RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14513
(209 letters)
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 86.0 bits (213), Expect = 5e-20
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 4/117 (3%)
Query: 34 ELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LG 92
IR +F L +L+ L+ + +++ I +F+ SL E + +N ++SLPH+
Sbjct: 229 HFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFT 287
Query: 93 DWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLS 149
L L + NPW CDC I WL ++ R+ C P+ +L+
Sbjct: 288 PLRYLVELHLHHNPWNCDCDILWLAWWL--REYIPTNSTCCGRCHAPMHMRGRYLVE 342
Score = 50.9 bits (122), Expect = 7e-08
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 38 IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGDWDS 96
I+ +TF++L +L+ L N + I +FN SL + +N +T +P
Sbjct: 90 IQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSK 148
Query: 97 LEVLDIQSNP 106
L L +++NP
Sbjct: 149 LRELWLRNNP 158
Score = 49.4 bits (118), Expect = 2e-07
Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Query: 35 LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDW 94
+ +I F + +L L KL +I +F ++LK + I +P+ L
Sbjct: 159 IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPL 217
Query: 95 DSLEVLDIQSNP 106
LE L++ N
Sbjct: 218 VGLEELEMSGNH 229
Score = 45.5 bits (108), Expect = 4e-06
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 38 IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGDWDS 96
I F L +L TL N LT I +F L+E ++ NN I S+P S
Sbjct: 114 IEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPS 172
Query: 97 LEVLDIQSN 105
L LD+
Sbjct: 173 LMRLDLGEL 181
Score = 44.7 bits (106), Expect = 7e-06
Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 3/74 (4%)
Query: 34 ELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYI-NNNAITSLPHE-L 91
L I F+ L L+ L+ N + I Y+FN SL + + +
Sbjct: 134 WLTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF 192
Query: 92 GDWDSLEVLDIQSN 105
+L+ L++
Sbjct: 193 EGLFNLKYLNLGMC 206
Score = 37.4 bits (87), Expect = 0.002
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 48 NLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGDWDSLEVLDIQSN 105
N + L N + I +F + L+ + N+I + SL L++ N
Sbjct: 76 NTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 85.2 bits (210), Expect = 6e-20
Identities = 28/124 (22%), Positives = 47/124 (37%), Gaps = 1/124 (0%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL 91
L + + L L+ L + L F+ P +F+ L ++ NA+ SL +
Sbjct: 41 QQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKT 99
Query: 92 GDWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNP 151
SL+ L + NP C C+++WL + + PE H P+ P
Sbjct: 100 VQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPNASCGVP 159
Query: 152 LLSH 155
L
Sbjct: 160 TLKV 163
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 85.9 bits (213), Expect = 7e-20
Identities = 28/143 (19%), Positives = 53/143 (37%), Gaps = 6/143 (4%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL 91
+ + I + LL LQ + +L + PY+F L+ ++ N +T+L +
Sbjct: 257 YNPISTIEGSMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESV 315
Query: 92 -GDWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSN 150
+LE L + SNP CDC + W+ + C+ P
Sbjct: 316 FHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQ----QPTCATPEFVQGKEFKDF 371
Query: 151 PLLSHISGECVKGALVISQLSTQ 173
P + + + A + + + Q
Sbjct: 372 PDVLLPNYFTCRRARIRDRKAQQ 394
Score = 53.6 bits (129), Expect = 9e-09
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 35 LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGD 93
L I F L NL L + N K+ + Y F + ++LK + +N + + H
Sbjct: 92 LKLIPLGVFTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150
Query: 94 WDSLEVLDIQSN 105
+SLE L ++
Sbjct: 151 LNSLEQLTLEKC 162
Score = 50.1 bits (120), Expect = 1e-07
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL 91
+ + A+ F NL NL+TL N +L I F +L + I+ N I L +
Sbjct: 65 ENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISENKIVILLDYM 123
Query: 92 -GDWDSLEVLDIQSNP 106
D +L+ L++ N
Sbjct: 124 FQDLYNLKSLEVGDND 139
Score = 49.7 bits (119), Expect = 2e-07
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE 90
+ + AIR +FK L L+ L + P L + P +L I + +T++P+
Sbjct: 184 RHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLTAVPYL 242
Query: 91 -LGDWDSLEVLDIQSNPWT 108
+ L L++ NP +
Sbjct: 243 AVRHLVYLRFLNLSYNPIS 261
Score = 48.9 bits (117), Expect = 3e-07
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 38 IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGDWDS 96
+ ++ F + +L+ L N N ++ + P +FNN ++L+ + +N + +P +
Sbjct: 47 LNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSN 105
Query: 97 LEVLDIQSN 105
L LDI N
Sbjct: 106 LTKLDISEN 114
Score = 37.8 bits (88), Expect = 0.001
Identities = 11/59 (18%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 48 NLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGDWDSLEVLDIQSN 105
+ L N ++ ++ F + L+E +N N ++++ + +L L ++SN
Sbjct: 33 ETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 85.6 bits (212), Expect = 8e-20
Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 4/117 (3%)
Query: 34 ELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LG 92
L AIR +F+ L++LQ L+ + ++ I +F+N SL E + +N +T LPH+
Sbjct: 218 HLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFT 276
Query: 93 DWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLS 149
LE + + NPW C+C I WL ++ + C+ P ++
Sbjct: 277 PLHHLERIHLHHNPWNCNCDILWLSWWI--KDMAPSNTACCARCNTPPNLKGRYIGE 331
Score = 51.3 bits (123), Expect = 5e-08
Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 38 IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGDWDS 96
I+ N+FK+L +L+ L + N + I +FN +L + +N +T++P+
Sbjct: 79 IKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSK 137
Query: 97 LEVLDIQSNP 106
L+ L +++NP
Sbjct: 138 LKELWLRNNP 147
Score = 49.0 bits (117), Expect = 3e-07
Identities = 14/74 (18%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 35 LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDW 94
+ +I F + +L+ L +L++I +F +L+ + + +P+ L
Sbjct: 148 IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPL 206
Query: 95 DSLEVLDIQSNPWT 108
L+ LD+ N +
Sbjct: 207 IKLDELDLSGNHLS 220
Score = 46.7 bits (111), Expect = 2e-06
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL 91
+ + I F L NL TL N +LT I +F LKE ++ NN I S+P
Sbjct: 97 RNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYA 155
Query: 92 -GDWDSLEVLDIQSNP 106
SL LD+
Sbjct: 156 FNRIPSLRRLDLGELK 171
Score = 37.8 bits (88), Expect = 0.001
Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 48 NLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGDWDSLEVLDIQSN 105
N + L + N ++ I SF + L+ ++ N I ++ +L L++ N
Sbjct: 65 NTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 82.0 bits (203), Expect = 4e-19
Identities = 29/117 (24%), Positives = 57/117 (48%), Gaps = 6/117 (5%)
Query: 34 ELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LG 92
+ ++ + F+ L +L L + N ++ +HP++F + L Y+ N +++LP E L
Sbjct: 164 RISSVPERAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA 222
Query: 93 DWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLS 149
+L+ L + NPW CDC + L ++ K + + + CS P + + L
Sbjct: 223 PLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSS----SEVPCSLPQRLAGRDLKR 275
Score = 50.8 bits (122), Expect = 6e-08
Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 38 IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGDWDS 96
I F L L+ L + N +L + P +F+ L +++ + L +
Sbjct: 71 IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA 130
Query: 97 LEVLDIQSN 105
L+ L +Q N
Sbjct: 131 LQYLYLQDN 139
Score = 48.1 bits (115), Expect = 5e-07
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE- 90
N++L ++ TF L L TL+ + L + P F +L+ Y+ +NA+ +LP +
Sbjct: 90 NAQLRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148
Query: 91 LGDWDSLEVLDIQSN 105
D +L L + N
Sbjct: 149 FRDLGNLTHLFLHGN 163
Score = 41.5 bits (98), Expect = 7e-05
Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Query: 38 IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNA-ITSLPHE-LGDWD 95
+ +F+ NL L+ + N L I +F L++ +++NA + S+
Sbjct: 47 VPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG 105
Query: 96 SLEVLDIQSN 105
L L +
Sbjct: 106 RLHTLHLDRC 115
Score = 35.0 bits (81), Expect = 0.012
Identities = 11/60 (18%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 48 NLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGDWDSLEVLDIQSNP 106
Q ++ + N +++ + SF +L ++++N + + LE LD+ N
Sbjct: 33 ASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 81.6 bits (202), Expect = 9e-19
Identities = 23/117 (19%), Positives = 48/117 (41%), Gaps = 4/117 (3%)
Query: 35 LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL--G 92
L + F +L +LQ L + N + + + SL+ + N I + +
Sbjct: 187 LEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 245
Query: 93 DWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLS 149
SL L++ N + C C Q + ++ +++ E+ + C+ P + +LS
Sbjct: 246 FPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVE-RMECATPSDKQGMPVLS 301
Score = 46.5 bits (111), Expect = 1e-06
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 3/71 (4%)
Query: 38 IRKNTFKNLLNLQTLYCNFNPKLTFIH--PYSFNNDWSLKEFYINNNAITSLPHELGDWD 95
+ F L L L + N L+F S SLK ++ N + ++ +
Sbjct: 43 LPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLE 101
Query: 96 SLEVLDIQSNP 106
LE LD Q +
Sbjct: 102 QLEHLDFQHSN 112
Score = 40.0 bits (94), Expect = 2e-04
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Query: 41 NTFKNLLNLQTLYCNFNPKLTFIHPYS-FNNDWSLKEFYINNNAITSLPHE-LGDWDSLE 98
+ F L L+ L + L + +S F + +L I++ + SLE
Sbjct: 95 SNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 153
Query: 99 VLDIQSNPW 107
VL + N +
Sbjct: 154 VLKMAGNSF 162
Score = 38.8 bits (91), Expect = 6e-04
Identities = 10/70 (14%), Positives = 23/70 (32%), Gaps = 4/70 (5%)
Query: 38 IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE--LGDWD 95
+ +L+ L +FN + + +F L+ ++ + +
Sbjct: 69 CCSQSDFGTTSLKYLDLSFN-GVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 126
Query: 96 SLEVLDIQSN 105
+L LDI
Sbjct: 127 NLIYLDISHT 136
Score = 34.6 bits (80), Expect = 0.014
Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 48 NLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWD---SLEVLDIQS 104
+ L N KL + F+ L + +++N ++ SL+ LD+
Sbjct: 29 SATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87
Query: 105 N 105
N
Sbjct: 88 N 88
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 77.8 bits (192), Expect = 6e-18
Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 34 ELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGD 93
L ++ FK L +L+TL N ++T + SF S++ + +N IT++ D
Sbjct: 92 RLENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD 150
Query: 94 W-DSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLS 149
SL L++ +NP+ C+C + WL +++ K++ N C +P + +
Sbjct: 151 TLHSLSTLNLLANPFNCNCYLAWLGEWLRKKRIVTG----NPRCQKPYFLKEIPIQD 203
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 76.6 bits (189), Expect = 1e-16
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 4/118 (3%)
Query: 35 LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL--G 92
I FK+L L+ + N L + FNN SLK + N ITS+ ++
Sbjct: 548 FDEIPVEVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGP 606
Query: 93 DWDSLEVLDIQSNPWTCDC-SIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLS 149
+ +L LD++ NP+ C C SI W ++++ + PEL+ + C+ P + +
Sbjct: 607 AFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRL 664
Score = 45.4 bits (108), Expect = 5e-06
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE 90
++ + I+ N F NL TL + N L+ + +L+E ++NN I +L E
Sbjct: 105 MSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNKIQALKSE 163
Query: 91 LGDWD---SLEVLDIQSNP 106
D SL+ L++ SN
Sbjct: 164 ELDIFANSSLKKLELSSNQ 182
Score = 44.6 bits (106), Expect = 9e-06
Identities = 14/75 (18%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSL-PHE 90
+ + + + L L+ L N +L+ + +F +L E ++ +N+I + +
Sbjct: 58 FNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNP 116
Query: 91 LGDWDSLEVLDIQSN 105
+L LD+ N
Sbjct: 117 FVKQKNLITLDLSHN 131
Score = 43.5 bits (103), Expect = 2e-05
Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSL-PH 89
++EL + TF NL L+ N + I F +L +++N ++S
Sbjct: 81 QHNELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG 139
Query: 90 ELGDWDSLEVLDIQSN 105
++L+ L + +N
Sbjct: 140 TQVQLENLQELLLSNN 155
Score = 42.7 bits (101), Expect = 4e-05
Identities = 14/72 (19%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Query: 37 AIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWD- 95
+ ++ L N+ +Y ++N K + SF SL+ + A+ ++ +
Sbjct: 420 ELTGQEWRGLENIFEIYLSYN-KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP 478
Query: 96 --SLEVLDIQSN 105
+L +LD+ +N
Sbjct: 479 LRNLTILDLSNN 490
Score = 42.7 bits (101), Expect = 5e-05
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 2/69 (2%)
Query: 38 IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLP-HELGDWDS 96
+ F L +L FN ++ + P LK + +N ++ L +
Sbjct: 40 LPAANFTRYSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN 98
Query: 97 LEVLDIQSN 105
L L + SN
Sbjct: 99 LTELHLMSN 107
Score = 42.3 bits (100), Expect = 6e-05
Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 5/76 (6%)
Query: 34 ELYAIRKNTFKNLLN--LQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSL--PH 89
L + TF +L + L L N K++ I +F+ L+ + N I
Sbjct: 366 SLRTLTNETFVSLAHSPLHILNLTKN-KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 424
Query: 90 ELGDWDSLEVLDIQSN 105
E +++ + + N
Sbjct: 425 EWRGLENIFEIYLSYN 440
Score = 41.1 bits (97), Expect = 1e-04
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIH--PYSFNNDWSLKEFYINNNAITSLP 88
+ ++ + +N+F + +LQ L L + P F +L ++NN I ++
Sbjct: 438 SYNKYLQLTRNSFALVPSLQRLMLRRV-ALKNVDSSPSPFQPLRNLTILDLSNNNIANIN 496
Query: 89 -HELGDWDSLEVLDIQSN 105
L + LE+LD+Q N
Sbjct: 497 DDMLEGLEKLEILDLQHN 514
Score = 41.1 bits (97), Expect = 1e-04
Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 4/79 (5%)
Query: 35 LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDW--SLKEFYINNNAITSL-PHEL 91
L + + T L NLQ L + N K+ + + SLK+ +++N I P
Sbjct: 133 LSSTKLGTQVQLENLQELLLSNN-KIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCF 191
Query: 92 GDWDSLEVLDIQSNPWTCD 110
L L + +
Sbjct: 192 HAIGRLFGLFLNNVQLGPS 210
Score = 40.0 bits (94), Expect = 3e-04
Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 10/74 (13%)
Query: 41 NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE---------L 91
+ F+ L NL L + N + I+ L+ + +N + L L
Sbjct: 474 SPFQPLRNLTILDLSNN-NIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFL 532
Query: 92 GDWDSLEVLDIQSN 105
L +L+++SN
Sbjct: 533 KGLSHLHILNLESN 546
Score = 39.6 bits (93), Expect = 5e-04
Identities = 12/74 (16%), Positives = 28/74 (37%), Gaps = 9/74 (12%)
Query: 41 NTFKNLLNLQTLYCNFN--------PKLTFIHPYSFNNDWSLKEFYINNNAITSL-PHEL 91
++ L N++ L + L I +SF L+ + +N I + +
Sbjct: 290 HSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMF 349
Query: 92 GDWDSLEVLDIQSN 105
+L+ L + ++
Sbjct: 350 TGLINLKYLSLSNS 363
Score = 38.1 bits (89), Expect = 0.001
Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 6/82 (7%)
Query: 29 STANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLP 88
S + + L I +F+ L L+ L N + I F +LK ++N+ +
Sbjct: 311 SISLASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIKSNMFTGLINLKYLSLSNSFTSLRT 369
Query: 89 HELGDWD-----SLEVLDIQSN 105
+ L +L++ N
Sbjct: 370 LTNETFVSLAHSPLHILNLTKN 391
Score = 38.1 bits (89), Expect = 0.001
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 4/88 (4%)
Query: 32 NSELYAIRKNTFKNL--LNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSL-P 88
NS+L TF L NL L ++N L + SF L+ F++ N I L
Sbjct: 231 NSQLSTTSNTTFLGLKWTNLTMLDLSYN-NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS 289
Query: 89 HELGDWDSLEVLDIQSNPWTCDCSIQWL 116
H L ++ L+++ + S+ L
Sbjct: 290 HSLHGLFNVRYLNLKRSFTKQSISLASL 317
Score = 37.7 bits (88), Expect = 0.002
Identities = 12/77 (15%), Positives = 29/77 (37%), Gaps = 7/77 (9%)
Query: 35 LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDW---SLKEFYINNNAITSLPHEL 91
+ F + L L+ N +L + S++ ++N+ +++ +
Sbjct: 183 IKEFSPGCFHAIGRLFGLFLNNV-QLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241
Query: 92 GD---WDSLEVLDIQSN 105
W +L +LD+ N
Sbjct: 242 FLGLKWTNLTMLDLSYN 258
Score = 36.1 bits (84), Expect = 0.006
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 38 IRKNTFKNLLNLQTLYCNFNP-KLTFIHPYSFNN--DWSLKEFYINNNAITSLPHE-LGD 93
I+ N F L+NL+ L + + L + +F + L + N I+ + +
Sbjct: 344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 403
Query: 94 WDSLEVLDIQSNP 106
LEVLD+ N
Sbjct: 404 LGHLEVLDLGLNE 416
Score = 36.1 bits (84), Expect = 0.007
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 48 NLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSL-PHELGDWDSLEVLDIQSNP 106
N+ L N +L + +F L + N I+ L P L+VL++Q N
Sbjct: 26 NITVLNLTHN-QLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Score = 32.7 bits (75), Expect = 0.074
Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
Query: 42 TFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAIT-SLPHELGDWD---SL 97
+L+ L + N ++ P F+ L ++NN + SL +L S+
Sbjct: 166 DIFANSSLKKLELSSN-QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSI 224
Query: 98 EVLDIQSN 105
L + ++
Sbjct: 225 RNLSLSNS 232
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 73.5 bits (181), Expect = 2e-16
Identities = 24/116 (20%), Positives = 52/116 (44%), Gaps = 6/116 (5%)
