_probs=100.1
Q ss_pred ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCCCCcc
Q psy14513 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSNPWTC 109 (209)
Q Consensus 31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np~~C 109 (209)
++|.++.+++..|.++++|++|++++| .++.+.+..|..+..| .|++++|+++.+++.. ..+++|+.+++++|||.|
T Consensus 484 s~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 484 SFCDLSSIDQHAFTSLKMMNHVDLSHN-RLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSS-CCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred CCCccCccChhhhccccCCCEEECCCC-ccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence 778888888888888888888888888 8888888888888888 8888888888877665 778899999999999999
Q ss_pred ccCcHhHHHHHHhcCCCCCCCCCccccCCCCCCCCcccccCCC
Q psy14513 110 DCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNPL 152 (209)
Q Consensus 110 ~C~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~l~g~~l~~~~~ 152 (209)
+|+..|+..|+...... ......+.|.+|+.++|+++.+++.
T Consensus 562 ~c~~~~~~~w~~~~~~~-~~~~~~~~C~~p~~~~g~~l~~~~~ 603 (606)
T 3t6q_A 562 TCSNIYFLEWYKENMQK-LEDTEDTLCENPPLLRGVRLSDVTL 603 (606)
T ss_dssp SGGGHHHHHHHHHCGGG-EECGGGCBEEESGGGTTCBGGGCCC
T ss_pred cCCcHHHHHHHHhCccc-ccCCCCCeeCCchHhCCCeeeeeec
Confidence 99999999999543332 3455779999999999999999874
No 23
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.67 E-value=5.8e-17 Score=139.31 Aligned_cols=135 Identities=21% Similarity=0.330 Sum_probs=110.1
Q ss_pred ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCcc
Q psy14513 20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLE 98 (209)
Q Consensus 20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~ 98 (209)
+|..|.+ ++|.++.+++..|.++++|++|+|++| .++.+.+.+|.++++|+.|++++|+++.++... ..+++|+
T Consensus 249 ~L~~L~L----s~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 323 (477)
T 2id5_A 249 YLRFLNL----SYNPISTIEGSMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLE 323 (477)
T ss_dssp TCCEEEC----CSSCCCEECTTSCTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCC
T ss_pred ccCeeEC----CCCcCCccChhhccccccCCEEECCCC-ccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccC
Confidence 3445555 889999999999999999999999999 999999999999999999999999999998877 8899999
Q ss_pred EEEeeCCCCccccCcHhHHHHHHhcCCCCCCCCCccccCCCCCCCCcccccCCC-CCcccCccCCC
Q psy14513 99 VLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNPL-LSHISGECVKG 163 (209)
Q Consensus 99 ~l~l~~Np~~C~C~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~l~g~~l~~~~~-~~~~~~~C~~~ 163 (209)
.+++++|||.|||.+.|+..|.. ..........|..|..++|..+.++.. +-.+...|..+
T Consensus 324 ~L~l~~N~l~c~c~~~~~~~~~~----~~~~~~~~~~C~~p~~~~g~~l~~~~~~~~~~~~~C~~P 385 (477)
T 2id5_A 324 TLILDSNPLACDCRLLWVFRRRW----RLNFNRQQPTCATPEFVQGKEFKDFPDVLLPNYFTCRRA 385 (477)
T ss_dssp EEECCSSCEECSGGGHHHHTTTT----SSCCTTCCCBEEESGGGTTCBGGGSCSSCCTTSSCCEEE
T ss_pred EEEccCCCccCccchHhHHhhhh----ccccCccCceeCCchHHcCCchhhCccccccceeEeccc
Confidence 99999999999999999887641 112334568999999999999987753 00124567543
No 24
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.60 E-value=2.1e-16 Score=131.69 Aligned_cols=131 Identities=21% Similarity=0.385 Sum_probs=86.2
Q ss_pred cccCCcccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC
Q psy14513 12 DISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL 91 (209)
Q Consensus 12 ~~~~~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~ 91 (209)
.++...+.++..|..| ++++|.|+.+++..|.++++|+.|+|++| .+..+++..|.++++|+.|+|++|+++.+|...
T Consensus 78 ~i~~~~~~~l~~L~~L-~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~ 155 (361)
T 2xot_A 78 FISSEAFVPVPNLRYL-DLSSNHLHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVEL 155 (361)
T ss_dssp EECTTTTTTCTTCCEE-ECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCGGG
T ss_pred ccChhhccCCCCCCEE-ECCCCcCCcCCHHHhCCCcCCCEEECCCC-cccEECHHHhCCcccCCEEECCCCcCCeeCHHH
Confidence 3443344433333332 22678888887777888888888888888 788887777777777788888877777766543
Q ss_pred ----CCCCCc--------------------------cEEEeeCCCCccccCcHhH-HHHHHhcCCCCCCCCCccccCCCC
Q psy14513 92 ----GDWDSL--------------------------EVLDIQSNPWTCDCSIQWL-IDYVAKRQRTDPELNYNLHCSQPV 140 (209)
Q Consensus 92 ----~~l~~L--------------------------~~l~l~~Np~~C~C~~~~~-~~~~~~~~~~~~~~~~~~~C~~p~ 140 (209)
..+++| +.+++++|||.|||++.|+ ..|..............+.|..|.
T Consensus 156 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l~~~~~~~~~~~~~~~~~~~~~~~C~~p~ 235 (361)
T 2xot_A 156 IKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSK 235 (361)
T ss_dssp TC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHHHHHHHHHHHHTTCHHHHTTGGGCEEESSS
T ss_pred hcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcCcHHHHHHHHHhcCCchhccCcCCEeCCCh
Confidence 123332 5578899999999999986 567733222212234568999887
Q ss_pred CCCC
Q psy14513 141 KFSN 144 (209)
Q Consensus 141 ~l~g 144 (209)
.+.+
T Consensus 236 ~~~~ 239 (361)
T 2xot_A 236 KLHN 239 (361)
T ss_dssp CCEE
T ss_pred HHcC
Confidence 6543
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.57 E-value=1.4e-14 Score=123.35 Aligned_cols=112 Identities=27% Similarity=0.502 Sum_probs=95.7
Q ss_pred ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCcc
Q psy14513 20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLE 98 (209)
Q Consensus 20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~ 98 (209)
+|..|.+ ++|.+..+++..|.++++|++|++++| .++.+.+..|.++++|++|++++|+++.+|... ..+++|+
T Consensus 324 ~L~~L~L----s~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 398 (455)
T 3v47_A 324 HLLKLNL----SQNFLGSIDSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQ 398 (455)
T ss_dssp TCCEEEC----CSSCCCEECGGGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred cCCEEEC----CCCccCCcChhHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCCccccCCHhHhccCCccc
Confidence 3444555 889999999999999999999999999 999999999999999999999999999998877 8999999
Q ss_pred EEEeeCCCCccccC-cHhHHHHHHhcCCCCCCCCCccccCCC
Q psy14513 99 VLDIQSNPWTCDCS-IQWLIDYVAKRQRTDPELNYNLHCSQP 139 (209)
Q Consensus 99 ~l~l~~Np~~C~C~-~~~~~~~~~~~~~~~~~~~~~~~C~~p 139 (209)
.+++++|||.|+|+ ..|+..|+...... ......|..+
T Consensus 399 ~L~l~~N~l~~~~~~~~~l~~~l~~~~~~---~~~~~~c~~~ 437 (455)
T 3v47_A 399 KIWLHTNPWDCSCPRIDYLSRWLNKNSQK---EQGSAKCSGS 437 (455)
T ss_dssp EEECCSSCBCCCTTTTHHHHHHHHHTTTT---EESCCBBTTT
T ss_pred EEEccCCCcccCCCcchHHHHHHHhCccc---eeeeeeecCC
Confidence 99999999999998 78999999443332 2345688764
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.57 E-value=1.2e-14 Score=127.37 Aligned_cols=99 Identities=20% Similarity=0.308 Sum_probs=81.6
Q ss_pred cccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCCCCccccCcHhHHH-HHHhcC
Q psy14513 47 LNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSNPWTCDCSIQWLID-YVAKRQ 124 (209)
Q Consensus 47 ~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np~~C~C~~~~~~~-~~~~~~ 124 (209)
++|+.|++++| .++.+++..| ++++|+.|++++|+++++|... ..+++|+.+++++|||.|+|++.|+.. |.....
T Consensus 450 ~~L~~L~L~~N-~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~~ 527 (562)
T 3a79_B 450 PKVKVLDLHNN-RIMSIPKDVT-HLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHS 527 (562)
T ss_dssp TTCSEEECCSS-CCCCCCTTTT-SSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHHHHHHHHHHHTT
T ss_pred CcCCEEECCCC-cCcccChhhc-CCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchHHHHHHHHHhcC
Confidence 57888888888 8888888887 6899999999999999999984 889999999999999999999999976 874443
Q ss_pred CCCC-----CCCCccccCCCCCCCCcccccCC
Q psy14513 125 RTDP-----ELNYNLHCSQPVKFSNVHLLSNP 151 (209)
Q Consensus 125 ~~~~-----~~~~~~~C~~p~~l~g~~l~~~~ 151 (209)
.... .....+.|.. +|+++.++.
T Consensus 528 ~~~~~~~~~~~~~~~~C~~----~g~~l~~~~ 555 (562)
T 3a79_B 528 GVVRNSAGSVAPDSAKCSG----SGKPVRSII 555 (562)
T ss_dssp TTEECSSSSBCSSSSCBSS----SCCCTTTCC
T ss_pred CcccccccCCCCCCCccCC----CCcEeeeec
Confidence 3322 3456788977 777777765
No 27
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.55 E-value=1.3e-13 Score=105.87 Aligned_cols=100 Identities=25% Similarity=0.524 Sum_probs=85.0
Q ss_pred ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCcc
Q psy14513 20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLE 98 (209)
Q Consensus 20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~ 98 (209)
+|..|.+ ++|.++.+++..|.++++|++|++++| .++.+++..|..+++|+.|++++|+++.++... ..+++|+
T Consensus 77 ~L~~L~L----s~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 151 (208)
T 2o6s_A 77 SLTYLNL----STNQLQSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 151 (208)
T ss_dssp TCCEEEC----CSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred CcCEEEC----CCCcCCccCHhHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCcc
Confidence 3445555 788999888888888999999999999 999998888888899999999999999988876 8899999
Q ss_pred EEEeeCCCCccccC-cHhHHHHHHhcC
Q psy14513 99 VLDIQSNPWTCDCS-IQWLIDYVAKRQ 124 (209)
Q Consensus 99 ~l~l~~Np~~C~C~-~~~~~~~~~~~~ 124 (209)
.+++++|+|.|+|+ +.++..|..+..
T Consensus 152 ~L~l~~N~~~~~~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 152 YIWLHDNPWDCTCPGIRYLSEWINKHS 178 (208)
T ss_dssp EEECCSCCBCCCTTTTHHHHHHHHHCT
T ss_pred EEEecCCCeecCCCCHHHHHHHHHhCC
Confidence 99999999999997 677777764433
No 28
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.51 E-value=6.4e-14 Score=121.46 Aligned_cols=103 Identities=19% Similarity=0.302 Sum_probs=81.5
Q ss_pred ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCCCCcc
Q psy14513 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSNPWTC 109 (209)
Q Consensus 31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np~~C 109 (209)
++|.++...+..+. ++|+.|++++| .++.+++..+ .+++|++|++++|+++.+|... ..+++|+.+++++|||.|
T Consensus 407 s~N~l~~~~~~~l~--~~L~~L~Ls~N-~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 407 SSNILTDTIFRCLP--PRIKVLDLHSN-KIKSIPKQVV-KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp CSSCCCGGGGGSCC--TTCCEEECCSS-CCCCCCGGGG-GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCCCCCcchhhhhc--ccCCEEECCCC-cccccchhhh-cCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcc
Confidence 55655543333322 57888888888 8888877777 6899999999999999999885 889999999999999999
Q ss_pred ccCcHhH-HHHHHhcCCCCCCCCCccccCCCC
Q psy14513 110 DCSIQWL-IDYVAKRQRTDPELNYNLHCSQPV 140 (209)
Q Consensus 110 ~C~~~~~-~~~~~~~~~~~~~~~~~~~C~~p~ 140 (209)
+|++.|+ ..|+.+.... ....+.|..|.
T Consensus 483 ~c~~~~~~~~~~~~~~~~---~~~~~~C~~p~ 511 (520)
T 2z7x_B 483 SCPRIDYLSRWLNKNSQK---EQGSAKCSGSG 511 (520)
T ss_dssp CHHHHHHHHHHHHHTTTT---EESCCBBTTTC
T ss_pred cCCchHHHHHHHHhcccc---CCCCCCcCCcc
Confidence 9999999 8998544332 34678999873
No 29
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.51 E-value=1.1e-13 Score=110.74 Aligned_cols=104 Identities=25% Similarity=0.552 Sum_probs=76.7
Q ss_pred ccccccccCchhhcCCcccc----eecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCC
Q psy14513 31 ANSELYAIRKNTFKNLLNLQ----TLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSN 105 (209)
Q Consensus 31 s~n~l~~l~~~~f~~l~~L~----~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~N 105 (209)
++|.++.+++..|..+.+|+ .|++++| .++.+++..|.. .+|+.|++++|+++.++... ..+++|+.+++++|
T Consensus 157 s~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n-~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 157 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp CSSCCCEECGGGGHHHHTCTTCCEEEECCSS-CCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred CCCCCCcCCHHHhhhhhhccccceeeecCCC-cccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence 55666665555555555555 5566666 666666666653 47999999999999998887 88999999999999
Q ss_pred CCccccC-cHhHHHHHHhcCCCCCCCCCccccCCC
Q psy14513 106 PWTCDCS-IQWLIDYVAKRQRTDPELNYNLHCSQP 139 (209)
Q Consensus 106 p~~C~C~-~~~~~~~~~~~~~~~~~~~~~~~C~~p 139 (209)
||.|+|+ +.|+..|+...... ......|..|
T Consensus 235 ~~~c~c~~l~~l~~~~~~~~~~---~~~~~~C~~~ 266 (276)
T 2z62_A 235 PWDCSCPRIDYLSRWLNKNSQK---EQGSAKCSGS 266 (276)
T ss_dssp CBCCCTTTTHHHHHHHHHTGGG---BCSCCBBTTT
T ss_pred cccccCCchHHHHHHHHhcccc---cCCCceeeCC
Confidence 9999997 78899998443332 2345689875
No 30
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.50 E-value=4.2e-13 Score=107.34 Aligned_cols=97 Identities=27% Similarity=0.558 Sum_probs=83.5
Q ss_pred ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCcc
Q psy14513 20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLE 98 (209)
Q Consensus 20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~ 98 (209)
+|..|.+ ++|.++.+++..|.++++|++|++++| .++.+++..|..+++|+.|++++|+++.+++.. ..+++|+
T Consensus 134 ~L~~L~L----~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 208 (272)
T 3rfs_A 134 NLTYLNL----AHNQLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 208 (272)
T ss_dssp TCCEEEC----CSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred CCCEEEC----CCCccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCC
Confidence 3444555 788999988888888999999999999 999888888888899999999999999988776 8899999
Q ss_pred EEEeeCCCCccccC-cHhHHHHHH
Q psy14513 99 VLDIQSNPWTCDCS-IQWLIDYVA 121 (209)
Q Consensus 99 ~l~l~~Np~~C~C~-~~~~~~~~~ 121 (209)
.+++++|||.|+|+ +.++..|..
T Consensus 209 ~L~l~~N~~~~~~~~l~~l~~~~n 232 (272)
T 3rfs_A 209 YIWLHDNPWDCTCPGIRYLSEWIN 232 (272)
T ss_dssp EEECCSSCBCCCTTTTHHHHHHHH
T ss_pred EEEccCCCccccCcHHHHHHHHHH
Confidence 99999999999997 677776763
No 31
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.47 E-value=1.5e-13 Score=120.05 Aligned_cols=112 Identities=22% Similarity=0.422 Sum_probs=91.5
Q ss_pred ccceecccccccccccc-ccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCc
Q psy14513 20 TIMKVQLPYSTANSELY-AIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSL 97 (209)
Q Consensus 20 ~l~~L~ll~~~s~n~l~-~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L 97 (209)
++..|.+ ++|.+. ...+..|.++++|++|++++| .++.+.+..|..+++|+.|++++|+++.+++.. ..+++|
T Consensus 446 ~L~~L~l----~~n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 520 (570)
T 2z63_A 446 SLEVLKM----AGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSL 520 (570)
T ss_dssp TCCEEEC----TTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred cCcEEEC----cCCcCccccchhhhhcccCCCEEECCCC-ccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCC
Confidence 3444555 788887 344578888999999999999 999999999999999999999999999988776 899999
Q ss_pred cEEEeeCCCCccccCcHhHH-HHHHhcCCCCCCCCCccccCCC
Q psy14513 98 EVLDIQSNPWTCDCSIQWLI-DYVAKRQRTDPELNYNLHCSQP 139 (209)
Q Consensus 98 ~~l~l~~Np~~C~C~~~~~~-~~~~~~~~~~~~~~~~~~C~~p 139 (209)
+.+++++|||.|+|+..|+. .|+.......... . .|.+|
T Consensus 521 ~~L~l~~N~~~~~~~~~~~~~~wl~~~~~~~~~~-~--~C~~~ 560 (570)
T 2z63_A 521 QKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGS-A--KCSGS 560 (570)
T ss_dssp CEEECCSSCBCCCTTTTHHHHHHHHHTGGGEESC-C--BBTTT
T ss_pred cEEEecCCcccCCCcchHHHHHHHHhccccCCCc-h--hhCCC
Confidence 99999999999999998888 9995443332222 2 99886
No 32
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.43 E-value=4.5e-13 Score=116.69 Aligned_cols=99 Identities=28% Similarity=0.439 Sum_probs=81.0
Q ss_pred ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCCCCcc
Q psy14513 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSNPWTC 109 (209)
Q Consensus 31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np~~C 109 (209)
++|+++.++ .++++|++|++++| +++.++... .+++|+.|++++|+++.+++.. ..+++|+.+++++|||.|
T Consensus 439 s~N~l~~~~----~~l~~L~~L~Ls~N-~l~~ip~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 511 (549)
T 2z81_A 439 SNNNLDSFS----LFLPRLQELYISRN-KLKTLPDAS--LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 511 (549)
T ss_dssp CSSCCSCCC----CCCTTCCEEECCSS-CCSSCCCGG--GCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCC
T ss_pred CCCChhhhc----ccCChhcEEECCCC-ccCcCCCcc--cCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccC
Confidence 566665543 36889999999999 999988754 4789999999999999988876 889999999999999999
Q ss_pred ccC-cHhHHHHHHhcCCCCCCCCCccccCCC
Q psy14513 110 DCS-IQWLIDYVAKRQRTDPELNYNLHCSQP 139 (209)
Q Consensus 110 ~C~-~~~~~~~~~~~~~~~~~~~~~~~C~~p 139 (209)
+|+ ..|+..|++..... ......|..|
T Consensus 512 ~~~~~~~l~~~l~~~~~~---~~~~~~C~~~ 539 (549)
T 2z81_A 512 SCPRIDYLSRWLNKNSQK---EQGSAKCSGS 539 (549)
T ss_dssp CHHHHHHHHHHHHHCTTT---EESCCBBTTT
T ss_pred CCccHHHHHHHHHhcccc---cCCCCeECCC
Confidence 999 67888899544332 3456899875
No 33
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.40 E-value=1.8e-13 Score=113.25 Aligned_cols=69 Identities=26% Similarity=0.579 Sum_probs=58.2
Q ss_pred cCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCCCCccccC-cHhHHHHHHhcCCCCCCCCCccccCCC
Q psy14513 68 FNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSNPWTCDCS-IQWLIDYVAKRQRTDPELNYNLHCSQP 139 (209)
Q Consensus 68 f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np~~C~C~-~~~~~~~~~~~~~~~~~~~~~~~C~~p 139 (209)
+..+++|+.|++++|+++.+|... ..+++|+.+++++|||.|+|+ +.|+..|..+..... ...+.|+.|
T Consensus 273 l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l~~l~~~~~~~~~~~---~~~~~C~~p 343 (353)
T 2z80_A 273 LNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKE---QGSAKCSGS 343 (353)
T ss_dssp HHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTTTTE---ESCCBBTTT
T ss_pred HhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCCcHHHHHHHHhccccC---CCCcccCCC
Confidence 345678999999999999999987 899999999999999999997 899999985544432 356899886
No 34
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.38 E-value=6.1e-13 Score=117.07 Aligned_cols=95 Identities=17% Similarity=0.181 Sum_probs=63.2
Q ss_pred CCCCCcccccCCcccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcC
Q psy14513 5 QNSGSRQDISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAI 84 (209)
Q Consensus 5 ~~~~~~~~~~~~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l 84 (209)
+.+.-|+.+|.+.. .|++ ++|+|+.+++.+|.++++|++|+|++| .|+.+++++|.++++|++|+|++|++
T Consensus 42 ~l~~vP~~lp~~~~----~LdL----s~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~l 112 (635)
T 4g8a_A 42 NFYKIPDNLPFSTK----NLDL----SFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPI 112 (635)
T ss_dssp CCSSCCSSSCTTCC----EEEC----TTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred CcCccCCCCCcCCC----EEEe----eCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCcC
Confidence 44566666665433 3666 677777777777777777777777777 77777777777777777777777777
Q ss_pred cccCCCC-CCCCCccEEEeeCCCCc
Q psy14513 85 TSLPHEL-GDWDSLEVLDIQSNPWT 108 (209)
Q Consensus 85 ~~l~~~~-~~l~~L~~l~l~~Np~~ 108 (209)
+.+|+.. ..+++|++|++++|.+.
T Consensus 113 ~~l~~~~f~~L~~L~~L~Ls~N~l~ 137 (635)
T 4g8a_A 113 QSLALGAFSGLSSLQKLVAVETNLA 137 (635)
T ss_dssp CEECGGGGTTCTTCCEEECTTSCCC
T ss_pred CCCCHHHhcCCCCCCEEECCCCcCC
Confidence 7666554 66666666666666553
No 35
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.35 E-value=4.2e-12 Score=96.74 Aligned_cols=95 Identities=16% Similarity=0.234 Sum_probs=82.8
Q ss_pred CCCCCcccccCCcccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcC
Q psy14513 5 QNSGSRQDISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAI 84 (209)
Q Consensus 5 ~~~~~~~~~~~~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l 84 (209)
+....|..++ .++..|.+ ++|.|+.++ ..|.++++|+.|+|++| .++.+++.+|.++++|+.|+|++|++
T Consensus 21 ~l~~ip~~~~----~~l~~L~L----~~n~i~~ip-~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 21 GLKVLPKGIP----RDVTELYL----DGNQFTLVP-KELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp CCSSCCSCCC----TTCCEEEC----CSSCCCSCC-GGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCcCCCCCC----CCCCEEEC----CCCcCchhH-HHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCcc
Confidence 3344444444 45667888 999999988 78999999999999999 99999999999999999999999999
Q ss_pred cccCCCC-CCCCCccEEEeeCCCCcc
Q psy14513 85 TSLPHEL-GDWDSLEVLDIQSNPWTC 109 (209)
Q Consensus 85 ~~l~~~~-~~l~~L~~l~l~~Np~~C 109 (209)
+.+++.. ..+++|+.|++++|.+..
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~ 116 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISV 116 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCe
Confidence 9998876 899999999999999874
No 36
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.35 E-value=3.2e-12 Score=99.32 Aligned_cols=96 Identities=23% Similarity=0.345 Sum_probs=74.9
Q ss_pred CCCCCcccccCCcccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcC
Q psy14513 5 QNSGSRQDISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAI 84 (209)
Q Consensus 5 ~~~~~~~~~~~~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l 84 (209)
+....|..++ .++..|.+ ++|.|+.+++..|.++++|+.|+|++| .++.+.+.+|.++++|++|+|++|++
T Consensus 22 ~l~~iP~~l~----~~l~~L~l----~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 22 GLTEIPTNLP----ETITEIRL----EQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp CCSSCCSSCC----TTCCEEEC----CSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred CcCcCCCccC----cCCCEEEC----CCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 3444455444 34555777 888888888888888888888888888 88888888888888888888888888
Q ss_pred cccCCCC-CCCCCccEEEeeCCCCcc
Q psy14513 85 TSLPHEL-GDWDSLEVLDIQSNPWTC 109 (209)
Q Consensus 85 ~~l~~~~-~~l~~L~~l~l~~Np~~C 109 (209)
+.+|... ..+++|+.|++++|.+..
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~ 118 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINC 118 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CccCHhHccCCCCCCEEECCCCCCCE
Confidence 8888776 778888888888887765
No 37
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.33 E-value=5.4e-12 Score=95.95 Aligned_cols=98 Identities=23% Similarity=0.346 Sum_probs=84.2
Q ss_pred CCCCCCcccccCCcccccceeccccccccccccccCch-hhcCCcccceecccccccccccCccccCCCCCcCEEeccCC
Q psy14513 4 KQNSGSRQDISYDTQYTIMKVQLPYSTANSELYAIRKN-TFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNN 82 (209)
Q Consensus 4 ~~~~~~~~~~~~~~~~~l~~L~ll~~~s~n~l~~l~~~-~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N 82 (209)
++....|..++. ++..|.+ ++|.|+.+++. .|..+++|++|+|++| .++.+.+.+|.++++|+.|+|++|
T Consensus 18 ~~l~~ip~~~~~----~l~~L~l----~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 18 RGLKEIPRDIPL----HTTELLL----NDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp SCCSSCCSCCCT----TCSEEEC----CSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CCcCcCccCCCC----CCCEEEC----CCCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCCC
Confidence 344444544443 5667888 99999999875 6999999999999999 999999999999999999999999
Q ss_pred cCcccCCCC-CCCCCccEEEeeCCCCccc
Q psy14513 83 AITSLPHEL-GDWDSLEVLDIQSNPWTCD 110 (209)
Q Consensus 83 ~l~~l~~~~-~~l~~L~~l~l~~Np~~C~ 110 (209)
+++.+++.. ..+++|++|++++|.+...
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 117 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCV 117 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEE
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCee
Confidence 999988775 8899999999999998753
No 38
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.32 E-value=7.6e-12 Score=97.70 Aligned_cols=95 Identities=21% Similarity=0.279 Sum_probs=63.6
Q ss_pred CCCCCcccccCCcccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcC
Q psy14513 5 QNSGSRQDISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAI 84 (209)
Q Consensus 5 ~~~~~~~~~~~~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l 84 (209)
+....|..++ .++..|.+ ++|.|+.+++..|.++++|++|+|++| .++.+++..|.++++|+.|+|++|++
T Consensus 30 ~l~~ip~~~~----~~L~~L~L----s~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l 100 (229)
T 3e6j_A 30 RHASVPAGIP----TNAQILYL----HDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTNQL 100 (229)
T ss_dssp CCSSCCSCCC----TTCSEEEC----CSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CcCccCCCCC----CCCCEEEc----CCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCCcC
Confidence 3344444444 33444666 677777777777777777777777777 77777777777777777777777777
Q ss_pred cccCCCC-CCCCCccEEEeeCCCCc
Q psy14513 85 TSLPHEL-GDWDSLEVLDIQSNPWT 108 (209)
Q Consensus 85 ~~l~~~~-~~l~~L~~l~l~~Np~~ 108 (209)
+.++... ..+++|+.|++++|.+.
T Consensus 101 ~~l~~~~~~~l~~L~~L~Ls~N~l~ 125 (229)
T 3e6j_A 101 TVLPSAVFDRLVHLKELFMCCNKLT 125 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CccChhHhCcchhhCeEeccCCccc
Confidence 7766655 66777777777777665
No 39
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.31 E-value=6.8e-12 Score=97.42 Aligned_cols=77 Identities=26% Similarity=0.399 Sum_probs=41.5
Q ss_pred ccccccccC-chhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCCCCc
Q psy14513 31 ANSELYAIR-KNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSNPWT 108 (209)
Q Consensus 31 s~n~l~~l~-~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np~~ 108 (209)
++|.|+.++ .+.|.++++|+.|++++| .++.+++.+|.++++|+.|+|++|+++.+++.. ..+++|+.|++++|.+.
T Consensus 40 ~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 118 (220)
T 2v70_A 40 NNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT 118 (220)
T ss_dssp CSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCC
T ss_pred CCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCC
Confidence 555555553 244555555555555555 555555555555555555555555555554443 45555555555555544
No 40
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.29 E-value=1.7e-11 Score=91.71 Aligned_cols=85 Identities=20% Similarity=0.354 Sum_probs=79.1
Q ss_pred cccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCc
Q psy14513 19 YTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSL 97 (209)
Q Consensus 19 ~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L 97 (209)
.++..|.+ ++|.++.+++..|.++++|++|++++| .++.+++..|..+++|+.|++++|+++.++... ..+++|
T Consensus 28 ~~l~~L~l----~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 102 (177)
T 2o6r_A 28 SSATRLEL----ESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQL 102 (177)
T ss_dssp TTCSEEEC----CSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCcEEEe----CCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCCCccccCHHHhhCCccc
Confidence 45667888 999999999999999999999999999 999999999999999999999999999998877 889999
Q ss_pred cEEEeeCCCCc
Q psy14513 98 EVLDIQSNPWT 108 (209)
Q Consensus 98 ~~l~l~~Np~~ 108 (209)
+.+++++|.+.
T Consensus 103 ~~L~l~~N~l~ 113 (177)
T 2o6r_A 103 KELALDTNQLK 113 (177)
T ss_dssp CEEECCSSCCS
T ss_pred CEEECcCCcce
Confidence 99999999887
No 41
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.25 E-value=3.1e-11 Score=97.53 Aligned_cols=84 Identities=24% Similarity=0.347 Sum_probs=76.6
Q ss_pred ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCcc
Q psy14513 20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLE 98 (209)
Q Consensus 20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~ 98 (209)
++..|.+ ++|.|+.++++.|.++++|++|++++| .++.++++.|..+++|+.|+|++|+++.+|... ..+++|+
T Consensus 101 ~L~~L~l----~~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~ 175 (290)
T 1p9a_G 101 ALTVLDV----SFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175 (290)
T ss_dssp TCCEEEC----CSSCCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCC
T ss_pred CCCEEEC----CCCcCcccCHHHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCC
Confidence 4455666 899999999999999999999999999 999999999999999999999999999999887 8899999
Q ss_pred EEEeeCCCCc
Q psy14513 99 VLDIQSNPWT 108 (209)
Q Consensus 99 ~l~l~~Np~~ 108 (209)
.|++++|.+.
T Consensus 176 ~L~L~~N~l~ 185 (290)
T 1p9a_G 176 TLLLQENSLY 185 (290)
T ss_dssp EEECCSSCCC
T ss_pred EEECCCCcCC
Confidence 9999999887
No 42
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.24 E-value=2.1e-11 Score=101.37 Aligned_cols=76 Identities=28% Similarity=0.345 Sum_probs=37.3
Q ss_pred ccccccccCchhhc-CCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCCCC
Q psy14513 31 ANSELYAIRKNTFK-NLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSNPW 107 (209)
Q Consensus 31 s~n~l~~l~~~~f~-~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np~ 107 (209)
++|.|+.+++..|. ++++|+.|+|++| .++.+++.+|.++++|++|+|++|+++.++... ..+++|+.|++++|.+
T Consensus 47 s~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i 124 (361)
T 2xot_A 47 SHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHI 124 (361)
T ss_dssp CSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcc
Confidence 45555555544444 4555555555555 555555444444444555555555554444433 4444444444444444
No 43
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.22 E-value=6.4e-11 Score=90.70 Aligned_cols=84 Identities=25% Similarity=0.345 Sum_probs=54.0
Q ss_pred ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCcc
Q psy14513 20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLE 98 (209)
Q Consensus 20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~ 98 (209)
++..|.+ ++|.++.+++..|.++++|++|++++| .++.+++..|..+++|++|++++|+++.++... ..+++|+
T Consensus 29 ~l~~L~l----~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 103 (208)
T 2o6s_A 29 QTTYLDL----ETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLK 103 (208)
T ss_dssp TCSEEEC----CSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCcEEEc----CCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCC
Confidence 3444555 666666666666666666666666666 666666666666666666666666666666554 5666666
Q ss_pred EEEeeCCCCc
Q psy14513 99 VLDIQSNPWT 108 (209)
Q Consensus 99 ~l~l~~Np~~ 108 (209)
+|++++|.+.
T Consensus 104 ~L~L~~N~l~ 113 (208)
T 2o6s_A 104 ELALNTNQLQ 113 (208)
T ss_dssp EEECCSSCCC
T ss_pred EEEcCCCcCc
Confidence 6666666554
No 44
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.22 E-value=5.1e-11 Score=93.98 Aligned_cols=76 Identities=24% Similarity=0.348 Sum_probs=39.6
Q ss_pred ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCCCC
Q psy14513 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSNPW 107 (209)
Q Consensus 31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np~ 107 (209)
++|.+..+++..|.++++|++|++++| .++.+++..|..+++|++|++++|+++.++... ..+++|+.|++++|.+
T Consensus 43 ~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 119 (251)
T 3m19_A 43 QSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQL 119 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcC
Confidence 555555555555555555555555555 555555555555555555555555555544443 4445555555555544
No 45
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.18 E-value=1.1e-10 Score=93.09 Aligned_cols=77 Identities=27% Similarity=0.383 Sum_probs=39.7
Q ss_pred ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCCCCc
Q psy14513 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSNPWT 108 (209)
Q Consensus 31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np~~ 108 (209)
++|.++.+++..|.++++|++|++++| .++.+++..|.++++|++|++++|+++.+++.. ..+++|++|++++|.+.
T Consensus 69 ~~n~l~~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 146 (270)
T 2o6q_A 69 NDNKLQTLPAGIFKELKNLETLWVTDN-KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ 146 (270)
T ss_dssp CSSCCSCCCTTTTSSCTTCCEEECCSS-CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCccCeeChhhhcCCCCCCEEECCCC-cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC
Confidence 444555555444555555555555555 555555544544555555555555555544443 45555555555555443
No 46
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.16 E-value=2.8e-11 Score=98.80 Aligned_cols=84 Identities=21% Similarity=0.350 Sum_probs=67.7
Q ss_pred ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccEEEeeCCCCccc
Q psy14513 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWTCD 110 (209)
Q Consensus 31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~l~~Np~~C~ 110 (209)
++|.++.++... .+++|++|++++| .++.+++. |..+++|+.|++++|+++.+|..+..+++|+.+++++|++.|+
T Consensus 177 ~~N~l~~~~~~~--~l~~L~~L~Ls~N-~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~ 252 (317)
T 3o53_A 177 QYNFIYDVKGQV--VFAKLKTLDLSSN-KLAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCG 252 (317)
T ss_dssp TTSCCCEEECCC--CCTTCCEEECCSS-CCCEECGG-GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHH
T ss_pred CCCcCccccccc--ccccCCEEECCCC-cCCcchhh-hcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCc
Confidence 666666665433 3777888888888 88888776 6678889999999999999988778899999999999999998
Q ss_pred cCcHhHHH
Q psy14513 111 CSIQWLID 118 (209)
Q Consensus 111 C~~~~~~~ 118 (209)
|...|+..
T Consensus 253 ~~~~~~~~ 260 (317)
T 3o53_A 253 TLRDFFSK 260 (317)
T ss_dssp HHHHHHHT
T ss_pred CHHHHHhc
Confidence 76655543
No 47
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.15 E-value=1.1e-10 Score=99.67 Aligned_cols=93 Identities=25% Similarity=0.280 Sum_probs=73.0
Q ss_pred CCCcccccCCcccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcc
Q psy14513 7 SGSRQDISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITS 86 (209)
Q Consensus 7 ~~~~~~~~~~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~ 86 (209)
...|..++ .++..|.+ ++|+|+.+++..|.++++|+.|+|++| .++.+++.+|.++++|++|+|++|+++.
T Consensus 67 ~~iP~~~~----~~l~~L~L----~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 137 (452)
T 3zyi_A 67 SEVPQGIP----SNTRYLNL----MENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNWLTV 137 (452)
T ss_dssp SSCCSCCC----TTCSEEEC----CSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSB
T ss_pred CccCCCCC----CCccEEEC----cCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCCcCCc
Confidence 44444444 34455777 888888888888888888888888888 8888888888888888888888888888
Q ss_pred cCCCC-CCCCCccEEEeeCCCCc
Q psy14513 87 LPHEL-GDWDSLEVLDIQSNPWT 108 (209)
Q Consensus 87 l~~~~-~~l~~L~~l~l~~Np~~ 108 (209)
++... ..+++|++|++++|.+.
T Consensus 138 ~~~~~~~~l~~L~~L~L~~N~l~ 160 (452)
T 3zyi_A 138 IPSGAFEYLSKLRELWLRNNPIE 160 (452)
T ss_dssp CCTTTSSSCTTCCEEECCSCCCC
T ss_pred cChhhhcccCCCCEEECCCCCcc
Confidence 87775 77888888888888765
No 48
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.14 E-value=1.5e-10 Score=98.50 Aligned_cols=84 Identities=24% Similarity=0.312 Sum_probs=61.5
Q ss_pred ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCcc
Q psy14513 20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLE 98 (209)
Q Consensus 20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~ 98 (209)
++..|.+ ++|.|+.+++..|.++++|++|+|++| .++.+++.+|.++++|+.|+|++|+++.++... ..+++|+
T Consensus 65 ~l~~L~L----~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 139 (440)
T 3zyj_A 65 NTRLLNL----HENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLK 139 (440)
T ss_dssp TCSEEEC----CSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCC
T ss_pred CCcEEEc----cCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCc
Confidence 3344666 777777777777777777777777777 777777777777777777777777777776654 6777777
Q ss_pred EEEeeCCCCc
Q psy14513 99 VLDIQSNPWT 108 (209)
Q Consensus 99 ~l~l~~Np~~ 108 (209)
.|++++|.+.
T Consensus 140 ~L~L~~N~i~ 149 (440)
T 3zyj_A 140 ELWLRNNPIE 149 (440)
T ss_dssp EEECCSCCCC
T ss_pred eeeCCCCccc
Confidence 7777777654
No 49
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.11 E-value=2.3e-10 Score=100.21 Aligned_cols=96 Identities=16% Similarity=0.211 Sum_probs=79.5
Q ss_pred CCCCCCCcccccCCcccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCC
Q psy14513 3 SKQNSGSRQDISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNN 82 (209)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N 82 (209)
..+....|..++ .+++.|.+ ++|.|+.+++..|.++++|++|++++| .++.+++++|.++++|++|++++|
T Consensus 40 ~~~L~~ip~~~~----~~L~~L~L----s~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 40 NRNLTHVPKDLP----PRTKALSL----SQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp TSCCCSCCTTSC----TTCCEEEC----CSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTS
T ss_pred CCCCccCCCCCC----CCcCEEEC----CCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCC
Confidence 344454555444 45666888 899999999999999999999999999 999999999999999999999999
Q ss_pred cCcccCCCCCCCCCccEEEeeCCCCcc
Q psy14513 83 AITSLPHELGDWDSLEVLDIQSNPWTC 109 (209)
Q Consensus 83 ~l~~l~~~~~~l~~L~~l~l~~Np~~C 109 (209)
+++.+|.. .+++|++|++++|.+.-
T Consensus 111 ~l~~lp~~--~l~~L~~L~Ls~N~l~~ 135 (562)
T 3a79_B 111 RLQNISCC--PMASLRHLDLSFNDFDV 135 (562)
T ss_dssp CCCEECSC--CCTTCSEEECCSSCCSB
T ss_pred cCCccCcc--ccccCCEEECCCCCccc
Confidence 99988876 68888888888887753
No 50
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.10 E-value=4.2e-10 Score=89.79 Aligned_cols=77 Identities=23% Similarity=0.324 Sum_probs=46.3
Q ss_pred ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCCCCc
Q psy14513 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSNPWT 108 (209)
Q Consensus 31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np~~ 108 (209)
++|.++.+++..|.++++|++|++++| .++.+++..|..+++|++|++++|+++.+++.. ..+++|+.|++++|.+.
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 170 (272)
T 3rfs_A 93 TGNQLQSLPNGVFDKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ 170 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCccCccChhHhcCCcCCCEEECCCC-cCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC
Confidence 556666666655666666666666666 666666655555566666666666666555544 55556666666665554
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.10 E-value=1.4e-10 Score=95.77 Aligned_cols=84 Identities=24% Similarity=0.355 Sum_probs=52.1
Q ss_pred ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCcc
Q psy14513 20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLE 98 (209)
Q Consensus 20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~ 98 (209)
++..|.+ ++|.++.+++..|.++++|++|++++| .++.+.+.+|.++++|++|++++|+++.++... ..+++|+
T Consensus 53 ~L~~L~l----~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 127 (353)
T 2z80_A 53 AVKSLDL----SNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLT 127 (353)
T ss_dssp TCCEEEC----TTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCS
T ss_pred cCcEEEC----CCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCC
Confidence 4445555 666666666666666666666666666 666666666666666666666666666655543 5566666
Q ss_pred EEEeeCCCCc
Q psy14513 99 VLDIQSNPWT 108 (209)
Q Consensus 99 ~l~l~~Np~~ 108 (209)
+|++++|++.
T Consensus 128 ~L~L~~n~l~ 137 (353)
T 2z80_A 128 FLNLLGNPYK 137 (353)
T ss_dssp EEECTTCCCS
T ss_pred EEECCCCCCc
Confidence 6666666554
No 52
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.09 E-value=3.5e-10 Score=92.48 Aligned_cols=86 Identities=23% Similarity=0.384 Sum_probs=75.9
Q ss_pred cccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCcc
Q psy14513 19 YTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLE 98 (209)
Q Consensus 19 ~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~ 98 (209)
.++..|.+ ++|.++.+++..|.++++|++|++++| .++.+++..|..+++|+.|++++|+++.+|..+..+++|+
T Consensus 192 ~~L~~L~l----~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~ 266 (330)
T 1xku_A 192 PSLTELHL----DGNKITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQ 266 (330)
T ss_dssp TTCSEEEC----TTSCCCEECTGGGTTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCC
T ss_pred ccCCEEEC----CCCcCCccCHHHhcCCCCCCEEECCCC-cCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcC
Confidence 45666776 889999998889999999999999999 9999998888888999999999999999988888889999
Q ss_pred EEEeeCCCCcc
Q psy14513 99 VLDIQSNPWTC 109 (209)
Q Consensus 99 ~l~l~~Np~~C 109 (209)
.+++++|++..
T Consensus 267 ~L~l~~N~i~~ 277 (330)
T 1xku_A 267 VVYLHNNNISA 277 (330)
T ss_dssp EEECCSSCCCC
T ss_pred EEECCCCcCCc
Confidence 99999998865
No 53
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.09 E-value=2.3e-10 Score=93.69 Aligned_cols=86 Identities=23% Similarity=0.292 Sum_probs=75.6
Q ss_pred cccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCcc
Q psy14513 19 YTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLE 98 (209)
Q Consensus 19 ~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~ 98 (209)
.++..|.+ ++|.++.+++..|.++++|+.|++++| .++.+++..|..+++|+.|++++|+++.+|..+..+++|+
T Consensus 193 ~~L~~L~l----~~n~i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~ 267 (332)
T 2ft3_A 193 ETLNELHL----DHNKIQAIELEDLLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQ 267 (332)
T ss_dssp SSCSCCBC----CSSCCCCCCTTSSTTCTTCSCCBCCSS-CCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCC
T ss_pred CCCCEEEC----CCCcCCccCHHHhcCCCCCCEEECCCC-cCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCC
Confidence 45566666 889999999889999999999999999 9999998888889999999999999999988778889999
Q ss_pred EEEeeCCCCcc
Q psy14513 99 VLDIQSNPWTC 109 (209)
Q Consensus 99 ~l~l~~Np~~C 109 (209)
.+++++|++..
T Consensus 268 ~L~l~~N~l~~ 278 (332)
T 2ft3_A 268 VVYLHTNNITK 278 (332)
T ss_dssp EEECCSSCCCB
T ss_pred EEECCCCCCCc
Confidence 99999998875
No 54
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.08 E-value=6.1e-11 Score=88.65 Aligned_cols=86 Identities=26% Similarity=0.270 Sum_probs=70.8
Q ss_pred ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCC--CCCCCCCc
Q psy14513 20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPH--ELGDWDSL 97 (209)
Q Consensus 20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~--~~~~l~~L 97 (209)
++..|.+ ++|.|+.+ ..|.++++|++|++++| .++.+++..|..+++|++|++++|+++.+|. .+..+++|
T Consensus 43 ~L~~L~L----s~N~l~~~--~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L 115 (176)
T 1a9n_A 43 QFDAIDF----SDNEIRKL--DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSL 115 (176)
T ss_dssp CCSEEEC----CSSCCCEE--CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTC
T ss_pred CCCEEEC----CCCCCCcc--cccccCCCCCEEECCCC-cccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCC
Confidence 4566666 88999888 57888899999999999 9998888877788889999999999988876 44778889
Q ss_pred cEEEeeCCCCccccC
Q psy14513 98 EVLDIQSNPWTCDCS 112 (209)
Q Consensus 98 ~~l~l~~Np~~C~C~ 112 (209)
+.+++++|++.....
T Consensus 116 ~~L~l~~N~i~~~~~ 130 (176)
T 1a9n_A 116 TYLCILRNPVTNKKH 130 (176)
T ss_dssp CEEECCSSGGGGSTT
T ss_pred CEEEecCCCCCCcHh
Confidence 999999999875543
No 55
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.08 E-value=1.6e-10 Score=95.56 Aligned_cols=96 Identities=17% Similarity=0.190 Sum_probs=80.8
Q ss_pred CCCCCCcccccCCcccccceeccccccccccccccCchhhcCCcccceecccccccc-cccCccccCCCCCcC-EEeccC
Q psy14513 4 KQNSGSRQDISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKL-TFIHPYSFNNDWSLK-EFYINN 81 (209)
Q Consensus 4 ~~~~~~~~~~~~~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l-~~i~~~~f~~l~~L~-~L~Ls~ 81 (209)
++.+.-|.+++. +++.|.+ ++|+|+.+++++|.++++|++|+|++| .+ +.+++++|.++++++ .+.++.
T Consensus 19 ~~Lt~iP~~l~~----~l~~L~L----s~N~i~~i~~~~f~~l~~L~~L~Ls~N-~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 19 SKVTEIPSDLPR----NAIELRF----VLTKLRVIQKGAFSGFGDLEKIEISQN-DVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TTCCSCCTTCCT----TCSEEEE----ESCCCSEECTTSSTTCTTCCEEEEECC-TTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CCCCccCcCcCC----CCCEEEc----cCCcCCCcCHHHHcCCCCCCEEECcCC-CCCCccChhHhhcchhhhhhhcccC
Confidence 445666666654 4556888 999999999999999999999999999 76 668889999998876 467778
Q ss_pred CcCcccCCCC-CCCCCccEEEeeCCCCc
Q psy14513 82 NAITSLPHEL-GDWDSLEVLDIQSNPWT 108 (209)
Q Consensus 82 N~l~~l~~~~-~~l~~L~~l~l~~Np~~ 108 (209)
|+++.++++. ..+++|+++++++|.+.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~ 117 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIK 117 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCS
T ss_pred CcccccCchhhhhccccccccccccccc
Confidence 9999998877 89999999999999775
No 56
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.07 E-value=2.5e-10 Score=98.80 Aligned_cols=97 Identities=13% Similarity=0.222 Sum_probs=76.2
Q ss_pred CCCCCCCCcccccCCcccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccC
Q psy14513 2 TSKQNSGSRQDISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINN 81 (209)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~ 81 (209)
+..+....|..++ .++..|++ ++|.++.+++..|.++++|++|++++| .++.+.+..|.++++|++|++++
T Consensus 8 s~n~l~~ip~~~~----~~L~~L~L----s~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 8 SKNGLIHVPKDLS----QKTTILNI----SQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp TTSCCSSCCCSCC----TTCSEEEC----CSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCS
T ss_pred CCCCccccccccc----ccccEEEC----CCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCC
Confidence 3444455555444 45666777 889999998888999999999999999 89888888888888899999998
Q ss_pred CcCcccCCCCCCCCCccEEEeeCCCCcc
Q psy14513 82 NAITSLPHELGDWDSLEVLDIQSNPWTC 109 (209)
Q Consensus 82 N~l~~l~~~~~~l~~L~~l~l~~Np~~C 109 (209)
|+++.+|.. .+++|++|++++|.+..