Query: 35 LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDW 94
+ + K+ F+ L +LQ L N N K+ + +F + +L + +N + ++
Sbjct: 92 ITELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150
Query: 95 -DSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLS 149
+++ + + NP+ CDC ++WL DY+ C+ P + +N +
Sbjct: 151 LRAIQTMHLAQNPFICDCHLKWLADYLHTNPIETS----GARCTSPRRLANKRIGQ 202
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 75.8 bits (187), Expect = 2e-16
Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 3/119 (2%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL 91
+L I F L LQ L + N L F+ +N +SL + N I + L
Sbjct: 482 KCQLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFNRIETSKGIL 540
Query: 92 GDW-DSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLS 149
+ SL ++ +N C C Q + +V ++++ + + C+ PV+ + +L
Sbjct: 541 QHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVE-QMTCATPVEMNTSLVLD 598
Score = 45.0 bits (107), Expect = 8e-06
Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLP-HE 90
E+ I + L +L L N + P SF+ SL+ + SL
Sbjct: 65 RCEIETIEDKAWHGLHHLSNLILTGN-PIQSFSPGSFSGLTSLENLVAVETKLASLESFP 123
Query: 91 LGDWDSLEVLDIQSN 105
+G +L+ L++ N
Sbjct: 124 IGQLITLKKLNVAHN 138
Score = 44.6 bits (106), Expect = 9e-06
Identities = 27/143 (18%), Positives = 53/143 (37%), Gaps = 13/143 (9%)
Query: 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITS--LP 88
+ + + +F L +L+ L KL + + +LK+ + +N I S LP
Sbjct: 88 TGNPIQSFSPGSFSGLTSLENLVAVET-KLASLESFPIGQLITLKKLNVAHNFIHSCKLP 146
Query: 89 HELGDWDSLEVLDIQSNPWT--CDCSIQWLIDYVAKRQRTDPELNYN-LHCSQPVKFSNV 145
+ +L +D+ N +Q+L + D ++ N + Q F +
Sbjct: 147 AYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLD--MSLNPIDFIQDQAFQGI 204
Query: 146 HLL-----SNPLLSHISGECVKG 163
L N S+I C++
Sbjct: 205 KLHELTLRGNFNSSNIMKTCLQN 227
Score = 42.7 bits (101), Expect = 4e-05
Identities = 13/72 (18%), Positives = 19/72 (26%), Gaps = 1/72 (1%)
Query: 38 IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGDWDS 96
I F L LQ L + +F + L I+ S
Sbjct: 390 IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449
Query: 97 LEVLDIQSNPWT 108
L L + N +
Sbjct: 450 LNTLKMAGNSFK 461
Score = 41.9 bits (99), Expect = 8e-05
Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
Query: 41 NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDW--SLKEFYINNNAITSLPHELGDWDSLE 98
L +L L + N L+F S+++ SL+ ++ N + + L+
Sbjct: 344 FKKVALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQ 402
Query: 99 VLDIQSN 105
LD Q +
Sbjct: 403 HLDFQHS 409
Score = 37.3 bits (87), Expect = 0.002
Identities = 9/68 (13%), Positives = 19/68 (27%), Gaps = 5/68 (7%)
Query: 38 IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSL 97
F L N+ + + ++ + + I + P D L
Sbjct: 276 DDIVKFHCLANVSAMSLAGV-SIKYLEDVPKHF--KWQSLSIIRCQLKQFPT--LDLPFL 330
Query: 98 EVLDIQSN 105
+ L + N
Sbjct: 331 KSLTLTMN 338
Score = 36.5 bits (85), Expect = 0.004
Identities = 7/75 (9%), Positives = 19/75 (25%), Gaps = 2/75 (2%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNP-KLTFIHPYSFNNDWSLKEFYINNNAITSLPHE 90
L + + L ++ F+ ++ + +I L +
Sbjct: 244 ERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-D 302
Query: 91 LGDWDSLEVLDIQSN 105
+ + L I
Sbjct: 303 VPKHFKWQSLSIIRC 317
Score = 34.2 bits (79), Expect = 0.023
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 48 NLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSL-PHELGDWDSLEVLDIQSNP 106
+ + + +FN L + YSF+N L+ ++ I ++ L L + NP
Sbjct: 33 STKNIDLSFN-PLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91
Score = 27.7 bits (62), Expect = 3.2
Identities = 13/82 (15%), Positives = 23/82 (28%), Gaps = 8/82 (9%)
Query: 35 LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDW 94
+ I+ F+ + L L N + I N L +
Sbjct: 193 IDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER------ 245
Query: 95 DSLEVLDIQSNPWTCDCSIQWL 116
+LE+ + CD +I
Sbjct: 246 -NLEIFEPSIMEGLCDVTIDEF 266
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 74.3 bits (183), Expect = 8e-16
Identities = 23/119 (19%), Positives = 48/119 (40%), Gaps = 4/119 (3%)
Query: 35 LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSL-PHELGD 93
L +I ++ F +L + + + N +LT + ++ + + +N I+ + P L
Sbjct: 488 LSSIDQHAFTSLKMMNHVDLSHN-RLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPI 545
Query: 94 WDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNPL 152
++++ NP C CS + +++ K E + C P V L L
Sbjct: 546 LSQQRTINLRQNPLDCTCSNIYFLEWY-KENMQKLEDTEDTLCENPPLLRGVRLSDVTL 603
Score = 47.7 bits (114), Expect = 1e-06
Identities = 13/77 (16%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 31 ANSELYAIRKNTFKNL--LNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLP 88
+ + I F+ L ++++++ + I +F+ L+E + ++ LP
Sbjct: 236 EDMDDEDISPAVFEGLCEMSVESINLQKH-YFFNISSNTFHCFSGLQELDLTATHLSELP 294
Query: 89 HELGDWDSLEVLDIQSN 105
L +L+ L + +N
Sbjct: 295 SGLVGLSTLKKLVLSAN 311
Score = 45.4 bits (108), Expect = 5e-06
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSL-PHE 90
++Y I ++TF++ L TL N L F+ + + +LK + I+S+
Sbjct: 66 RCQIYWIHEDTFQSQHRLDTLVLTAN-PLIFMAETALSGPKALKHLFFIQTGISSIDFIP 124
Query: 91 LGDWDSLEVLDIQSN 105
L + +LE L + SN
Sbjct: 125 LHNQKTLESLYLGSN 139
Score = 45.0 bits (107), Expect = 6e-06
Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 35 LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYS-FNNDWSLKEFYINNNAITSLPHE-LG 92
+++ FK L+ L F +L S F N LK ++++ + +
Sbjct: 388 PLSLKTEAFKECPQLELLDLAFT-RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD 446
Query: 93 DWDSLEVLDIQSN 105
+L+ L++Q N
Sbjct: 447 GLPALQHLNLQGN 459
Score = 44.2 bits (105), Expect = 1e-05
Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 4/77 (5%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIH--PYSFNNDWSLKEFYINNNAITSLPH 89
N++ + +NL NL+ L + + + N L+ ++ N SL
Sbjct: 335 NTKRLELGTGCLENLENLRELDLSHD-DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT 393
Query: 90 E-LGDWDSLEVLDIQSN 105
E + LE+LD+
Sbjct: 394 EAFKECPQLELLDLAFT 410
Score = 44.2 bits (105), Expect = 1e-05
Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLP-H 89
+ L + + L+ L+ ++ I +N +L+ Y+ +N I+S+
Sbjct: 89 TANPLIFMAETALSGPKALKHLFFIQT-GISSIDFIPLHNQKTLESLYLGSNHISSIKLP 147
Query: 90 ELGDWDSLEVLDIQSN 105
+ + L+VLD Q+N
Sbjct: 148 KGFPTEKLKVLDFQNN 163
Score = 43.1 bits (102), Expect = 3e-05
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
Query: 38 IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGDWDS 96
I+ TF L+NL L ++ +IH +F + L + N + + L +
Sbjct: 48 IQNTTFSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKA 106
Query: 97 LEVLDIQSN 105
L+ L
Sbjct: 107 LKHLFFIQT 115
Score = 43.1 bits (102), Expect = 3e-05
Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 3/75 (4%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLP-HE 90
+ I NTF LQ L L+ + P +LK+ ++ N +L
Sbjct: 263 KHYFFNISSNTFHCFSGLQELDLTAT-HLSEL-PSGLVGLSTLKKLVLSANKFENLCQIS 320
Query: 91 LGDWDSLEVLDIQSN 105
++ SL L I+ N
Sbjct: 321 ASNFPSLTHLSIKGN 335
Score = 41.9 bits (99), Expect = 8e-05
Identities = 17/75 (22%), Positives = 24/75 (32%), Gaps = 4/75 (5%)
Query: 38 IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGDWDS 96
I N L++LY N ++ I LK NNAI L E +
Sbjct: 120 IDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQ 178
Query: 97 LEV--LDIQSNPWTC 109
L++ N
Sbjct: 179 ATNLSLNLNGNDIAG 193
Score = 41.5 bits (98), Expect = 9e-05
Identities = 12/71 (16%), Positives = 27/71 (38%), Gaps = 3/71 (4%)
Query: 38 IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWD-- 95
+ + + N +L L N K + N +L+E ++++ I +
Sbjct: 316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL 375
Query: 96 -SLEVLDIQSN 105
L+ L++ N
Sbjct: 376 SHLQSLNLSYN 386
Score = 40.4 bits (95), Expect = 3e-04
Identities = 11/70 (15%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Query: 38 IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE--LGDWD 95
+NL +LQ+L ++N + + +F L+ + + + +
Sbjct: 367 CCNLQLRNLSHLQSLNLSYN-EPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH 425
Query: 96 SLEVLDIQSN 105
L+VL++ +
Sbjct: 426 LLKVLNLSHS 435
Score = 39.6 bits (93), Expect = 4e-04
Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 3/67 (4%)
Query: 41 NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSL--PHELGDWDSLE 98
+ L L+ L + N K + S +N SL I N L + ++L
Sbjct: 295 SGLVGLSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353
Query: 99 VLDIQSN 105
LD+ +
Sbjct: 354 ELDLSHD 360
Score = 34.2 bits (79), Expect = 0.025
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 48 NLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSL-PHELGDWDSLEVLDIQSNP 106
+ + L +FN L I +F+ +L + I + L+ L + +NP
Sbjct: 34 STECLEFSFN-VLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 72.8 bits (179), Expect = 3e-15
Identities = 23/117 (19%), Positives = 48/117 (41%), Gaps = 4/117 (3%)
Query: 35 LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL--G 92
L + F +L +LQ L + N + + + SL+ + N I + +
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 540
Query: 93 DWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLS 149
SL L++ N + C C Q + ++ +++ E+ + C+ P + +LS
Sbjct: 541 FPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVE-RMECATPSDKQGMPVLS 596
Score = 44.6 bits (106), Expect = 8e-06
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 3/70 (4%)
Query: 38 IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITS--LPHELGDWD 95
+ F +L NL L + FN SL+ + N+ LP +
Sbjct: 412 SEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 470
Query: 96 SLEVLDIQSN 105
+L LD+
Sbjct: 471 NLTFLDLSQC 480
Score = 43.9 bits (104), Expect = 2e-05
Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSL-PHE 90
E+ I +++L +L TL N + + +F+ SL++ + SL
Sbjct: 61 RCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFP 119
Query: 91 LGDWDSLEVLDIQSN 105
+G +L+ L++ N
Sbjct: 120 IGHLKTLKELNVAHN 134
Score = 43.1 bits (102), Expect = 3e-05
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSL--P 88
+ + ++ F L +LQ L L + + + +LKE + +N I S P
Sbjct: 84 TGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142
Query: 89 HELGDWDSLEVLDIQSN 105
+ +LE LD+ SN
Sbjct: 143 EYFSNLTNLEHLDLSSN 159
Score = 42.7 bits (101), Expect = 4e-05
Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
Query: 33 SELYAIRKNTFKNLLNLQTLYCNFNPKLTFIH--PYSFNNDWSLKEFYINNNAITSLPHE 90
+ + +L +L+ L + N L+F S SLK ++ N + ++
Sbjct: 333 TSNKGGNAFSEVDLPSLEFLDLSRN-GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN 391
Query: 91 LGDWDSLEVLDIQSN 105
+ LE LD Q +
Sbjct: 392 FLGLEQLEHLDFQHS 406
Score = 38.9 bits (91), Expect = 7e-04
Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 2/72 (2%)
Query: 35 LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSL-PHELGD 93
L + +F + LQ L + ++ I ++ + L + N I SL
Sbjct: 40 LRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98
Query: 94 WDSLEVLDIQSN 105
SL+ L
Sbjct: 99 LSSLQKLVAVET 110
Score = 37.7 bits (88), Expect = 0.002
Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 1/66 (1%)
Query: 41 NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSL-PHELGDWDSLEV 99
+ F L L+ L + F + +L I++ SLEV
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449
Query: 100 LDIQSN 105
L + N
Sbjct: 450 LKMAGN 455
Score = 36.5 bits (85), Expect = 0.004
Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 5/72 (6%)
Query: 41 NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEF----YINNNAITSLPHELGDWDS 96
F NL NL+ L + N K+ I+ + ++ N + +
Sbjct: 143 EYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 201
Query: 97 LEVLDIQSNPWT 108
L L +++N +
Sbjct: 202 LHKLTLRNNFDS 213
Score = 35.8 bits (83), Expect = 0.008
Identities = 10/67 (14%), Positives = 23/67 (34%), Gaps = 4/67 (5%)
Query: 41 NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSL--PHELGDWDSLE 98
+ +L+ L +FN + + +F L+ ++ + + +L
Sbjct: 367 QSDFGTTSLKYLDLSFN-GVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424
Query: 99 VLDIQSN 105
LDI
Sbjct: 425 YLDISHT 431
Score = 34.6 bits (80), Expect = 0.020
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 48 NLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSL-PHELGDWDSLEVLDIQSNP 106
+ + L +FN L + YSF + L+ ++ I ++ L L + NP
Sbjct: 29 STKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Score = 31.5 bits (72), Expect = 0.21
Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 35 LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSL-PHELGD 93
L ++ +L L+ L N +F P F+N +L+ +++N I S+ +L
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171
Query: 94 WDSLEV----LDIQSNP 106
+ + LD+ NP
Sbjct: 172 LHQMPLLNLSLDLSLNP 188
Score = 28.1 bits (63), Expect = 2.2
Identities = 11/77 (14%), Positives = 25/77 (32%), Gaps = 5/77 (6%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIH---PYSFNNDWSLKEFYINNNAITSLP 88
L K+ + L NL L + FN ++ F + + I +
Sbjct: 240 EGNLEKFDKSALEGLCNLTIEEFRLA-YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK 298
Query: 89 HELGDWDSLEVLDIQSN 105
++ + L++ +
Sbjct: 299 DFSYNF-GWQHLELVNC 314
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 71.8 bits (176), Expect = 4e-15
Identities = 24/124 (19%), Positives = 51/124 (41%), Gaps = 8/124 (6%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDW---SLKEFYINNNAITSLP 88
N+ + + +N F+++ LQ LY + N +++ + L +++N + LP
Sbjct: 121 NNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179
Query: 89 HELGDWDS---LEVLDIQSNPWTCDCSIQWLID-YVAKRQRTDPELNYNLHCSQPVKFSN 144
L + +NP CDC + L + ++ + + +L+C K N
Sbjct: 180 LTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHN 239
Query: 145 VHLL 148
+ L
Sbjct: 240 IFSL 243
Score = 47.5 bits (113), Expect = 9e-07
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 39 RKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGDWDSL 97
+ T L NL +L + N L FI +F +L+ +++N + +L D +L
Sbjct: 56 AEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQAL 114
Query: 98 EVLDIQSNP 106
EVL + +N
Sbjct: 115 EVLLLYNNH 123
Score = 31.7 bits (72), Expect = 0.15
Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 48 NLQTLYCNFNPKLTFIHP-YSFNNDWSLKEFYINNNAITSLPHE-LGDWDSLEVLDIQSN 105
L + N L+ + ++ +L +++N + + E +L LD+ SN
Sbjct: 40 YTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 68.6 bits (168), Expect = 4e-14
Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 1/90 (1%)
Query: 35 LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDW 94
L + L+ L N LT + N +L + N++ ++P
Sbjct: 136 LKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194
Query: 95 DSLEVLDIQSNPWTCDCSIQWLIDYVAKRQ 124
L + NPW C+C I + ++
Sbjct: 195 HLLPFAFLHGNPWLCNCEILYFRRWLQDNA 224
Score = 36.2 bits (84), Expect = 0.004
Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 3/71 (4%)
Query: 35 LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDW 94
LY T L L + +LT + L +++N + SLP
Sbjct: 43 LYTFSLATLMPYTRLTQLNLDRA-ELTKLQV--DGTLPVLGTLDLSHNQLQSLPLLGQTL 99
Query: 95 DSLEVLDIQSN 105
+L VLD+ N
Sbjct: 100 PALTVLDVSFN 110
Score = 35.1 bits (81), Expect = 0.009
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Query: 42 TFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDW-DSLEVL 100
L L TL + N +L + P +L ++ N +TSLP L+ L
Sbjct: 72 VDGTLPVLGTLDLSHN-QLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 101 DIQSN 105
++ N
Sbjct: 130 YLKGN 134
Score = 31.6 bits (72), Expect = 0.13
Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 2/58 (3%)
Query: 48 NLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSN 105
+ L+ + N L + L + ++ +T L G L LD+ N
Sbjct: 32 DTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTKLQ-VDGTLPVLGTLDLSHN 87
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 69.1 bits (169), Expect = 5e-14
Identities = 35/171 (20%), Positives = 68/171 (39%), Gaps = 10/171 (5%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL 91
++ L ++ F +L L+ L N N +LT + +L+ I+ N + + ++
Sbjct: 489 HNYLNSLPPGVFSHLTALRGLSLNSN-RLTVLSHNDLPA--NLEILDISRNQLLAPNPDV 545
Query: 92 GDWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNP 151
+ SL VLDI N + C+C + I+++ T +++C P FS V L S
Sbjct: 546 --FVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLS 603
Query: 152 LLSHISGECVKGALVISQLSTQFYKLYPLLFIMTLLLITLVVYLICMSYKY 202
E +K + L + + ++T+ + Y
Sbjct: 604 TEGCDEEEVLKSLKFSLFIVCTV-----TLTLFLMTILTVTKFRGFCFICY 649
Score = 52.5 bits (126), Expect = 3e-08
Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 2/80 (2%)
Query: 38 IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGDWDS 96
I F L NLQ L ++N L ++ +F + + N I + + +
Sbjct: 305 IADEAFYGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEK 363
Query: 97 LEVLDIQSNPWTCDCSIQWL 116
L+ LD++ N T I +
Sbjct: 364 LQTLDLRDNALTTIHFIPSI 383
Score = 45.2 bits (107), Expect = 7e-06
Identities = 14/75 (18%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE- 90
+ ++++ F+ L +L+ L +N K+ I +F +L+ ++ N + L
Sbjct: 275 HGFVFSLNSRVFETLKDLKVLNLAYN-KINKIADEAFYGLDNLQVLNLSYNLLGELYSSN 333
Query: 91 LGDWDSLEVLDIQSN 105
+ +D+Q N
Sbjct: 334 FYGLPKVAYIDLQKN 348
Score = 44.4 bits (105), Expect = 1e-05
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSL---P 88
I K F+NL NL+ L + K+ F+HP +F + L E + ++
Sbjct: 58 QYTPLTIDKEAFRNLPNLRILDLGSS-KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKD 116
Query: 89 HELGDWDSLEVLDIQSN 105
+ +L LD+ N
Sbjct: 117 GYFRNLKALTRLDLSKN 133
Score = 43.3 bits (102), Expect = 3e-05
Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 1/69 (1%)
Query: 38 IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDW-DS 96
+ ++F L LQ L I +F N +L+ + ++ I L +
Sbjct: 39 VTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFH 98
Query: 97 LEVLDIQSN 105
L L +
Sbjct: 99 LFELRLYFC 107