T Consensus 79 N~l~~lp~~--~l~~L~~L~L~~N~l~~ 104 (520)
T 2z7x_B 79 NKLVKISCH--PTVNLKHLDLSFNAFDA 104 (520)
T ss_dssp SCCCEEECC--CCCCCSEEECCSSCCSS
T ss_pred CceeecCcc--ccCCccEEeccCCcccc
Confidence 888888766 67777788887777654
No 57
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.07 E-value=3.8e-10 Score=96.70 Aligned_cols=81 Identities=22% Similarity=0.379 Sum_probs=52.0
Q ss_pred ceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEE
Q psy14513 22 MKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVL 100 (209)
Q Consensus 22 ~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l 100 (209)
..|.+ ++|.|+.+++..|.++++|++|+|++| .++.+.+.+|.++++|++|+|++|+++.++... ..+++|+.|
T Consensus 35 ~~L~L----~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 109 (477)
T 2id5_A 35 RLLDL----GKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL 109 (477)
T ss_dssp SEEEC----CSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEE
T ss_pred cEEEC----CCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEE
Confidence 34555 666666666666666666666666666 666666666666666666666666666666554 556666666
Q ss_pred EeeCCCC
Q psy14513 101 DIQSNPW 107 (209)
Q Consensus 101 ~l~~Np~ 107 (209)
++++|.+
T Consensus 110 ~Ls~n~i 116 (477)
T 2id5_A 110 DISENKI 116 (477)
T ss_dssp ECTTSCC
T ss_pred ECCCCcc
Confidence 6666554
No 58
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.06 E-value=4.6e-10 Score=89.50 Aligned_cols=77 Identities=21% Similarity=0.263 Sum_probs=43.8
Q ss_pred ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCCCCc
Q psy14513 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSNPWT 108 (209)
Q Consensus 31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np~~ 108 (209)
++|.++.+++.+|.++++|++|++++| .++.+++..|.++++|+.|++++|.++.++... ..+++|++|++++|.+.
T Consensus 60 ~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 137 (276)
T 2z62_A 60 SRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137 (276)
T ss_dssp TTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCC
T ss_pred CCCcCCccCHHHccCCcCCCEEECCCC-ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccc
Confidence 455555555555555555555555555 555555555555555555555555555554433 55666666666666654
No 59
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.06 E-value=1.3e-10 Score=100.44 Aligned_cols=82 Identities=22% Similarity=0.364 Sum_probs=62.7
Q ss_pred ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccEEEeeCCCCccc
Q psy14513 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWTCD 110 (209)
Q Consensus 31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~l~~Np~~C~ 110 (209)
++|.|+.+++.. .+++|+.|+|++| .++.+++. |..+++|+.|++++|.++++|..+..+++|+.+++++|++.|+
T Consensus 177 s~N~l~~~~~~~--~l~~L~~L~Ls~N-~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~ 252 (487)
T 3oja_A 177 QYNFIYDVKGQV--VFAKLKTLDLSSN-KLAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCG 252 (487)
T ss_dssp TTSCCCEEECCC--CCTTCCEEECCSS-CCCEECGG-GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHH
T ss_pred CCCccccccccc--cCCCCCEEECCCC-CCCCCCHh-HcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCc
Confidence 555555554322 3667777777777 77777776 6667889999999999999888778889999999999999998
Q ss_pred cCcHhH
Q psy14513 111 CSIQWL 116 (209)
Q Consensus 111 C~~~~~ 116 (209)
|...|+
T Consensus 253 ~~~~~~ 258 (487)
T 3oja_A 253 TLRDFF 258 (487)
T ss_dssp HHHHHH
T ss_pred chHHHH
Confidence 754443
No 60
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.06 E-value=1.5e-10 Score=90.49 Aligned_cols=83 Identities=22% Similarity=0.313 Sum_probs=49.7
Q ss_pred cceeccccccccccccccCchhhcCCcccceeccccccc-ccccCccccCCCCCcCEEeccC-CcCcccCCCC-CCCCCc
Q psy14513 21 IMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPK-LTFIHPYSFNNDWSLKEFYINN-NAITSLPHEL-GDWDSL 97 (209)
Q Consensus 21 l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~-l~~i~~~~f~~l~~L~~L~Ls~-N~l~~l~~~~-~~l~~L 97 (209)
+..|.+ ++|.++.+++..|.++++|++|++++| . ++.+++.+|.++++|++|++++ |+++.++... ..+++|
T Consensus 33 l~~L~l----~~n~l~~i~~~~~~~l~~L~~L~l~~n-~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L 107 (239)
T 2xwt_C 33 TQTLKL----IETHLRTIPSHAFSNLPNISRIYVSID-VTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLL 107 (239)
T ss_dssp CCEEEE----ESCCCSEECTTTTTTCTTCCEEEEECC-SSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTC
T ss_pred ccEEEE----eCCcceEECHHHccCCCCCcEEeCCCC-CCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCC
Confidence 344555 566666666666666666666666666 5 6666666666666666666665 6666655544 555666
Q ss_pred cEEEeeCCCCc
Q psy14513 98 EVLDIQSNPWT 108 (209)
Q Consensus 98 ~~l~l~~Np~~ 108 (209)
+.|++++|.+.
T Consensus 108 ~~L~l~~n~l~ 118 (239)
T 2xwt_C 108 KFLGIFNTGLK 118 (239)
T ss_dssp CEEEEEEECCC
T ss_pred CEEeCCCCCCc
Confidence 66666655543
No 61
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.04 E-value=4.9e-10 Score=83.43 Aligned_cols=79 Identities=23% Similarity=0.307 Sum_probs=71.8
Q ss_pred eeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEE
Q psy14513 23 KVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLD 101 (209)
Q Consensus 23 ~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~ 101 (209)
.+.. ++|.++.++...+ ++|++|+|++| .++.+++..|.++++|++|+|++|+++.+++.. ..+++|++|+
T Consensus 13 ~l~~----s~n~l~~ip~~~~---~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 84 (170)
T 3g39_A 13 TVDC----SGKSLASVPTGIP---TTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLS 84 (170)
T ss_dssp EEEC----TTSCCSSCCSCCC---TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred EEEe----CCCCcCccCccCC---CCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEE
Confidence 3556 8999999997653 78999999999 999999999999999999999999999999887 8999999999
Q ss_pred eeCCCCcc
Q psy14513 102 IQSNPWTC 109 (209)
Q Consensus 102 l~~Np~~C 109 (209)
+++|.+.-
T Consensus 85 L~~N~l~~ 92 (170)
T 3g39_A 85 LNDNQLKS 92 (170)
T ss_dssp CCSSCCCC
T ss_pred CCCCccCE
Confidence 99999874
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.03 E-value=1.2e-09 Score=87.41 Aligned_cols=76 Identities=26% Similarity=0.356 Sum_probs=37.0
Q ss_pred cccc-ccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCCCC
Q psy14513 31 ANSE-LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSNPW 107 (209)
Q Consensus 31 s~n~-l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np~ 107 (209)
++|. +..+++..|.++++|++|++++| .++.+.+..|..+++|++|++++|+++.++... ..+++|+.|++++|.+
T Consensus 88 ~~n~~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 165 (285)
T 1ozn_A 88 SDNAQLRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 165 (285)
T ss_dssp CSCTTCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCCccccCHHHhcCCcCCCEEECCCC-cCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcc
Confidence 4443 44444444555555555555555 555544444444445555555555554444433 4444455555544443
No 63
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.03 E-value=5.8e-10 Score=83.44 Aligned_cols=75 Identities=25% Similarity=0.403 Sum_probs=69.5
Q ss_pred ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCCCCcc
Q psy14513 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSNPWTC 109 (209)
Q Consensus 31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np~~C 109 (209)
++|.+..+|...+ ++|+.|+|++| .++.+++..|.++++|++|+|++|+++.+|... ..+++|+.|++++|.+.-
T Consensus 20 ~~n~l~~iP~~~~---~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~ 95 (174)
T 2r9u_A 20 QNIRLASVPAGIP---TDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95 (174)
T ss_dssp CSSCCSSCCSCCC---TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCCCCccCCCcC---CCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccce
Confidence 8999999987653 78999999999 999999999999999999999999999999887 899999999999998873
No 64
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.03 E-value=5.2e-10 Score=101.19 Aligned_cols=98 Identities=29% Similarity=0.415 Sum_probs=78.0
Q ss_pred CCCCCCcccccCCcccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCc
Q psy14513 4 KQNSGSRQDISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNA 83 (209)
Q Consensus 4 ~~~~~~~~~~~~~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~ 83 (209)
++....|..+. ...+|..|.+ ++|.|+.++ ..|.+|++|+.|+|++| .|+.+ |..|..+.+|++|+|++|.
T Consensus 234 n~l~~l~~~~~--~l~~L~~L~L----s~N~l~~lp-~~~~~l~~L~~L~Ls~N-~l~~l-p~~~~~l~~L~~L~L~~N~ 304 (727)
T 4b8c_D 234 LQIFNISANIF--KYDFLTRLYL----NGNSLTELP-AEIKNLSNLRVLDLSHN-RLTSL-PAELGSCFQLKYFYFFDNM 304 (727)
T ss_dssp SCCSCCCGGGG--GCCSCSCCBC----TTSCCSCCC-GGGGGGTTCCEEECTTS-CCSSC-CSSGGGGTTCSEEECCSSC
T ss_pred CCCCCCChhhc--CCCCCCEEEe----eCCcCcccC-hhhhCCCCCCEEeCcCC-cCCcc-ChhhcCCCCCCEEECCCCC
Confidence 33444444443 2233455555 899999776 56889999999999999 99988 5557779999999999999
Q ss_pred CcccCCCCCCCCCccEEEeeCCCCccc
Q psy14513 84 ITSLPHELGDWDSLEVLDIQSNPWTCD 110 (209)
Q Consensus 84 l~~l~~~~~~l~~L~~l~l~~Np~~C~ 110 (209)
++.+|..+..+++|+.|+|++|++...
T Consensus 305 l~~lp~~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 305 VTTLPWEFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp CCCCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred CCccChhhhcCCCccEEeCCCCccCCC
Confidence 999998888999999999999999753
No 65
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.02 E-value=6.5e-10 Score=97.85 Aligned_cols=95 Identities=16% Similarity=0.188 Sum_probs=62.7
Q ss_pred CCCCcccccCCcccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCc
Q psy14513 6 NSGSRQDISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAIT 85 (209)
Q Consensus 6 ~~~~~~~~~~~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~ 85 (209)
....|..++.. +..|++ ++|.|+.+++.+|.++++|++|++++| .+..+.+.+|.++++|++|++++|+++
T Consensus 24 l~~iP~~l~~~----l~~L~L----s~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~ 94 (606)
T 3t6q_A 24 LNEIPGTLPNS----TECLEF----SFNVLPTIQNTTFSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTANPLI 94 (606)
T ss_dssp CSSCCTTSCTT----CCEEEC----TTCCCSEECTTTSTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCS
T ss_pred cccCcCCCCCc----CcEEEc----cCCccCcCChhHhccCccceEEECCCC-ccceeChhhccCccccCeeeCCCCccc
Confidence 34455555543 344666 777777777777777777777777777 777777777777777777777777776
Q ss_pred ccCCCC-CCCCCccEEEeeCCCCcc
Q psy14513 86 SLPHEL-GDWDSLEVLDIQSNPWTC 109 (209)
Q Consensus 86 ~l~~~~-~~l~~L~~l~l~~Np~~C 109 (209)
.+++.. ..+++|++|++++|.+..
T Consensus 95 ~~~~~~~~~l~~L~~L~L~~n~i~~ 119 (606)
T 3t6q_A 95 FMAETALSGPKALKHLFFIQTGISS 119 (606)
T ss_dssp EECTTTTSSCTTCCEEECTTSCCSC
T ss_pred ccChhhhcccccccEeeccccCccc
Confidence 654433 666666666666665543
No 66
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.01 E-value=8.6e-10 Score=97.07 Aligned_cols=76 Identities=20% Similarity=0.215 Sum_probs=40.6
Q ss_pred ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCC-CCCCCCccEEEeeCCCC
Q psy14513 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGDWDSLEVLDIQSNPW 107 (209)
Q Consensus 31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~l~l~~Np~ 107 (209)
++|.++.+++..|.++++|++|++++| .++.+.+.+|.++.+|++|++++|+++.+++. +..+++|++|++++|.+
T Consensus 40 s~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l 116 (606)
T 3vq2_A 40 SFNPLKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 116 (606)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCC
T ss_pred CCCCcCEeChhhccCCccCcEEeCCCC-cccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcc
Confidence 555555555555555555555555555 55555555555555555555555555554322 24555555555555443
No 67
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.01 E-value=4.8e-10 Score=97.47 Aligned_cols=84 Identities=23% Similarity=0.357 Sum_probs=49.5
Q ss_pred ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCcc
Q psy14513 20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLE 98 (209)
Q Consensus 20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~ 98 (209)
+++.|++ ++|.++.+++..|.++++|++|++++| .++.+++.+|.++++|++|++++|+++.+++.. ..+++|+
T Consensus 27 ~L~~L~L----s~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 101 (549)
T 2z81_A 27 AMKSLDL----SFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLK 101 (549)
T ss_dssp TCCEEEC----CSSCCCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCC
T ss_pred CccEEEC----cCCccCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCc
Confidence 4444555 666666666666666666666666666 666666666666666666666666665555443 5555555
Q ss_pred EEEeeCCCCc
Q psy14513 99 VLDIQSNPWT 108 (209)
Q Consensus 99 ~l~l~~Np~~ 108 (209)
+|++++|.+.
T Consensus 102 ~L~Ls~n~l~ 111 (549)
T 2z81_A 102 YLNLMGNPYQ 111 (549)
T ss_dssp EEECTTCCCS
T ss_pred EEECCCCccc
Confidence 5555555443
No 68
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.97 E-value=8.2e-10 Score=86.25 Aligned_cols=91 Identities=21% Similarity=0.241 Sum_probs=67.3
Q ss_pred cccCCcccccceecccccccccc-ccccCchhhcCCcccceecccc-cccccccCccccCCCCCcCEEeccCCcCcccCC
Q psy14513 12 DISYDTQYTIMKVQLPYSTANSE-LYAIRKNTFKNLLNLQTLYCNF-NPKLTFIHPYSFNNDWSLKEFYINNNAITSLPH 89 (209)
Q Consensus 12 ~~~~~~~~~l~~L~ll~~~s~n~-l~~l~~~~f~~l~~L~~L~Ls~-n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~ 89 (209)
.++...+.++..|..+ ++++|. ++.+++.+|.++++|++|++++ | .++.+++.+|.++++|+.|++++|+++.+|.
T Consensus 45 ~i~~~~~~~l~~L~~L-~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n-~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~ 122 (239)
T 2xwt_C 45 TIPSHAFSNLPNISRI-YVSIDVTLQQLESHSFYNLSKVTHIEIRNTR-NLTYIDPDALKELPLLKFLGIFNTGLKMFPD 122 (239)
T ss_dssp EECTTTTTTCTTCCEE-EEECCSSCCEECTTTEESCTTCCEEEEEEET-TCCEECTTSEECCTTCCEEEEEEECCCSCCC
T ss_pred EECHHHccCCCCCcEE-eCCCCCCcceeCHhHcCCCcCCcEEECCCCC-CeeEcCHHHhCCCCCCCEEeCCCCCCccccc
Confidence 4444444444333332 226775 8888888888899999999988 8 8888888888888888888888888888775
Q ss_pred CCCCCCCcc---EEEeeCC
Q psy14513 90 ELGDWDSLE---VLDIQSN 105 (209)
Q Consensus 90 ~~~~l~~L~---~l~l~~N 105 (209)
+..+++|+ .+++++|
T Consensus 123 -~~~l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 123 -LTKVYSTDIFFILEITDN 140 (239)
T ss_dssp -CTTCCBCCSEEEEEEESC
T ss_pred -cccccccccccEEECCCC
Confidence 55556665 8888887
No 69
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.97 E-value=1.5e-09 Score=94.57 Aligned_cols=75 Identities=19% Similarity=0.161 Sum_probs=40.0
Q ss_pred ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCCC
Q psy14513 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSNP 106 (209)
Q Consensus 31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np 106 (209)
++|.++.+++.+|.++++|++|++++| .++.+++.+|.++++|++|++++|+++.+++.. ..+++|++|++++|.
T Consensus 36 s~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 111 (570)
T 2z63_A 36 SFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 111 (570)
T ss_dssp CSCCCCEECTTTTTTCSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred cCCccCccChhHhhCCCCceEEECCCC-cCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccc
Confidence 555555555555555555555555555 555555555555555555555555555544332 444444444444443
No 70
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.96 E-value=8.2e-10 Score=90.88 Aligned_cols=76 Identities=14% Similarity=0.165 Sum_probs=70.6
Q ss_pred ccc-cccccCchhhcCCcccceecccc-cccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCCCC
Q psy14513 31 ANS-ELYAIRKNTFKNLLNLQTLYCNF-NPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSNPW 107 (209)
Q Consensus 31 s~n-~l~~l~~~~f~~l~~L~~L~Ls~-n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np~ 107 (209)
+++ .|+.+|. +..+++|++|+|++ | .++.+++..|.++.+|+.|+|++|+|+++++.. ..+++|+.|+|++|.+
T Consensus 16 ~~~n~l~~ip~--l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 16 TRDGALDSLHH--LPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp CSSCCCTTTTT--SCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred CCCCCCCccCC--CCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence 666 8999987 89999999999996 9 999999999999999999999999999998877 8999999999999998
Q ss_pred cc
Q psy14513 108 TC 109 (209)
Q Consensus 108 ~C 109 (209)
.-
T Consensus 93 ~~ 94 (347)
T 2ifg_A 93 ES 94 (347)
T ss_dssp SC
T ss_pred ce
Confidence 63
No 71
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.96 E-value=1.5e-09 Score=90.61 Aligned_cols=76 Identities=24% Similarity=0.405 Sum_probs=39.9
Q ss_pred ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCCCC
Q psy14513 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSNPW 107 (209)
Q Consensus 31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np~ 107 (209)
++|.+..+++..|.++++|++|++++| .++.+++..|.++++|++|++++|+++.+|... ..+++|++|++++|.+
T Consensus 77 ~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l 153 (390)
T 3o6n_A 77 NDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 153 (390)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCcc
Confidence 455555555555555555555555555 555555555555555555555555555555444 4455555555555544
No 72
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.96 E-value=2.5e-09 Score=87.53 Aligned_cols=82 Identities=30% Similarity=0.435 Sum_probs=60.1
Q ss_pred cccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCcc
Q psy14513 19 YTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLE 98 (209)
Q Consensus 19 ~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~ 98 (209)
.+++.|.+ ++|.+..+++..|.++++|++|++++| .++.+.+.+|.++++|++|++++|+++.+|.... ++|+
T Consensus 54 ~~l~~L~l----~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~ 126 (332)
T 2ft3_A 54 PDTTLLDL----QNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLV 126 (332)
T ss_dssp TTCCEEEC----CSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCC
T ss_pred CCCeEEEC----CCCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCC
Confidence 34555666 788888888888888888888888888 8888888888888888888888888777765442 4455
Q ss_pred EEEeeCCCC
Q psy14513 99 VLDIQSNPW 107 (209)
Q Consensus 99 ~l~l~~Np~ 107 (209)
+|++++|.+
T Consensus 127 ~L~l~~n~i 135 (332)
T 2ft3_A 127 ELRIHDNRI 135 (332)
T ss_dssp EEECCSSCC
T ss_pred EEECCCCcc
Confidence 555555443
No 73
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.95 E-value=2.5e-09 Score=89.33 Aligned_cols=85 Identities=24% Similarity=0.268 Sum_probs=75.1
Q ss_pred ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCcc
Q psy14513 20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLE 98 (209)
Q Consensus 20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~ 98 (209)
++..|.+ ++|.+..+++..|.++++|++|++++| .++.+++..|..+++|++|++++|+++.+++.. ..+++|+
T Consensus 94 ~L~~L~L----~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 168 (390)
T 3o6n_A 94 TIQKLYM----GFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 168 (390)
T ss_dssp TCCEEEC----CSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCC
T ss_pred CcCEEEC----CCCCCCcCCHHHhcCCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCC
Confidence 3444555 899999999999999999999999999 999999999998999999999999999987765 8899999
Q ss_pred EEEeeCCCCcc
Q psy14513 99 VLDIQSNPWTC 109 (209)
Q Consensus 99 ~l~l~~Np~~C 109 (209)
.|++++|.+..
T Consensus 169 ~L~l~~n~l~~ 179 (390)
T 3o6n_A 169 NLQLSSNRLTH 179 (390)
T ss_dssp EEECCSSCCSB
T ss_pred EEECCCCcCCc
Confidence 99999998764
No 74
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.95 E-value=1.3e-09 Score=96.01 Aligned_cols=85 Identities=21% Similarity=0.242 Sum_probs=62.3
Q ss_pred ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCccc--CCCCCCCCCc
Q psy14513 20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSL--PHELGDWDSL 97 (209)
Q Consensus 20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l--~~~~~~l~~L 97 (209)
+|..|.+ ++|.|+.+|. .|.++++|+.|+|++| .++.++ .|..+++|+.|+|++|+++++ |..+..+++|
T Consensus 464 ~L~~L~L----s~N~l~~lp~-~~~~l~~L~~L~Ls~N-~l~~lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L 535 (567)
T 1dce_A 464 LVTHLDL----SHNRLRALPP-ALAALRCLEVLQASDN-ALENVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL 535 (567)
T ss_dssp TCCEEEC----CSSCCCCCCG-GGGGCTTCCEEECCSS-CCCCCG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTC
T ss_pred cCcEeec----Ccccccccch-hhhcCCCCCEEECCCC-CCCCCc--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCC
Confidence 3444555 7788887654 6777888888888888 888765 566778888888888888877 4445778888
Q ss_pred cEEEeeCCCCccccC
Q psy14513 98 EVLDIQSNPWTCDCS 112 (209)
Q Consensus 98 ~~l~l~~Np~~C~C~ 112 (209)
+.|++++|++....+
T Consensus 536 ~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 536 VLLNLQGNSLCQEEG 550 (567)
T ss_dssp CEEECTTSGGGGSSS
T ss_pred CEEEecCCcCCCCcc
Confidence 888888888766544
No 75
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.94 E-value=3.6e-09 Score=86.43 Aligned_cols=82 Identities=30% Similarity=0.471 Sum_probs=68.3
Q ss_pred ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccE
Q psy14513 20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEV 99 (209)
Q Consensus 20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~ 99 (209)
.+..|.+ ++|.++.+++..|.++++|++|++++| .++.+.+..|..+++|++|++++|.++.+|.... ++|+.
T Consensus 53 ~l~~L~L----~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~ 125 (330)
T 1xku_A 53 DTALLDL----QNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQE 125 (330)
T ss_dssp TCCEEEC----CSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCE
T ss_pred CCeEEEC----CCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccE
Confidence 4455777 899999999999999999999999999 9999999999999999999999999998876553 46666
Q ss_pred EEeeCCCCc
Q psy14513 100 LDIQSNPWT 108 (209)
Q Consensus 100 l~l~~Np~~ 108 (209)
|++++|.+.
T Consensus 126 L~l~~n~l~ 134 (330)
T 1xku_A 126 LRVHENEIT 134 (330)
T ss_dssp EECCSSCCC
T ss_pred EECCCCccc
Confidence 666666554
No 76
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.94 E-value=6.8e-10 Score=82.08 Aligned_cols=76 Identities=17% Similarity=0.157 Sum_probs=50.2
Q ss_pred ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccC--CCCCCCCCccEEEeeCCCCc
Q psy14513 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLP--HELGDWDSLEVLDIQSNPWT 108 (209)
Q Consensus 31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~--~~~~~l~~L~~l~l~~Np~~ 108 (209)
++|.++.+ ..|..+++|++|++++| .+....+..+..+++|++|++++|.++.++ ..+..+++|+.|++++|++.