Score = 42.5 bits (100), Expect = 5e-05
Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 4/78 (5%)
Query: 31 ANSELYAIRKNTFKNL--LNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLP 88
+ +NTF L +++ L + + ++ F LK + N I +
Sbjct: 248 GFHNIKDPDQNTFAGLARSSVRHLDLSHG-FVFSLNSRVFETLKDLKVLNLAYNKINKIA 306
Query: 89 -HELGDWDSLEVLDIQSN 105
D+L+VL++ N
Sbjct: 307 DEAFYGLDNLQVLNLSYN 324
Score = 40.9 bits (96), Expect = 1e-04
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Query: 31 ANSELYAIRKNTFKNLLNLQTLYCNFNP-KLTFIHPYSFNNDWSLKEFYINNNAITSLPH 89
+S++Y + + F+ L +L L F + F N +L ++ N I SL
Sbjct: 81 GSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL 140
Query: 90 E--LGDWDSLEVLDIQSN 105
G +SL+ +D SN
Sbjct: 141 HPSFGKLNSLKSIDFSSN 158
Score = 39.8 bits (93), Expect = 4e-04
Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 3/83 (3%)
Query: 37 AIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDW-- 94
++ F+NL L L + N + SF SLK ++N I + +
Sbjct: 113 VLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ 172
Query: 95 -DSLEVLDIQSNPWTCDCSIQWL 116
+L + +N S+ W
Sbjct: 173 GKTLSFFSLAANSLYSRVSVDWG 195
Score = 36.3 bits (84), Expect = 0.006
Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSL--PHELGDWDSLEVL 100
+ L + L +FN + + SF L+ + + + +L +L
Sbjct: 20 PQVLNTTERLLLSFN-YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRIL 78
Query: 101 DIQSNP 106
D+ S+
Sbjct: 79 DLGSSK 84
Score = 35.2 bits (81), Expect = 0.011
Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 21/105 (20%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPY--------SFNN-------DWSLKE 76
+ + I+ TFK L LQTL N LT IH S N + +
Sbjct: 347 KNHIAIIQDQTFKFLEKLQTLDLRDN-ALTTIHFIPSIPDIFLSGNKLVTLPKINLTANL 405
Query: 77 FYINNNAITSLPHE--LGDWDSLEVLDIQSNPWT---CDCSIQWL 116
+++ N + +L L L++L + N ++ D +
Sbjct: 406 IHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSEN 450
Score = 35.2 bits (81), Expect = 0.013
Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 6/69 (8%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWD------S 96
+ +LQ L N N + + + + SL++ ++ N + WD
Sbjct: 422 LLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSH 481
Query: 97 LEVLDIQSN 105
L+VL + N
Sbjct: 482 LQVLYLNHN 490
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 67.1 bits (164), Expect = 2e-13
Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 35 LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDW 94
L +I F+NL L+ L ++N + + SF +LKE ++ N + S+P + D
Sbjct: 335 LGSIDSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDR 393
Query: 95 -DSLEVLDIQSNPWTCDCS-IQWLIDYVAKRQRTDP 128
SL+ + + +NPW C C I +L ++ K + +
Sbjct: 394 LTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQ 429
Score = 48.6 bits (116), Expect = 4e-07
Identities = 26/162 (16%), Positives = 48/162 (29%), Gaps = 6/162 (3%)
Query: 31 ANSELYAIRKNTFKNLLNLQTLYCNFNP-KLTFIHPYSFNNDWSLKEFYINNNAITSL-P 88
++ + F L NL+ L + F SL+ + +N I + P
Sbjct: 87 DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP 146
Query: 89 HELGD-WDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHL 147
VLD+ N C + T L+ +
Sbjct: 147 ASFFLNMRRFHVLDLTFNKVKSICEEDL--LNFQGKHFTLLRLSSITLQDMNEYWLGWEK 204
Query: 148 LSNPL-LSHISGECVKGALVISQLSTQFYKLYPLLFIMTLLL 188
NP + I+ + G ++ +F+ I +L+L
Sbjct: 205 CGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246
Score = 39.7 bits (93), Expect = 3e-04
Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 1/69 (1%)
Query: 38 IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGDWDS 96
+ + +F L +LQ L I +F SL ++ N L +
Sbjct: 45 LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLAN 104
Query: 97 LEVLDIQSN 105
LEVL +
Sbjct: 105 LEVLTLTQC 113
Score = 29.3 bits (66), Expect = 0.79
Identities = 8/60 (13%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 48 NLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAI-TSLPHELGDW-DSLEVLDIQSN 105
++ + + N + ++ SF+ L+ + + + SL +L + N
Sbjct: 31 HVNYVDLSLN-SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 64.8 bits (158), Expect = 1e-12
Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 7/109 (6%)
Query: 33 SELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-L 91
SEL N+ + + + N L E + N + S+P
Sbjct: 240 SELSTGETNSLIKKFTFRNVKITDESLFQVMKL--LNQISGLLELEFSRNQLKSVPDGIF 297
Query: 92 GDWDSLEVLDIQSNPWTCDCS-IQWLIDYVAKRQRTDPELNYNLHCSQP 139
SL+ + + +NPW C C I +L ++ K + + + CS
Sbjct: 298 DRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQG---SAKCSGS 343
Score = 50.1 bits (120), Expect = 1e-07
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 38 IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDS 96
I + + +NLQ L N + I SF++ SL+ ++ N +++L S
Sbjct: 67 ISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSS 125
Query: 97 LEVLDIQSNPWTC 109
L L++ NP+
Sbjct: 126 LTFLNLLGNPYKT 138
Score = 47.4 bits (113), Expect = 1e-06
Identities = 13/78 (16%), Positives = 27/78 (34%), Gaps = 2/78 (2%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL 91
I++ F L L+ L + + L P S + ++ ++ L
Sbjct: 159 MDTFTKIQRKDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIF 217
Query: 92 GDW-DSLEVLDIQSNPWT 108
D S+E L+++
Sbjct: 218 VDVTSSVECLELRDTDLD 235
Score = 41.6 bits (98), Expect = 7e-05
Identities = 14/77 (18%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE- 90
++ + I +++F +L +L+ L ++N L+ + F SL + N +L
Sbjct: 85 SNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETS 143
Query: 91 -LGDWDSLEVLDIQSNP 106
L++L + +
Sbjct: 144 LFSHLTKLQILRVGNMD 160
Score = 41.6 bits (98), Expect = 8e-05
Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 1/67 (1%)
Query: 41 NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGDWDSLEV 99
+ F +L LQ L T I F L+E I+ + + S + L ++
Sbjct: 143 SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSH 202
Query: 100 LDIQSNP 106
L +
Sbjct: 203 LILHMKQ 209
Score = 34.7 bits (80), Expect = 0.014
Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 48 NLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEVLDIQSN 105
+++L + N ++T+I +L+ + +N I ++ + SLE LD+ N
Sbjct: 53 AVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 64.7 bits (158), Expect = 1e-12
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 41 NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGDWDSLEV 99
+ F L NL L + +L + P +FN+ SL+ + +N + S+P SL+
Sbjct: 464 DIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQK 522
Query: 100 LDIQSNPWTCDCS-IQWLIDYVAKRQRTDP 128
+ + +NPW C C I +L ++ K + +
Sbjct: 523 IWLHTNPWDCSCPRIDYLSRWLNKNSQKEQ 552
Score = 45.5 bits (108), Expect = 5e-06
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
Query: 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSL--P 88
+ + ++ F L +LQ L L + + + +LKE + +N I S P
Sbjct: 84 TGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142
Query: 89 HELGDWDSLEVLDIQSNPWTC 109
+ +LE LD+ SN
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQS 163
Score = 44.7 bits (106), Expect = 8e-06
Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE- 90
E+ I +++L +L TL N + + +F+ SL++ + SL +
Sbjct: 61 RCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFP 119
Query: 91 LGDWDSLEVLDIQSN 105
+G +L+ L++ N
Sbjct: 120 IGHLKTLKELNVAHN 134
Score = 42.8 bits (101), Expect = 3e-05
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 41 NTFKNLLNLQTLYCNFNPKLTFI--HPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLE 98
+ +L +L+ L + N L+F S SLK ++ N + ++ + LE
Sbjct: 341 FSEVDLPSLEFLDLSRN-GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLE 399
Query: 99 VLDIQSN 105
LD Q +
Sbjct: 400 HLDFQHS 406
Score = 41.6 bits (98), Expect = 8e-05
Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 2/69 (2%)
Query: 38 IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGDWDS 96
+ +F + LQ L + ++ I ++ + L + N I SL S
Sbjct: 43 LGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101
Query: 97 LEVLDIQSN 105
L+ L
Sbjct: 102 LQKLVAVET 110
Score = 40.9 bits (96), Expect = 1e-04
Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 1/69 (1%)
Query: 41 NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGDWDSLEV 99
+ F L L+ L + F + +L I++ + SLEV
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449
Query: 100 LDIQSNPWT 108
L + N +
Sbjct: 450 LKMAGNSFQ 458
Score = 40.1 bits (94), Expect = 3e-04
Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 3/67 (4%)
Query: 41 NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITS--LPHELGDWDSLE 98
+ F +L NL L + FN SL+ + N+ LP + +L
Sbjct: 415 SVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 473
Query: 99 VLDIQSN 105
LD+
Sbjct: 474 FLDLSQC 480
Score = 38.9 bits (91), Expect = 6e-04
Identities = 10/73 (13%), Positives = 23/73 (31%), Gaps = 4/73 (5%)
Query: 38 IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE--LGDWD 95
+ +L+ L +FN + + +F L+ ++ + +
Sbjct: 364 CCSQSDFGTTSLKYLDLSFN-GVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421
Query: 96 SLEVLDIQSNPWT 108
+L LDI
Sbjct: 422 NLIYLDISHTHTR 434
Score = 35.8 bits (83), Expect = 0.006
Identities = 9/85 (10%), Positives = 29/85 (34%), Gaps = 3/85 (3%)
Query: 32 NSELYAIRKNTFKNL--LNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPH 89
L K+ + L L ++ + FN ++ F + + I +
Sbjct: 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD 299
Query: 90 ELGDWDSLEVLDIQSNPWTCDCSIQ 114
++ + L++ + + +++
Sbjct: 300 FSYNF-GWQHLELVNCKFGQFPTLK 323
Score = 35.5 bits (82), Expect = 0.009
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 48 NLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGDWDSLEVLDIQSNP 106
+ + L +FN L + YSF + L+ ++ I ++ L L + NP
Sbjct: 29 STKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Score = 33.9 bits (78), Expect = 0.028
Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 7/82 (8%)
Query: 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIH-PYSFNNDWSLKEFYINNNAITSLPH 89
+ L ++ +L L+ L N + P F+N +L+ +++N I S+
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166
Query: 90 E----LGDWDSLEV-LDIQSNP 106
L L + LD+ NP
Sbjct: 167 TDLRVLHQMPLLNLSLDLSLNP 188
Score = 27.8 bits (62), Expect = 3.3
Identities = 14/64 (21%), Positives = 19/64 (29%), Gaps = 5/64 (7%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDI 102
F Q L + SLK +N + E+ SLE LD+
Sbjct: 300 FSYNFGWQHLELVNCK----FGQFPTLKLKSLKRLTFTSNKGGNAFSEVD-LPSLEFLDL 354
Query: 103 QSNP 106
N
Sbjct: 355 SRNG 358
Score = 26.6 bits (59), Expect = 7.6
Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 6/67 (8%)
Query: 42 TFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSL---PHELGDWDSLE 98
L +L+ L N + +S + SL+ ++ N ++ SL+
Sbjct: 320 PTLKLKSLKRLTFTSNK---GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376
Query: 99 VLDIQSN 105
LD+ N
Sbjct: 377 YLDLSFN 383
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB:
3rez_A*
Length = 130
Score = 60.2 bits (146), Expect = 3e-12
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Query: 73 SLKEFYINNNAITSLPHELGDW-DSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELN 131
E + N +T+LP L D +L + +NPW CDC + L ++ R +
Sbjct: 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWL--AGRPERAPY 89
Query: 132 YNLHCSQPVKFSNVHLLS 149
+L C P L
Sbjct: 90 RDLRCVAPPALRGRLLPY 107
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 61.2 bits (149), Expect = 5e-12
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL 91
++L I N F+ ++Q L N K+ I F LK + +N I+ +
Sbjct: 63 RNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLKTLNLYDNQISCVMP-- 119
Query: 92 GDWD---SLEVLDIQSNPWTCDCSIQWLIDYVAKRQ 124
G ++ SL L++ SNP+ C+C + W +++ K+
Sbjct: 120 GSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKS 155
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 61.5 bits (150), Expect = 1e-11
Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 6/113 (5%)
Query: 34 ELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGD 93
EL ++ K F L +L+ L N +L + +F+ LK ++NN + +P D
Sbjct: 144 ELQSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFD 202
Query: 94 W-DSLEVLDIQSNPWTCDCS-IQWLIDYVAKRQRTDPELNYNLHCS---QPVK 141
+ L++L +Q NPW C C+ I ++ ++ K+ C + V
Sbjct: 203 SLEKLKMLQLQENPWDCTCNGIIYMAKWLKKKADEGLGGVDTAGCEKGGKAVL 255
Score = 41.9 bits (99), Expect = 6e-05
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 38 IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDW-DS 96
+ F L L+ LY N N KL + F +L+ ++ +N + +LP + D +
Sbjct: 52 LPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVN 110
Query: 97 LEVLDIQSN 105
L L + N
Sbjct: 111 LAELRLDRN 119
Score = 41.5 bits (98), Expect = 7e-05
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 41 NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWD---SL 97
F L+NL L + N +L + P F++ L + N + SLP G +D SL
Sbjct: 103 GVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNELQSLPK--GVFDKLTSL 159
Query: 98 EVLDIQSN 105
+ L + +N
Sbjct: 160 KELRLYNN 167
Score = 38.8 bits (91), Expect = 6e-04
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL 91
+++L + FK L NL+TL+ N KL + F+ +L E ++ N + SLP
Sbjct: 70 DNKLQTLPAGIFKELKNLETLWVTDN-KLQALPIGVFDQLVNLAELRLDRNQLKSLPP-- 126
Query: 92 GDWDS---LEVLDIQSN 105
+DS L L + N
Sbjct: 127 RVFDSLTKLTYLSLGYN 143
Score = 31.1 bits (71), Expect = 0.23
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Query: 48 NLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLP----HELGDWDSLEVLDIQ 103
+ + L N KL+ + +F+ L+ Y+N+N + +LP EL +LE L +
Sbjct: 38 DTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELK---NLETLWVT 93
Query: 104 SN 105
N
Sbjct: 94 DN 95
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 59.6 bits (145), Expect = 2e-11
Identities = 30/94 (31%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL 91
N+ + + +F N+ L TL ++N +L I P +F+ SL+ ++ N I+ +P
Sbjct: 63 NNRISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTFDGLKSLRLLSLHGNDISVVPE-- 119
Query: 92 GDWD---SLEVLDIQSNPWTCDCSIQWLIDYVAK 122
G ++ +L L I +NP CDC++QWL D+V
Sbjct: 120 GAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKS 153
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 60.8 bits (148), Expect = 2e-11
Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 11/113 (9%)
Query: 35 LYAIRKNTFKNLLNLQ----TLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE 90
+ +I + L + +L + N + FI P +F LKE ++ N + S+P
Sbjct: 161 IQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEI-RLKELALDTNQLKSVPDG 218
Query: 91 LGD-WDSLEVLDIQSNPWTCDCS-IQWLIDYVAKRQRTDPELNYNLHCSQPVK 141
+ D SL+ + + +NPW C C I +L ++ K + + + CS K
Sbjct: 219 IFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQG---SAKCSGSGK 268
Score = 42.7 bits (101), Expect = 3e-05
Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 7/87 (8%)
Query: 26 LPYSTANSELY-----AIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYIN 80
LP+ST N +L + +F + LQ L + ++ I ++ + L +
Sbjct: 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILT 84
Query: 81 NNAITSLPHEL-GDWDSLEVLDIQSNP 106
N I SL SL+ L
Sbjct: 85 GNPIQSLALGAFSGLSSLQKLVAVETN 111
Score = 40.7 bits (96), Expect = 1e-04
Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL 91
E+ I +++L +L TL N + + +F+ SL++ + SL +
Sbjct: 61 RCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFP 119
Query: 92 -GDWDSLEVLDIQSN 105
G +L+ L++ N
Sbjct: 120 IGHLKTLKELNVAHN 134
Score = 38.0 bits (89), Expect = 0.001
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 37 AIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDS 96
++ F L +LQ L L + + + +LKE + +N I S + +
Sbjct: 90 SLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLP-EYFSN 147
Query: 97 ---LEVLDIQSN 105
LE LD+ SN
Sbjct: 148 LTNLEHLDLSSN 159
Score = 35.3 bits (82), Expect = 0.008
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 41 NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVL 100
+L L+ L N +F P F+N +L+ +++N I S+ D L +
Sbjct: 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC--TDLRVLHQM 175
Query: 101 DI 102
+
Sbjct: 176 PL 177
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 59.2 bits (144), Expect = 7e-11
Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 45 NLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQS 104
L+TL + N KL F+ P F + + + NN + + L +LE D++
Sbjct: 189 VFAKLKTLDLSSN-KLAFMGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG 246
Query: 105 NPWTCDCSIQWL 116
N + C +
Sbjct: 247 NGFHCGTLRDFF 258
Score = 48.8 bits (117), Expect = 3e-07
Identities = 14/74 (18%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL 91
+S L + ++ N++ L + N L+ I L+ +++N + +L
Sbjct: 19 DSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETL-DL 76
Query: 92 GDWDSLEVLDIQSN 105
+L LD+ +N
Sbjct: 77 ESLSTLRTLDLNNN 90
Score = 43.4 bits (103), Expect = 2e-05
Identities = 12/72 (16%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Query: 35 LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDW-SLKEFYINNNAITSLPHELGD 93
+ +R +Q L N ++ ++ +L+ + N I + ++
Sbjct: 132 ITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV- 189
Query: 94 WDSLEVLDIQSN 105
+ L+ LD+ SN
Sbjct: 190 FAKLKTLDLSSN 201
Score = 38.4 bits (90), Expect = 8e-04
Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Query: 45 NLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLP--HELGDWDSLEVLDI 102
+ +Y N K+T + ++ + N I ++ D+LE L++
Sbjct: 118 RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176
Query: 103 QSN 105
Q N
Sbjct: 177 QYN 179
Score = 36.9 bits (86), Expect = 0.002
Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 7/71 (9%)
Query: 35 LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDW 94
L I L+ L + N L + +L+ +NNN + L
Sbjct: 46 LSQISAADLAPFTKLELLNLSSN-VLYETLD--LESLSTLRTLDLNNNYVQELLVGP--- 99