T Consensus 57 ~~n~l~~~--~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~ 133 (168)
T 2ell_A 57 INVGLISV--SNLPKLPKLKKLELSEN-RIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133 (168)
T ss_dssp ESSCCCCC--SSCCCCSSCCEEEEESC-CCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG
T ss_pred cCCCCCCh--hhhccCCCCCEEECcCC-cCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCc
Confidence 66667666 56666777777777777 666655555555667777777777777665 23366677777777777665
Q ss_pred c
Q psy14513 109 C 109 (209)
Q Consensus 109 C 109 (209)
-
T Consensus 134 ~ 134 (168)
T 2ell_A 134 N 134 (168)
T ss_dssp T
T ss_pred c
Confidence 3
No 77
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.93 E-value=2.4e-09 Score=90.91 Aligned_cols=84 Identities=25% Similarity=0.277 Sum_probs=63.2
Q ss_pred cceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCC-CCCCCCccE
Q psy14513 21 IMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGDWDSLEV 99 (209)
Q Consensus 21 l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~ 99 (209)
+..|.+ ++|.+..+++..|.++++|++|++++| .++.+.+..|.++++|+.|++++|+++.+++. +..+++|++
T Consensus 301 L~~L~L----s~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 375 (455)
T 3v47_A 301 LEQLTL----AQNEINKIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKE 375 (455)
T ss_dssp CCEEEC----TTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred CCEEEC----CCCcccccChhHhcCcccCCEEECCCC-ccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccE
Confidence 444555 778888877777878888888888888 78777777777778888888888888776444 377788888
Q ss_pred EEeeCCCCcc
Q psy14513 100 LDIQSNPWTC 109 (209)
Q Consensus 100 l~l~~Np~~C 109 (209)
|++++|.+..
T Consensus 376 L~L~~N~l~~ 385 (455)
T 3v47_A 376 LALDTNQLKS 385 (455)
T ss_dssp EECCSSCCSC
T ss_pred EECCCCcccc
Confidence 8888887764
No 78
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.93 E-value=5.4e-10 Score=81.00 Aligned_cols=75 Identities=21% Similarity=0.181 Sum_probs=36.0
Q ss_pred ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccC--CCCCCCCCccEEEeeCCCCc
Q psy14513 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLP--HELGDWDSLEVLDIQSNPWT 108 (209)
Q Consensus 31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~--~~~~~l~~L~~l~l~~Np~~ 108 (209)
++|.++.+ ..|.++++|++|++++| .++...+..+..+++|++|++++|+++.++ ..+..+++|+.+++++|++.
T Consensus 50 ~~n~l~~~--~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 50 INVGLTSI--ANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp TTSCCCCC--TTCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred cCCCCCCc--hhhhcCCCCCEEECCCC-cccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence 44555544 34444555555555555 554433444433445555555555555433 22244555555555555443
No 79
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.91 E-value=3.7e-09 Score=93.38 Aligned_cols=77 Identities=22% Similarity=0.251 Sum_probs=39.8
Q ss_pred ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCCCCc
Q psy14513 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSNPWT 108 (209)
Q Consensus 31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np~~ 108 (209)
++|.++.+++..|.++++|++|+|++| .++.+++..|..+++|++|++++|.++.+++.. ..+++|+.|++++|.+.
T Consensus 107 ~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 184 (597)
T 3oja_B 107 GFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 184 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS
T ss_pred CCCcCCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC
Confidence 445555555555555555555555555 555555555555555555555555555544433 44555555555555443
No 80
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.90 E-value=2.6e-09 Score=95.27 Aligned_cols=77 Identities=18% Similarity=0.209 Sum_probs=43.8
Q ss_pred ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCCCCc
Q psy14513 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSNPWT 108 (209)
Q Consensus 31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np~~ 108 (209)
++|.++.+++++|.++++|++|++++| .++.+++.+|.++++|++|++++|+++.+++.. ..+++|++|++++|.+.
T Consensus 57 s~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 134 (680)
T 1ziw_A 57 GFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 134 (680)
T ss_dssp CSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCS
T ss_pred CCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCccc
Confidence 455555555555555555555555555 555555555555555666666666665555433 55566666666666543
No 81
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.89 E-value=3.3e-09 Score=93.69 Aligned_cols=85 Identities=22% Similarity=0.375 Sum_probs=72.1
Q ss_pred ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCcc
Q psy14513 20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLE 98 (209)
Q Consensus 20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~ 98 (209)
++..|.+ ++|.|..+++..|.++++|+.|+|++| .+..+++..|.++++|++|+|++|.++.+|... ..+++|+
T Consensus 76 ~L~~L~L----~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 150 (597)
T 3oja_B 76 QVELLNL----NDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 150 (597)
T ss_dssp CCSEEEC----TTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCcEEEC----CCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCC
Confidence 3444555 788899988888899999999999999 899998888888889999999999999888877 8889999
Q ss_pred EEEeeCCCCcc
Q psy14513 99 VLDIQSNPWTC 109 (209)
Q Consensus 99 ~l~l~~Np~~C 109 (209)
+|++++|.+..
T Consensus 151 ~L~Ls~N~l~~ 161 (597)
T 3oja_B 151 TLSMSNNNLER 161 (597)
T ss_dssp EEECCSSCCCB
T ss_pred EEEeeCCcCCC
Confidence 99999987754
No 82
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.86 E-value=1.5e-09 Score=98.66 Aligned_cols=88 Identities=14% Similarity=0.180 Sum_probs=77.8
Q ss_pred cceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcc-cCCCCCCCCCccE
Q psy14513 21 IMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITS-LPHELGDWDSLEV 99 (209)
Q Consensus 21 l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~ 99 (209)
+..|++ ++|.+++..+..|.+++.|+.|+|++| .+++..|..|.++.+|+.|||++|++++ +|..+..+++|++
T Consensus 634 L~~LdL----s~N~l~g~ip~~l~~l~~L~~L~Ls~N-~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 708 (768)
T 3rgz_A 634 MMFLDM----SYNMLSGYIPKEIGSMPYLFILNLGHN-DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE 708 (768)
T ss_dssp CCEEEC----CSSCCBSCCCGGGGGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSE
T ss_pred ccEEEC----cCCcccccCCHHHhccccCCEEeCcCC-ccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCE
Confidence 344555 999999999999999999999999999 9999889999999999999999999997 6666699999999
Q ss_pred EEeeCCCCccccCc
Q psy14513 100 LDIQSNPWTCDCSI 113 (209)
Q Consensus 100 l~l~~Np~~C~C~~ 113 (209)
+++++|++.+.-+.
T Consensus 709 L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 709 IDLSNNNLSGPIPE 722 (768)
T ss_dssp EECCSSEEEEECCS
T ss_pred EECcCCcccccCCC
Confidence 99999999876553
No 83
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.84 E-value=1.9e-09 Score=79.60 Aligned_cols=84 Identities=21% Similarity=0.152 Sum_probs=72.7
Q ss_pred ccceeccccccccccccccCchhhcCCcccceecccccccccccCc-cccCCCCCcCEEeccCCcCcccCC---CC-CCC
Q psy14513 20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHP-YSFNNDWSLKEFYINNNAITSLPH---EL-GDW 94 (209)
Q Consensus 20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~-~~f~~l~~L~~L~Ls~N~l~~l~~---~~-~~l 94 (209)
++..|.+ ++|.+....+..+.++++|++|++++| .++.++. ..+..+++|+.|++++|.++.++. .. ..+
T Consensus 72 ~L~~L~L----s~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l 146 (168)
T 2ell_A 72 KLKKLEL----SENRIFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLL 146 (168)
T ss_dssp SCCEEEE----ESCCCCSCCCHHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTC
T ss_pred CCCEEEC----cCCcCchHHHHHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhC
Confidence 3445555 899999977788888999999999999 9999865 778889999999999999999987 34 889
Q ss_pred CCccEEEeeCCCCc
Q psy14513 95 DSLEVLDIQSNPWT 108 (209)
Q Consensus 95 ~~L~~l~l~~Np~~ 108 (209)
++|+.+++++|+..
T Consensus 147 ~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 147 PQLTYLDGYDREDQ 160 (168)
T ss_dssp SSCCEETTEETTSC
T ss_pred ccCcEecCCCCChh
Confidence 99999999998764
No 84
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.84 E-value=5.7e-09 Score=84.28 Aligned_cols=78 Identities=18% Similarity=0.214 Sum_probs=47.3
Q ss_pred ccccccccCchhhcCCcccceecccccccccc-cCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCCCCc
Q psy14513 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTF-IHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSNPWT 108 (209)
Q Consensus 31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~-i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np~~ 108 (209)
++|.+..+.+..|.++++|++|++++| .+.. +.+..|..+++|+.|++++|+++.+++.. ..+++|+.|++++|.+.
T Consensus 134 ~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 212 (306)
T 2z66_A 134 SHTHTRVAFNGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 212 (306)
T ss_dssp TTSCCEECSTTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred CCCcCCccchhhcccCcCCCEEECCCC-ccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccC
Confidence 566666666666666666666666666 5554 44555555666666666666666654433 56666666666666654
Q ss_pred c
Q psy14513 109 C 109 (209)
Q Consensus 109 C 109 (209)
.
T Consensus 213 ~ 213 (306)
T 2z66_A 213 S 213 (306)
T ss_dssp B
T ss_pred c
Confidence 3
No 85
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.83 E-value=8.6e-09 Score=81.97 Aligned_cols=82 Identities=22% Similarity=0.222 Sum_probs=61.2
Q ss_pred cccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCcc
Q psy14513 19 YTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLE 98 (209)
Q Consensus 19 ~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~ 98 (209)
.++..|.+ ++|.++.++ .|..+++|+.|++++| .++.++ .+..+++|+.|++++|+++.+ ..+..+++|+
T Consensus 106 ~~L~~L~L----~~N~l~~~~--~l~~l~~L~~L~Ls~N-~i~~~~--~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~ 175 (263)
T 1xeu_A 106 ACLSRLFL----DNNELRDTD--SLIHLKNLEILSIRNN-KLKSIV--MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVN 175 (263)
T ss_dssp SSCCEEEC----CSSCCSBSG--GGTTCTTCCEEECTTS-CCCBCG--GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCC
T ss_pred CcccEEEc----cCCccCCCh--hhcCcccccEEECCCC-cCCCCh--HHccCCCCCEEECCCCcCcch-HHhccCCCCC
Confidence 44555555 777777764 4777888888888888 888774 466678888888888888877 3447788888
Q ss_pred EEEeeCCCCccc
Q psy14513 99 VLDIQSNPWTCD 110 (209)
Q Consensus 99 ~l~l~~Np~~C~ 110 (209)
.+++++|++.|.
T Consensus 176 ~L~l~~N~~~~~ 187 (263)
T 1xeu_A 176 WIDLTGQKCVNE 187 (263)
T ss_dssp EEEEEEEEEECC
T ss_pred EEeCCCCcccCC
Confidence 888888888775
No 86
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.83 E-value=9.8e-10 Score=82.01 Aligned_cols=84 Identities=20% Similarity=0.171 Sum_probs=73.0
Q ss_pred ccceeccccccccccccccCchhhcCCcccceecccccccccccCc-cccCCCCCcCEEeccCCcCcccCCC----CCCC
Q psy14513 20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHP-YSFNNDWSLKEFYINNNAITSLPHE----LGDW 94 (209)
Q Consensus 20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~-~~f~~l~~L~~L~Ls~N~l~~l~~~----~~~l 94 (209)
++..|.+ ++|.|+.+++..|.++++|++|++++| .++.++. ..+..+++|+.|++++|.++.+|.. +..+
T Consensus 65 ~L~~L~L----s~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l 139 (176)
T 1a9n_A 65 RLKTLLV----NNNRICRIGEGLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKV 139 (176)
T ss_dssp SCCEEEC----CSSCCCEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHC
T ss_pred CCCEEEC----CCCcccccCcchhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHC
Confidence 3445555 899999999988999999999999999 9998876 5777899999999999999999875 4789
Q ss_pred CCccEEEeeCCCCc
Q psy14513 95 DSLEVLDIQSNPWT 108 (209)
Q Consensus 95 ~~L~~l~l~~Np~~ 108 (209)
++|+.+++++|+..
T Consensus 140 ~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 140 PQVRVLDFQKVKLK 153 (176)
T ss_dssp TTCSEETTEECCHH
T ss_pred CccceeCCCcCCHH
Confidence 99999999988754
No 87
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.79 E-value=1.9e-08 Score=89.56 Aligned_cols=75 Identities=20% Similarity=0.174 Sum_probs=42.3
Q ss_pred ccccccccCchhhcCCcccceecc------cccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccEEEeeC
Q psy14513 31 ANSELYAIRKNTFKNLLNLQTLYC------NFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQS 104 (209)
Q Consensus 31 s~n~l~~l~~~~f~~l~~L~~L~L------s~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~l~~ 104 (209)
++|.++.++ ..+.++++|+.|++ ++| .+....|..|..+++|+.|++++|+++.+|..+. ++|+.|++++
T Consensus 521 s~N~l~~ip-~~~~~l~~L~~L~Ls~N~~ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~ 596 (636)
T 4eco_A 521 SYNSFSKFP-TQPLNSSTLKGFGIRNQRDAQGN-RTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT--PNISVLDIKD 596 (636)
T ss_dssp CSSCCSSCC-CGGGGCSSCCEEECCSCBCTTCC-BCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--TTCCEEECCS
T ss_pred CCCCCCCcC-hhhhcCCCCCEEECCCCcccccC-cccccChHHHhcCCCCCEEECCCCcCCccCHhHh--CcCCEEECcC
Confidence 555555533 23344555555555 234 4444444555556666666666666666665543 5666667777
Q ss_pred CCCcc
Q psy14513 105 NPWTC 109 (209)
Q Consensus 105 Np~~C 109 (209)
||+.|
T Consensus 597 N~l~~ 601 (636)
T 4eco_A 597 NPNIS 601 (636)
T ss_dssp CTTCE
T ss_pred CCCcc
Confidence 76665
No 88
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.79 E-value=3e-09 Score=76.98 Aligned_cols=84 Identities=18% Similarity=0.135 Sum_probs=70.3
Q ss_pred ccccceecccccccccccc--ccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcc-cCCCCCCC
Q psy14513 18 QYTIMKVQLPYSTANSELY--AIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITS-LPHELGDW 94 (209)
Q Consensus 18 ~~~l~~L~ll~~~s~n~l~--~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~-l~~~~~~l 94 (209)
..++..|.+ ++|.++ .++ ..|..+++|++|++++| .++.+ ..|..+++|++|++++|.++. +|.....+
T Consensus 16 ~~~l~~L~l----~~n~l~~~~~~-~~~~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l 87 (149)
T 2je0_A 16 PSDVKELVL----DNSRSNEGKLE-GLTDEFEELEFLSTINV-GLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKC 87 (149)
T ss_dssp GGGCSEEEC----TTCBCBTTBCC-SCCTTCTTCCEEECTTS-CCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHC
T ss_pred CccCeEEEc----cCCcCChhHHH-HHHhhcCCCcEEECcCC-CCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhC
Confidence 345667777 899998 555 57889999999999999 99988 678889999999999999998 54433679
Q ss_pred CCccEEEeeCCCCcc
Q psy14513 95 DSLEVLDIQSNPWTC 109 (209)
Q Consensus 95 ~~L~~l~l~~Np~~C 109 (209)
++|+.+++++|.+.-
T Consensus 88 ~~L~~L~ls~N~i~~ 102 (149)
T 2je0_A 88 PNLTHLNLSGNKIKD 102 (149)
T ss_dssp TTCCEEECTTSCCCS
T ss_pred CCCCEEECCCCcCCC
Confidence 999999999998764
No 89
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.79 E-value=9.5e-09 Score=84.24 Aligned_cols=86 Identities=16% Similarity=0.192 Sum_probs=64.2
Q ss_pred cccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcc-cCCCCCCCCCc
Q psy14513 19 YTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITS-LPHELGDWDSL 97 (209)
Q Consensus 19 ~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L 97 (209)
.+|..|.+ ++|.++.++. .|.++++|++|++++| .++.+++. |..+++|+.|++++|.+.. +|..+..+++|
T Consensus 183 ~~L~~L~L----~~n~l~~lp~-~l~~l~~L~~L~L~~N-~l~~l~~~-l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L 255 (328)
T 4fcg_A 183 VNLQSLRL----EWTGIRSLPA-SIANLQNLKSLKIRNS-PLSALGPA-IHHLPKLEELDLRGCTALRNYPPIFGGRAPL 255 (328)
T ss_dssp TTCCEEEE----EEECCCCCCG-GGGGCTTCCEEEEESS-CCCCCCGG-GGGCTTCCEEECTTCTTCCBCCCCTTCCCCC
T ss_pred CCCCEEEC----cCCCcCcchH-hhcCCCCCCEEEccCC-CCCcCchh-hccCCCCCEEECcCCcchhhhHHHhcCCCCC
Confidence 34455665 7888887664 4788888888888888 88887664 6668888888888877766 55555788888
Q ss_pred cEEEeeCCCCcccc
Q psy14513 98 EVLDIQSNPWTCDC 111 (209)
Q Consensus 98 ~~l~l~~Np~~C~C 111 (209)
+.|++++|++...-
T Consensus 256 ~~L~L~~n~~~~~~ 269 (328)
T 4fcg_A 256 KRLILKDCSNLLTL 269 (328)
T ss_dssp CEEECTTCTTCCBC
T ss_pred CEEECCCCCchhhc
Confidence 88888888765543
No 90
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.78 E-value=6.7e-09 Score=78.81 Aligned_cols=83 Identities=16% Similarity=0.096 Sum_probs=65.4
Q ss_pred cccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcc-cCCCCCCCCCc
Q psy14513 19 YTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITS-LPHELGDWDSL 97 (209)
Q Consensus 19 ~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L 97 (209)
.++..|.+ ++|.+..++ .|..+++|++|++++| .++...+..|..+++|++|++++|.++. .+..+..+++|
T Consensus 66 ~~L~~L~l----~~n~~~~~~--~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L 138 (197)
T 4ezg_A 66 HNIKDLTI----NNIHATNYN--PISGLSNLERLRIMGK-DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKV 138 (197)
T ss_dssp TTCSEEEE----ESCCCSCCG--GGTTCTTCCEEEEECT-TCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSC
T ss_pred CCCCEEEc----cCCCCCcch--hhhcCCCCCEEEeECC-ccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCC
Confidence 34555666 778777664 6778899999999999 8888777778888899999999999987 33334788899
Q ss_pred cEEEeeCCCCc
Q psy14513 98 EVLDIQSNPWT 108 (209)
Q Consensus 98 ~~l~l~~Np~~ 108 (209)
+.|++++|++.
T Consensus 139 ~~L~L~~n~~i 149 (197)
T 4ezg_A 139 NSIDLSYNGAI 149 (197)
T ss_dssp CEEECCSCTBC
T ss_pred CEEEccCCCCc
Confidence 99999998833
No 91
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.77 E-value=2.3e-09 Score=87.28 Aligned_cols=86 Identities=22% Similarity=0.176 Sum_probs=73.4
Q ss_pred cceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcc-cCCCCCCCCCccE
Q psy14513 21 IMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITS-LPHELGDWDSLEV 99 (209)
Q Consensus 21 l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~ 99 (209)
+..|.+ ++|.+....+..|..+++|+.|++++| .++...+. +..+++|++|++++|+++. +|..+..+++|+.
T Consensus 199 L~~L~L----s~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 272 (313)
T 1ogq_A 199 LAFVDL----SRNMLEGDASVLFGSDKNTQKIHLAKN-SLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS 272 (313)
T ss_dssp CSEEEC----CSSEEEECCGGGCCTTSCCSEEECCSS-EECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCE
T ss_pred ccEEEC----cCCcccCcCCHHHhcCCCCCEEECCCC-ceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCE
Confidence 566666 899999999999999999999999999 98876666 6668899999999999995 6655688999999
Q ss_pred EEeeCCCCccccC
Q psy14513 100 LDIQSNPWTCDCS 112 (209)
Q Consensus 100 l~l~~Np~~C~C~ 112 (209)
|++++|++...-+
T Consensus 273 L~Ls~N~l~~~ip 285 (313)
T 1ogq_A 273 LNVSFNNLCGEIP 285 (313)
T ss_dssp EECCSSEEEEECC
T ss_pred EECcCCcccccCC
Confidence 9999999886544
No 92
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.77 E-value=5e-09 Score=85.14 Aligned_cols=88 Identities=19% Similarity=0.153 Sum_probs=63.4
Q ss_pred Ccccccceecccccccccccc---ccCchhhcCCcccceecccccccccccCc-cccCCCCCcCEEeccCCcCcccCCCC
Q psy14513 16 DTQYTIMKVQLPYSTANSELY---AIRKNTFKNLLNLQTLYCNFNPKLTFIHP-YSFNNDWSLKEFYINNNAITSLPHEL 91 (209)
Q Consensus 16 ~~~~~l~~L~ll~~~s~n~l~---~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~-~~f~~l~~L~~L~Ls~N~l~~l~~~~ 91 (209)
....++..|.+ ++|.|+ .++...|.++++|++|++++| .++...+ ..+..+++|++|++++|+++.+|..+
T Consensus 198 ~~l~~L~~L~L----~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~ 272 (312)
T 1wwl_A 198 LKFPTLQVLAL----RNAGMETPSGVCSALAAARVQLQGLDLSHN-SLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL 272 (312)
T ss_dssp TSCTTCCEEEC----TTSCCCCHHHHHHHHHHTTCCCSEEECTTS-CCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSC
T ss_pred ccCCCCCEEEC----CCCcCcchHHHHHHHHhcCCCCCEEECCCC-cCCcccchhhhhhcCCCCEEECCCCccChhhhhc
Confidence 34445566666 788888 344466667888888888888 8877664 45566777888888888888777665
Q ss_pred CCCCCccEEEeeCCCCccc
Q psy14513 92 GDWDSLEVLDIQSNPWTCD 110 (209)
Q Consensus 92 ~~l~~L~~l~l~~Np~~C~ 110 (209)
. ++|+.|++++|.+...
T Consensus 273 ~--~~L~~L~Ls~N~l~~~ 289 (312)
T 1wwl_A 273 P--AKLSVLDLSYNRLDRN 289 (312)
T ss_dssp C--SEEEEEECCSSCCCSC
T ss_pred c--CCceEEECCCCCCCCC
Confidence 5 6788888888877653
No 93
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.77 E-value=1.2e-08 Score=92.72 Aligned_cols=91 Identities=24% Similarity=0.248 Sum_probs=75.6
Q ss_pred cceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcc-cCCCCCCCCCccE
Q psy14513 21 IMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITS-LPHELGDWDSLEV 99 (209)
Q Consensus 21 l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~ 99 (209)
+..|.+ ++|.+....+..|.++++|++|++++| .+....|..|..+++|++|++++|+++. +|..+..+++|+.
T Consensus 468 L~~L~L----~~N~l~~~~p~~l~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 542 (768)
T 3rgz_A 468 LETLIL----DFNDLTGEIPSGLSNCTNLNWISLSNN-RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 542 (768)
T ss_dssp CCEEEC----CSSCCCSCCCGGGGGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCE
T ss_pred ceEEEe----cCCcccCcCCHHHhcCCCCCEEEccCC-ccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCE
Confidence 444555 788888888888888999999999999 8888888888888899999999999986 6656688899999
Q ss_pred EEeeCCCCccccCcHhH
Q psy14513 100 LDIQSNPWTCDCSIQWL 116 (209)
Q Consensus 100 l~l~~Np~~C~C~~~~~ 116 (209)
+++++|++.|.++..++
T Consensus 543 L~Ls~N~l~g~ip~~~~ 559 (768)
T 3rgz_A 543 LDLNTNLFNGTIPAAMF 559 (768)
T ss_dssp EECCSSEEESBCCGGGG
T ss_pred EECCCCccCCcCChHHh
Confidence 99999999988886553
No 94
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.75 E-value=1.1e-08 Score=77.56 Aligned_cols=84 Identities=14% Similarity=0.110 Sum_probs=63.8
Q ss_pred ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCc-CcccCCCCCCCCCcc
Q psy14513 20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNA-ITSLPHELGDWDSLE 98 (209)
Q Consensus 20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~ 98 (209)
+|..|.+ ++|.++...+..|..+++|++|++++| .++...+..|..+++|++|++++|+ ++.++ .+..+++|+
T Consensus 89 ~L~~L~l----~~n~l~~~~~~~l~~l~~L~~L~Ls~n-~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~ 162 (197)
T 4ezg_A 89 NLERLRI----MGKDVTSDKIPNLSGLTSLTLLDISHS-AHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELK 162 (197)
T ss_dssp TCCEEEE----ECTTCBGGGSCCCTTCTTCCEEECCSS-BCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCC
T ss_pred CCCEEEe----ECCccCcccChhhcCCCCCCEEEecCC-ccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCC
Confidence 3455555 778888766677888888888888888 8887667777778888888888887 77775 346778888
Q ss_pred EEEeeCCCCcc
Q psy14513 99 VLDIQSNPWTC 109 (209)
Q Consensus 99 ~l~l~~Np~~C 109 (209)
.|++++|++.-
T Consensus 163 ~L~l~~n~i~~ 173 (197)
T 4ezg_A 163 SLNIQFDGVHD 173 (197)
T ss_dssp EEECTTBCCCC
T ss_pred EEECCCCCCcC
Confidence 88888877653
No 95
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.75 E-value=1.5e-08 Score=82.30 Aligned_cols=73 Identities=25% Similarity=0.324 Sum_probs=41.3
Q ss_pred ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccEEEeeCCCCcc
Q psy14513 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWTC 109 (209)
Q Consensus 31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~l~~Np~~C 109 (209)
++|.++.+++ |..+++|+.|++++| .++.+++ +..+++|++|++++|+++.+++ +..+++|+.+++++|++.+
T Consensus 159 ~~n~l~~~~~--l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 159 GNAQVSDLTP--LANLSKLTTLKADDN-KISDISP--LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEEC
T ss_pred cCCcCCCChh--hcCCCCCCEEECCCC-ccCcChh--hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeec
Confidence 4555555444 455555555555555 5555544 4445556666666666665542 3556666666666666654
No 96
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.74 E-value=2.6e-08 Score=91.28 Aligned_cols=78 Identities=23% Similarity=0.265 Sum_probs=68.2
Q ss_pred ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCCCCcc
Q psy14513 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSNPWTC 109 (209)
Q Consensus 31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~Np~~C 109 (209)
++|.+..+++.+|.++++|++|++++| .++.+.+..|.++++|+.|++++|.++.++... ..+++|+.|++++|.+..
T Consensus 298 ~~n~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 298 AYNKINKIADEAFYGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp ESCCCCEECTTTTTTCSSCCEEEEESC-CCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred CCCcCCCCChHHhcCCCCCCEEECCCC-CCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence 789999998889999999999999999 999888888988999999999999998887765 788889999888887653
No 97
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.74 E-value=1.1e-08 Score=83.14 Aligned_cols=84 Identities=10% Similarity=0.014 Sum_probs=64.2
Q ss_pred ccceecccccccccccccc---C-chhhcCCcccceecccccccccc---cCccccCCCCCcCEEeccCCcCcccCC-CC
Q psy14513 20 TIMKVQLPYSTANSELYAI---R-KNTFKNLLNLQTLYCNFNPKLTF---IHPYSFNNDWSLKEFYINNNAITSLPH-EL 91 (209)
Q Consensus 20 ~l~~L~ll~~~s~n~l~~l---~-~~~f~~l~~L~~L~Ls~n~~l~~---i~~~~f~~l~~L~~L~Ls~N~l~~l~~-~~ 91 (209)
++..|.+ ++|.+... + ...|.++++|++|++++| .++. +....|..+++|+.|++++|+++..++ ..
T Consensus 174 ~L~~L~L----s~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 248 (312)
T 1wwl_A 174 ALSTLDL----SDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248 (312)
T ss_dssp SCCEEEC----CSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC
T ss_pred CCCEEEC----CCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhh
Confidence 4455555 88887653 1 223478999999999999 9884 444566678899999999999998653 33
Q ss_pred -CCCCCccEEEeeCCCCc
Q psy14513 92 -GDWDSLEVLDIQSNPWT 108 (209)
Q Consensus 92 -~~l~~L~~l~l~~Np~~ 108 (209)
..+++|+.|++++|.+.
T Consensus 249 ~~~l~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 249 CDWPSQLNSLNLSFTGLK 266 (312)
T ss_dssp CCCCTTCCEEECTTSCCS
T ss_pred hhhcCCCCEEECCCCccC
Confidence 67899999999999887
No 98
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.73 E-value=1.3e-08 Score=89.62 Aligned_cols=81 Identities=19% Similarity=0.273 Sum_probs=71.3
Q ss_pred cceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccEE
Q psy14513 21 IMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVL 100 (209)
Q Consensus 21 l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l 100 (209)
+..|.+ ++|.|+.++. |.++++|+.|+|++| .++.++. .|..+++|+.|+|++|+++++| .+..+++|+.|
T Consensus 443 L~~L~L----s~n~l~~lp~--~~~l~~L~~L~Ls~N-~l~~lp~-~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L 513 (567)
T 1dce_A 443 VRVLHL----AHKDLTVLCH--LEQLLLVTHLDLSHN-RLRALPP-ALAALRCLEVLQASDNALENVD-GVANLPRLQEL 513 (567)
T ss_dssp CSEEEC----TTSCCSSCCC--GGGGTTCCEEECCSS-CCCCCCG-GGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEE
T ss_pred ceEEEe----cCCCCCCCcC--ccccccCcEeecCcc-cccccch-hhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEE
Confidence 445666 9999999875 899999999999999 9998855 6778999999999999999998 66899999999
Q ss_pred EeeCCCCccc
Q psy14513 101 DIQSNPWTCD 110 (209)
Q Consensus 101 ~l~~Np~~C~ 110 (209)
++++|.+..-
T Consensus 514 ~Ls~N~l~~~ 523 (567)
T 1dce_A 514 LLCNNRLQQS 523 (567)
T ss_dssp ECCSSCCCSS
T ss_pred ECCCCCCCCC
Confidence 9999988753
No 99
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.73 E-value=9.5e-09 Score=92.94 Aligned_cols=76 Identities=32% Similarity=0.350 Sum_probs=68.0
Q ss_pred cccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccEEEeeCCCCc
Q psy14513 30 TANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWT 108 (209)
Q Consensus 30 ~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~l~~Np~~ 108 (209)
+++|.+..+++..| ++++|++|+|++| .++.++ ..|..+.+|++|+|++|+++.+|..+..+++|++|+|++|.+.
T Consensus 231 Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N-~l~~lp-~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~ 306 (727)
T 4b8c_D 231 LSNLQIFNISANIF-KYDFLTRLYLNGN-SLTELP-AEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVT 306 (727)
T ss_dssp CTTSCCSCCCGGGG-GCCSCSCCBCTTS-CCSCCC-GGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCC
T ss_pred CCCCCCCCCChhhc-CCCCCCEEEeeCC-cCcccC-hhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCC
Confidence 38999999998877 7999999999999 999776 5567799999999999999999888888999999999999764
No 100
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.72 E-value=1.6e-08 Score=82.27 Aligned_cols=87 Identities=17% Similarity=0.170 Sum_probs=59.3
Q ss_pred CcccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccC-CCCCcCEEeccCCcCcccCCCCCCC
Q psy14513 16 DTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFN-NDWSLKEFYINNNAITSLPHELGDW 94 (209)
Q Consensus 16 ~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~-~l~~L~~L~Ls~N~l~~l~~~~~~l 94 (209)
..+.++..|.+ ++|.++.+++..|..+++|++|++++| .++.+.+..+. .+++|++|++++|.++.++.. ..+
T Consensus 117 ~~~~~L~~L~l----~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l 190 (317)
T 3o53_A 117 SRGQGKKNIYL----ANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVF 190 (317)
T ss_dssp CCCSSCEEEEC----CSSCCCSGGGBCTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCC
T ss_pred cccCCCCEEEC----CCCCCCCccchhhhccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCcCcccccc-ccc
Confidence 33455566666 777777777777777777777777777 77777665553 466777777777777776433 236
Q ss_pred CCccEEEeeCCCCc
Q psy14513 95 DSLEVLDIQSNPWT 108 (209)
Q Consensus 95 ~~L~~l~l~~Np~~ 108 (209)
++|+.|++++|.+.
T Consensus 191 ~~L~~L~Ls~N~l~ 204 (317)
T 3o53_A 191 AKLKTLDLSSNKLA 204 (317)
T ss_dssp TTCCEEECCSSCCC
T ss_pred ccCCEEECCCCcCC
Confidence 67777777777665
No 101
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.71 E-value=1.9e-08 Score=81.59 Aligned_cols=84 Identities=19% Similarity=0.144 Sum_probs=64.4
Q ss_pred cccceeccccccccccccccCch---hhcCCcccceecccccccccccCccccCCC---CCcCEEeccCCcCcccCCCCC
Q psy14513 19 YTIMKVQLPYSTANSELYAIRKN---TFKNLLNLQTLYCNFNPKLTFIHPYSFNND---WSLKEFYINNNAITSLPHELG 92 (209)
Q Consensus 19 ~~l~~L~ll~~~s~n~l~~l~~~---~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l---~~L~~L~Ls~N~l~~l~~~~~ 92 (209)
.+|..|.+ ++|.++.++.. .|.++++|++|+|++| .+..+.|..+..+ ++|++|++++|+++.+|..+.
T Consensus 197 ~~L~~L~L----s~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~ 271 (310)
T 4glp_A 197 PAIQNLAL----RNTGMETPTGVCAALAAAGVQPHSLDLSHN-SLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP 271 (310)
T ss_dssp CCCCSCBC----CSSCCCCHHHHHHHHHHHTCCCSSEECTTS-CCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC
T ss_pred CCCCEEEC----CCCCCCchHHHHHHHHhcCCCCCEEECCCC-CCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc
Confidence 34555666 88998876643 4577889999999999 8888866555444 589999999999998877663
Q ss_pred CCCCccEEEeeCCCCcc
Q psy14513 93 DWDSLEVLDIQSNPWTC 109 (209)
Q Consensus 93 ~l~~L~~l~l~~Np~~C 109 (209)
++|+.|++++|.+..
T Consensus 272 --~~L~~L~Ls~N~l~~ 286 (310)
T 4glp_A 272 --AKLRVLDLSSNRLNR 286 (310)
T ss_dssp --SCCSCEECCSCCCCS
T ss_pred --CCCCEEECCCCcCCC
Confidence 688889999888874
No 102
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.71 E-value=9.5e-09 Score=83.62 Aligned_cols=75 Identities=17% Similarity=0.215 Sum_probs=42.0
Q ss_pred ccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcc-cCCCCCCCCCccEEEeeCCCCc
Q psy14513 33 SELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITS-LPHELGDWDSLEVLDIQSNPWT 108 (209)
Q Consensus 33 n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~l~l~~Np~~ 108 (209)
|.+....+..|.++++|++|++++| .++...+..|..+++|++|++++|.++. +|..+..+++|++|++++|.+.
T Consensus 87 n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 162 (313)
T 1ogq_A 87 NNLVGPIPPAIAKLTQLHYLYITHT-NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162 (313)
T ss_dssp TTEESCCCGGGGGCTTCSEEEEEEE-CCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCE
T ss_pred CcccccCChhHhcCCCCCEEECcCC-eeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCccc
Confidence 5555555555556666666666666 5555555555555556666666665553 3333355555555555555554
No 103
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.70 E-value=1.5e-08 Score=82.20 Aligned_cols=85 Identities=7% Similarity=0.019 Sum_probs=65.5
Q ss_pred cccceeccccccccccccc---cC-chhhcCCcccceecccccccccccCcc---ccCCCCCcCEEeccCCcCccc-CCC
Q psy14513 19 YTIMKVQLPYSTANSELYA---IR-KNTFKNLLNLQTLYCNFNPKLTFIHPY---SFNNDWSLKEFYINNNAITSL-PHE 90 (209)
Q Consensus 19 ~~l~~L~ll~~~s~n~l~~---l~-~~~f~~l~~L~~L~Ls~n~~l~~i~~~---~f~~l~~L~~L~Ls~N~l~~l-~~~ 90 (209)
.+|..|++ ++|.+.. ++ ...+..+++|++|++++| .++.++.. .+..+++|++|+|++|+++.+ |..
T Consensus 169 ~~L~~L~L----s~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~ 243 (310)
T 4glp_A 169 PALTSLDL----SDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS 243 (310)
T ss_dssp TTCCEEEC----CSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC
T ss_pred CCCCEEEC----CCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhh
Confidence 34555666 8898765 33 233468999999999999 99766553 356678999999999999996 666
Q ss_pred CCCC---CCccEEEeeCCCCc
Q psy14513 91 LGDW---DSLEVLDIQSNPWT 108 (209)
Q Consensus 91 ~~~l---~~L~~l~l~~Np~~ 108 (209)
+..+ ++|++|++++|.+.
T Consensus 244 ~~~~~~~~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 244 APRCMWSSALNSLNLSFAGLE 264 (310)
T ss_dssp CSSCCCCTTCCCEECCSSCCC
T ss_pred HHhccCcCcCCEEECCCCCCC
Confidence 6444 79999999999987
No 104
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.68 E-value=2.1e-08 Score=86.53 Aligned_cols=83 Identities=18% Similarity=0.178 Sum_probs=41.5
Q ss_pred cccceeccccccccccccccCchhhcCCcccceecccccccccccCccccC-CCCCcCEEeccCCcCcccCCCCCCCCCc
Q psy14513 19 YTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFN-NDWSLKEFYINNNAITSLPHELGDWDSL 97 (209)
Q Consensus 19 ~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~-~l~~L~~L~Ls~N~l~~l~~~~~~l~~L 97 (209)
.++..|.+ ++|.++.+++..|.++++|+.|++++| .++.+.+..|. .+++|+.|+|++|.++.++.. ..+++|
T Consensus 120 ~~L~~L~L----~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~-~~l~~L 193 (487)
T 3oja_A 120 QGKKNIYL----ANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKL 193 (487)
T ss_dssp SSCEEEEC----CSSCCCSGGGBCGGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTC
T ss_pred CCCCEEEC----CCCCCCCCCchhhcCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCCcccccccc-ccCCCC
Confidence 33444444 555555555555555555555555555 55555444443 344455555555555544322 124444
Q ss_pred cEEEeeCCCC
Q psy14513 98 EVLDIQSNPW 107 (209)
Q Consensus 98 ~~l~l~~Np~ 107 (209)
+.|++++|.+
T Consensus 194 ~~L~Ls~N~l 203 (487)
T 3oja_A 194 KTLDLSSNKL 203 (487)
T ss_dssp CEEECCSSCC
T ss_pred CEEECCCCCC
Confidence 4444444444
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.67 E-value=6.8e-08 Score=76.72 Aligned_cols=70 Identities=23% Similarity=0.383 Sum_probs=38.0
Q ss_pred ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccEEEeeCCCC
Q psy14513 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPW 107 (209)
Q Consensus 31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~l~~Np~ 107 (209)
++|.|+.+++ |.++++|++|++++| .++.+++..+ .+|+.|++++|+++.++ .+..+++|+.|++++|.+
T Consensus 71 ~~N~i~~~~~--l~~l~~L~~L~L~~N-~l~~l~~~~~---~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i 140 (263)
T 1xeu_A 71 SHNQISDLSP--LKDLTKLEELSVNRN-RLKNLNGIPS---ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKL 140 (263)
T ss_dssp CSSCCCCCGG--GTTCSSCCEEECCSS-CCSCCTTCCC---SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCC
T ss_pred CCCccCCChh--hccCCCCCEEECCCC-ccCCcCcccc---CcccEEEccCCccCCCh-hhcCcccccEEECCCCcC
Confidence 6667776665 666677777777776 6666554322 44444444444444442 123444444555544444
No 106
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.66 E-value=6.3e-08 Score=89.15 Aligned_cols=85 Identities=20% Similarity=0.205 Sum_probs=70.2
Q ss_pred ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCC-------CcCEEeccCCcCcccCCCCC
Q psy14513 20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDW-------SLKEFYINNNAITSLPHELG 92 (209)
Q Consensus 20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~-------~L~~L~Ls~N~l~~l~~~~~ 92 (209)
++..|.+ ++|.+..++...|..+++|+.|+|++| .++.++...|.... +|+.|+|++|+++.+|..+.
T Consensus 674 ~L~~L~L----s~N~L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~ 748 (876)
T 4ecn_A 674 NASTVTL----SYNEIQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFR 748 (876)
T ss_dssp CEEEEEC----CSSCCCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGS
T ss_pred CcCEEEc----cCCcCCccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCCCCccchHHhh
Confidence 4555666 889999888888888899999999999 99988888877543 78999999999998887765
Q ss_pred --CCCCccEEEeeCCCCcc
Q psy14513 93 --DWDSLEVLDIQSNPWTC 109 (209)
Q Consensus 93 --~l~~L~~l~l~~Np~~C 109 (209)
.+++|+.|++++|.+..
T Consensus 749 ~~~l~~L~~L~Ls~N~L~~ 767 (876)
T 4ecn_A 749 ATTLPYLSNMDVSYNCFSS 767 (876)
T ss_dssp TTTCTTCCEEECCSSCCSS
T ss_pred hccCCCcCEEEeCCCCCCc
Confidence 88899999999988764
No 107
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.64 E-value=6.3e-08 Score=78.56 Aligned_cols=70 Identities=26% Similarity=0.422 Sum_probs=32.5
Q ss_pred ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccEEEeeCCC
Q psy14513 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNP 106 (209)
Q Consensus 31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~l~~Np 106 (209)
++|.++.+++ |..+++|++|++++| .++.+++ +..+++|+.|++++|+++.++. +..+++|+.|++++|.
T Consensus 115 ~~n~l~~~~~--l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 115 TSTQITDVTP--LAGLSNLQVLYLDLN-QITNISP--LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNK 184 (308)
T ss_dssp TTSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred CCCCCCCchh--hcCCCCCCEEECCCC-ccCcCcc--ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCc
Confidence 4555555442 445555555555555 5544443 3334444444444444444332 3334444444444443
No 108
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.64 E-value=1.1e-07 Score=87.56 Aligned_cols=75 Identities=24% Similarity=0.215 Sum_probs=32.8
Q ss_pred ccccccccCchhh-cCCcccceecccccccccccCccccCCCCCcCEEeccC------CcCcc-cCCCCCCCCCccEEEe
Q psy14513 31 ANSELYAIRKNTF-KNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINN------NAITS-LPHELGDWDSLEVLDI 102 (209)
Q Consensus 31 s~n~l~~l~~~~f-~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~------N~l~~-l~~~~~~l~~L~~l~l 102 (209)
++|.|+.++...+ ..+++|+.|+|++| .++.++.. +..+++|+.|+|++ |++.. +|..+..+++|+.|++
T Consensus 736 s~N~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~~-l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~L 813 (876)
T 4ecn_A 736 RFNKLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQ-PLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI 813 (876)
T ss_dssp CSSCCCCCCGGGSTTTCTTCCEEECCSS-CCSSCCCG-GGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEEC
T ss_pred CCCCCccchHHhhhccCCCcCEEEeCCC-CCCccchh-hhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEEC
Confidence 4555554443322 24555555555555 55554322 22344444444433 33322 3333344444444444
Q ss_pred eCCCC
Q psy14513 103 QSNPW 107 (209)
Q Consensus 103 ~~Np~ 107 (209)
++|++
T Consensus 814 s~N~L 818 (876)
T 4ecn_A 814 GSNDI 818 (876)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 44444
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.63 E-value=3.5e-08 Score=79.51 Aligned_cols=72 Identities=22% Similarity=0.291 Sum_probs=36.9
Q ss_pred ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccEEEeeCCCCc
Q psy14513 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWT 108 (209)
Q Consensus 31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~l~~Np~~ 108 (209)
++|.++.++ .+..+++|+.|++++| .++.+ ..+..+++|+.|++++|+++.+++ +..+++|+.|++++|.+.
T Consensus 120 ~~n~i~~~~--~l~~l~~L~~L~l~~n-~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 120 EHNGISDIN--GLVHLPQLESLYLGNN-KITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp TTSCCCCCG--GGGGCTTCCEEECCSS-CCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred CCCcCCCCh--hhcCCCCCCEEEccCC-cCCcc--hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCC
Confidence 555555542 3445555555555555 55554 234445555555555555555433 444455555555555443
No 110
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.63 E-value=4.1e-08 Score=86.44 Aligned_cols=77 Identities=18% Similarity=0.232 Sum_probs=58.9
Q ss_pred ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCc-------CEEeccCCcCcccCCCCC
Q psy14513 20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSL-------KEFYINNNAITSLPHELG 92 (209)
Q Consensus 20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L-------~~L~Ls~N~l~~l~~~~~ 92 (209)
+|..|.+ ++|.|+.++. |. ++|+.|+|++| .|+.++. |.. +| +.|+|++|+++.+|..+.
T Consensus 161 ~L~~L~L----s~N~L~~lp~--l~--~~L~~L~Ls~N-~L~~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~ 227 (571)
T 3cvr_A 161 SLEVLSV----RNNQLTFLPE--LP--ESLEALDVSTN-LLESLPA--VPV--RNHHSEETEIFFRCRENRITHIPENIL 227 (571)
T ss_dssp TCCEEEC----CSSCCSCCCC--CC--TTCCEEECCSS-CCSSCCC--CC----------CCEEEECCSSCCCCCCGGGG
T ss_pred CcCEEEC----CCCCCCCcch--hh--CCCCEEECcCC-CCCchhh--HHH--hhhcccccceEEecCCCcceecCHHHh
Confidence 4455555 7788887776 54 78888888888 8887777 442 66 899999999999888775
Q ss_pred CCCCccEEEeeCCCCcc
Q psy14513 93 DWDSLEVLDIQSNPWTC 109 (209)
Q Consensus 93 ~l~~L~~l~l~~Np~~C 109 (209)
.+++|+.|++++|++.+
T Consensus 228 ~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 228 SLDPTCTIILEDNPLSS 244 (571)
T ss_dssp GSCTTEEEECCSSSCCH
T ss_pred cCCCCCEEEeeCCcCCC
Confidence 59999999999999876
No 111
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.63 E-value=3.1e-08 Score=81.16 Aligned_cols=38 Identities=24% Similarity=0.434 Sum_probs=21.3
Q ss_pred CCCcCEEeccCCcCcccCCCCCCCCCccEEEeeCCCCc
Q psy14513 71 DWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWT 108 (209)
Q Consensus 71 l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~l~~Np~~ 108 (209)
+++|++|++++|+++.+|..+..+++|+.|++++|.+.
T Consensus 182 l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp STTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC
T ss_pred CCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC
Confidence 45555555555555555544455556666666666554
No 112
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.61 E-value=5.4e-08 Score=86.62 Aligned_cols=85 Identities=20% Similarity=0.237 Sum_probs=72.8
Q ss_pred ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCC-------CcCEEeccCCcCcccCCCCC
Q psy14513 20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDW-------SLKEFYINNNAITSLPHELG 92 (209)
Q Consensus 20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~-------~L~~L~Ls~N~l~~l~~~~~ 92 (209)
++..|.+ ++|.++.+++..|..+++|++|++++| .++.+++..|.... +|+.|++++|+++.+|..+.
T Consensus 434 ~L~~L~L----s~N~l~~lp~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~ 508 (636)
T 4eco_A 434 NVSSINL----SNNQISKFPKELFSTGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFR 508 (636)
T ss_dssp CEEEEEC----CSSCCCSCCTHHHHTTCCCSEEECCSS-CCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGS
T ss_pred CCCEEEC----cCCccCcCCHHHHccCCCCCEEECCCC-CCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhh
Confidence 4555666 889999999888888999999999999 99999888887554 89999999999999887775
Q ss_pred --CCCCccEEEeeCCCCcc
Q psy14513 93 --DWDSLEVLDIQSNPWTC 109 (209)
Q Consensus 93 --~l~~L~~l~l~~Np~~C 109 (209)
.+++|+.|++++|.+..
T Consensus 509 ~~~l~~L~~L~Ls~N~l~~ 527 (636)
T 4eco_A 509 ATTLPYLVGIDLSYNSFSK 527 (636)
T ss_dssp TTTCTTCCEEECCSSCCSS
T ss_pred hccCCCcCEEECCCCCCCC
Confidence 89999999999998875
No 113
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.60 E-value=1.2e-07 Score=76.26 Aligned_cols=72 Identities=26% Similarity=0.397 Sum_probs=33.8
Q ss_pred ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccEEEeeCCCCc
Q psy14513 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWT 108 (209)
Q Consensus 31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~l~~Np~~ 108 (209)
++|.++.+ ..|..+++|++|++++| .++.+++ +..+++|+.|++++|.++.++. +..+++|+.|++++|++.