Query: 95 DSLEVLDIQSN 105
S+E L +N
Sbjct: 100 -SIETLHAANN 109
Score = 35.0 bits (81), Expect = 0.010
Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 8/64 (12%)
Query: 42 TFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLD 101
++L L+TL N N + + S++ + NN I+ + G + +
Sbjct: 75 DLESLSTLRTLDLNNN-YVQELLVGP-----SIETLHAANNNISRVSCSRG--QGKKNIY 126
Query: 102 IQSN 105
+ +N
Sbjct: 127 LANN 130
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 59.1 bits (143), Expect = 1e-10
Identities = 23/123 (18%), Positives = 42/123 (34%), Gaps = 7/123 (5%)
Query: 45 NLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQS 104
L+TL + N KL F+ P F + + + NN + + L +LE D++
Sbjct: 189 VFAKLKTLDLSSN-KLAFMGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG 246
Query: 105 NPWTCDCSIQWL-----IDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNPLLSHISGE 159
N + C + + VAK+ C+ P L + +
Sbjct: 247 NGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADR 306
Query: 160 CVK 162
+
Sbjct: 307 LIA 309
Score = 49.5 bits (118), Expect = 2e-07
Identities = 14/74 (18%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL 91
+S L + ++ N++ L + N L+ I L+ +++N + +L
Sbjct: 19 DSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETL-DL 76
Query: 92 GDWDSLEVLDIQSN 105
+L LD+ +N
Sbjct: 77 ESLSTLRTLDLNNN 90
Score = 43.7 bits (103), Expect = 2e-05
Identities = 14/76 (18%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDW-SLKEFYINNNAITSLPH 89
AN+++ +R +Q L N ++ ++ +L+ + N I +
Sbjct: 128 ANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDVKG 186
Query: 90 ELGDWDSLEVLDIQSN 105
++ + L+ LD+ SN
Sbjct: 187 QVV-FAKLKTLDLSSN 201
Score = 38.3 bits (89), Expect = 0.001
Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Query: 41 NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLP-HELGDWDSLEV 99
+++TL+ N ++ + K Y+ NN IT L + G ++
Sbjct: 93 QELLVGPSIETLHAANN-NISRVSCSRGQG---KKNIYLANNKITMLRDLDEGCRSRVQY 148
Query: 100 LDIQSNP 106
LD++ N
Sbjct: 149 LDLKLNE 155
Score = 35.6 bits (82), Expect = 0.009
Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 7/71 (9%)
Query: 35 LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDW 94
L I L+ L + N L + +L+ +NNN + L
Sbjct: 46 LSQISAADLAPFTKLELLNLSSN-VLYETLD--LESLSTLRTLDLNNNYVQELLVGP--- 99
Query: 95 DSLEVLDIQSN 105
S+E L +N
Sbjct: 100 -SIETLHAANN 109
Score = 32.5 bits (74), Expect = 0.079
Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 8/64 (12%)
Query: 42 TFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLD 101
++L L+TL N N + + S++ + NN I+ + + +
Sbjct: 75 DLESLSTLRTLDLNNN-YVQELLVGP-----SIETLHAANNNISRVS--CSRGQGKKNIY 126
Query: 102 IQSN 105
+ +N
Sbjct: 127 LANN 130
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 57.3 bits (139), Expect = 4e-10
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 38 IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSL 97
I L L N ++ I S + +L+E +++NN ++ +P L D L
Sbjct: 208 IELEDLLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLL 266
Query: 98 EVLDIQSNPWT 108
+V+ + +N T
Sbjct: 267 QVVYLHTNNIT 277
Score = 52.7 bits (127), Expect = 1e-08
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 38 IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSL 97
+RK+ FK L +L L N K++ IH +F+ L++ YI+ N + +P L SL
Sbjct: 69 LRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISKNHLVEIPPNL--PSSL 125
Query: 98 EVLDIQSN 105
L I N
Sbjct: 126 VELRIHDN 133
Score = 46.2 bits (110), Expect = 2e-06
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE- 90
N+++ I + F L LQ LY + N L I P ++ L E I++N I +P
Sbjct: 87 NNKISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNLPSS---LVELRIHDNRIRKVPKGV 142
Query: 91 LGDWDSLEVLDIQSNP 106
++ +++ NP
Sbjct: 143 FSGLRNMNCIEMGGNP 158
Score = 44.6 bits (106), Expect = 6e-06
Identities = 15/85 (17%), Positives = 33/85 (38%), Gaps = 9/85 (10%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLP--- 88
++++ I + L L+ L+ + N KL+ + P + L+ Y++ N IT +
Sbjct: 226 HNQIRMIENGSLSFLPTLRELHLDNN-KLSRV-PAGLPDLKLLQVVYLHTNNITKVGVND 283
Query: 89 ----HELGDWDSLEVLDIQSNPWTC 109
+ + +NP
Sbjct: 284 FCPVGFGVKRAYYNGISLFNNPVPY 308
Score = 42.7 bits (101), Expect = 4e-05
Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 34 ELYAIRKNTFKNLLNLQTLYCNFNP-KLTFIHPYSFNNDWSLKEFYINNNAITSLPHELG 92
+ + K F L N+ + NP + + P +F+ L I+ +T +P +L
Sbjct: 134 RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG-LKLNYLRISEAKLTGIPKDL- 191
Query: 93 DWDSLEVLDIQSN 105
++L L + N
Sbjct: 192 -PETLNELHLDHN 203
Score = 40.4 bits (95), Expect = 2e-04
Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 5/73 (6%)
Query: 35 LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGD 93
L I K+ + L L+ + N K+ I L + +N I + + L
Sbjct: 184 LTGIPKDLPETL---NELHLDHN-KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF 239
Query: 94 WDSLEVLDIQSNP 106
+L L + +N
Sbjct: 240 LPTLRELHLDNNK 252
Score = 38.1 bits (89), Expect = 0.001
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 6/73 (8%)
Query: 35 LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDW 94
L I N +L L + N ++ + F+ ++ + N + + E G +
Sbjct: 114 LVEIPPNLPSSL---VELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF 169
Query: 95 D--SLEVLDIQSN 105
D L L I
Sbjct: 170 DGLKLNYLRISEA 182
Score = 34.6 bits (80), Expect = 0.017
Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Query: 48 NLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGDWDSLEVLDIQSN 105
+ L N ++ + F L + NN I+ + + L+ L I N
Sbjct: 55 DTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112
Score = 26.1 bits (58), Expect = 8.7
Identities = 5/43 (11%), Positives = 8/43 (18%), Gaps = 1/43 (2%)
Query: 41 NTFKNLLNLQTLYCNFNP-KLTFIHPYSFNNDWSLKEFYINNN 82
+ NP + P +F N
Sbjct: 288 GFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 56.2 bits (136), Expect = 8e-10
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 35 LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDW 94
+ + + K L NL L +FN ++ + S N L+E ++NNN + +P L D
Sbjct: 204 ITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADH 262
Query: 95 DSLEVLDIQSNP 106
++V+ + +N
Sbjct: 263 KYIQVVYLHNNN 274
Score = 51.9 bits (125), Expect = 2e-08
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 37 AIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDS 96
I+ FKNL NL TL N K++ I P +F L+ Y++ N + LP ++ +
Sbjct: 66 EIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKNQLKELPEKM--PKT 122
Query: 97 LEVLDIQSN 105
L+ L + N
Sbjct: 123 LQELRVHEN 131
Score = 46.5 bits (111), Expect = 2e-06
Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 9/85 (10%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLP--- 88
+ + A+ + N +L+ L+ N N KL + P + ++ Y++NN I+++
Sbjct: 225 FNSISAVDNGSLANTPHLRELHLNNN-KLVKV-PGGLADHKYIQVVYLHNNNISAIGSND 282
Query: 89 ----HELGDWDSLEVLDIQSNPWTC 109
S + + SNP
Sbjct: 283 FCPPGYNTKKASYSGVSLFSNPVQY 307
Score = 45.8 bits (109), Expect = 3e-06
Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE- 90
N+++ I F L+ L+ LY + N +L + L+E ++ N IT +
Sbjct: 85 NNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKMPKT---LQELRVHENEITKVRKSV 140
Query: 91 LGDWDSLEVLDIQSNP 106
+ + V+++ +NP
Sbjct: 141 FNGLNQMIVVELGTNP 156
Score = 44.6 bits (106), Expect = 6e-06
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 34 ELYAIRKNTFKNLLNLQTLYCNFNP-KLTFIHPYSFNNDWSLKEFYINNNAITSLPHELG 92
E+ +RK+ F L + + NP K + I +F L I + IT++P L
Sbjct: 132 EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL- 190
Query: 93 DWDSLEVLDIQSN 105
SL L + N
Sbjct: 191 -PPSLTELHLDGN 202
Score = 40.8 bits (96), Expect = 1e-04
Identities = 13/90 (14%), Positives = 30/90 (33%), Gaps = 21/90 (23%)
Query: 38 IRKNTFKNLLNLQTLYCNFNP--------------------KLTFIHPYSFNNDWSLKEF 77
I F+ + L + K+T + S +L +
Sbjct: 162 IENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKL 221
Query: 78 YINNNAITSLPHE-LGDWDSLEVLDIQSNP 106
++ N+I+++ + L + L L + +N
Sbjct: 222 GLSFNSISAVDNGSLANTPHLRELHLNNNK 251
Score = 34.2 bits (79), Expect = 0.020
Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 48 NLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSL-PHELGDWDSLEVLDIQSN 105
+ L N K+T I F N +L + NN I+ + P LE L + N
Sbjct: 53 DTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110
Score = 32.7 bits (75), Expect = 0.062
Identities = 7/73 (9%), Positives = 19/73 (26%), Gaps = 8/73 (10%)
Query: 41 NTFKNLLNLQTLYCNFN-----PKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWD 95
+ +Q +Y + N F P S + +N + + +
Sbjct: 257 GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR 316
Query: 96 ---SLEVLDIQSN 105
+ + +
Sbjct: 317 CVYVRAAVQLGNY 329
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 54.7 bits (132), Expect = 3e-09
Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 8/99 (8%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGDWDSLEVLD 101
L LQ LY + N KL + S L I+ N + S+P SL+ +
Sbjct: 447 SLFLPRLQELYISRN-KLKTLPDASLFP--VLLVMKISRNQLKSVPDGIFDRLTSLQKIW 503
Query: 102 IQSNPWTCDCS-IQWLIDYVAKRQRTDPELNYNLHCSQP 139
+ +NPW C C I +L ++ K + + + CS
Sbjct: 504 LHTNPWDCSCPRIDYLSRWLNKNSQKEQG---SAKCSGS 539
Score = 45.1 bits (107), Expect = 6e-06
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 38 IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGDWDS 96
I + NLQ L + ++ I +F + SL+ +++N ++SL G S
Sbjct: 41 IGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS 99
Query: 97 LEVLDIQSNP 106
L+ L++ NP
Sbjct: 100 LKYLNLMGNP 109
Score = 43.6 bits (103), Expect = 2e-05
Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Query: 41 NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVL 100
L NL +L + N + P S ++ +++ I + + +LEVL
Sbjct: 381 EILLTLKNLTSLDISRN-TFHPM-PDSCQWPEKMRFLNLSSTGIRVVKTCI--PQTLEVL 436
Query: 101 DIQSN 105
D+ +N
Sbjct: 437 DVSNN 441
Score = 40.9 bits (96), Expect = 1e-04
Identities = 14/75 (18%), Positives = 24/75 (32%), Gaps = 3/75 (4%)
Query: 33 SELYAIRKNTFKNLLNLQTLYCNFNPKLTFI--HPYSFNNDWSLKEFYINNNAITSLPHE 90
E Y +LQTL + N L + +L I+ N +P
Sbjct: 347 VEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDS 405
Query: 91 LGDWDSLEVLDIQSN 105
+ + L++ S
Sbjct: 406 CQWPEKMRFLNLSST 420
Score = 40.5 bits (95), Expect = 2e-04
Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPH-- 89
+S + I + F +L +L+ L + N L+ + F SLK + N +L
Sbjct: 59 SSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS 117
Query: 90 ELGDWDSLEVLDIQSN 105
+ +L+ L I +
Sbjct: 118 LFPNLTNLQTLRIGNV 133
Score = 40.1 bits (94), Expect = 3e-04
Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 6/92 (6%)
Query: 31 ANSELYAIRKNTFKNLLNLQTLY--CNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLP 88
NS+++ + + ++L +L+ L N + + SL+ ++ N + S+
Sbjct: 318 ENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQ 377
Query: 89 HELG---DWDSLEVLDIQSNP-WTCDCSIQWL 116
+L LDI N S QW
Sbjct: 378 KTGEILLTLKNLTSLDISRNTFHPMPDSCQWP 409
Score = 39.7 bits (93), Expect = 4e-04
Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Query: 42 TFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGDWDSLEVL 100
F NL NLQTL + I F SL E I ++ + + L + L
Sbjct: 118 LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL 177
Query: 101 DIQSN 105
+ +
Sbjct: 178 TLHLS 182
Score = 38.9 bits (91), Expect = 6e-04
Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Query: 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYI-NNNAITSLPH 89
+++ L ++ + F L +L+ L NP T F N +L+ I N + +
Sbjct: 82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR 141
Query: 90 E-LGDWDSLEVLDIQSN 105
SL L+I++
Sbjct: 142 IDFAGLTSLNELEIKAL 158
Score = 37.8 bits (88), Expect = 0.002
Identities = 10/65 (15%), Positives = 23/65 (35%), Gaps = 7/65 (10%)
Query: 41 NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVL 100
++ + ++ L + + + L+ ++NN + S L L+ L
Sbjct: 404 DSCQWPEKMRFLNLSST-GIRVVKTCIPQT---LEVLDVSNNNLDSFSLFLP---RLQEL 456
Query: 101 DIQSN 105
I N
Sbjct: 457 YISRN 461
Score = 36.6 bits (85), Expect = 0.005
Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 2/75 (2%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL 91
SE + + + ++ L+ L + ++ +K + N+ + +P
Sbjct: 271 PSESDVVSELGKVETVTIRRLHIPQF-YLFYDLSTVYSLLEKVKRITVENSKVFLVPCSF 329
Query: 92 GDW-DSLEVLDIQSN 105
SLE LD+ N
Sbjct: 330 SQHLKSLEFLDLSEN 344
Score = 33.5 bits (77), Expect = 0.040
Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 48 NLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGDWDSLEVLDIQSN 105
+++L +FN K+T+I +L+ + ++ I ++ + SLE LD+ N
Sbjct: 27 AMKSLDLSFN-KITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84
Score = 31.2 bits (71), Expect = 0.21
Identities = 5/54 (9%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 35 LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLP 88
L + + K++ ++ L + + + F+ + S++ + + +
Sbjct: 160 LRNYQSQSLKSIRDIHHLTLHLS-ESAFLLEIFADILSSVRYLELRDTNLARFQ 212
Score = 26.6 bits (59), Expect = 6.4
Identities = 3/60 (5%), Positives = 19/60 (31%), Gaps = 1/60 (1%)
Query: 47 LNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDW-DSLEVLDIQSN 105
L L + + +++ +I + + + ++ + ++++
Sbjct: 261 CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS 320
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 52.7 bits (127), Expect = 1e-08
Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE- 90
+ L + ++F NL + + LT+I P + LK I N + P
Sbjct: 65 DVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLT 124
Query: 91 -LGDWDSLEVLDIQSNP 106
+ D +L+I NP
Sbjct: 125 KVYSTDIFFILEITDNP 141
Score = 47.3 bits (113), Expect = 6e-07
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 38 IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYI-NNNAITSLPHE-LGDWD 95
I + F NL N+ +Y + + L + +SF N + I N +T + + L +
Sbjct: 46 IPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELP 105
Query: 96 SLEVLDIQSN 105
L+ L I +
Sbjct: 106 LLKFLGIFNT 115
Score = 46.2 bits (110), Expect = 2e-06
Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 38 IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWS-LKEFYINNNAITSLPHELGDWDS 96
++ F N L +Y N N LT I +F +S ++ ++T+LP + +
Sbjct: 171 VQGYAF-NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKG--LEH 227
Query: 97 LEVLDIQSNP 106
L+ L ++
Sbjct: 228 LKELIARNTW 237
Score = 34.6 bits (80), Expect = 0.014
Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 1/66 (1%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNN-DWSLKEFYINNNAITSLPHELGDWDSLEVLD 101
+ L NP +T I +F + NN TS+ + L+ +
Sbjct: 126 VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVY 185
Query: 102 IQSNPW 107
+ N +
Sbjct: 186 LNKNKY 191
Score = 30.4 bits (69), Expect = 0.33
Identities = 11/64 (17%), Positives = 27/64 (42%), Gaps = 9/64 (14%)
Query: 48 NLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYIN-NNAITSLP----HELGDWDSLEVLDI 102
+ QTL L I ++F+N ++ Y++ + + L + L + ++I
Sbjct: 32 STQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNL---SKVTHIEI 87
Query: 103 QSNP 106
++
Sbjct: 88 RNTR 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 52.1 bits (125), Expect = 3e-08
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL 91
N L I + F NL L + L +I+P +F N +L+ I+N I LP
Sbjct: 64 NDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVH 123
Query: 92 GDW-DSLEVLDIQSNP 106
+LDIQ N
Sbjct: 124 KIHSLQKVLLDIQDNI 139
Score = 48.7 bits (116), Expect = 4e-07
Identities = 18/106 (16%), Positives = 27/106 (25%), Gaps = 21/106 (19%)
Query: 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE 90
+ + I + F N L L + N L + F+ I+ I SLP
Sbjct: 162 NKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY 220
Query: 91 -LGDWDSLEVLDIQ-------------------SNPWTCDCSIQWL 116
L + L + P C W
Sbjct: 221 GLENLKKLRARSTYNLKKLPTLEKLVALMEASLTYPSHCCAFANWR 266
Score = 46.0 bits (109), Expect = 2e-06
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 38 IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYI-NNNAITSLPHE-LGDWD 95
I+K F +L+ + + N L I F+N L E I N + + E +
Sbjct: 45 IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLP 104
Query: 96 SLEVLDIQSN 105
+L+ L I +
Sbjct: 105 NLQYLLISNT 114
Score = 28.6 bits (64), Expect = 1.4
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 48 NLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITS 86
N L KL I +F+ L++ I+ N +
Sbjct: 31 NAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLE 68
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 51.6 bits (124), Expect = 4e-08
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 42 TFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLD 101
N L + ++N +L I + F L+ YI+NN + +L +L+VLD
Sbjct: 243 WLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLD 301
Query: 102 IQSN 105
+ N
Sbjct: 302 LSHN 305
Score = 50.0 bits (120), Expect = 1e-07
Identities = 23/132 (17%), Positives = 43/132 (32%), Gaps = 28/132 (21%)
Query: 34 ELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGD 93
EL I + F + L+ LY + N +L + +LK +++N + +
Sbjct: 259 ELEKIMYHPFVKMQRLERLYISNN-RLVAL-NLYGQPIPTLKVLDLSHNHLLHVERNQPQ 316
Query: 94 WDSLEVLDIQSN---------------------PWTCDCSIQWLIDYVAKRQRTDPELNY 132
+D LE L + N W C+ + R D +
Sbjct: 317 FDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRN--VARPAVD---DA 371
Query: 133 NLHCSQPVKFSN 144
+ HC + +
Sbjct: 372 DQHCKIDYQLEH 383
Score = 48.9 bits (117), Expect = 3e-07
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL 91
+ ++ I F +Q LY FN + ++ P+ F N L + N ++SLP +
Sbjct: 78 DLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI 136
Query: 92 -GDWDSLEVLDIQSN 105
+ L L + +N
Sbjct: 137 FHNTPKLTTLSMSNN 151
Score = 47.7 bits (114), Expect = 7e-07
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL 91