T Consensus 142 ~~n~l~~~--~~l~~l~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 142 GNNKITDI--TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CSSCCCCC--GGGGGCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEE
T ss_pred cCCcCCcc--hhhccCCCCCEEEccCC-ccccchh--hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCccc
Confidence 44444444 23444455555555555 4444443 3444445555555555544432 344444555555554443
No 114
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.58 E-value=2.3e-08 Score=81.99 Aligned_cols=85 Identities=22% Similarity=0.285 Sum_probs=68.5
Q ss_pred cccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCc
Q psy14513 19 YTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSL 97 (209)
Q Consensus 19 ~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L 97 (209)
.++..|.+ ++|.++.++ .|..+++|++|++++| .++.+ ..+..+++|+.|++++|.++..+... ..+++|
T Consensus 243 ~~L~~L~l----~~n~l~~~~--~~~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 313 (347)
T 4fmz_A 243 SQLTWLEI----GTNQISDIN--AVKDLTKLKMLNVGSN-QISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL 313 (347)
T ss_dssp TTCCEEEC----CSSCCCCCG--GGTTCTTCCEEECCSS-CCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTC
T ss_pred CCCCEEEC----CCCccCCCh--hHhcCCCcCEEEccCC-ccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccC
Confidence 34555666 889998874 6788999999999999 88887 34677888999999999998866555 788999
Q ss_pred cEEEeeCCCCccccC
Q psy14513 98 EVLDIQSNPWTCDCS 112 (209)
Q Consensus 98 ~~l~l~~Np~~C~C~ 112 (209)
+.+++++|++....+
T Consensus 314 ~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 314 TTLFLSQNHITDIRP 328 (347)
T ss_dssp SEEECCSSSCCCCGG
T ss_pred CEEEccCCccccccC
Confidence 999999999887544
No 115
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.55 E-value=1.4e-07 Score=83.96 Aligned_cols=78 Identities=19% Similarity=0.227 Sum_probs=65.4
Q ss_pred ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccE
Q psy14513 20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEV 99 (209)
Q Consensus 20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~ 99 (209)
++..|.+ ++|.|+.++ ..+++|+.|++++| .++.++. .+++|+.|+|++|+++.+|..+..+++|+.
T Consensus 222 ~L~~L~L----s~N~L~~lp----~~l~~L~~L~Ls~N-~L~~lp~----~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~ 288 (622)
T 3g06_A 222 GLKELIV----SGNRLTSLP----VLPSELKELMVSGN-RLTSLPM----LPSGLLSLSVYRNQLTRLPESLIHLSSETT 288 (622)
T ss_dssp TCCEEEC----CSSCCSCCC----CCCTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCCSCCGGGGGSCTTCE
T ss_pred CCCEEEc----cCCccCcCC----CCCCcCcEEECCCC-CCCcCCc----ccccCcEEeCCCCCCCcCCHHHhhccccCE
Confidence 4555666 888888877 35688999999999 9998877 367899999999999999877788999999
Q ss_pred EEeeCCCCccc
Q psy14513 100 LDIQSNPWTCD 110 (209)
Q Consensus 100 l~l~~Np~~C~ 110 (209)
|++++|++.+.
T Consensus 289 L~L~~N~l~~~ 299 (622)
T 3g06_A 289 VNLEGNPLSER 299 (622)
T ss_dssp EECCSCCCCHH
T ss_pred EEecCCCCCCc
Confidence 99999999863
No 116
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.53 E-value=1.1e-07 Score=77.78 Aligned_cols=82 Identities=18% Similarity=0.244 Sum_probs=69.9
Q ss_pred ccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCc
Q psy14513 18 QYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSL 97 (209)
Q Consensus 18 ~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L 97 (209)
..++..|.+ ++|.++.+++ +..+++|++|++++| .++.+ ..+..+++|+.|++++|+++.++ .+..+++|
T Consensus 220 ~~~L~~L~l----~~n~l~~~~~--~~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L 289 (347)
T 4fmz_A 220 MTRLNSLKI----GNNKITDLSP--LANLSQLTWLEIGTN-QISDI--NAVKDLTKLKMLNVGSNQISDIS-VLNNLSQL 289 (347)
T ss_dssp CTTCCEEEC----CSSCCCCCGG--GTTCTTCCEEECCSS-CCCCC--GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTC
T ss_pred CCcCCEEEc----cCCccCCCcc--hhcCCCCCEEECCCC-ccCCC--hhHhcCCCcCEEEccCCccCCCh-hhcCCCCC
Confidence 345566777 8999999887 889999999999999 99987 35777899999999999999884 34788999
Q ss_pred cEEEeeCCCCcc
Q psy14513 98 EVLDIQSNPWTC 109 (209)
Q Consensus 98 ~~l~l~~Np~~C 109 (209)
+.|++++|++..
T Consensus 290 ~~L~L~~n~l~~ 301 (347)
T 4fmz_A 290 NSLFLNNNQLGN 301 (347)
T ss_dssp SEEECCSSCCCG
T ss_pred CEEECcCCcCCC
Confidence 999999998864
No 117
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.51 E-value=3.3e-07 Score=80.67 Aligned_cols=15 Identities=40% Similarity=0.510 Sum_probs=5.9
Q ss_pred CcCEEeccCCcCccc
Q psy14513 73 SLKEFYINNNAITSL 87 (209)
Q Consensus 73 ~L~~L~Ls~N~l~~l 87 (209)
+|+.|++++|+++.+
T Consensus 161 ~L~~L~Ls~N~L~~l 175 (571)
T 3cvr_A 161 SLEVLSVRNNQLTFL 175 (571)
T ss_dssp TCCEEECCSSCCSCC
T ss_pred CcCEEECCCCCCCCc
Confidence 333344444433333
No 118
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.51 E-value=1.7e-07 Score=77.28 Aligned_cols=92 Identities=24% Similarity=0.246 Sum_probs=59.7
Q ss_pred cccccCCcccccceeccccccccccc-cccCchhhcCCcccce-ecccccccccccCccccCCCCCcCEEeccCCcCccc
Q psy14513 10 RQDISYDTQYTIMKVQLPYSTANSEL-YAIRKNTFKNLLNLQT-LYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSL 87 (209)
Q Consensus 10 ~~~~~~~~~~~l~~L~ll~~~s~n~l-~~l~~~~f~~l~~L~~-L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l 87 (209)
...|+...|.++..|..| ++++|.+ ..+++++|.+++++++ +++++| .+..+++++|.++++|++|++++|+++.+
T Consensus 42 i~~i~~~~f~~l~~L~~L-~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N-~l~~l~~~~f~~l~~L~~L~l~~n~l~~~ 119 (350)
T 4ay9_X 42 LRVIQKGAFSGFGDLEKI-EISQNDVLEVIEADVFSNLPKLHEIRIEKAN-NLLYINPEAFQNLPNLQYLLISNTGIKHL 119 (350)
T ss_dssp CSEECTTSSTTCTTCCEE-EEECCTTCCEECTTSBCSCTTCCEEEEEEET-TCCEECTTSBCCCTTCCEEEEEEECCSSC
T ss_pred CCCcCHHHHcCCCCCCEE-ECcCCCCCCccChhHhhcchhhhhhhcccCC-cccccCchhhhhccccccccccccccccC
Confidence 445666666555544443 2266765 4577778888887765 455667 88888888888888888888888888777
Q ss_pred CCCC-CCCCCccEEEee
Q psy14513 88 PHEL-GDWDSLEVLDIQ 103 (209)
Q Consensus 88 ~~~~-~~l~~L~~l~l~ 103 (209)
+... .....+..+++.
T Consensus 120 ~~~~~~~~~~l~~l~l~ 136 (350)
T 4ay9_X 120 PDVHKIHSLQKVLLDIQ 136 (350)
T ss_dssp CCCTTCCBSSCEEEEEE
T ss_pred Cchhhcccchhhhhhhc
Confidence 6544 333334444443
No 119
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.49 E-value=3.4e-07 Score=81.17 Aligned_cols=72 Identities=22% Similarity=0.291 Sum_probs=35.6
Q ss_pred ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccEEEeeCCCCc
Q psy14513 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWT 108 (209)
Q Consensus 31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~l~~Np~~ 108 (209)
++|.|..++ .|..+++|+.|+|++| .++.+ ..+..+++|+.|+|++|+++.+++ +..+++|+.|+|++|++.
T Consensus 117 s~N~l~~l~--~l~~l~~L~~L~Ls~N-~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 117 EHNGISDIN--GLVHLPQLESLYLGNN-KITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp TTSCCCCCG--GGGGCTTCSEEECCSS-CCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred cCCCCCCCc--cccCCCccCEEECCCC-ccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCC
Confidence 445555442 2444555555555555 55544 234445555555555555555433 444555555555555443
No 120
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.49 E-value=1.5e-09 Score=82.60 Aligned_cols=79 Identities=23% Similarity=0.307 Sum_probs=49.8
Q ss_pred ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCC--CCCCCCCccEEEeeCCCCc
Q psy14513 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPH--ELGDWDSLEVLDIQSNPWT 108 (209)
Q Consensus 31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~--~~~~l~~L~~l~l~~Np~~ 108 (209)
++|.++.++. .+..+++|++|++++| .++.++ .+..+++|++|++++|+++.++. .+..+++|+++++++|++.
T Consensus 78 ~~n~l~~l~~-~~~~~~~L~~L~L~~N-~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 78 GRNLIKKIEN-LDAVADTLEELWISYN-QIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp EEEEECSCSS-HHHHHHHCSEEEEEEE-ECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred CCCCcccccc-hhhcCCcCCEEECcCC-cCCcCC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 4455554432 3333455555555555 555543 24445667778888888777654 2377888999999999998
Q ss_pred cccCc
Q psy14513 109 CDCSI 113 (209)
Q Consensus 109 C~C~~ 113 (209)
|.|+.
T Consensus 154 ~~~~~ 158 (198)
T 1ds9_A 154 NDYKE 158 (198)
T ss_dssp HHHHT
T ss_pred ccccc
Confidence 88764
No 121
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.47 E-value=2.6e-07 Score=81.83 Aligned_cols=81 Identities=25% Similarity=0.372 Sum_probs=70.1
Q ss_pred ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccE
Q psy14513 20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEV 99 (209)
Q Consensus 20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~ 99 (209)
+|..|.+ ++|.|+.+ ..|..+++|+.|+|++| .+..+.+ +..+++|+.|+|++|.++.++ .+..+++|+.
T Consensus 132 ~L~~L~L----s~N~l~~l--~~l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~ 201 (605)
T 1m9s_A 132 QLESLYL----GNNKITDI--TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDV 201 (605)
T ss_dssp TCSEEEC----CSSCCCCC--GGGGSCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSE
T ss_pred ccCEEEC----CCCccCCc--hhhcccCCCCEEECcCC-cCCCchh--hccCCCCCEEECcCCCCCCCh-HHccCCCCCE
Confidence 3445555 89999998 57889999999999999 9999887 778999999999999999984 4588999999
Q ss_pred EEeeCCCCccc
Q psy14513 100 LDIQSNPWTCD 110 (209)
Q Consensus 100 l~l~~Np~~C~ 110 (209)
|+|++|++...
T Consensus 202 L~L~~N~l~~~ 212 (605)
T 1m9s_A 202 LELFSQECLNK 212 (605)
T ss_dssp EECCSEEEECC
T ss_pred EEccCCcCcCC
Confidence 99999988654
No 122
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.44 E-value=7e-07 Score=76.41 Aligned_cols=69 Identities=23% Similarity=0.272 Sum_probs=37.7
Q ss_pred ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccEEEeeCCCCc
Q psy14513 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWT 108 (209)
Q Consensus 31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~l~~Np~~ 108 (209)
++|.++.++ |..+++|++|++++| .++.++ |..+++|++|++++|+++.++ +..+++|+.|++++|.+.
T Consensus 72 s~n~l~~~~---~~~l~~L~~L~Ls~N-~l~~~~---~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~ 140 (457)
T 3bz5_A 72 TSNNITTLD---LSQNTNLTYLACDSN-KLTNLD---VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLT 140 (457)
T ss_dssp CSSCCSCCC---CTTCTTCSEEECCSS-CCSCCC---CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCS
T ss_pred cCCcCCeEc---cccCCCCCEEECcCC-CCceee---cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccc
Confidence 555555553 455555666666666 555542 444555666666666555543 344555555555555543
No 123
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.42 E-value=4.4e-07 Score=74.09 Aligned_cols=82 Identities=17% Similarity=0.180 Sum_probs=71.5
Q ss_pred ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcC-EEeccCCcCcccCCCC-CCCCCc
Q psy14513 20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLK-EFYINNNAITSLPHEL-GDWDSL 97 (209)
Q Consensus 20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~-~L~Ls~N~l~~l~~~~-~~l~~L 97 (209)
++..+.+ ++|.++.|++++|.++.+|+.+++.+| +..|++.+|.++.+|+ .+++.+ .++.++... ..+++|
T Consensus 227 ~L~~l~L----~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L 299 (329)
T 3sb4_A 227 NLVSLDI----SKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNL 299 (329)
T ss_dssp TCCEEEC----TTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTE
T ss_pred CCeEEEC----CCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccC
Confidence 4566666 788999999999999999999999988 7889999999999999 999988 888888777 889999
Q ss_pred cEEEeeCCCCc
Q psy14513 98 EVLDIQSNPWT 108 (209)
Q Consensus 98 ~~l~l~~Np~~ 108 (209)
+.+++.+|.+.
T Consensus 300 ~~l~l~~n~i~ 310 (329)
T 3sb4_A 300 RYVLATGDKIT 310 (329)
T ss_dssp EEEEECSSCCC
T ss_pred CEEEeCCCccC
Confidence 99999887653
No 124
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.39 E-value=6.6e-07 Score=76.58 Aligned_cols=79 Identities=22% Similarity=0.321 Sum_probs=68.8
Q ss_pred cccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCcc
Q psy14513 19 YTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLE 98 (209)
Q Consensus 19 ~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~ 98 (209)
.+++.|++ ++|.++.++ .|..+++|++|++++| .++.++ +..+++|++|++++|.++.++ +..+++|+
T Consensus 42 ~~L~~L~L----s~n~l~~~~--~l~~l~~L~~L~Ls~n-~l~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~ 109 (457)
T 3bz5_A 42 ATLTSLDC----HNSSITDMT--GIEKLTGLTKLICTSN-NITTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLT 109 (457)
T ss_dssp TTCCEEEC----CSSCCCCCT--TGGGCTTCSEEECCSS-CCSCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCC
T ss_pred CCCCEEEc----cCCCcccCh--hhcccCCCCEEEccCC-cCCeEc---cccCCCCCEEECcCCCCceee--cCCCCcCC
Confidence 44555666 899999986 6889999999999999 999984 777899999999999999985 67899999
Q ss_pred EEEeeCCCCcc
Q psy14513 99 VLDIQSNPWTC 109 (209)
Q Consensus 99 ~l~l~~Np~~C 109 (209)
+|++++|.+..
T Consensus 110 ~L~L~~N~l~~ 120 (457)
T 3bz5_A 110 YLNCDTNKLTK 120 (457)
T ss_dssp EEECCSSCCSC
T ss_pred EEECCCCcCCe
Confidence 99999998864
No 125
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.38 E-value=6e-07 Score=76.71 Aligned_cols=80 Identities=23% Similarity=0.358 Sum_probs=50.9
Q ss_pred ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccE
Q psy14513 20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEV 99 (209)
Q Consensus 20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~ 99 (209)
++..|.+ ++|.+..+++ +..+++|+.|++++| .+..+.+ +..+++|+.|++++|+++.++ .+..+++|+.
T Consensus 288 ~L~~L~L----~~n~l~~~~~--~~~l~~L~~L~L~~n-~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~ 357 (466)
T 1o6v_A 288 ALTNLEL----NENQLEDISP--ISNLKNLTYLTLYFN-NISDISP--VSSLTKLQRLFFYNNKVSDVS-SLANLTNINW 357 (466)
T ss_dssp TCSEEEC----CSSCCSCCGG--GGGCTTCSEEECCSS-CCSCCGG--GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCE
T ss_pred ccCeEEc----CCCcccCchh--hcCCCCCCEEECcCC-cCCCchh--hccCccCCEeECCCCccCCch-hhccCCCCCE
Confidence 3444555 6777777664 566777777777777 7666655 445666777777777666652 2356666666
Q ss_pred EEeeCCCCcc
Q psy14513 100 LDIQSNPWTC 109 (209)
Q Consensus 100 l~l~~Np~~C 109 (209)
+++++|++..
T Consensus 358 L~l~~n~l~~ 367 (466)
T 1o6v_A 358 LSAGHNQISD 367 (466)
T ss_dssp EECCSSCCCB
T ss_pred EeCCCCccCc
Confidence 6666666644
No 126
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.38 E-value=3.5e-07 Score=78.16 Aligned_cols=80 Identities=28% Similarity=0.398 Sum_probs=62.2
Q ss_pred cccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCcc
Q psy14513 19 YTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLE 98 (209)
Q Consensus 19 ~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~ 98 (209)
.+++.|.+ ++|.+..+++ |.++++|++|++++| .+..+++ |..+++|++|++++|.++.++. +..+++|+
T Consensus 68 ~~L~~L~L----s~n~l~~~~~--~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~ 137 (466)
T 1o6v_A 68 NNLTQINF----SNNQLTDITP--LKNLTKLVDILMNNN-QIADITP--LANLTNLTGLTLFNNQITDIDP-LKNLTNLN 137 (466)
T ss_dssp TTCCEEEC----CSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCS
T ss_pred cCCCEEEC----CCCccCCchh--hhccccCCEEECCCC-ccccChh--hcCCCCCCEEECCCCCCCCChH-HcCCCCCC
Confidence 34455555 7888888876 788888888888888 8887776 7778888888888888888764 57788888
Q ss_pred EEEeeCCCCc
Q psy14513 99 VLDIQSNPWT 108 (209)
Q Consensus 99 ~l~l~~Np~~ 108 (209)
+|++++|.+.
T Consensus 138 ~L~l~~n~l~ 147 (466)
T 1o6v_A 138 RLELSSNTIS 147 (466)
T ss_dssp EEEEEEEEEC
T ss_pred EEECCCCccC
Confidence 8888887654
No 127
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.37 E-value=9.9e-07 Score=78.40 Aligned_cols=88 Identities=20% Similarity=0.122 Sum_probs=51.2
Q ss_pred CCCCCCcccccCCcccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCc
Q psy14513 4 KQNSGSRQDISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNA 83 (209)
Q Consensus 4 ~~~~~~~~~~~~~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~ 83 (209)
.+....|..++ .++..|.+ ++|.|+.++. .+++|++|+|++| .++.++. .+++|++|++++|+
T Consensus 50 n~L~~lp~~l~----~~L~~L~L----~~N~l~~lp~----~l~~L~~L~Ls~N-~l~~lp~----~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 50 SGLTTLPDCLP----AHITTLVI----PDNNLTSLPA----LPPELRTLEVSGN-QLTSLPV----LPPGLLELSIFSNP 112 (622)
T ss_dssp SCCSCCCSCCC----TTCSEEEE----CSCCCSCCCC----CCTTCCEEEECSC-CCSCCCC----CCTTCCEEEECSCC
T ss_pred CCcCccChhhC----CCCcEEEe----cCCCCCCCCC----cCCCCCEEEcCCC-cCCcCCC----CCCCCCEEECcCCc
Confidence 33344444443 34555666 7777777765 3567777777777 7776665 24556666666666
Q ss_pred CcccCCCC-----------------CCCCCccEEEeeCCCCc
Q psy14513 84 ITSLPHEL-----------------GDWDSLEVLDIQSNPWT 108 (209)
Q Consensus 84 l~~l~~~~-----------------~~l~~L~~l~l~~Np~~ 108 (209)
++.+|... ..+++|++|++++|.+.
T Consensus 113 l~~l~~~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~ 154 (622)
T 3g06_A 113 LTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLA 154 (622)
T ss_dssp CCCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS
T ss_pred CCCCCCCCCCcCEEECCCCCCCcCCCCCCCCCEEECcCCcCC
Confidence 66554311 11255666666666654
No 128
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.31 E-value=2.1e-06 Score=73.38 Aligned_cols=77 Identities=21% Similarity=0.223 Sum_probs=53.0
Q ss_pred ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccE
Q psy14513 20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEV 99 (209)
Q Consensus 20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~ 99 (209)
++..|.+ ++|.++.++ .|.++++|++|++++| .++.++.. ..+|++|++++|+++.+| .+..+++|+.
T Consensus 132 ~L~~L~L----~~n~l~~lp--~~~~l~~L~~L~l~~N-~l~~lp~~----~~~L~~L~L~~n~l~~l~-~~~~l~~L~~ 199 (454)
T 1jl5_A 132 LLEYLGV----SNNQLEKLP--ELQNSSFLKIIDVDNN-SLKKLPDL----PPSLEFIAAGNNQLEELP-ELQNLPFLTA 199 (454)
T ss_dssp TCCEEEC----CSSCCSSCC--CCTTCTTCCEEECCSS-CCSCCCCC----CTTCCEEECCSSCCSSCC-CCTTCTTCCE
T ss_pred CCCEEEC----cCCCCCCCc--ccCCCCCCCEEECCCC-cCcccCCC----cccccEEECcCCcCCcCc-cccCCCCCCE
Confidence 4455555 777777766 4777888888888888 77776543 246777777777777765 4566677777
Q ss_pred EEeeCCCCc
Q psy14513 100 LDIQSNPWT 108 (209)
Q Consensus 100 l~l~~Np~~ 108 (209)
+++++|.+.
T Consensus 200 L~l~~N~l~ 208 (454)
T 1jl5_A 200 IYADNNSLK 208 (454)
T ss_dssp EECCSSCCS
T ss_pred EECCCCcCC
Confidence 777776654
No 129
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.27 E-value=3.1e-08 Score=75.12 Aligned_cols=64 Identities=23% Similarity=0.173 Sum_probs=37.1
Q ss_pred hhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccEEEeeCCCCc
Q psy14513 42 TFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWT 108 (209)
Q Consensus 42 ~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~l~l~~Np~~ 108 (209)
.|..+++|++|++++| .++.++ .|..+++|+.|++++|.++.+|.....+++|+.|++++|.+.
T Consensus 43 ~~~~l~~L~~L~ls~n-~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~ 106 (198)
T 1ds9_A 43 TLSTLKACKHLALSTN-NIEKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIA 106 (198)
T ss_dssp HHHHTTTCSEEECSEE-EESCCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECC
T ss_pred HHhcCCCCCEEECCCC-CCcccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCC
Confidence 5556666666666666 666654 444555666666666666655543344455666666665554
No 130
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.27 E-value=3.2e-06 Score=72.27 Aligned_cols=76 Identities=24% Similarity=0.328 Sum_probs=39.5
Q ss_pred ccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCCCCCCCccE
Q psy14513 20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEV 99 (209)
Q Consensus 20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~ 99 (209)
++..|.+ ++|.++.++ .|.++++|++|++++| .++.++.. ..+|+.|++++|.++.+| .+..+++|+.
T Consensus 174 ~L~~L~L----~~n~l~~l~--~~~~l~~L~~L~l~~N-~l~~l~~~----~~~L~~L~l~~n~l~~lp-~~~~l~~L~~ 241 (454)
T 1jl5_A 174 SLEFIAA----GNNQLEELP--ELQNLPFLTAIYADNN-SLKKLPDL----PLSLESIVAGNNILEELP-ELQNLPFLTT 241 (454)
T ss_dssp TCCEEEC----CSSCCSSCC--CCTTCTTCCEEECCSS-CCSSCCCC----CTTCCEEECCSSCCSSCC-CCTTCTTCCE
T ss_pred cccEEEC----cCCcCCcCc--cccCCCCCCEEECCCC-cCCcCCCC----cCcccEEECcCCcCCccc-ccCCCCCCCE
Confidence 4444555 666666654 3566666666666666 66554332 124445555555554444 2344444555
Q ss_pred EEeeCCCC
Q psy14513 100 LDIQSNPW 107 (209)
Q Consensus 100 l~l~~Np~ 107 (209)
+++++|.+
T Consensus 242 L~l~~N~l 249 (454)
T 1jl5_A 242 IYADNNLL 249 (454)
T ss_dssp EECCSSCC
T ss_pred EECCCCcC
Confidence 55554444
No 131
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.25 E-value=2.4e-07 Score=76.69 Aligned_cols=84 Identities=19% Similarity=0.288 Sum_probs=57.8
Q ss_pred cceeccccccccccccccCc----hhhcCCc-ccceecccccccccccCccccCCC-----CCcCEEeccCCcCcccCCC
Q psy14513 21 IMKVQLPYSTANSELYAIRK----NTFKNLL-NLQTLYCNFNPKLTFIHPYSFNND-----WSLKEFYINNNAITSLPHE 90 (209)
Q Consensus 21 l~~L~ll~~~s~n~l~~l~~----~~f~~l~-~L~~L~Ls~n~~l~~i~~~~f~~l-----~~L~~L~Ls~N~l~~l~~~ 90 (209)
++.|++ ++|.++.++. .+|.+++ +|++|+|++| .++...+..|... ++|+.|+|++|.++.....
T Consensus 24 L~~L~L----s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 98 (362)
T 3goz_A 24 VTSLDL----SLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD 98 (362)
T ss_dssp CCEEEC----TTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred ceEEEc----cCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence 555666 7788888777 7777777 7888888888 7777776665553 6777888888877765433
Q ss_pred -----CCCC-CCccEEEeeCCCCcc
Q psy14513 91 -----LGDW-DSLEVLDIQSNPWTC 109 (209)
Q Consensus 91 -----~~~l-~~L~~l~l~~Np~~C 109 (209)
+..+ ++|+.|++++|.+.-
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N~l~~ 123 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWNDFSS 123 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred HHHHHHHhCCCCccEEECcCCcCCc
Confidence 1223 567777777776643
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.20 E-value=2.2e-06 Score=69.92 Aligned_cols=89 Identities=21% Similarity=0.091 Sum_probs=75.5
Q ss_pred CcccccCCcccccceeccccccccccccccCchhhcCCcccc-eecccccccccccCccccCCCCCcCEEeccCCcCccc
Q psy14513 9 SRQDISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQ-TLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSL 87 (209)
Q Consensus 9 ~~~~~~~~~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~-~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l 87 (209)
....|+...|.+...|..+.+ .+| +..|++++|.++.+|+ .+++.+ .++.|++.+|.++.+|+.+++++|.++.+
T Consensus 237 ~i~~I~~~aF~~~~~L~~l~l-~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~~I 312 (329)
T 3sb4_A 237 NATTIPDFTFAQKKYLLKIKL-PHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDKITTL 312 (329)
T ss_dssp CCCEECTTTTTTCTTCCEEEC-CTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSCCCEE
T ss_pred CcceecHhhhhCCCCCCEEEC-Ccc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCccCcc
Confidence 366778888877666555433 444 9999999999999999 999987 57899999999999999999999999999
Q ss_pred CCCC-CCCCCccEEE
Q psy14513 88 PHEL-GDWDSLEVLD 101 (209)
Q Consensus 88 ~~~~-~~l~~L~~l~ 101 (209)
+... ..+++|+.+.
T Consensus 313 ~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 313 GDELFGNGVPSKLIY 327 (329)
T ss_dssp CTTTTCTTCCCCEEE
T ss_pred chhhhcCCcchhhhc
Confidence 9877 8899998875
No 133
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.14 E-value=2.3e-07 Score=73.99 Aligned_cols=78 Identities=18% Similarity=0.120 Sum_probs=59.2
Q ss_pred ccccccccC---chhhcCCcccceecccccccccccCc--cccCCCCCcCEEeccCCcCcccCCCC---CCCCCccEEEe
Q psy14513 31 ANSELYAIR---KNTFKNLLNLQTLYCNFNPKLTFIHP--YSFNNDWSLKEFYINNNAITSLPHEL---GDWDSLEVLDI 102 (209)
Q Consensus 31 s~n~l~~l~---~~~f~~l~~L~~L~Ls~n~~l~~i~~--~~f~~l~~L~~L~Ls~N~l~~l~~~~---~~l~~L~~l~l 102 (209)
+.|....++ +-...++++|+.|+|++| .|+.+++ ..+..+++|+.|+|++|+++++.. + ..+ .|+.|++
T Consensus 151 ~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~-l~~l~~l-~L~~L~L 227 (267)
T 3rw6_A 151 VLNRRSCMAATLRIIEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSERE-LDKIKGL-KLEELWL 227 (267)
T ss_dssp CTTSHHHHHHHHHHHHHHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGG-GGGGTTS-CCSEEEC
T ss_pred cCCHHHHHHHHHHHHHhhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCchh-hhhcccC-CcceEEc
Confidence 556444333 334467899999999999 9999875 455568999999999999998732 2 334 8999999
Q ss_pred eCCCCcccc
Q psy14513 103 QSNPWTCDC 111 (209)
Q Consensus 103 ~~Np~~C~C 111 (209)
.+||+.-..
T Consensus 228 ~~Npl~~~~ 236 (267)
T 3rw6_A 228 DGNSLCDTF 236 (267)
T ss_dssp TTSTTGGGC
T ss_pred cCCcCcccc
Confidence 999986543
No 134
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.09 E-value=3.7e-07 Score=76.02 Aligned_cols=96 Identities=16% Similarity=0.165 Sum_probs=64.9
Q ss_pred ccceecccccccccccc----ccCchhhcCCcccceecccccccccccC----cccc--CCCCCcCEEeccCCcCcc---
Q psy14513 20 TIMKVQLPYSTANSELY----AIRKNTFKNLLNLQTLYCNFNPKLTFIH----PYSF--NNDWSLKEFYINNNAITS--- 86 (209)
Q Consensus 20 ~l~~L~ll~~~s~n~l~----~l~~~~f~~l~~L~~L~Ls~n~~l~~i~----~~~f--~~l~~L~~L~Ls~N~l~~--- 86 (209)
+|..|.+ ++|.++ ...+..|..+++|++|+|++| .++... +..+ ..+++|+.|+|++|.++.
T Consensus 217 ~L~~L~L----s~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~ 291 (386)
T 2ca6_A 217 ELKVLDL----QDNTFTHLGSSALAIALKSWPNLRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV 291 (386)
T ss_dssp TCCEEEC----CSSCCHHHHHHHHHHHGGGCTTCCEEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHH
T ss_pred CccEEEC----cCCCCCcHHHHHHHHHHccCCCcCEEECCCC-CCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHH
Confidence 3444555 777774 223346677788888888888 776652 2233 226778888888888887
Q ss_pred --cCCCC-CCCCCccEEEeeCCCCccccC-cHhHHHHH
Q psy14513 87 --LPHEL-GDWDSLEVLDIQSNPWTCDCS-IQWLIDYV 120 (209)
Q Consensus 87 --l~~~~-~~l~~L~~l~l~~Np~~C~C~-~~~~~~~~ 120 (209)
++..+ ..+++|+.|++++|++.+... ...+...+
T Consensus 292 ~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l 329 (386)
T 2ca6_A 292 RTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVF 329 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHh
Confidence 66666 667888999999999887765 34444444
No 135
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.98 E-value=1.2e-06 Score=71.23 Aligned_cols=82 Identities=15% Similarity=0.158 Sum_probs=54.3
Q ss_pred cccceecccccccccccccc-CchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCC-cCcc--cCCCCCCC
Q psy14513 19 YTIMKVQLPYSTANSELYAI-RKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNN-AITS--LPHELGDW 94 (209)
Q Consensus 19 ~~l~~L~ll~~~s~n~l~~l-~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~--l~~~~~~l 94 (209)
.++..|.+ ++|.+... .+..+..+++|++|++++| .++...+..+..+++|++|++++| .++. ++..+..+
T Consensus 93 ~~L~~L~L----~~~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~ 167 (336)
T 2ast_B 93 FRVQHMDL----SNSVIEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 167 (336)
T ss_dssp BCCCEEEC----TTCEECHHHHHHHHTTBCCCSEEECTTC-BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHC
T ss_pred CCCCEEEc----cCCCcCHHHHHHHHhhCCCCCEEeCcCc-ccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcC
Confidence 34455555 67777654 4556777888888888888 777665666666777888888877 5653 33323556
Q ss_pred CCccEEEeeCC
Q psy14513 95 DSLEVLDIQSN 105 (209)
Q Consensus 95 ~~L~~l~l~~N 105 (209)
++|++|++++|
T Consensus 168 ~~L~~L~l~~~ 178 (336)
T 2ast_B 168 SRLDELNLSWC 178 (336)
T ss_dssp TTCCEEECCCC
T ss_pred CCCCEEcCCCC
Confidence 66777777766
No 136
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.82 E-value=3.4e-06 Score=69.69 Aligned_cols=78 Identities=13% Similarity=0.040 Sum_probs=65.9
Q ss_pred ccccccccCchhhcCCcccceecccccccccccCc----cccCCCC-CcCEEeccCCcCcccCCCC-CC-----CCCccE
Q psy14513 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHP----YSFNNDW-SLKEFYINNNAITSLPHEL-GD-----WDSLEV 99 (209)
Q Consensus 31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~----~~f~~l~-~L~~L~Ls~N~l~~l~~~~-~~-----l~~L~~ 99 (209)
+.|.++...+..+....+|++|++++| .++.+++ .+|..++ +|+.|+|++|+++...... .. .++|+.
T Consensus 6 s~n~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 84 (362)
T 3goz_A 6 TLHPGSNPVEEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTS 84 (362)
T ss_dssp CCCTTCCHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred ccccchHHHHHHHhCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccE
Confidence 889999888877777777999999999 9999998 7888888 8999999999999864332 33 389999
Q ss_pred EEeeCCCCcc
Q psy14513 100 LDIQSNPWTC 109 (209)
Q Consensus 100 l~l~~Np~~C 109 (209)
|++++|.+.-
T Consensus 85 L~Ls~n~l~~ 94 (362)
T 3goz_A 85 LNLSGNFLSY 94 (362)
T ss_dssp EECCSSCGGG
T ss_pred EECcCCcCCh
Confidence 9999999864
No 137
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.82 E-value=4e-06 Score=66.84 Aligned_cols=77 Identities=19% Similarity=0.328 Sum_probs=58.9
Q ss_pred cccceeccccccccccccccCc--hhhcCCcccceecccccccccccCc-cccCCCCCcCEEeccCCcCcc-cCC-----
Q psy14513 19 YTIMKVQLPYSTANSELYAIRK--NTFKNLLNLQTLYCNFNPKLTFIHP-YSFNNDWSLKEFYINNNAITS-LPH----- 89 (209)
Q Consensus 19 ~~l~~L~ll~~~s~n~l~~l~~--~~f~~l~~L~~L~Ls~n~~l~~i~~-~~f~~l~~L~~L~Ls~N~l~~-l~~----- 89 (209)
-+|..|.+ ++|.|+.+++ ..+..+++|+.|+|++| .++.+.. +.+.++ +|+.|+|++|.+.. +|.
T Consensus 170 ~~L~~L~L----s~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 170 PELLSLNL----SNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp TTCCEEEC----TTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHH
T ss_pred CCCCEEEC----CCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcccC-CcceEEccCCcCccccCcchhHH
Confidence 34556666 9999999874 67778999999999999 9998833 445544 89999999999986 442
Q ss_pred -CC-CCCCCccEEE
Q psy14513 90 -EL-GDWDSLEVLD 101 (209)
Q Consensus 90 -~~-~~l~~L~~l~ 101 (209)
.+ ..+++|+.||
T Consensus 244 ~~il~~~P~L~~LD 257 (267)
T 3rw6_A 244 SAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHCTTCCEES
T ss_pred HHHHHHCcccCeEC
Confidence 12 5677777764
No 138
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=97.77 E-value=6.2e-06 Score=68.55 Aligned_cols=65 Identities=22% Similarity=0.226 Sum_probs=32.1
Q ss_pred hhcCCcccceecccccccccc-----cCccccCCCCCcCEEeccCCcCc-----ccCCCCCCCCCccEEEeeCCCC
Q psy14513 42 TFKNLLNLQTLYCNFNPKLTF-----IHPYSFNNDWSLKEFYINNNAIT-----SLPHELGDWDSLEVLDIQSNPW 107 (209)
Q Consensus 42 ~f~~l~~L~~L~Ls~n~~l~~-----i~~~~f~~l~~L~~L~Ls~N~l~-----~l~~~~~~l~~L~~l~l~~Np~ 107 (209)
.|..+++|++|++++| .++. +.+..+..+++|+.|+|++|.++ .++..+..+++|+.|++++|.+
T Consensus 182 ~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i 256 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL 256 (386)
T ss_dssp HHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred HHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCC
Confidence 4445555555555555 5541 22223444555555555555552 2343334455555555555544
No 139
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.68 E-value=3.4e-06 Score=71.45 Aligned_cols=36 Identities=25% Similarity=0.326 Sum_probs=16.3
Q ss_pred CcCEEeccCCcCc-----ccCCCCCCCCCccEEEeeCCCCc
Q psy14513 73 SLKEFYINNNAIT-----SLPHELGDWDSLEVLDIQSNPWT 108 (209)
Q Consensus 73 ~L~~L~Ls~N~l~-----~l~~~~~~l~~L~~l~l~~Np~~ 108 (209)
+|+.|++++|.++ .++..+..+++|+.+++++|++.
T Consensus 371 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 371 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp CCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred ceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 4455555555444 23322233444555555555444
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.67 E-value=0.0001 Score=61.91 Aligned_cols=71 Identities=24% Similarity=0.307 Sum_probs=41.2
Q ss_pred ccccccCchhhcCCcccceeccccccccc-----ccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCC
Q psy14513 33 SELYAIRKNTFKNLLNLQTLYCNFNPKLT-----FIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSN 105 (209)
Q Consensus 33 n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~-----~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~N 105 (209)
+.++.|+..+|.++.+|+.+.+.+| .+. .|+..+|.++.+|+.+++. +.++.++... ..+.+|+.+.+..|
T Consensus 257 ~~i~~I~~~aF~~c~~L~~l~l~~~-~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 257 NGVTNIASRAFYYCPELAEVTTYGS-TFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp TTCCEECTTTTTTCTTCCEEEEESS-CCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT
T ss_pred CCccEEChhHhhCCCCCCEEEeCCc-cccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc
Confidence 4455566666666666666666555 444 4666666666666666665 3455555555 55566666666443
No 141
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.59 E-value=1.6e-05 Score=64.50 Aligned_cols=81 Identities=9% Similarity=0.086 Sum_probs=63.9
Q ss_pred ccceeccccccccccccccCchhhcCCcccceeccccccccccc-CccccCCCCCcCEEeccCCcCcc-cCCCCCCCCCc
Q psy14513 20 TIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFI-HPYSFNNDWSLKEFYINNNAITS-LPHELGDWDSL 97 (209)
Q Consensus 20 ~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i-~~~~f~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L 97 (209)
.+..|.+ ++|.+....+..+ .+++|++|++++| .++.. .+..+..+++|++|++++|.++. .+..+..+++|
T Consensus 71 ~l~~L~l----~~n~l~~~~~~~~-~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L 144 (336)
T 2ast_B 71 GVIAFRC----PRSFMDQPLAEHF-SPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNL 144 (336)
T ss_dssp TCSEEEC----TTCEECSCCCSCC-CCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTC
T ss_pred cceEEEc----CCccccccchhhc-cCCCCCEEEccCC-CcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCC
Confidence 3455666 8899988877654 6899999999999 87754 45567778999999999999885 44444679999
Q ss_pred cEEEeeCCC
Q psy14513 98 EVLDIQSNP 106 (209)
Q Consensus 98 ~~l~l~~Np 106 (209)
++|++++|.
T Consensus 145 ~~L~L~~~~ 153 (336)
T 2ast_B 145 VRLNLSGCS 153 (336)
T ss_dssp SEEECTTCB
T ss_pred CEEECCCCC
Confidence 999999983
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.59 E-value=7.1e-06 Score=68.38 Aligned_cols=84 Identities=15% Similarity=0.086 Sum_probs=53.0
Q ss_pred ccceeccccccccccccccCchhh-----cCCcccceecccccccccccCccc----cCCCCCcCEEeccCCcCccc---
Q psy14513 20 TIMKVQLPYSTANSELYAIRKNTF-----KNLLNLQTLYCNFNPKLTFIHPYS----FNNDWSLKEFYINNNAITSL--- 87 (209)
Q Consensus 20 ~l~~L~ll~~~s~n~l~~l~~~~f-----~~l~~L~~L~Ls~n~~l~~i~~~~----f~~l~~L~~L~Ls~N~l~~l--- 87 (209)
++..|++ ++|.|+......+ ...++|++|+|++| .++...... +...++|++|+|++|.++..
T Consensus 127 ~L~~L~L----s~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~ 201 (372)
T 3un9_A 127 RARKLGL----QLNSLGPEACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLE 201 (372)
T ss_dssp TEEEEEC----CSSCCCHHHHHHHHHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHH
T ss_pred hccHhhc----CCCCCCHHHHHHHHHHHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHH
Confidence 3455665 7788776655544 24567888888888 776533322 24466788888888877642
Q ss_pred --CCCCCCCCCccEEEeeCCCCc
Q psy14513 88 --PHELGDWDSLEVLDIQSNPWT 108 (209)
Q Consensus 88 --~~~~~~l~~L~~l~l~~Np~~ 108 (209)
...+...++|+.|++++|.+.
T Consensus 202 ~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 202 LLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp HHHHHGGGCSCCCEEECCSSCCC
T ss_pred HHHHHHhcCCCcCeEECCCCCCC
Confidence 222234557788888877764
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.57 E-value=0.00017 Score=60.62 Aligned_cols=93 Identities=9% Similarity=0.109 Sum_probs=71.4
Q ss_pred cccccCCcccccceecccccccccccc-----ccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcC
Q psy14513 10 RQDISYDTQYTIMKVQLPYSTANSELY-----AIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAI 84 (209)
Q Consensus 10 ~~~~~~~~~~~l~~L~ll~~~s~n~l~-----~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l 84 (209)
...|....|.....|..+.+ .+|.+. .+++++|.++.+|+.+++. + .++.|...+|.++.+|+.++|..| +
T Consensus 259 i~~I~~~aF~~c~~L~~l~l-~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~-~i~~I~~~aF~~c~~L~~l~lp~~-l 334 (401)
T 4fdw_A 259 VTNIASRAFYYCPELAEVTT-YGSTFNDDPEAMIHPYCLEGCPKLARFEIP-E-SIRILGQGLLGGNRKVTQLTIPAN-V 334 (401)
T ss_dssp CCEECTTTTTTCTTCCEEEE-ESSCCCCCTTCEECTTTTTTCTTCCEECCC-T-TCCEECTTTTTTCCSCCEEEECTT-C
T ss_pred ccEEChhHhhCCCCCCEEEe-CCccccCCcccEECHHHhhCCccCCeEEeC-C-ceEEEhhhhhcCCCCccEEEECcc-c
Confidence 44566666665554444322 444444 7999999999999999998 6 689999999999999999999654 8
Q ss_pred cccCCCC-CCCCCccEEEeeCCCC
Q psy14513 85 TSLPHEL-GDWDSLEVLDIQSNPW 107 (209)
Q Consensus 85 ~~l~~~~-~~l~~L~~l~l~~Np~ 107 (209)
+.+.... ..+ +|+.+.+.+|..
T Consensus 335 ~~I~~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 335 TQINFSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp CEECTTSSSSS-CCCEEEECCSSC
T ss_pred cEEcHHhCCCC-CCCEEEEcCCCC
Confidence 8887776 777 999999988754
No 144
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.54 E-value=8.7e-05 Score=52.49 Aligned_cols=50 Identities=16% Similarity=0.101 Sum_probs=37.4
Q ss_pred cccccc--ccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcC
Q psy14513 31 ANSELY--AIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAI 84 (209)
Q Consensus 31 s~n~l~--~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l 84 (209)
+++.++ .+|.+. -.+|++|+|++| .|+.++++.|..+++|+.|+|++|.+
T Consensus 16 s~~~L~~~~vP~~l---p~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 16 GRRGLTWASLPTAF---PVDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp CSSCCCTTTSCSCC---CTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCCCccccCCCCC---CcCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCe
Confidence 677777 676542 235778888888 88888888888888888888888865
No 145
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.52 E-value=1.2e-05 Score=67.98 Aligned_cols=44 Identities=23% Similarity=0.222 Sum_probs=19.7
Q ss_pred hhcCCcccceecccccccccccC-----ccccCCCCCcCEEeccCCcCcc
Q psy14513 42 TFKNLLNLQTLYCNFNPKLTFIH-----PYSFNNDWSLKEFYINNNAITS 86 (209)
Q Consensus 42 ~f~~l~~L~~L~Ls~n~~l~~i~-----~~~f~~l~~L~~L~Ls~N~l~~ 86 (209)
.+..+++|++|++++| .++... +..+..+++|+.|++++|.++.
T Consensus 222 ~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~ 270 (461)
T 1z7x_W 222 IVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWECGITA 270 (461)
T ss_dssp HHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred HHHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcCCCCCH
Confidence 3344455555555555 444321 2222224445555555555444
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.20 E-value=4.9e-05 Score=63.27 Aligned_cols=84 Identities=19% Similarity=0.201 Sum_probs=46.1
Q ss_pred ccceeccccccccccccccCchhh-cCCcccceecccccccccccCcccc-----CCCCCcCEEeccCCcCcc-----cC
Q psy14513 20 TIMKVQLPYSTANSELYAIRKNTF-KNLLNLQTLYCNFNPKLTFIHPYSF-----NNDWSLKEFYINNNAITS-----LP 88 (209)
Q Consensus 20 ~l~~L~ll~~~s~n~l~~l~~~~f-~~l~~L~~L~Ls~n~~l~~i~~~~f-----~~l~~L~~L~Ls~N~l~~-----l~ 88 (209)
++..|++ ++|.|+......+ ..+.+|++|+|++| .++......+ ....+|+.|+|++|.++. +.
T Consensus 102 ~L~~L~L----s~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~ 176 (372)
T 3un9_A 102 ALDEVNL----ASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLM 176 (372)
T ss_dssp CEEEEEC----TTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHH
T ss_pred CceEEEe----cCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHH
Confidence 3445555 6666655433222 23556777777777 6655433332 223557777777777654 21
Q ss_pred CCCCCCCCccEEEeeCCCCc
Q psy14513 89 HELGDWDSLEVLDIQSNPWT 108 (209)
Q Consensus 89 ~~~~~l~~L~~l~l~~Np~~ 108 (209)
..+...++|++|+|++|.+.
T Consensus 177 ~~L~~~~~L~~L~Ls~N~l~ 196 (372)
T 3un9_A 177 EGLAGNTSVTHLSLLHTGLG 196 (372)
T ss_dssp HHHHTCSSCCEEECTTSSCH
T ss_pred HHHhcCCCcCEEeCCCCCCC
Confidence 11234566777777777654
No 147
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.14 E-value=0.00083 Score=55.89 Aligned_cols=70 Identities=13% Similarity=0.117 Sum_probs=60.1
Q ss_pred ccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCC
Q psy14513 33 SELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSN 105 (209)
Q Consensus 33 n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~N 105 (209)
+.+..|.+.+|.++.+|+.+++. + .++.|...+|.++.+|+.+++..| ++.+.... ..+.+|+.+.+..+
T Consensus 306 ~~i~~I~~~aF~~c~~L~~i~lp-~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 306 DSVKFIGEEAFESCTSLVSIDLP-Y-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTCCEECTTTTTTCTTCCEECCC-T-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred cccceechhhhcCCCCCCEEEeC-C-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 56888999999999999999996 4 588899999999999999999876 88888777 88899999988654
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.07 E-value=0.0011 Score=55.10 Aligned_cols=70 Identities=16% Similarity=0.273 Sum_probs=48.3
Q ss_pred ccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCC
Q psy14513 33 SELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSN 105 (209)
Q Consensus 33 n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~N 105 (209)
+.+..|+..+|.++.+|+.+++.++ ++.|...+|.++.+|+.+.+..+ ++.+.... ..+.+|+.+++.+|
T Consensus 297 ~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 297 SRITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred CcccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 5667777777777777777777543 66777777777777777777543 66666555 66777777777665
No 149
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.02 E-value=0.00092 Score=55.15 Aligned_cols=70 Identities=19% Similarity=0.182 Sum_probs=47.4
Q ss_pred cccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeCC
Q psy14513 34 ELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSN 105 (209)
Q Consensus 34 ~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~N 105 (209)
.++.+...+|.+..+|+.+.+.. .+..++..+|.++.+|+.+.+.++.++.++... ..+.+|+.+.+..+
T Consensus 250 ~v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 250 NVTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA 320 (379)
T ss_dssp TCCEECTTTTTTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred CccEeCccccceeehhccccccc--cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc
Confidence 46677777777777777776643 456677777777777777777777777776655 66667777766443
No 150
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.81 E-value=0.00036 Score=51.92 Aligned_cols=94 Identities=14% Similarity=0.113 Sum_probs=64.1
Q ss_pred CcccccCC--cccccceeccccccccccccccCchhhcCCcccceecccccccccccCccccCCC----CCcCEEeccCC
Q psy14513 9 SRQDISYD--TQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNND----WSLKEFYINNN 82 (209)
Q Consensus 9 ~~~~~~~~--~~~~l~~L~ll~~~s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l----~~L~~L~Ls~N 82 (209)
+...+|.. ....+..|++ +++.|+...-..+.++++|++|+|++++.++.-.-.....+ ++|++|+|+++
T Consensus 49 ~~~~LP~~~~~~~~L~~LDL----s~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C 124 (176)
T 3e4g_A 49 DYNHLPTGPLDKYKIQAIDA----TDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISC 124 (176)
T ss_dssp CGGGSCCCSTTCCCEEEEEE----ESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESC
T ss_pred ccccCCcccCCCceEeEEeC----cCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCC
Confidence 34455543 3456677777 88888887767778999999999999944544333333332 36999999997
Q ss_pred c-Ccc--cCCCCCCCCCccEEEeeCCCC
Q psy14513 83 A-ITS--LPHELGDWDSLEVLDIQSNPW 107 (209)
Q Consensus 83 ~-l~~--l~~~~~~l~~L~~l~l~~Np~ 107 (209)
. ++- +. .+..+++|+.|++++.|-
T Consensus 125 ~~ITD~Gl~-~L~~~~~L~~L~L~~c~~ 151 (176)
T 3e4g_A 125 GNVTDKGII-ALHHFRNLKYLFLSDLPG 151 (176)
T ss_dssp TTCCHHHHH-HGGGCTTCCEEEEESCTT
T ss_pred CcCCHHHHH-HHhcCCCCCEEECCCCCC
Confidence 4 654 21 125689999999987543
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.48 E-value=0.00024 Score=53.11 Aligned_cols=86 Identities=20% Similarity=0.154 Sum_probs=59.3
Q ss_pred ccceeccccccccc-cccccC----chhhcCCcccceecccccccccccCc----cccCCCCCcCEEeccCCcCcc----
Q psy14513 20 TIMKVQLPYSTANS-ELYAIR----KNTFKNLLNLQTLYCNFNPKLTFIHP----YSFNNDWSLKEFYINNNAITS---- 86 (209)
Q Consensus 20 ~l~~L~ll~~~s~n-~l~~l~----~~~f~~l~~L~~L~Ls~n~~l~~i~~----~~f~~l~~L~~L~Ls~N~l~~---- 86 (209)
++..|.+ ++| .|.... ...+...++|++|+|++| .+..-.. .++....+|++|+|++|.++.