NS + + + ++ L N ++ I Y+F ++++ Y+ NAI LP +
Sbjct: 54 NSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV 112
Query: 92 GDW-DSLEVLDIQSN 105
L VL ++ N
Sbjct: 113 FQNVPLLTVLVLERN 127
Score = 45.0 bits (107), Expect = 6e-06
Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 35 LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGD 93
+ + + F+N+ L L N L+ + F+N L ++NN + + +
Sbjct: 105 IRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 163
Query: 94 WDSLEVLDIQSN 105
SL+ L + SN
Sbjct: 164 TTSLQNLQLSSN 175
Score = 42.7 bits (101), Expect = 3e-05
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 34 ELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGD 93
+L ++ + F N L TL + N L I +F SL+ +++N +T + L
Sbjct: 128 DLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSL 184
Query: 94 WDSLEVLDIQSN 105
SL ++ N
Sbjct: 185 IPSLFHANVSYN 196
Score = 36.6 bits (85), Expect = 0.004
Identities = 17/87 (19%), Positives = 34/87 (39%), Gaps = 19/87 (21%)
Query: 35 LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNN----------------DWSLKEFY 78
L I +TF+ +LQ L + N +LT + + +++E
Sbjct: 153 LERIEDDTFQATTSLQNLQLSSN-RLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELD 211
Query: 79 INNNAITSLPHELGDWDSLEVLDIQSN 105
++N+I + + L +L +Q N
Sbjct: 212 ASHNSINVVRGPVN--VELTILKLQHN 236
Score = 35.8 bits (83), Expect = 0.006
Identities = 10/65 (15%), Positives = 24/65 (36%), Gaps = 5/65 (7%)
Query: 41 NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVL 100
+T + ++ L + N + + L + +N +T L ++ L +
Sbjct: 199 STLAIPIAVEELDASHN-SINVVRGPVNVE---LTILKLQHNNLTDTA-WLLNYPGLVEV 253
Query: 101 DIQSN 105
D+ N
Sbjct: 254 DLSYN 258
Score = 28.5 bits (64), Expect = 1.8
Identities = 7/66 (10%), Positives = 23/66 (34%), Gaps = 2/66 (3%)
Query: 41 NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGDWDSLEV 99
+ + ++ + + + + + K N+ + LP L + +E+
Sbjct: 15 SNLQYDCVFYDVHIDMQTQDVY-FGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVEL 73
Query: 100 LDIQSN 105
L++
Sbjct: 74 LNLNDL 79
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 51.1 bits (122), Expect = 7e-08
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 42 TFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLD 101
N L + ++N +L I + F L+ YI+NN + +L +L+VLD
Sbjct: 249 WLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLD 307
Query: 102 IQSN 105
+ N
Sbjct: 308 LSHN 311
Score = 48.0 bits (114), Expect = 6e-07
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL 91
+ ++ I F +Q LY FN + ++ P+ F N L + N ++SLP +
Sbjct: 84 DLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI 142
Query: 92 -GDWDSLEVLDIQSN 105
+ L L + +N
Sbjct: 143 FHNTPKLTTLSMSNN 157
Score = 48.0 bits (114), Expect = 6e-07
Identities = 23/144 (15%), Positives = 43/144 (29%), Gaps = 30/144 (20%)
Query: 34 ELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGD 93
EL I + F + L+ LY + N +L + +LK +++N + +
Sbjct: 265 ELEKIMYHPFVKMQRLERLYISNN-RLVAL-NLYGQPIPTLKVLDLSHNHLLHVERNQPQ 322
Query: 94 WDSLEVLDIQSN---------------------PWTCDCSIQWLIDYVAKRQRTDPELNY 132
+D LE L + N W C+ R P ++
Sbjct: 323 FDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRALF------RNVARPAVDD 376
Query: 133 N-LHCSQPVKFSNVHLLSNPLLSH 155
HC + + +
Sbjct: 377 ADQHCKIDYQLEHGLCCKESDKPY 400
Score = 46.8 bits (111), Expect = 1e-06
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL 91
NS + + + ++ L N ++ I Y+F ++++ Y+ NAI LP +
Sbjct: 60 NSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV 118
Query: 92 GDW-DSLEVLDIQSN 105
L VL ++ N
Sbjct: 119 FQNVPLLTVLVLERN 133
Score = 44.9 bits (106), Expect = 6e-06
Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 35 LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDW 94
+ + + F+N+ L L N L+ + F+N L ++NN + + +
Sbjct: 111 IRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 169
Query: 95 -DSLEVLDIQSN 105
SL+ L + SN
Sbjct: 170 TTSLQNLQLSSN 181
Score = 44.1 bits (104), Expect = 1e-05
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 35 LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDW 94
L ++ + F N L TL + N L I +F SL+ +++N +T + L
Sbjct: 135 LSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLI 191
Query: 95 DSLEVLDIQSN 105
SL ++ N
Sbjct: 192 PSLFHANVSYN 202
Score = 37.6 bits (87), Expect = 0.002
Identities = 17/87 (19%), Positives = 34/87 (39%), Gaps = 19/87 (21%)
Query: 35 LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNN----------------DWSLKEFY 78
L I +TF+ +LQ L + N +LT + + +++E
Sbjct: 159 LERIEDDTFQATTSLQNLQLSSN-RLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELD 217
Query: 79 INNNAITSLPHELGDWDSLEVLDIQSN 105
++N+I + + L +L +Q N
Sbjct: 218 ASHNSINVVRGPVN--VELTILKLQHN 242
Score = 35.3 bits (81), Expect = 0.013
Identities = 10/65 (15%), Positives = 24/65 (36%), Gaps = 5/65 (7%)
Query: 41 NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVL 100
+T + ++ L + N + + L + +N +T L ++ L +
Sbjct: 205 STLAIPIAVEELDASHN-SINVVRGPVNVE---LTILKLQHNNLTDTAW-LLNYPGLVEV 259
Query: 101 DIQSN 105
D+ N
Sbjct: 260 DLSYN 264
Score = 28.0 bits (62), Expect = 2.8
Identities = 7/62 (11%), Positives = 20/62 (32%), Gaps = 2/62 (3%)
Query: 45 NLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGDWDSLEVLDIQ 103
++ + + + + K N+ + LP L + +E+L++
Sbjct: 25 YDCVFYDVHIDMQTQDVYFGF-EDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 83
Query: 104 SN 105
Sbjct: 84 DL 85
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 49.3 bits (118), Expect = 1e-07
Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL 91
++L ++ F L L+ L N N +L I +F+ +L+ ++ N + S+PH
Sbjct: 116 GNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGA 174
Query: 92 GD-WDSLEVLDIQSNPWTCDCS-IQWLIDYVAKRQ 124
D L+ + + N + C I +L ++ +
Sbjct: 175 FDRLGKLQTITLFGNQFDCSRCEILYLSQWIRENS 209
Score = 38.5 bits (90), Expect = 7e-04
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL 91
++L + F +L L TL N +L + F++ L + Y+ N + SLP
Sbjct: 68 YNQLQTLSAGVFDDLTELGTLGLANN-QLASLPLGVFDHLTQLDKLYLGGNQLKSLPS-- 124
Query: 92 GDWDS---LEVLDIQSN 105
G +D L+ L + +N
Sbjct: 125 GVFDRLTKLKELRLNTN 141
Score = 28.9 bits (65), Expect = 1.1
Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Query: 50 QTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDW-DSLEVLDIQSN 105
+ L L + +F L ++ N + +L + D L L + +N
Sbjct: 38 EKLDLQST-GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 47.5 bits (114), Expect = 3e-07
Identities = 7/62 (11%), Positives = 15/62 (24%), Gaps = 2/62 (3%)
Query: 45 NLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQS 104
L L + +LT + + + +T L +G+
Sbjct: 94 ELPEKSKLQEIYQ-ELTEL-KAAVGELPEKSKLQEIYQELTQLKAAVGELPDQSKQQQIY 151
Query: 105 NP 106
Sbjct: 152 QE 153
Score = 44.8 bits (107), Expect = 3e-06
Identities = 8/61 (13%), Positives = 16/61 (26%), Gaps = 2/61 (3%)
Query: 45 NLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQS 104
L L + +LT + + + +T L +G+ L
Sbjct: 25 ELPEKSKLQEIYQ-ELTRL-KAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIY 82
Query: 105 N 105
Sbjct: 83 Q 83
Score = 44.0 bits (105), Expect = 5e-06
Identities = 8/65 (12%), Positives = 16/65 (24%), Gaps = 2/65 (3%)
Query: 41 NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVL 100
L L + +LT + + + +T L +G+ L
Sbjct: 44 AAVGELPEKSKLQEIYQ-ELTRL-KAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKL 101
Query: 101 DIQSN 105
Sbjct: 102 QEIYQ 106
Score = 35.9 bits (84), Expect = 0.003
Identities = 4/33 (12%), Positives = 8/33 (24%)
Query: 73 SLKEFYINNNAITSLPHELGDWDSLEVLDIQSN 105
+ +T L +G+ L
Sbjct: 5 EKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQ 37
Score = 35.5 bits (83), Expect = 0.005
Identities = 6/48 (12%), Positives = 12/48 (25%), Gaps = 2/48 (4%)
Query: 45 NLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELG 92
L L + +LT + + + +T L
Sbjct: 117 ELPEKSKLQEIYQ-ELTQL-KAAVGELPDQSKQQQIYQELTDLKTAFE 162
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 47.6 bits (114), Expect = 8e-07
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 41 NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVL 100
+ L+NLQ+L + + + P S N +LK I N+ +++L + LE L
Sbjct: 177 GEHQGLVNLQSLRLEWT-GIRSL-PASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEEL 234
Query: 101 DIQSN 105
D++
Sbjct: 235 DLRGC 239
Score = 46.1 bits (110), Expect = 2e-06
Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Query: 41 NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYI-NNNAITSLPHELGDWDSLEV 99
+L L+ L L P F LK + + + + +LP ++ LE
Sbjct: 223 PAIHHLPKLEELDLRGCTALRNY-PPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEK 281
Query: 100 LDIQSNP 106
LD++
Sbjct: 282 LDLRGCV 288
Score = 44.9 bits (107), Expect = 6e-06
Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Query: 41 NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVL 100
+ L +LQ + + L + P + L+ + N + +LP + + L L
Sbjct: 98 DQAFRLSHLQHMTIDAA-GLMEL-PDTMQQFAGLETLTLARNPLRALPASIASLNRLREL 155
Query: 101 DIQSNP 106
I++ P
Sbjct: 156 SIRACP 161
Score = 42.2 bits (100), Expect = 4e-05
Identities = 11/61 (18%), Positives = 17/61 (27%), Gaps = 2/61 (3%)
Query: 45 NLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQS 104
L L P L+ I+ + LP + + LE L +
Sbjct: 79 TQPGRVALELRSV-PLPQF-PDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLAR 136
Query: 105 N 105
N
Sbjct: 137 N 137
Score = 39.2 bits (92), Expect = 4e-04
Identities = 8/66 (12%), Positives = 22/66 (33%), Gaps = 2/66 (3%)
Query: 41 NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNA-ITSLPHELGDWDSLEV 99
F L+ L L + P + L++ + ++ LP + + +
Sbjct: 247 PIFGGRAPLKRLILKDCSNLLTL-PLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI 305
Query: 100 LDIQSN 105
+ + +
Sbjct: 306 ILVPPH 311
Score = 34.5 bits (80), Expect = 0.016
Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 12/75 (16%)
Query: 41 NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYI-NNNAITSLPHELGDWD---- 95
+T + L+TL N L + P S + L+E I +T LP L D
Sbjct: 121 DTMQQFAGLETLTLARN-PLRAL-PASIASLNRLRELSIRACPELTELPEPLASTDASGE 178
Query: 96 -----SLEVLDIQSN 105
+L+ L ++
Sbjct: 179 HQGLVNLQSLRLEWT 193
Score = 32.2 bits (74), Expect = 0.093
Identities = 6/51 (11%), Positives = 12/51 (23%), Gaps = 1/51 (1%)
Query: 41 NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL 91
L L+ L L+ + P + + + L
Sbjct: 271 LDIHRLTQLEKLDLRGCVNLSRL-PSLIAQLPANCIILVPPHLQAQLDQHR 320
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 46.1 bits (110), Expect = 1e-06
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGD-WDSLEVLD 101
F L L LY + N KL + F+ LKE ++ N + S+P + D SL+ +
Sbjct: 72 FDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW 130
Query: 102 IQSNPWTCDCS-IQWLIDYVAKRQRTDP 128
+ +NPW C C I +L ++ K + +
Sbjct: 131 LHTNPWDCSCPRIDYLSRWLNKNSQKEQ 158
Score = 28.0 bits (63), Expect = 1.8
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
Query: 50 QTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSL---EVLDIQSN 105
L N KL + F+ L + ++ N I SLP G +D L +L + N
Sbjct: 31 TRLELESN-KLQSLPHGVFDKLTQLTKLSLSQNQIQSLPD--GVFDKLTKLTILYLHEN 86
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.4 bits (112), Expect = 1e-06
Identities = 30/191 (15%), Positives = 64/191 (33%), Gaps = 69/191 (36%)
Query: 29 STANSELYAI------RKNTFKNLLNLQTLYCNFNPKLT-FIHPYSFNNDWSLKEFYINN 81
N++L AI + F+ L + LY ++ + I +
Sbjct: 150 GEGNAQLVAIFGGQGNTDDYFEEL---RDLYQTYHVLVGDLIKFSA-------------- 192
Query: 82 NAITSLPHELGDWDSL--EVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQP 139
++ L D + + + L+I ++WL + P+ +Y L S P
Sbjct: 193 ETLSELIRTTLDAEKVFTQGLNI----------LEWL-----ENPSNTPDKDY-L-LSIP 235
Query: 140 VKFSNVHLLS-------------NP--LLSHISG--ECVKG---ALVISQLST--QFYKL 177
+ + ++ P L S++ G +G A+ I++ + F+
Sbjct: 236 ISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVS 295
Query: 178 YP----LLFIM 184
+LF +
Sbjct: 296 VRKAITVLFFI 306
Score = 33.5 bits (76), Expect = 0.053
Identities = 39/225 (17%), Positives = 71/225 (31%), Gaps = 81/225 (36%)
Query: 19 YTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPK----LT-FIHP------YS 67
Y+ M + + + FK + T Y + K T F P +
Sbjct: 1688 YSAMIFE-----TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKA 1742
Query: 68 FNNDWSLKEFYINNNAITSLPHELGDWDSL----EVLDIQS------------------- 104
D + I +A + H LG++ +L +V+ I+S
Sbjct: 1743 AFEDLK-SKGLIPADATFA-GHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRD 1800
Query: 105 ------------NPWT-----CDCSIQWLIDYVAKRQRTDPEL-NYNLHCSQPVKFSNVH 146
NP ++Q++++ V KR E+ NYN+ Q V
Sbjct: 1801 ELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYV------ 1854
Query: 147 LLSNPLLSHISGECVKGAL-----VISQLSTQFYKLYPLLFIMTL 186
+G+ AL V++ + Q + L ++L
Sbjct: 1855 ---------AAGD--LRALDTVTNVLNFIKLQKIDIIELQKSLSL 1888
Score = 27.7 bits (61), Expect = 3.1
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Query: 151 PL-LSHISGEC---VKGALVI--SQLSTQFYKLYP 179
PL LSH S E V A SQL QF K+ P
Sbjct: 8 PLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILP 42
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 46.8 bits (111), Expect = 2e-06
Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 48 NLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGDWDSLEVLDIQSNP 106
++ L + N K+ I + +L+E + +N + S+P SL+ + + +NP
Sbjct: 422 RIKVLDLHSN-KIKSIPKQVVKLE-ALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNP 479
Query: 107 WTCDCS-IQWLIDYVAKRQRTDPE 129
W C C I +L ++ K + +
Sbjct: 480 WDCSCPRIDYLSRWLNKNSQKEQG 503
Score = 41.8 bits (98), Expect = 8e-05
Identities = 15/82 (18%), Positives = 25/82 (30%), Gaps = 4/82 (4%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL 91
S + + L + N LT + + L+ + N + L
Sbjct: 309 VSGTRMVHMLCPSKISPFLHLDFSNN-LLTDTVFENCGHLTELETLILQMNQLKELSKIA 367
Query: 92 GDWD---SLEVLDIQSNPWTCD 110
SL+ LDI N + D
Sbjct: 368 EMTTQMKSLQQLDISQNSVSYD 389
Score = 40.6 bits (95), Expect = 2e-04
Identities = 11/72 (15%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 38 IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSL 97
+ + +L L+ L + N ++ ++ F + L+ +++N + + +L
Sbjct: 36 LWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNKLVKIS--CHPTVNL 92
Query: 98 EVLDIQSNPWTC 109
+ LD+ N +
Sbjct: 93 KHLDLSFNAFDA 104
Score = 36.4 bits (84), Expect = 0.005
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDI 102
+ +LQ L + N + SL +++N +T ++VLD+
Sbjct: 370 TTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP-PRIKVLDL 428
Query: 103 QSN 105
SN
Sbjct: 429 HSN 431
Score = 32.5 bits (74), Expect = 0.080
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPH-- 89
++ + + + FK L+ L + N KL I S + +LK ++ NA +LP
Sbjct: 54 HNRIQYLDISVFKFNQELEYLDLSHN-KLVKI---SCHPTVNLKHLDLSFNAFDALPICK 109
Query: 90 ELGDWDSLEVLDIQSN 105
E G+ L+ L + +
Sbjct: 110 EFGNMSQLKFLGLSTT 125
Score = 29.8 bits (67), Expect = 0.56
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 48 NLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDW-DSLEVLDIQSN 105
L + N ++ + + L+ I++N I L + + LE LD+ N
Sbjct: 22 KTTILNISQN-YISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79
Score = 29.1 bits (65), Expect = 1.2
Identities = 20/147 (13%), Positives = 40/147 (27%), Gaps = 1/147 (0%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGDWDSLEVLD 101
+NL+ L +FN F N LK ++ + + + +VL
Sbjct: 86 CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLL 145
Query: 102 IQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNPLLSHISGECV 161
+ + + L D+ + N H V V L + + +
Sbjct: 146 VLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNK 205
Query: 162 KGALVISQLSTQFYKLYPLLFIMTLLL 188
+ Q L + +
Sbjct: 206 CSYFLSILAKLQTNPKLSNLTLNNIET 232
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 46.0 bits (109), Expect = 3e-06
Identities = 23/112 (20%), Positives = 37/112 (33%), Gaps = 15/112 (13%)
Query: 48 NLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSN-- 105
L+ L + N +LT + P + L + N +T LP L S ++++ N
Sbjct: 242 ELKELMVSGN-RLTSL-PMLPSG---LLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPL 296
Query: 106 ---PWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNPLLS 154
I Y R D S P + +HL + L
Sbjct: 297 SERTLQALREITSAPGYSGPIIRFD-----MAGASAPRETRALHLAAADWLV 343
Score = 41.0 bits (96), Expect = 1e-04
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 5/58 (8%)
Query: 48 NLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSN 105
++ TL N LT + P L+ ++ N +TSLP L +
Sbjct: 62 HITTLVIPDN-NLTSL-PALPPE---LRTLEVSGNQLTSLPVLPPGLLELSIFSNPLT 114
Score = 39.5 bits (92), Expect = 5e-04
Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 48 NLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQ 103
L L+ N +LT + P + L+E +++N + SLP + L + +
Sbjct: 162 ELCKLWAYNN-QLTSL-PMLPSG---LQELSVSDNQLASLPTLPSELYKLWAYNNR 212
Score = 37.6 bits (87), Expect = 0.002
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 46 LLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSN 105
L L+ N +LT + P + LKE ++ N +TSLP L+ L + N
Sbjct: 200 PSELYKLWAYNN-RLTSL-PALPSG---LKELIVSGNRLTSLPVLPS---ELKELMVSGN 251
Score = 36.8 bits (85), Expect = 0.003
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 6/64 (9%)
Query: 41 NTFKNLL-NLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEV 99
L L L+ N +LT + P L+E +++N + SLP + L
Sbjct: 114 THLPALPSGLCKLWIFGN-QLTSL-PVLPPG---LQELSVSDNQLASLPALPSELCKLWA 168
Query: 100 LDIQ 103
+ Q
Sbjct: 169 YNNQ 172
Score = 31.0 bits (70), Expect = 0.27
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 73 SLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWT 108
+ + +T+LP L + L I N T
Sbjct: 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLT 74
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 45.3 bits (107), Expect = 7e-06
Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 2/74 (2%)
Query: 33 SELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHP-YSFNNDWSLKEFYINNNAITSLPHEL 91
+ +KN L T+ FN KLT + + L ++ N +S P +
Sbjct: 714 ENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQP 772
Query: 92 GDWDSLEVLDIQSN 105
+ L+ I+
Sbjct: 773 LNSSQLKAFGIRHQ 786
Score = 42.2 bits (99), Expect = 6e-05
Identities = 9/67 (13%), Positives = 23/67 (34%), Gaps = 3/67 (4%)
Query: 42 TFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPH--ELGDWDSLEV 99
F + L L ++N ++ I ++ ++N + +P+ +
Sbjct: 590 AFGTNVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGS 648
Query: 100 LDIQSNP 106
+D N
Sbjct: 649 VDFSYNK 655
Score = 41.4 bits (97), Expect = 1e-04
Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 7/71 (9%)
Query: 41 NTFKNLLNLQTLYCNFNP-----KLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWD 95
N L+ ++ P SL + I +N I + +L
Sbjct: 770 TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT--P 827
Query: 96 SLEVLDIQSNP 106
L +LDI NP
Sbjct: 828 QLYILDIADNP 838
Score = 40.6 bits (95), Expect = 2e-04
Identities = 12/66 (18%), Positives = 18/66 (27%), Gaps = 3/66 (4%)
Query: 41 NTFKNLLNLQTLYCNFNPKLTFI-HPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEV 99
+ +Q Y +N L S L +N + L G L
Sbjct: 542 DDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTD 599
Query: 100 LDIQSN 105
L + N
Sbjct: 600 LKLDYN 605
Score = 39.5 bits (92), Expect = 5e-04
Identities = 14/75 (18%), Positives = 23/75 (30%), Gaps = 12/75 (16%)
Query: 42 TFKNLLNLQTLYCNFNPKLTFIH---------PYSFNNDWSLKEFYINNNAITSLPHE-- 90
+L LQ+L N + + ++ FY+ N + P
Sbjct: 510 FLYDLPELQSLNIACN-RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASAS 568
Query: 91 LGDWDSLEVLDIQSN 105
L L +LD N
Sbjct: 569 LQKMVKLGLLDCVHN 583
Score = 39.5 bits (92), Expect = 5e-04
Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 9/69 (13%)
Query: 45 NLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE--------LGDWDS 96
+N T+ ++N ++ F + ++NN +TS+P +
Sbjct: 671 KGINASTVTLSYN-EIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYL 729
Query: 97 LEVLDIQSN 105
L +D++ N
Sbjct: 730 LTTIDLRFN 738
Score = 38.7 bits (90), Expect = 0.001
Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 10/77 (12%)
Query: 38 IRKNTFKNLLNLQTLYCNFNPKLTFI-------HPYSFNNDWSLKEFYINNNAITSLPHE 90
F + T+ + N +T I ++ N + L + N +TSL +
Sbjct: 688 FPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDD 746
Query: 91 L--GDWDSLEVLDIQSN 105
L +D+ N
Sbjct: 747 FRATTLPYLSNMDVSYN 763
Score = 37.2 bits (86), Expect = 0.003
Identities = 10/79 (12%), Positives = 29/79 (36%), Gaps = 8/79 (10%)
Query: 34 ELYAIRKNTFKNLLNLQTLYCNFNPKLTFI-HPYSFNNDWSLKEFYINNNAITSLPHELG 92
++ I ++ ++ L + N KL +I + ++ + + + + N I S +
Sbjct: 606 QIEEIPEDFCAFTDQVEGLGFSHN-KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS 664
Query: 93 D------WDSLEVLDIQSN 105
+ + + N
Sbjct: 665 CSMDDYKGINASTVTLSYN 683
Score = 36.0 bits (83), Expect = 0.006
Identities = 19/82 (23%), Positives = 29/82 (35%), Gaps = 19/82 (23%)
Query: 43 FKNLLNLQTLYCNFNP------------------KLTFIHPYSFNNDWSLKEFYI-NNNA 83
+ L LQ +Y +P K S++N L + + N
Sbjct: 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN 503
Query: 84 ITSLPHELGDWDSLEVLDIQSN 105
+T LP L D L+ L+I N
Sbjct: 504 MTQLPDFLYDLPELQSLNIACN 525
Score = 36.0 bits (83), Expect = 0.008
Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 45 NLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQS 104
NL +L N NP++ I S + + N IT + + L+++ +
Sbjct: 399 NLSDLLQDAINRNPEMKPIKKDSRIS-LKDTQIGNLTNRITFISKAIQRLTKLQIIYFAN 457
Query: 105 N 105
+
Sbjct: 458 S 458
Score = 34.1 bits (78), Expect = 0.026
Identities = 17/71 (23%), Positives = 23/71 (32%), Gaps = 9/71 (12%)
Query: 42 TFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYI-------NNNAITSLPHELGDW 94
L L + ++N + P N LK F I N + P +
Sbjct: 748 RATTLPYLSNMDVSYN-CFSSF-PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTC 805
Query: 95 DSLEVLDIQSN 105
SL L I SN
Sbjct: 806 PSLIQLQIGSN 816
Score = 26.8 bits (59), Expect = 7.1
Identities = 6/40 (15%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 67 SFNNDWSLKEFYINNNAIT-SLPHELGDWDSLEVLDIQSN 105
+N+ + + +P +G L+VL ++
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTH 357
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 45.0 bits (106), Expect = 7e-06
Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 6/65 (9%)
Query: 48 NLQTLYCNFNPKLTFIHPYSFNNDWSLKE----FYINNNAITSLPHELGDWDSLEVLDIQ 103
+L+ L + N L + P + +E F N IT +P + D + ++
Sbjct: 181 SLEALDVSTN-LLESL-PAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILE 238
Query: 104 SNPWT 108
NP +
Sbjct: 239 DNPLS 243
Score = 41.1 bits (96), Expect = 1e-04
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Query: 44 KNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQ 103
+ +L+ L + N +LT + P L+ +NN +T LP SLEVL ++
Sbjct: 117 ELPASLKHLDVDNN-QLTML-PELPAL---LEYINADNNQLTMLPELPT---SLEVLSVR 168
Query: 104 SNPWTC 109
+N T
Sbjct: 169 NNQLTF 174
Score = 39.6 bits (92), Expect = 4e-04
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 48 NLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSN 105
L+ + + N +LT + P + L+ + NN +T LP SLE LD+ +N
Sbjct: 141 LLEYINADNN-QLTML-PELPTS---LEVLSVRNNQLTFLPELPE---SLEALDVSTN 190
Score = 38.4 bits (89), Expect = 0.001
Identities = 15/60 (25%), Positives = 20/60 (33%), Gaps = 7/60 (11%)
Query: 46 LLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSN 105
+ L N L+ + + I NA+ SLP SLE LD N
Sbjct: 58 INQFSELQLNRL-NLSSLPDNLPPQ---ITVLEITQNALISLPELPA---SLEYLDACDN 110
Score = 34.6 bits (79), Expect = 0.019
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 8/58 (13%)
Query: 48 NLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSN 105
+ L N L + P + L+ +N +++LP SL+ LD+ +N
Sbjct: 81 QITVLEITQN-ALISL-PELPAS---LEYLDACDNRLSTLPELPA---SLKHLDVDNN 130
Score = 29.9 bits (67), Expect = 0.55
Identities = 8/65 (12%), Positives = 20/65 (30%), Gaps = 6/65 (9%)
Query: 45 NLLNLQT----LYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVL 100
+ + C N ++T I P + + + +N ++S E + +
Sbjct: 201 RNHHSEETEIFFRCREN-RITHI-PENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPD 258
Query: 101 DIQSN 105
Sbjct: 259 YHGPR 263
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 43.5 bits (103), Expect = 1e-05
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGD-WDSLEVLD 101
F L++L+ L+ N KLT + P L ++ N + S+PH D SL
Sbjct: 108 FDRLVHLKELFMCCN-KLTEL-PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAY 165
Query: 102 IQSNPWTCDCS 112
+ NPW C+C
Sbjct: 166 LFGNPWDCECR 176
Score = 32.7 bits (75), Expect = 0.052
Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 27 PYSTANSELY-----AIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINN 81
P + L+ + F +L+NL+ LY N +L + F++ L +
Sbjct: 39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGT 97
Query: 82 NAITSLPHELGDWDSL---EVLDIQSN 105
N +T LP +D L + L + N
Sbjct: 98 NQLTVLPS--AVFDRLVHLKELFMCCN 122
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 44.1 bits (104), Expect = 1e-05
Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDI 102
L L+ L + N ++ + + F + L+ +++N + ++ SL LD+
Sbjct: 72 ISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHNRLQNIS--CCPMASLRHLDL 128
Query: 103 QSNPWTC 109
N +
Sbjct: 129 SFNDFDV 135
Score = 43.7 bits (103), Expect = 2e-05
Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 38 IRKNTFKNL-LNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGDWD 95
+ + F+ L ++ L + N ++ I P + +L+E + +N + S+P
Sbjct: 440 LTGSVFRCLPPKVKVLDLHNN-RIMSI-PKDVTHLQALQELNVASNQLKSVPDGVFDRLT 497
Query: 96 SLEVLDIQSNPWTCDCS-IQWLIDYVAK 122
SL+ + + NPW C C I++L +++ K
Sbjct: 498 SLQYIWLHDNPWDCTCPGIRYLSEWINK 525
Score = 35.6 bits (82), Expect = 0.008
Identities = 15/91 (16%), Positives = 26/91 (28%), Gaps = 7/91 (7%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLP--- 88
S+ I + + L N T + L+ + N + +
Sbjct: 338 ISDTPFIHMVCPPSPSSFTFLNFTQN-VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVA 396
Query: 89 HELGDWDSLEVLDIQSNPWT---CDCSIQWL 116
+ SLE LD+ N D + W
Sbjct: 397 LMTKNMSSLETLDVSLNSLNSHAYDRTCAWA 427
Score = 29.8 bits (67), Expect = 0.62
Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Query: 35 LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPH--ELG 92
+ ++ + F +L+ L + N +L I S SL+ ++ N LP E G
Sbjct: 88 IRSLDFHVFLFNQDLEYLDVSHN-RLQNI---SCCPMASLRHLDLSFNDFDVLPVCKEFG 143
Query: 93 DWDSLEVLDIQSN 105
+ L L + +
Sbjct: 144 NLTKLTFLGLSAA 156
Score = 29.1 bits (65), Expect = 1.3
Identities = 8/48 (16%), Positives = 14/48 (29%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE 90
+ +L+ L +FN F N L ++ L
Sbjct: 117 CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLL 164
Score = 27.9 bits (62), Expect = 2.4
Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 48 NLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDW-DSLEVLDIQSN 105
+ L + N ++ + + L+ +++N I SL + + LE LD+ N
Sbjct: 53 RTKALSLSQN-SISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich
repeat, LRR, system; 2.10A {Petromyzon marinus}
Length = 174
Score = 43.0 bits (102), Expect = 1e-05
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLD- 101
F +L+NLQ LY N N KLT I F+ L + +N+N + S+P G +D+L+ L
Sbjct: 53 FDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNHLKSIPR--GAFDNLKSLTH 109
Query: 102 --IQSNPWTCDCS 112
+ +NPW C+C
Sbjct: 110 IYLYNNPWDCECR 122
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY,
crystallography, immune system; 1.55A {Petromyzon
marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Length = 170
Score = 42.6 bits (101), Expect = 2e-05
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLD- 101
F L L L + N +LT + F+ L + +N+N + S+P G +D+L+ L
Sbjct: 50 FDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDNQLKSIPR--GAFDNLKSLTH 106
Query: 102 --IQSNPWTCDCS 112
+ +NPW C CS
Sbjct: 107 IWLLNNPWDCACS 119
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 42.4 bits (100), Expect = 3e-05
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWD---SLEV 99
F L L+ L N N +L + F+ LK+ + N + S+P G +D SL+
Sbjct: 96 FDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD--GVFDRLTSLQY 152
Query: 100 LDIQSNPWTCDCS 112
+ + NPW C C
Sbjct: 153 IWLHDNPWDCTCP 165
Score = 34.6 bits (80), Expect = 0.012
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 35 LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDW 94
L ++ F L +L LY N KL + FN SL ++ N + SLP+ G +
Sbjct: 40 LKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQLQSLPN--GVF 96
Query: 95 DSL---EVLDIQSN 105
D L + L + +N
Sbjct: 97 DKLTQLKELALNTN 110
Score = 26.9 bits (60), Expect = 4.4
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 50 QTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDW-DSLEVLDIQSN 105
L N L + F+ SL + Y+ N + SLP+ + + SL L++ +N
Sbjct: 31 TYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 42.5 bits (101), Expect = 4e-05
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 41 NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSL-PHELGDWDSLEV 99
N K+L L+ L N +++ I NN L ++NNN + + +G +L
Sbjct: 259 NAVKDLTKLKMLNVGSN-QISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315
Query: 100 LDIQSNPWT 108
L + N T
Sbjct: 316 LFLSQNHIT 324
Score = 41.8 bits (99), Expect = 7e-05
Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDI 102
NL L +L+ N N +L +L +++ N IT + L ++ D
Sbjct: 283 LNNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFLSQNHITDIR-PLASLSKMDSADF 340
Query: 103 QSNP 106
+
Sbjct: 341 ANQV 344
Score = 40.2 bits (95), Expect = 2e-04
Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 3/63 (4%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDI 102
NL + +L N L+ + P +N L + + + + + + L L +
Sbjct: 128 LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVT-PIANLTDLYSLSL 184
Query: 103 QSN 105
N
Sbjct: 185 NYN 187
Score = 39.1 bits (92), Expect = 5e-04
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDI 102
N+ L +L N K+T + P + + L I N I+ + + D L++L++
Sbjct: 217 VANMTRLNSLKIGNN-KITDLSPLANLS--QLTWLEIGTNQISDIN-AVKDLTKLKMLNV 272
Query: 103 QSN 105
SN
Sbjct: 273 GSN 275
Score = 37.9 bits (89), Expect = 0.001
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDI 102
+NL NL+ LY N + ++ I P N + + N S L + L L +
Sbjct: 106 LQNLTNLRELYLNED-NISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTV 162
Query: 103 QSN 105
+
Sbjct: 163 TES 165
Score = 36.0 bits (84), Expect = 0.005
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDI 102
+ L NL+ L N N ++T I P +N L YI N IT + L + +L L +
Sbjct: 62 IEYLTNLEYLNLNGN-QITDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYL 117
Query: 103 QSN 105
+
Sbjct: 118 NED 120
Score = 36.0 bits (84), Expect = 0.006
Identities = 14/63 (22%), Positives = 20/63 (31%), Gaps = 4/63 (6%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDI 102
N+ L L + K+ + P N L +N N I + L SL
Sbjct: 151 LSNMTGLNYLTVTES-KVKDVTP--IANLTDLYSLSLNYNQIEDIS-PLASLTSLHYFTA 206
Query: 103 QSN 105
N
Sbjct: 207 YVN 209
Score = 35.6 bits (83), Expect = 0.007
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDI 102
+L +L N ++T I P N L I NN IT L L + L L+I
Sbjct: 195 LASLTSLHYFTAYVN-QITDITP--VANMTRLNSLKIGNNKITDLS-PLANLSQLTWLEI 250
Query: 103 QSN 105
+N
Sbjct: 251 GTN 253
Score = 32.9 bits (76), Expect = 0.056
Identities = 8/62 (12%), Positives = 20/62 (32%), Gaps = 4/62 (6%)
Query: 44 KNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQ 103
+L +T + S+ + + + S+ + +LE L++
Sbjct: 19 ADLAEGIRAVLQKA-SVT--DVVTQEELESITKLVVAGEKVASIQ-GIEYLTNLEYLNLN 74
Query: 104 SN 105
N
Sbjct: 75 GN 76
Score = 31.0 bits (71), Expect = 0.22
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAIT 85
N++L L NL TL+ + N +T I P + + N I
Sbjct: 296 NNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP--LASLSKMDSADFANQVIK 346
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 42.3 bits (100), Expect = 4e-05
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLD- 101
F L NL L ++N +L + F+ LK+ + N + S+P G +D L L
Sbjct: 153 FDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD--GVFDRLTSLQY 209
Query: 102 --IQSNPWTCDCS 112
+ NPW C C
Sbjct: 210 IWLHDNPWDCTCP 222
Score = 36.1 bits (84), Expect = 0.005
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSL---EV 99
F L NL+ L N +L + F+ +L + +N + SLP G +D L
Sbjct: 105 FDKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK--GVFDKLTNLTE 161
Query: 100 LDIQSN 105
LD+ N
Sbjct: 162 LDLSYN 167
Score = 35.0 bits (81), Expect = 0.011
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDW-DSLEVLD 101
K L NL L N +L + F+ +LKE + N + SLP + D +L L+
Sbjct: 81 LKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139
Query: 102 IQSN 105
+ N
Sbjct: 140 LAHN 143
Score = 28.4 bits (64), Expect = 1.7
Identities = 9/66 (13%), Positives = 23/66 (34%), Gaps = 8/66 (12%)
Query: 42 TFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLP--HELGDWDSLEV 99
T L ++ + N + + + +++ + N + + EL + L
Sbjct: 36 TQNELNSIDQIIANNS-DIKSVQG--IQYLPNVRYLALGGNKLHDISALKELTN---LTY 89
Query: 100 LDIQSN 105
L + N
Sbjct: 90 LILTGN 95
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 42.0 bits (99), Expect = 7e-05
Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 41 NTFKNLLNLQTLYCNFNPKLTFIHP-YSFNNDWSLKEFYINNNAITSLPHELGDWDSLEV 99
FKN L ++ FN KLT + + L ++ N+ + P + + +L+
Sbjct: 482 ENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKG 540
Query: 100 LDIQSN 105
I++
Sbjct: 541 FGIRNQ 546
Score = 41.6 bits (98), Expect = 1e-04
Identities = 10/69 (14%), Positives = 24/69 (34%), Gaps = 1/69 (1%)
Query: 38 IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSL 97
+ + ++ +L N +P+ I S + +N IT + + L
Sbjct: 150 VDYDPREDFSDLIKDCINSDPQQKSI-KKSSRITLKDTQIGQLSNNITFVSKAVMRLTKL 208
Query: 98 EVLDIQSNP 106
+ ++P
Sbjct: 209 RQFYMGNSP 217
Score = 39.6 bits (93), Expect = 4e-04
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 41 NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL-GDWDSLEV 99
+ + + L L C +N +L P +F ++ L + N IT +P G + +E
Sbjct: 324 TSLQKMKKLGMLECLYN-QLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVEN 381
Query: 100 LDIQSN 105
L N
Sbjct: 382 LSFAHN 387
Score = 39.6 bits (93), Expect = 4e-04
Identities = 10/68 (14%), Positives = 25/68 (36%), Gaps = 3/68 (4%)
Query: 41 NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPH--ELGDWDSLE 98
F + + L +L +N ++T I ++ +N + +P+ + +
Sbjct: 347 PAFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMS 405
Query: 99 VLDIQSNP 106
+D N
Sbjct: 406 AIDFSYNE 413
Score = 39.3 bits (92), Expect = 5e-04
Identities = 10/69 (14%), Positives = 26/69 (37%), Gaps = 9/69 (13%)
Query: 45 NLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPH--------ELGDWDS 96
+N+ ++ + N +++ F+ L + N +T +P +
Sbjct: 431 KGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYL 489
Query: 97 LEVLDIQSN 105
L +D++ N
Sbjct: 490 LTSIDLRFN 498
Score = 37.7 bits (88), Expect = 0.002
Identities = 12/63 (19%), Positives = 18/63 (28%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDI 102
+Q +Y +N TF S L N + G L L++
Sbjct: 301 APVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNL 360
Query: 103 QSN 105
N
Sbjct: 361 AYN 363
Score = 36.9 bits (86), Expect = 0.003
Identities = 16/75 (21%), Positives = 25/75 (33%), Gaps = 10/75 (13%)
Query: 40 KNTFKNLLNLQTLYCNFNPKLTFIH-------PYSFNNDWSLKEFYINNNAITSLPHELG 92
K F L ++ N LT I +F N + L + N +T L +
Sbjct: 450 KELFSTGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFR 508