T Consensus 37 ~L~~L~L----~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 37 DLEEVNL----NNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp TCCEEEC----TTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred CCCEEEe----cCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 4556666 788 887643 344556788999999999 7765322 223335679999999999876
Q ss_pred -cCCCCCCCCCccEEEe--eCCCCccc
Q psy14513 87 -LPHELGDWDSLEVLDI--QSNPWTCD 110 (209)
Q Consensus 87 -l~~~~~~l~~L~~l~l--~~Np~~C~ 110 (209)
+...+...++|++|++ ++|.+..+
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~ 138 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNN 138 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHH
Confidence 2333355678999999 78888654
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.41 E-value=0.00037 Score=52.02 Aligned_cols=70 Identities=19% Similarity=0.150 Sum_probs=43.5
Q ss_pred chhhcCCcccceecccccccccccC----ccccCCCCCcCEEeccCCcCcc-----cCCCCCCCCCccEEEeeCCCCcc
Q psy14513 40 KNTFKNLLNLQTLYCNFNPKLTFIH----PYSFNNDWSLKEFYINNNAITS-----LPHELGDWDSLEVLDIQSNPWTC 109 (209)
Q Consensus 40 ~~~f~~l~~L~~L~Ls~n~~l~~i~----~~~f~~l~~L~~L~Ls~N~l~~-----l~~~~~~l~~L~~l~l~~Np~~C 109 (209)
...+...++|++|+|++|+.+..-. ..++....+|++|+|++|.++. +...+...++|++|+|++|.+.-
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 4456667788888888873343311 1223445678888888888764 11112344678888888887653
No 153
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.29 E-value=0.0004 Score=60.46 Aligned_cols=73 Identities=11% Similarity=-0.012 Sum_probs=50.5
Q ss_pred cccccCchhhcC-CcccceecccccccccccCcccc-CCCCCcCEEeccCCcCcccC-CCC-CCCCCccEEEeeCCCC
Q psy14513 34 ELYAIRKNTFKN-LLNLQTLYCNFNPKLTFIHPYSF-NNDWSLKEFYINNNAITSLP-HEL-GDWDSLEVLDIQSNPW 107 (209)
Q Consensus 34 ~l~~l~~~~f~~-l~~L~~L~Ls~n~~l~~i~~~~f-~~l~~L~~L~Ls~N~l~~l~-~~~-~~l~~L~~l~l~~Np~ 107 (209)
.++......+.. +++|+.|++++| .++......+ .++++|+.|++++|.++... ... ..+++|+.|++++|+.
T Consensus 442 ~l~~~~~~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 442 LLTDKVFEYIGTYAKKMEMLSVAFA-GDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp SCCHHHHHHHHHHCTTCCEEEEESC-CSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred cccHHHHHHHHHhchhccEeeccCC-CCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 444443333333 778999999999 7755444333 44788999999999985422 223 6688999999999887
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.19 E-value=0.012 Score=48.25 Aligned_cols=68 Identities=9% Similarity=0.129 Sum_probs=43.8
Q ss_pred ccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEe
Q psy14513 33 SELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDI 102 (209)
Q Consensus 33 n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l 102 (209)
+.+..++..+|.++.+|+.+.+.++ .++.|+..+|.++.+|+.+.|..+ ++.+.... ..+.+|+.+.+
T Consensus 272 ~~i~~i~~~aF~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 272 AKVKTVPYLLCSGCSNLTKVVMDNS-AIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp CCCSEECTTTTTTCTTCCEEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred ccceecccccccccccccccccccc-ccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence 4566666677777777777777666 677777777776677777776543 55565544 55556655544
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.71 E-value=0.0074 Score=50.06 Aligned_cols=64 Identities=13% Similarity=0.193 Sum_probs=44.5
Q ss_pred cccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEE
Q psy14513 34 ELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVL 100 (209)
Q Consensus 34 ~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l 100 (209)
+++.|...+|.++.+|+.+.+. + .++.|...+|.++.+|+.+++.++ ++.+.... ..+..|+.+
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp-~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i 122 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIP-S-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSI 122 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECC-T-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCC
T ss_pred eEeEhHHHHhhCCCCceEEEeC-C-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhh
Confidence 5677788888888888888775 4 477788888887788888887654 56665544 555555443
No 156
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=95.67 E-value=0.0011 Score=57.62 Aligned_cols=62 Identities=10% Similarity=0.024 Sum_probs=32.3
Q ss_pred CCcccceecccccccccccCcc----ccCCCCCcCEEeccCCcCcccC-----CCCCCCCCccEEEeeCCCC
Q psy14513 45 NLLNLQTLYCNFNPKLTFIHPY----SFNNDWSLKEFYINNNAITSLP-----HELGDWDSLEVLDIQSNPW 107 (209)
Q Consensus 45 ~l~~L~~L~Ls~n~~l~~i~~~----~f~~l~~L~~L~Ls~N~l~~l~-----~~~~~l~~L~~l~l~~Np~ 107 (209)
++++|++|+|++| .+...... .+..+++|+.|++++|.++.+. .....+++|+.|++++|.+
T Consensus 162 ~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~ 232 (592)
T 3ogk_B 162 HCRKIKTLLMEES-SFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI 232 (592)
T ss_dssp HCTTCSEEECTTC-EEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG
T ss_pred hCCCCCEEECccc-cccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH
Confidence 5566666666666 55433221 2223455666666666665221 1113456666666666443
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.66 E-value=0.035 Score=45.94 Aligned_cols=69 Identities=25% Similarity=0.301 Sum_probs=40.6
Q ss_pred ccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeC
Q psy14513 33 SELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQS 104 (209)
Q Consensus 33 n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~ 104 (209)
+.+..+...+|.++..|+.+.+. + .+..|+..+|.++.+|+.+++..+ ++.+.... ..+.+|+.+.+..
T Consensus 274 ~~~~~I~~~aF~~c~~L~~i~l~-~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~ 343 (394)
T 4gt6_A 274 DSVVSIGTGAFMNCPALQDIEFS-S-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPS 343 (394)
T ss_dssp TTCCEECTTTTTTCTTCCEEECC-T-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECT
T ss_pred cccceecCcccccccccccccCC-C-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECc
Confidence 34445566666666666666663 3 456666666666666666666543 55555544 5566666666643
No 158
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=95.27 E-value=0.0037 Score=54.28 Aligned_cols=83 Identities=12% Similarity=0.091 Sum_probs=40.4
Q ss_pred ccceeccccccccccccccCchhhc-CCcccceeccccccccccc-CccccCCCCCcCEEeccCCcCcccCC----CC-C
Q psy14513 20 TIMKVQLPYSTANSELYAIRKNTFK-NLLNLQTLYCNFNPKLTFI-HPYSFNNDWSLKEFYINNNAITSLPH----EL-G 92 (209)
Q Consensus 20 ~l~~L~ll~~~s~n~l~~l~~~~f~-~l~~L~~L~Ls~n~~l~~i-~~~~f~~l~~L~~L~Ls~N~l~~l~~----~~-~ 92 (209)
++..|.+ ++|.++......+. .+++|++|++++|..++.. .+..+..+++|++|++++|.++.... .+ .
T Consensus 106 ~L~~L~L----~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 106 WLEEIRL----KRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp TCCEEEE----ESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred CCCeEEe----eCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 3444555 55655554444443 4566666666666223221 11122235666666666666443211 11 3
Q ss_pred CCCCccEEEeeCCC
Q psy14513 93 DWDSLEVLDIQSNP 106 (209)
Q Consensus 93 ~l~~L~~l~l~~Np 106 (209)
.+++|+.|++++|.
T Consensus 182 ~~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 182 TYTSLVSLNISCLA 195 (594)
T ss_dssp TCCCCCEEECTTCC
T ss_pred cCCcCcEEEecccC
Confidence 44556666665543
No 159
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=95.03 E-value=0.018 Score=49.89 Aligned_cols=39 Identities=10% Similarity=0.069 Sum_probs=22.8
Q ss_pred ccceeccccccccccccccCc----hhhcCCcccceeccccccccccc
Q psy14513 20 TIMKVQLPYSTANSELYAIRK----NTFKNLLNLQTLYCNFNPKLTFI 63 (209)
Q Consensus 20 ~l~~L~ll~~~s~n~l~~l~~----~~f~~l~~L~~L~Ls~n~~l~~i 63 (209)
+|..|.+ ++|.++.+.. ..+.++++|+.|++++| .+..+
T Consensus 193 ~L~~L~L----~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l 235 (592)
T 3ogk_B 193 SLEVLNF----YMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILEL 235 (592)
T ss_dssp CCCEEEC----TTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGG
T ss_pred CccEEEe----eccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHH
Confidence 4455555 6677763332 23345677777777777 65543
No 160
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=93.31 E-value=0.22 Score=33.04 Aligned_cols=54 Identities=9% Similarity=0.159 Sum_probs=45.5
Q ss_pred ccccccccCchhhcCCcccceecccccccccccCccccCCCCCcCEEeccCCcCcc
Q psy14513 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITS 86 (209)
Q Consensus 31 s~n~l~~l~~~~f~~l~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~ 86 (209)
.+..++.|...+|.++.+|+.+.+-.+ ++.|...+|.+..+|+.+.+.+.....
T Consensus 4 ~g~~vt~I~~~aF~~c~~L~~i~iP~~--v~~Ig~~aF~~C~~L~~i~~~~~~P~~ 57 (100)
T 2lz0_A 4 EGEPVVGMDKSLFAGNTVIREITVQPN--IGLLYDGMFSGCTALEKLILTGEDPSA 57 (100)
T ss_dssp CCCCCCSSCSCTTTTCTTCCCEEECTT--SSCCCTTSSTTCTTCCCEEECCSCGGG
T ss_pred CCCccCEecHHHhcCCCCCcEEEcCCc--hheEcHHHHhccCCccEEEEcCCCCCe
Confidence 357889999999999999999988765 688999999999999999887655433
No 161
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=92.70 E-value=0.012 Score=48.72 Aligned_cols=37 Identities=19% Similarity=0.074 Sum_probs=19.5
Q ss_pred CCCcCEEeccCCcCcc-cCCCC---CCCCCccEEEeeCCCC
Q psy14513 71 DWSLKEFYINNNAITS-LPHEL---GDWDSLEVLDIQSNPW 107 (209)
Q Consensus 71 l~~L~~L~Ls~N~l~~-l~~~~---~~l~~L~~l~l~~Np~ 107 (209)
.++|++|+|++|.++. ....+ ..+++|+.|+|+.|.+
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L 291 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL 291 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence 4556666666666543 11111 2355666666666544
No 162
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=90.83 E-value=0.071 Score=43.98 Aligned_cols=63 Identities=14% Similarity=0.071 Sum_probs=45.6
Q ss_pred CCcccceecccccccccccCccc-c--CCCCCcCEEeccCCcCcc-----cCCCCCCCCCccEEEeeCCCCc
Q psy14513 45 NLLNLQTLYCNFNPKLTFIHPYS-F--NNDWSLKEFYINNNAITS-----LPHELGDWDSLEVLDIQSNPWT 108 (209)
Q Consensus 45 ~l~~L~~L~Ls~n~~l~~i~~~~-f--~~l~~L~~L~Ls~N~l~~-----l~~~~~~l~~L~~l~l~~Np~~ 108 (209)
..++|+.|+|.+| .+..-...+ + ..+++|+.|+|+.|.++. +...+..+++|+.|+++.|++.
T Consensus 250 ~~p~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 250 RFPNLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp TCTTCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCCcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 4689999999999 766321111 1 236789999999999876 3333346789999999988654
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.55 E-value=0.093 Score=39.51 Aligned_cols=64 Identities=11% Similarity=0.053 Sum_probs=36.3
Q ss_pred hhhcCCcccceecccccccccccCcccc----CCCCCcCEEeccCCcCcc-----cCCCCCCCCCccEEEeeCC
Q psy14513 41 NTFKNLLNLQTLYCNFNPKLTFIHPYSF----NNDWSLKEFYINNNAITS-----LPHELGDWDSLEVLDIQSN 105 (209)
Q Consensus 41 ~~f~~l~~L~~L~Ls~n~~l~~i~~~~f----~~l~~L~~L~Ls~N~l~~-----l~~~~~~l~~L~~l~l~~N 105 (209)
.++..-+.|+.|+|++| .|..-...++ .....|+.|+|++|.++. +-..+..-..|+.|+|++|
T Consensus 64 ~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 64 EAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 34445566777777777 6654333222 234557777777777764 1112233345777777653
No 164
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=88.87 E-value=0.097 Score=38.68 Aligned_cols=59 Identities=12% Similarity=0.007 Sum_probs=41.2
Q ss_pred cccceecccccccccccCccccCCCCCcCEEeccCCc-CcccCC-CCCCC----CCccEEEeeCCC
Q psy14513 47 LNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNA-ITSLPH-ELGDW----DSLEVLDIQSNP 106 (209)
Q Consensus 47 ~~L~~L~Ls~n~~l~~i~~~~f~~l~~L~~L~Ls~N~-l~~l~~-~~~~l----~~L~~l~l~~Np 106 (209)
-.|++||++++ .++...-..+.++++|+.|+|+++. ++---- .+..+ ++|++|+|++++
T Consensus 61 ~~L~~LDLs~~-~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~ 125 (176)
T 3e4g_A 61 YKIQAIDATDS-CIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCG 125 (176)
T ss_dssp CCEEEEEEESC-CCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCT
T ss_pred ceEeEEeCcCC-CccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCC
Confidence 36899999999 7777666666778889999999885 442110 11222 478999998743
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=78.31 E-value=4.1 Score=26.74 Aligned_cols=51 Identities=18% Similarity=0.231 Sum_probs=41.4
Q ss_pred cccccCccccCCCCCcCEEeccCCcCcccCCCC-CCCCCccEEEeeC-CCCccc
Q psy14513 59 KLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQS-NPWTCD 110 (209)
Q Consensus 59 ~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~l~l~~-Np~~C~ 110 (209)
.++.|...+|.+..+|+.+.+-.+ ++.+.... ..+.+|+.+.+.+ ||-.|.
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~~P~~~~ 59 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGEDPSAYS 59 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCSCGGGCC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCCCCCeEe
Confidence 788999999999999999998764 66676655 8889999999865 676653
No 166
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=74.37 E-value=5.7 Score=23.98 Aligned_cols=10 Identities=10% Similarity=0.192 Sum_probs=4.6
Q ss_pred HHHhhhhccC
Q psy14513 197 CMSYKYARNH 206 (209)
Q Consensus 197 ~~~~~~~r~~ 206 (209)
+.+.+++||.
T Consensus 31 cvkcrhRrrq 40 (70)
T 2klu_A 31 SVRSRHRRRQ 40 (70)
T ss_dssp HHHSSCCSSS
T ss_pred hhHHHHHHHH
Confidence 4444444443
No 167
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=69.35 E-value=3.6 Score=22.02 Aligned_cols=16 Identities=6% Similarity=0.085 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q psy14513 179 PLLFIMTLLLITLVVY 194 (209)
Q Consensus 179 ~~~~~~~~~~~~~~~~ 194 (209)
++..++.+++++.+++
T Consensus 17 VvG~v~gv~li~~l~~ 32 (38)
T 2k1k_A 17 IFGLLLGAALLLGILV 32 (38)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHHHHH
Confidence 3333333343444333
No 168
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=68.21 E-value=11 Score=21.75 Aligned_cols=13 Identities=8% Similarity=-0.118 Sum_probs=6.3
Q ss_pred HHHHHHHhhhhcc
Q psy14513 193 VYLICMSYKYARN 205 (209)
Q Consensus 193 ~~~~~~~~~~~r~ 205 (209)
+.+-+..++|+++
T Consensus 29 ~LwK~GFFKR~~~ 41 (54)
T 2l8s_A 29 ALWKIGFFKRPLK 41 (54)
T ss_dssp HHHHHHHTTSCCS
T ss_pred HHHHcCcccCCCc
Confidence 3344455555544
No 169
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=67.93 E-value=2.2 Score=31.95 Aligned_cols=82 Identities=22% Similarity=0.122 Sum_probs=52.5
Q ss_pred ccceeccccccccccccccCc----hhhcCCcccceecccccccccccCcc----ccCCCCCcCEEeccCCcC---cc--
Q psy14513 20 TIMKVQLPYSTANSELYAIRK----NTFKNLLNLQTLYCNFNPKLTFIHPY----SFNNDWSLKEFYINNNAI---TS-- 86 (209)
Q Consensus 20 ~l~~L~ll~~~s~n~l~~l~~----~~f~~l~~L~~L~Ls~n~~l~~i~~~----~f~~l~~L~~L~Ls~N~l---~~-- 86 (209)
++..|.+ ++|.|..... .++..=..|++|+|++| .|..-... ++.....|+.|+|++|.. ..
T Consensus 71 ~L~~L~L----~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g 145 (197)
T 1pgv_A 71 HIEKFSL----ANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV 145 (197)
T ss_dssp CCCEEEC----TTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred CcCEEEc----cCCCCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHH
Confidence 4566777 8898886543 34445577999999999 87753322 344456799999986533 31
Q ss_pred ---cCCCCCCCCCccEEEeeCCC
Q psy14513 87 ---LPHELGDWDSLEVLDIQSNP 106 (209)
Q Consensus 87 ---l~~~~~~l~~L~~l~l~~Np 106 (209)
+-..+..-++|..++++.|.
T Consensus 146 ~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 146 EMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHHhCCCcCeEeccCCC
Confidence 11111334578888887553
No 170
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=67.59 E-value=12 Score=20.49 Aligned_cols=21 Identities=14% Similarity=0.325 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q psy14513 183 IMTLLLITLVVYLICMSYKYA 203 (209)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~ 203 (209)
++++.+++++++.++..-+.|
T Consensus 20 ivliGl~lLliwk~~~~i~Dr 40 (43)
T 2k9j_B 20 ILLIGLAALLIWKLLITIHDR 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHheehh
Confidence 333444444445444444433
No 171
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=66.91 E-value=9.6 Score=21.05 Aligned_cols=12 Identities=17% Similarity=0.293 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q psy14513 179 PLLFIMTLLLIT 190 (209)
Q Consensus 179 ~~~~~~~~~~~~ 190 (209)
++..+.++++++
T Consensus 17 VVgGv~~~~ii~ 28 (44)
T 2ks1_B 17 MVGALLLLLVVA 28 (44)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 333333333333
No 172
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=66.68 E-value=14 Score=21.38 Aligned_cols=14 Identities=14% Similarity=0.064 Sum_probs=6.9
Q ss_pred HHHHHHHHhhhhcc
Q psy14513 192 VVYLICMSYKYARN 205 (209)
Q Consensus 192 ~~~~~~~~~~~~r~ 205 (209)
.+.+-+..++|++.
T Consensus 31 ~~LwK~GFFkR~~~ 44 (54)
T 2knc_A 31 LAMWKVGFFKRNRP 44 (54)
T ss_dssp HHHHHHHHTTTTCC
T ss_pred HHHHHcCcccCCCC
Confidence 33444555555554
No 173
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=47.19 E-value=16 Score=18.73 Aligned_cols=20 Identities=25% Similarity=0.306 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q psy14513 177 LYPLLFIMTLLLITLVVYLI 196 (209)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~ 196 (209)
.+++.-+.+.+++++++|++
T Consensus 11 GIVvgdi~~t~~i~~~vy~~ 30 (33)
T 2l34_A 11 GIVVGDLVLTVLIALAVYFL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred eEeHHHHHHHHHHHHHHhhe
Confidence 33444454555555555554
No 174
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=36.81 E-value=46 Score=17.19 Aligned_cols=18 Identities=6% Similarity=0.076 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHhhh
Q psy14513 185 TLLLITLVVYLICMSYKY 202 (209)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~ 202 (209)
+++++++..-+.+||-++
T Consensus 17 ~vif~~lg~tflywrgrr 34 (40)
T 2l9u_A 17 VVIFMMLGGTFLYWRGRR 34 (40)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCceeEEEcccc
Confidence 344444444455554433
No 175
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=36.68 E-value=52 Score=17.82 Aligned_cols=7 Identities=0% Similarity=-0.515 Sum_probs=2.8
Q ss_pred hhhHHHH
Q psy14513 175 YKLYPLL 181 (209)
Q Consensus 175 ~~~~~~~ 181 (209)
.|+++..
T Consensus 10 ~wiIi~s 16 (42)
T 2k1a_A 10 IWWVLVG 16 (42)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 3444333
No 176
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=33.90 E-value=56 Score=17.36 Aligned_cols=20 Identities=5% Similarity=-0.089 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy14513 179 PLLFIMTLLLITLVVYLICM 198 (209)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~ 198 (209)
++.++..++..++++.|..+
T Consensus 16 I~~vmaGiIG~IllI~y~I~ 35 (40)
T 1afo_A 16 IFGVMAGVIGTILLISYGIR 35 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444433
No 177
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=33.28 E-value=71 Score=18.35 Aligned_cols=31 Identities=16% Similarity=0.201 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Q psy14513 177 LYPLLFIMTLLLITLVVYLICMSYKYARNHV 207 (209)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 207 (209)
++++..+++.+++..++.+..++..--+|..
T Consensus 10 WiIi~svl~GLLLL~Lii~~LwK~GFFKR~~ 40 (54)
T 2l8s_A 10 WVILLSAFAGLLLLMLLILALWKIGFFKRPL 40 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccCCC
Confidence 3444555566666666677777766666654
No 178
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=31.51 E-value=72 Score=21.87 Aligned_cols=27 Identities=11% Similarity=0.061 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy14513 179 PLLFIMTLLLITLVVYLICMSYKYARN 205 (209)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~r~ 205 (209)
+++++...+++.+.+.|+|-+++.++.
T Consensus 58 ~vmgffgff~~GImLsYiRSKk~E~s~ 84 (138)
T 2k21_A 58 MVLGFFGFFTLGIMLSYIRSKKLEHSN 84 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHhHhhhccccC
Confidence 444455556666666777776665554
No 179
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=20.78 E-value=84 Score=14.96 Aligned_cols=12 Identities=8% Similarity=0.243 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q psy14513 185 TLLLITLVVYLI 196 (209)
Q Consensus 185 ~~~~~~~~~~~~ 196 (209)
+.+..+++.|.|
T Consensus 13 iav~aaVllylW 24 (26)
T 3j1r_A 13 IAVAAAVLLYTW 24 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333344444443
Done!