Query: 93 DWD--SLEVLDIQSN 105
L +D+ N
Sbjct: 509 ATTLPYLVGIDLSYN 523
Score = 35.8 bits (83), Expect = 0.008
Identities = 12/77 (15%), Positives = 26/77 (33%), Gaps = 10/77 (12%)
Query: 38 IRKNTFKNLLNLQTLYCNFNPKLTFI-HPYSFNNDWSLKEFYINNNAITS--------LP 88
I N ++ L N KL +I + + + + + N I S L
Sbjct: 368 IPANFCGFTEQVENLSFAHN-KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD 426
Query: 89 HELGDWDSLEVLDIQSN 105
++ +++ +N
Sbjct: 427 PTPFKGINVSSINLSNN 443
Score = 35.4 bits (82), Expect = 0.009
Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 7/67 (10%)
Query: 45 NLLNLQTLYCNFNP-----KLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEV 99
N L+ + P SL + I +N I + ++ ++ V
Sbjct: 534 NSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT--PNISV 591
Query: 100 LDIQSNP 106
LDI+ NP
Sbjct: 592 LDIKDNP 598
Score = 35.4 bits (82), Expect = 0.010
Identities = 10/71 (14%), Positives = 29/71 (40%), Gaps = 9/71 (12%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFN-------NDWSLKEFYINNNAITSLPHE-LGDW 94
K++ + + ++N ++ + +F+ ++ ++NN I+ P E
Sbjct: 398 AKSVSVMSAIDFSYN-EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTG 456
Query: 95 DSLEVLDIQSN 105
L +++ N
Sbjct: 457 SPLSSINLMGN 467
Score = 35.0 bits (81), Expect = 0.013
Identities = 17/70 (24%), Positives = 24/70 (34%), Gaps = 9/70 (12%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYI-------NNNAITSLPHELGDWD 95
L L + ++N + P N +LK F I N + P +
Sbjct: 509 ATTLPYLVGIDLSYN-SFSKF-PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCP 566
Query: 96 SLEVLDIQSN 105
SL L I SN
Sbjct: 567 SLTQLQIGSN 576
Score = 34.6 bits (80), Expect = 0.016
Identities = 12/74 (16%), Positives = 21/74 (28%), Gaps = 9/74 (12%)
Query: 41 NTFKNLLNLQTLYCNFN-------PKLTFIHPYSFNNDWSLKEFYINNNAITSL--PHEL 91
K L +Q + N K + ++ YI N + + L
Sbjct: 267 TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL 326
Query: 92 GDWDSLEVLDIQSN 105
L +L+ N
Sbjct: 327 QKMKKLGMLECLYN 340
Score = 31.9 bits (73), Expect = 0.14
Identities = 11/74 (14%), Positives = 24/74 (32%), Gaps = 10/74 (13%)
Query: 41 NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPH---------EL 91
+ NL +L + P LT + P ++ + N S +
Sbjct: 243 LKWDNLKDLTDVEVYNCPNLTKL-PTFLKALPEMQLINVACNRGISGEQLKDDWQALADA 301
Query: 92 GDWDSLEVLDIQSN 105
+ ++++ I N
Sbjct: 302 PVGEKIQIIYIGYN 315
Score = 27.3 bits (61), Expect = 4.7
Identities = 8/79 (10%), Positives = 21/79 (26%), Gaps = 7/79 (8%)
Query: 41 NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGDWDSLEV 99
+L L N + ++ N + I +N S+ + + +
Sbjct: 560 EGITLCPSLTQLQIGSN-DIRKVNEKITPN---ISVLDIKDNPNISIDLSYVCPYIEAGM 615
Query: 100 LDIQSNPWT--CDCSIQWL 116
+ + C +
Sbjct: 616 YMLFYDKTQDIRGCDALDI 634
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 39.2 bits (92), Expect = 3e-04
Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 3/64 (4%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDI 102
L + ++ ++N +T I P LK I + + + D+ L L
Sbjct: 132 INTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDYRG-IEDFPKLNQLYA 188
Query: 103 QSNP 106
S
Sbjct: 189 FSQT 192
Score = 33.8 bits (78), Expect = 0.019
Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 2/65 (3%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGDWDSLEVLD 101
L NL+ L +T + + SL I+++A + + +D
Sbjct: 84 ISGLSNLERLRIMGK-DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSID 142
Query: 102 IQSNP 106
+ N
Sbjct: 143 LSYNG 147
Score = 32.2 bits (74), Expect = 0.068
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSL-PHELGDWDSLEVLD 101
+ N++ L N T +P S + +L+ I +TS L SL +LD
Sbjct: 62 IEYAHNIKDLTINNI-HATNYNPISGLS--NLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118
Query: 102 IQSN 105
I +
Sbjct: 119 ISHS 122
Score = 29.9 bits (68), Expect = 0.35
Identities = 8/45 (17%), Positives = 14/45 (31%), Gaps = 3/45 (6%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSL 87
K L L++L F+ + L + Y + I
Sbjct: 155 LKTLPELKSLNIQFD-GVHDYRGIEDFP--KLNQLYAFSQTIGGK 196
Score = 28.4 bits (64), Expect = 1.1
Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 8/66 (12%)
Query: 42 TFKNLLNLQTLYCNFNP--KLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEV 99
T + +L + LT I +N +K+ INN T+ + +LE
Sbjct: 39 TEAQMNSLTYITLANINVTDLTGIE--YAHN---IKDLTINNIHATNYNP-ISGLSNLER 92
Query: 100 LDIQSN 105
L I
Sbjct: 93 LRIMGK 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 39.7 bits (93), Expect = 3e-04
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDI 102
L L TL N +++ I P + L+ Y++ N I+ L L +L+VL++
Sbjct: 152 LSRLTKLDTLSLEDN-QISDIVPLAGLT--KLQNLYLSKNHISDLR-ALAGLKNLDVLEL 207
Query: 103 QSNPWT 108
S
Sbjct: 208 FSQECL 213
Score = 33.5 bits (77), Expect = 0.030
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDI 102
NL NL L+ + N K+ + + LK + +N I+ + L LE L +
Sbjct: 86 LANLKNLGWLFLDEN-KVKDLSS--LKDLKKLKSLSLEHNGISDING-LVHLPQLESLYL 141
Query: 103 QSN 105
+N
Sbjct: 142 GNN 144
Score = 33.5 bits (77), Expect = 0.039
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDI 102
+ L N+ L+ N N KLT I P N +L +++ N + L L D L+ L +
Sbjct: 64 IQYLPNVTKLFLNGN-KLTDIKP--LANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSL 119
Query: 103 QSN 105
+ N
Sbjct: 120 EHN 122
Score = 33.1 bits (76), Expect = 0.043
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDI 102
K+L L++L N ++ I+ + L+ Y+ NN IT + L L+ L +
Sbjct: 108 LKDLKKLKSLSLEHN-GISDING--LVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSL 163
Query: 103 QSN 105
+ N
Sbjct: 164 EDN 166
Score = 30.4 bits (69), Expect = 0.34
Identities = 9/62 (14%), Positives = 18/62 (29%), Gaps = 4/62 (6%)
Query: 44 KNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQ 103
+T N S+ + NN+ I S+ + ++ L +
Sbjct: 21 DAFAETIKDNLKKK-SVTDAVT--QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLN 76
Query: 104 SN 105
N
Sbjct: 77 GN 78
Score = 28.9 bits (65), Expect = 1.2
Identities = 10/64 (15%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 42 TFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLD 101
T L ++ + N + + + + ++ + ++N N +T + L + +L L
Sbjct: 41 TQNELNSIDQIIANNS-DIKSVQGIQYLP--NVTKLFLNGNKLTDIK-PLANLKNLGWLF 96
Query: 102 IQSN 105
+ N
Sbjct: 97 LDEN 100
Score = 27.3 bits (61), Expect = 4.0
Identities = 8/46 (17%), Positives = 16/46 (34%), Gaps = 3/46 (6%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLP 88
L LQ LY + N ++ + +L + + + P
Sbjct: 174 LAGLTKLQNLYLSKN-HISDLRA--LAGLKNLDVLELFSQECLNKP 216
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 39.7 bits (92), Expect = 4e-04
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDI 102
L L TL N +++ I P + L+ Y++ N I+ L L +L+VL++
Sbjct: 149 LSRLTKLDTLSLEDN-QISDIVPLAGLT--KLQNLYLSKNHISDLR-ALAGLKNLDVLEL 204
Query: 103 QSNPWTCDC 111
S
Sbjct: 205 FSQECLNKP 213
Score = 35.9 bits (82), Expect = 0.007
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDI 102
K+L L++L N ++ I+ + L+ Y+ NN IT + L L+ L +
Sbjct: 105 LKDLKKLKSLSLEHN-GISDING--LVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSL 160
Query: 103 QSN 105
+ N
Sbjct: 161 EDN 163
Score = 35.5 bits (81), Expect = 0.011
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDI 102
NL NL L+ + N K+ + + LK + +N I+ + L LE L +
Sbjct: 83 LTNLKNLGWLFLDEN-KIKDLSS--LKDLKKLKSLSLEHNGISDING-LVHLPQLESLYL 138
Query: 103 QSN 105
+N
Sbjct: 139 GNN 141
Score = 34.7 bits (79), Expect = 0.015
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDI 102
+ L N+ L+ N N KLT I P N +L +++ N I L L D L+ L +
Sbjct: 61 IQYLPNVTKLFLNGN-KLTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSL 116
Query: 103 QSN 105
+ N
Sbjct: 117 EHN 119
Score = 30.5 bits (68), Expect = 0.44
Identities = 9/63 (14%), Positives = 18/63 (28%), Gaps = 4/63 (6%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDI 102
+T N S+ + NN+ I S+ + ++ L +
Sbjct: 17 DDAFAETIKDNLKKK-SVTDAVT--QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFL 72
Query: 103 QSN 105
N
Sbjct: 73 NGN 75
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 39.6 bits (93), Expect = 5e-04
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDI 102
NL NL L FN ++ I P S L+ + NN ++ + L + ++ L
Sbjct: 305 ISNLKNLTYLTLYFN-NISDISPVSSLT--KLQRLFFYNNKVSDVS-SLANLTNINWLSA 360
Query: 103 QSNPWT 108
N +
Sbjct: 361 GHNQIS 366
Score = 38.8 bits (91), Expect = 7e-04
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDI 102
L NL L N N +L I + +L + + NN I++L L L L +
Sbjct: 217 LGILTNLDELSLNGN-QLKDIGT--LASLTNLTDLDLANNQISNLA-PLSGLTKLTELKL 272
Query: 103 QSN 105
+N
Sbjct: 273 GAN 275
Score = 38.8 bits (91), Expect = 7e-04
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 41 NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVL 100
T +L NL L N +++ + P S L E + N I+++ L +L L
Sbjct: 237 GTLASLTNLTDLDLANN-QISNLAPLSGLT--KLTELKLGANQISNIS-PLAGLTALTNL 292
Query: 101 DIQSNP 106
++ N
Sbjct: 293 ELNENQ 298
Score = 38.4 bits (90), Expect = 0.001
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 4/63 (6%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDI 102
L L L N +++ I P +L +N N + + + + +L L +
Sbjct: 261 LSGLTKLTELKLGAN-QISNISP--LAGLTALTNLELNENQLEDIS-PISNLKNLTYLTL 316
Query: 103 QSN 105
N
Sbjct: 317 YFN 319
Score = 37.6 bits (88), Expect = 0.002
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 41 NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVL 100
+ L NL++L N +++ I P +L E +N N + + L +L L
Sbjct: 193 SVLAKLTNLESLIATNN-QISDITPLGILT--NLDELSLNGNQLKDIG-TLASLTNLTDL 248
Query: 101 DIQSN 105
D+ +N
Sbjct: 249 DLANN 253
Score = 35.7 bits (83), Expect = 0.008
Identities = 14/66 (21%), Positives = 18/66 (27%), Gaps = 2/66 (3%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDI 102
NL + L N T N S+ N P + D S DI
Sbjct: 371 LANLTRITQLGLNDQ-AWTNAPVNYKAN-VSIPNTVKNVTGALIAPATISDGGSYTEPDI 428
Query: 103 QSNPWT 108
N +
Sbjct: 429 TWNLPS 434
Score = 34.9 bits (81), Expect = 0.012
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDI 102
KNL L + N N ++ I P N +L + NN IT + L + +L L++
Sbjct: 86 LKNLTKLVDILMNNN-QIADITP--LANLTNLTGLTLFNNQITDID-PLKNLTNLNRLEL 141
Query: 103 QSN 105
SN
Sbjct: 142 SSN 144
Score = 34.2 bits (79), Expect = 0.025
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 41 NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVL 100
+ KNL NL L + N ++ I + SL++ N P L + +LE L
Sbjct: 128 DPLKNLTNLNRLELSSN-TISDISA--LSGLTSLQQLSFGNQVTDLKP--LANLTTLERL 182
Query: 101 DIQSN 105
DI SN
Sbjct: 183 DISSN 187
Score = 33.8 bits (78), Expect = 0.036
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDI 102
NL NL L N ++T I P N +L +++N I+ + L SL+ L
Sbjct: 108 LANLTNLTGLTLFNN-QITDIDP--LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSF 163
Query: 103 QSN 105
+
Sbjct: 164 GNQ 166
Score = 33.4 bits (77), Expect = 0.048
Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Query: 42 TFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLD 101
+ +L + TL + + I +L + +NN +T + L + L +
Sbjct: 41 SQTDLDQVTTLQADRL-GIKSIDG--VEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDIL 96
Query: 102 IQSN 105
+ +N
Sbjct: 97 MNNN 100
Score = 33.0 bits (76), Expect = 0.057
Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Query: 41 NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVL 100
++ NL N+ L N +++ + P + + + +N+ A T+ P S+
Sbjct: 347 SSLANLTNINWLSAGHN-QISDLTPLANLT--RITQLGLNDQAWTNAPVNYKANVSIPNT 403
Query: 101 DIQSN 105
Sbjct: 404 VKNVT 408
Score = 32.2 bits (74), Expect = 0.11
Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 5/63 (7%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDI 102
L +LQ L N +L+ I++N ++ + L +LE L
Sbjct: 152 LSGLTSLQQLSFGNQ----VTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIA 206
Query: 103 QSN 105
+N
Sbjct: 207 TNN 209
Score = 31.5 bits (72), Expect = 0.19
Identities = 7/64 (10%), Positives = 17/64 (26%), Gaps = 4/64 (6%)
Query: 42 TFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLD 101
T L S + + + I S+ + ++L ++
Sbjct: 19 TDTALAEKMKTVLGKT---NVTDTVSQTDLDQVTTLQADRLGIKSID-GVEYLNNLTQIN 74
Query: 102 IQSN 105
+N
Sbjct: 75 FSNN 78
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 39.2 bits (92), Expect = 5e-04
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 6/62 (9%)
Query: 44 KNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQ 103
+L+ + N +L + N L Y +NN++ LP SLE +
Sbjct: 170 DLPPSLEFIAAGNN-QLEELPE--LQNLPFLTAIYADNNSLKKLPDLPL---SLESIVAG 223
Query: 104 SN 105
+N
Sbjct: 224 NN 225
Score = 37.7 bits (88), Expect = 0.002
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDI 102
+NL L +Y + N L + + L+ NN + LP EL + L +
Sbjct: 191 LQNLPFLTAIYADNN-SLKKLPDLPLS----LESIVAGNNILEELP-ELQNLPFLTTIYA 244
Query: 103 QSN 105
+N
Sbjct: 245 DNN 247
Score = 37.3 bits (87), Expect = 0.002
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDI 102
L+L+++ N L + N L Y +NN + +LP ++L V D
Sbjct: 211 PDLPLSLESIVAGNN-ILEELP--ELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDN 267
Query: 103 QSN 105
Sbjct: 268 YLT 270
Score = 35.0 bits (81), Expect = 0.013
Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 41 NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVL 100
+NL L T+Y + N L + P + L+ + +N +T LP L+V
Sbjct: 231 PELQNLPFLTTIYADNN-LLKTL-PDLPPS---LEALNVRDNYLTDLPELPQSLTFLDVS 285
Query: 101 DIQSN 105
+ +
Sbjct: 286 ENIFS 290
Score = 34.6 bits (80), Expect = 0.017
Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 7/69 (10%)
Query: 38 IRKNTFKNLL-NLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDS 96
+L L+ L + N +L + N LK ++NN++ LP S
Sbjct: 121 NNLKALSDLPPLLEYLGVSNN-QLEKLP--ELQNSSFLKIIDVDNNSLKKLPDLPP---S 174
Query: 97 LEVLDIQSN 105
LE + +N
Sbjct: 175 LEFIAAGNN 183
Score = 34.2 bits (79), Expect = 0.024
Identities = 15/91 (16%), Positives = 28/91 (30%), Gaps = 5/91 (5%)
Query: 15 YDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSL 74
Y ++ + P A+ + L N L+ + P + L
Sbjct: 39 YYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-GLSSL-PELPPH---L 93
Query: 75 KEFYINNNAITSLPHELGDWDSLEVLDIQSN 105
+ + N++T LP SL V +
Sbjct: 94 ESLVASCNSLTELPELPQSLKSLLVDNNNLK 124
Score = 33.0 bits (76), Expect = 0.050
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDI 102
++L +L N L+ + P L+ ++NN + LP EL + L+++D+
Sbjct: 110 PQSLKSLLVDNNNLK-ALSDLPP-------LLEYLGVSNNQLEKLP-ELQNSSFLKIIDV 160
Query: 103 QSNPWT 108
+N
Sbjct: 161 DNNSLK 166
Score = 33.0 bits (76), Expect = 0.050
Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 62 FIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWT 108
FI+P + +N L+E +++ +T +P E + S + W
Sbjct: 2 FINPRNVSNT-FLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWE 47
Score = 31.5 bits (72), Expect = 0.17
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 5/56 (8%)
Query: 44 KNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEV 99
L+ L +FN L + P N LK+ ++ N + P + L +
Sbjct: 334 ALPPRLERLIASFN-HLAEV-PELPQN---LKQLHVEYNPLREFPDIPESVEDLRM 384
Score = 31.5 bits (72), Expect = 0.18
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 8/58 (13%)
Query: 48 NLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSN 105
NL L + N ++ + + L+E ++NN + LP LE L N
Sbjct: 298 NLYYLNASSN-EIRSL-CDLPPS---LEELNVSNNKLIELPALPP---RLERLIASFN 347
Score = 29.2 bits (66), Expect = 1.0
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 73 SLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWT 108
+LK+ ++ N + P S+E L + S
Sbjct: 397 NLKQLHVETNPLREFPDIPE---SVEDLRMNSERVV 429
Score = 28.8 bits (65), Expect = 1.2
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 8/62 (12%)
Query: 44 KNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQ 103
+ +L++L + N LT + P + SL N A++ LP LE L +
Sbjct: 88 ELPPHLESLVASCN-SLTEL-PELPQSLKSLLVDNNNLKALSDLPP------LLEYLGVS 139
Query: 104 SN 105
+N
Sbjct: 140 NN 141
Score = 26.1 bits (58), Expect = 9.2
Identities = 3/42 (7%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 44 KNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAIT 85
+++ L N ++ + ++ L++ ++
Sbjct: 413 DIPESVEDLRMNSE-RVVDPYEFAHETTDKLEDDVFEHHHHH 453
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 39.0 bits (90), Expect = 7e-04
Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 5/68 (7%)
Query: 41 NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPH--ELGDWDSLE 98
L L+ L + N L + + L+E + NN + L L
Sbjct: 480 PALAALRCLEVLQASDN-ALENVDGVANLP--RLQELLLCNNRLQQSAAIQPLVSCPRLV 536
Query: 99 VLDIQSNP 106
+L++Q N
Sbjct: 537 LLNLQGNS 544
Score = 32.8 bits (74), Expect = 0.070
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 73 SLKEFYINNNAITSLPHELGDWDSLEVLDIQSN 105
+ +++N + +LP L LEVL N
Sbjct: 464 LVTHLDLSHNRLRALPPALAALRCLEVLQASDN 496
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 37.3 bits (87), Expect = 0.002
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDI 102
+L NL+ L N KL I F + L+ ++ N IT+ L + +D+
Sbjct: 124 LIHLKNLEILSIRNN-KLKSIVMLGFLS--KLEVLDLHGNEITNTG-GLTRLKKVNWIDL 179
Query: 103 QSNP 106
Sbjct: 180 TGQK 183
Score = 35.8 bits (83), Expect = 0.005
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDI 102
K+L L+ L N N +L ++ L +++NN + L +LE+L I
Sbjct: 81 LKDLTKLEELSVNRN-RLKNLNGIPSAC---LSRLFLDNNELRDTDS-LIHLKNLEILSI 135
Query: 103 QSN 105
++N
Sbjct: 136 RNN 138
Score = 34.2 bits (79), Expect = 0.017
Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 4/69 (5%)
Query: 38 IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSL 97
++ L L+ + N +L + +L+ I NN + S+ LG L
Sbjct: 97 LKNLNGIPSACLSRLFLDNN-ELRDTDS--LIHLKNLEILSIRNNKLKSIV-MLGFLSKL 152
Query: 98 EVLDIQSNP 106
EVLD+ N
Sbjct: 153 EVLDLHGNE 161
Score = 33.1 bits (76), Expect = 0.050
Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 42 TFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLD 101
+ K L +Q + + + + +LKE ++++N I+ L L D LE L
Sbjct: 36 SQKELSGVQNFNGDNS-NIQSLAG--MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELS 91
Query: 102 IQSN 105
+ N
Sbjct: 92 VNRN 95
Score = 27.7 bits (62), Expect = 2.8
Identities = 6/48 (12%), Positives = 15/48 (31%), Gaps = 3/48 (6%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE 90
L L+ L + N ++T + + + + P +
Sbjct: 146 LGFLSKLEVLDLHGN-EITNTGGLTRLK--KVNWIDLTGQKCVNEPVK 190
Score = 27.7 bits (62), Expect = 2.9
Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 4/62 (6%)
Query: 44 KNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQ 103
L N +T + ++ F +N+ I SL + + +L+ L +
Sbjct: 16 PGLANAVKQNLGKQ-SVTDLVS--QKELSGVQNFNGDNSNIQSLAG-MQFFTNLKELHLS 71
Query: 104 SN 105
N
Sbjct: 72 HN 73
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 37.4 bits (87), Expect = 0.002
Identities = 10/66 (15%), Positives = 17/66 (25%), Gaps = 5/66 (7%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDI 102
+ L K+ + ++ L IT L L L L +
Sbjct: 271 LTHNTQLIYFQAEGCRKIKEL---DVTHNTQLYLLDCQAAGITELD--LSQNPKLVYLYL 325
Query: 103 QSNPWT 108
+ T
Sbjct: 326 NNTELT 331
Score = 37.0 bits (86), Expect = 0.003
Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 6/71 (8%)
Query: 38 IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSL 97
I K L TL C+FN K+T + + + L + N IT L L L
Sbjct: 161 ITKLDVTPQTQLTTLDCSFN-KITEL---DVSQNKLLNRLNCDTNNITKLD--LNQNIQL 214
Query: 98 EVLDIQSNPWT 108
LD SN T
Sbjct: 215 TFLDCSSNKLT 225
Score = 36.6 bits (85), Expect = 0.004
Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 6/71 (8%)
Query: 38 IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSL 97
I++ + L L C +T + + + L Y+NN +T L + L
Sbjct: 288 IKELDVTHNTQLYLLDCQAA-GITEL---DLSQNPKLVYLYLNNTELTELD--VSHNTKL 341
Query: 98 EVLDIQSNPWT 108
+ L +
Sbjct: 342 KSLSCVNAHIQ 352
Score = 36.2 bits (84), Expect = 0.006
Identities = 12/63 (19%), Positives = 16/63 (25%), Gaps = 5/63 (7%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDI 102
L LY N +LT + LK N I +G +L
Sbjct: 314 LSQNPKLVYLYLNNT-ELTELDVSHNTK---LKSLSCVNAHIQDFS-SVGKIPALNNNFE 368
Query: 103 QSN 105
Sbjct: 369 AEG 371
Score = 35.0 bits (81), Expect = 0.014
Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 5/68 (7%)
Query: 38 IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSL 97
+ + + L L C+ N K+T + L + N IT L + L
Sbjct: 139 LTEIDVSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNKITELD--VSQNKLL 193
Query: 98 EVLDIQSN 105
L+ +N
Sbjct: 194 NRLNCDTN 201
Score = 34.3 bits (79), Expect = 0.022
Identities = 15/64 (23%), Positives = 20/64 (31%), Gaps = 6/64 (9%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDI 102
+ L L C+ N KLT I L F + N +T L + L L
Sbjct: 208 LNQNIQLTFLDCSSN-KLTEI---DVTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHC 261
Query: 103 QSNP 106
Sbjct: 262 IQTD 265
Score = 33.9 bits (78), Expect = 0.026
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 6/63 (9%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDI 102
+ L L L C N +T + N L ++N +T+L + L L+
Sbjct: 60 IEKLTGLTKLICTSN-NITTLDLSQNTN---LTYLACDSNKLTNLD--VTPLTKLTYLNC 113
Query: 103 QSN 105
+N
Sbjct: 114 DTN 116
Score = 33.5 bits (77), Expect = 0.034
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 5/64 (7%)
Query: 42 TFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLD 101
+ + L L +L C+ + +T + L + +N IT+L L +L L
Sbjct: 37 SEEQLATLTSLDCHNS-SITDMTGIEKLT--GLTKLICTSNNITTLD--LSQNTNLTYLA 91
Query: 102 IQSN 105
SN
Sbjct: 92 CDSN 95
Score = 33.1 bits (76), Expect = 0.059
Identities = 16/66 (24%), Positives = 22/66 (33%), Gaps = 6/66 (9%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDI 102
NL L C+ N KLT + L + N +T L + L L+
Sbjct: 81 LSQNTNLTYLACDSN-KLTNLDVTPLTK---LTYLNCDTNKLTKLD--VSQNPLLTYLNC 134
Query: 103 QSNPWT 108
N T
Sbjct: 135 ARNTLT 140
Score = 31.6 bits (72), Expect = 0.15
Identities = 9/64 (14%), Positives = 17/64 (26%), Gaps = 6/64 (9%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDI 102
L L C+ N LT + + + L + + + L L
Sbjct: 229 VTPLTQLTYFDCSVN-PLTELDVSTLSK---LTTLHCIQTDLLEID--LTHNTQLIYFQA 282
Query: 103 QSNP 106
+
Sbjct: 283 EGCR 286
Score = 30.8 bits (70), Expect = 0.28
Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 5/68 (7%)
Query: 38 IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSL 97
+ K L L C N LT I +++ L E + N + ++ L
Sbjct: 118 LTKLDVSQNPLLTYLNCARN-TLTEI---DVSHNTQLTELDCHLNKKITKL-DVTPQTQL 172
Query: 98 EVLDIQSN 105
LD N
Sbjct: 173 TTLDCSFN 180
Score = 27.7 bits (62), Expect = 3.1
Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 9/70 (12%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSL----- 97
+ L++L C + +L + ++P E +SL
Sbjct: 335 VSHNTKLKSLSCVNA-HIQDFSSVGKIP--ALNNNFEAEGQTITMPKETLTNNSLTIAVS 391
Query: 98 -EVLDIQSNP 106
++LD NP
Sbjct: 392 PDLLDQFGNP 401
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 37.0 bits (86), Expect = 0.002
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDI 102
NL L TL + N K++ I P + +L E ++ NN I+ + L + +L ++ +
Sbjct: 169 LANLSKLTTLKADDN-KISDISP--LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTL 224
Query: 103 QSNPWT 108
+ T
Sbjct: 225 TNQTIT 230
Score = 35.4 bits (82), Expect = 0.009
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDI 102
KNL + L + N L + S+K + + IT + L +L+VL +
Sbjct: 81 LKNLTKITELELSGN-PLKNVSA--IAGLQSIKTLDLTSTQITDVT-PLAGLSNLQVLYL 136
Query: 103 QSN 105
N
Sbjct: 137 DLN 139
Score = 34.7 bits (80), Expect = 0.013
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDI 102
L NLQ LY + N ++T I P +L+ I N ++ L L + L L
Sbjct: 125 LAGLSNLQVLYLDLN-QITNISP--LAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKA 180
Query: 103 QSN 105
N
Sbjct: 181 DDN 183
Score = 32.7 bits (75), Expect = 0.054
Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDI 102
+ L NL L N ++T + P N + E ++ N + ++ + S++ LD+
Sbjct: 59 VQYLNNLIGLELKDN-QITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDL 114
Query: 103 QSN 105
S
Sbjct: 115 TST 117
Score = 32.7 bits (75), Expect = 0.069
Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 4/67 (5%)
Query: 42 TFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLD 101
T +L + TL +T I +L + +N IT L L + + L+
Sbjct: 36 TQADLDGITTLSAFGT-GVTTIEG--VQYLNNLIGLELKDNQITDLA-PLKNLTKITELE 91
Query: 102 IQSNPWT 108
+ NP
Sbjct: 92 LSGNPLK 98
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 36.8 bits (85), Expect = 0.003
Identities = 13/73 (17%), Positives = 22/73 (30%), Gaps = 2/73 (2%)
Query: 33 SELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELG 92
+ + LQ L + N S + L ++ + +P L
Sbjct: 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP 273
Query: 93 DWDSLEVLDIQSN 105
L VLD+ N
Sbjct: 274 --AKLSVLDLSYN 284
Score = 32.6 bits (74), Expect = 0.064
Identities = 12/81 (14%), Positives = 26/81 (32%), Gaps = 1/81 (1%)
Query: 38 IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDW-DS 96
+ + T +L L ++ + ++ LK I + E +
Sbjct: 115 LLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA 174
Query: 97 LEVLDIQSNPWTCDCSIQWLI 117
L LD+ NP + + +
Sbjct: 175 LSTLDLSDNPELGERGLISAL 195
Score = 32.2 bits (73), Expect = 0.094
Identities = 14/82 (17%), Positives = 25/82 (30%), Gaps = 7/82 (8%)
Query: 31 ANSELYAIRKNTFKNLLNLQTLYCNFNPKLT---FIHPYSFNNDWSLKEFYINNNAITSL 87
A + + L TL + NP+L I +L+ + N + +
Sbjct: 157 AQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP 216
Query: 88 PHE----LGDWDSLEVLDIQSN 105
L+ LD+ N
Sbjct: 217 SGVCSALAAARVQLQGLDLSHN 238
Score = 26.4 bits (58), Expect = 7.9
Identities = 10/67 (14%), Positives = 21/67 (31%), Gaps = 5/67 (7%)
Query: 42 TFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLD 101
+ L +L +F L + L ++ N + P + L
Sbjct: 248 SCDWPSQLNSLNLSFT-GLKQVPKGLP---AKLSVLDLSYNRLDRNPSPDE-LPQVGNLS 302
Query: 102 IQSNPWT 108
++ NP+
Sbjct: 303 LKGNPFL 309
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.4 bits (83), Expect = 0.006
Identities = 32/163 (19%), Positives = 51/163 (31%), Gaps = 41/163 (25%)
Query: 46 LLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYIN-NNAITSLPHELGDWDSLEVLDIQS 104
L LQ L +P T +S N + + S P+E + L VL
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE----NCLLVLLNVQ 254
Query: 105 NPWTCD-----CSI------QWLIDYVAKRQRTDPELNYN----------------LHCS 137
N + C I + + D+++ T L+++ L C
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314
Query: 138 QPVKFSNVHLLSNPL-LSHISGECVKGALVISQLST-QFYKLY 178
P L +NP LS I + L+T +K
Sbjct: 315 -PQDLPREVLTTNPRRLSII------AESIRDGLATWDNWKHV 350
Score = 30.6 bits (68), Expect = 0.39
Identities = 19/166 (11%), Positives = 57/166 (34%), Gaps = 39/166 (23%)
Query: 14 SYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFN---- 69
++ +I + L YA+ + + + N+ + + + ++ Y ++
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHR-SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479
Query: 70 ---------NDWSLKEFYIN--------NNAITSLPHELGDWDSLEVLD-----IQSNPW 107
+ +++ + T+ ++L+ L I N
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP 539
Query: 108 TCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSN-VHL-LSNP 151
+ + ++D++ P++ NL CS K+++ + + L
Sbjct: 540 KYERLVNAILDFL-------PKIEENLICS---KYTDLLRIALMAE 575
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 35.7 bits (83), Expect = 0.008
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 45 NLLNLQTLYCNFNPKLT-FIHPYSFNNDWSLKEFYINNNAIT-SLPHELGDWDSLEVLDI 102
L +LQ L N K T I + +L ++ N ++P G LE L +
Sbjct: 267 PLKSLQYLSLAEN-KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL 325
Query: 103 QSN 105
SN
Sbjct: 326 SSN 328
Score = 34.9 bits (81), Expect = 0.015
Identities = 13/66 (19%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 41 NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAIT-SLPHELGDWDSLEV 99
++ +L L+ L N L P +L+ ++ N +T +P L + +L
Sbjct: 436 SSLGSLSKLRDLKLWLN-MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW 494
Query: 100 LDIQSN 105
+ + +N
Sbjct: 495 ISLSNN 500
Score = 34.9 bits (81), Expect = 0.016
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 45 NLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAIT-SLPHELGDWDSLEVLDIQ 103
LQ LY N T P + +N L +++ N ++ ++P LG L L +
Sbjct: 392 PKNTLQELYLQNN-GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 450
Query: 104 SN 105
N
Sbjct: 451 LN 452
Score = 33.7 bits (78), Expect = 0.032
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 41 NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAIT-SLPHELGDWDSLEV 99
+ N NL + + N +LT P +L ++NN+ + ++P ELGD SL
Sbjct: 484 SGLSNCTNLNWISLSNN-RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 542
Query: 100 LDIQSN 105
LD+ +N
Sbjct: 543 LDLNTN 548
Score = 32.6 bits (75), Expect = 0.084
Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAIT-SLPHE-LGDWDSLEVL 100
L L + N P F + L+ +++N + LP + L L+VL
Sbjct: 290 SGACDTLTGLDLSGN-HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVL 348
Query: 101 DIQSN 105
D+ N
Sbjct: 349 DLSFN 353
Score = 31.8 bits (73), Expect = 0.14
Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 45 NLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAIT-SLPHELGDWDSLEVLDIQ 103
+NL+ L + N + P + +L+ I+ N ++ + L++L+I
Sbjct: 198 RCVNLEFLDVSSN-NFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS 255
Query: 104 SN 105
SN
Sbjct: 256 SN 257
Score = 30.3 bits (69), Expect = 0.44
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 5/64 (7%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAIT-SLPHELGDWDSLEVLD 101
L+ L + N + +L+ +++N + +P LGD +L+ LD
Sbjct: 174 SDGCGELKHLAISGN---KISGDVDVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLD 229
Query: 102 IQSN 105
I N
Sbjct: 230 ISGN 233
Score = 28.3 bits (64), Expect = 2.2
Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 2/82 (2%)
Query: 25 QLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAI 84
+ + E IR L +F+N+ S+ ++ N +
Sbjct: 586 ECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR-VYGGHTSPTFDNNGSMMFLDMSYNML 644
Query: 85 T-SLPHELGDWDSLEVLDIQSN 105
+ +P E+G L +L++ N
Sbjct: 645 SGYIPKEIGSMPYLFILNLGHN 666
Score = 26.4 bits (59), Expect = 7.5
Identities = 8/53 (15%), Positives = 15/53 (28%), Gaps = 3/53 (5%)
Query: 59 KLTFIHPYSFNNDWSLKEFYINNNAIT---SLPHELGDWDSLEVLDIQSNPWT 108
+ ND KE + N + +L + +I S +
Sbjct: 569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 621
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 34.4 bits (80), Expect = 0.019
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Query: 45 NLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAIT-SLPHELGDWDSLEVLDIQ 103
L L LY ++ P + +L + NA++ +LP + +L +
Sbjct: 99 KLTQLHYLYITHT-NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157
Query: 104 SN 105
N
Sbjct: 158 GN 159
Score = 32.1 bits (74), Expect = 0.10
Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
Query: 42 TFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAIT-SLPHELGDWDSLEVL 100
F + N Q ++ N L F +L + NN I +LP L L L
Sbjct: 216 LFGSDKNTQKIHLAKN-SLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273
Query: 101 DIQSN 105
++ N
Sbjct: 274 NVSFN 278
Score = 26.3 bits (59), Expect = 8.1
Identities = 7/42 (16%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 65 PYSFNNDWSLKEFYINNNAIT-SLPHELGDWDSLEVLDIQSN 105
P +F N +L ++ N + G + + + + N
Sbjct: 191 PPTFAN-LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 32.0 bits (73), Expect = 0.076
Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 4/66 (6%)
Query: 41 NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDW-DSLEV 99
+NL+ L L + LK+ ++ N I L + +L
Sbjct: 43 GLTAEFVNLEFLSLINV-GLISVSN--LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99
Query: 100 LDIQSN 105
L++ N
Sbjct: 100 LNLSGN 105
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 31.2 bits (71), Expect = 0.14
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 41 NTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPH--ELGDWDSLE 98
N L+ L+ ++N ++ + +L+ Y++NN IT+ +L D LE
Sbjct: 87 NLDAVADTLEELWISYN-QIASLSG--IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLE 143
Query: 99 VLDIQSNP 106
L + NP
Sbjct: 144 DLLLAGNP 151
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 30.0 bits (68), Expect = 0.26
Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 4/67 (5%)
Query: 40 KNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDW-DSLE 98
+ L+ L LT I + LK+ +++N ++ L + +L
Sbjct: 35 EGLTDEFEELEFLSTINV-GLTSIA--NLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91
Query: 99 VLDIQSN 105
L++ N
Sbjct: 92 HLNLSGN 98
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 29.2 bits (66), Expect = 0.63
Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 4/63 (6%)
Query: 44 KNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDW-DSLEVLDI 102
L + + N ++ + + LK +NNN I + L L L +
Sbjct: 39 ATLDQFDAIDFSDN-EIRKLDGFPLLR--RLKTLLVNNNRICRIGEGLDQALPDLTELIL 95
Query: 103 QSN 105
+N
Sbjct: 96 TNN 98
>3pow_A Calreticulin; legume lectin fold, CNX/CRT family, multi-functional,
carboh binding, peptide binding, multi-compartmental,
chaperone; 1.55A {Homo sapiens} PDB: 3pos_A 3o0w_A*
3o0v_A* 3o0x_A*
Length = 265
Score = 28.5 bits (63), Expect = 1.3
Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 3/91 (3%)
Query: 12 DISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNND 71
D+ D++Y IM +++ I KN+L + + C + + T ++ D
Sbjct: 112 DMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGKNVLINKDIRCKDD-EFTHLYTLIVRPD 170
Query: 72 WSLKEFYINNNAITSLPHELGDWDSLEVLDI 102
+ E I+N+ + S DWD L
Sbjct: 171 NTY-EVKIDNSQVES-GSLEDDWDFLPGSGD 199
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein,
BIG3 domain, LRR domain, STRU genomics; 2.05A
{Bacteroides ovatus} PDB: 4fd0_A
Length = 401
Score = 28.1 bits (63), Expect = 2.0
Identities = 9/61 (14%), Positives = 17/61 (27%), Gaps = 3/61 (4%)
Query: 23 KVQLPYSTANSELYA-IRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINN 81
+V ST N + A I + L + + + + + I
Sbjct: 275 EVTTYGSTFNDDPEAMIHPYCLEGCPKLARF--EIPESIRILGQGLLGGNRKVTQLTIPA 332
Query: 82 N 82
N
Sbjct: 333 N 333
Score = 26.2 bits (58), Expect = 8.1
Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL 91
N L +I F N +Q + F L + F ++LK+ ++ IT LP
Sbjct: 143 NEGLKSIGDMAFFNS-TVQEI--VFPSTLEQLKEDIFYYCYNLKKADLSKTKITKLPAST 199
Query: 92 GDWDSLEVLDIQSN 105
+ +E + +
Sbjct: 200 FVYAGIEEVLLPVT 213
Score = 26.2 bits (58), Expect = 9.9
Identities = 12/54 (22%), Positives = 15/54 (27%), Gaps = 5/54 (9%)
Query: 38 IRKNTFKNLLNLQTLY----CNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSL 87
I F L + + IHPY L F I + I L
Sbjct: 262 IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRIL 314
>3dmp_A Uracil phosphoribosyltransferase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 2.60A {Burkholderia pseudomallei}
Length = 217
Score = 27.5 bits (61), Expect = 3.0
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 137 SQPVKFSNVHLLSNPLLSHI 156
Q +F N+ +L +PL+ H
Sbjct: 3 KQDSRFPNLFILDHPLIQHK 22
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed
beta-alpha superhelix, leucine-rich repeat structural
genomics; HET: MSE PG4; 1.99A {Bacteroides
thetaiotaomicron}
Length = 329
Score = 27.4 bits (61), Expect = 3.4
Identities = 8/60 (13%), Positives = 17/60 (28%), Gaps = 2/60 (3%)
Query: 23 KVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNN 82
+ + + K L+ + + K+ I +F +LK I
Sbjct: 77 YIYMANFVPAYAFSNVVNGVTKGKQTLEKV--ILSEKIKNIEDAAFKGCDNLKICQIRKK 134
Score = 26.7 bits (59), Expect = 6.6
Identities = 10/56 (17%), Positives = 17/56 (30%), Gaps = 2/56 (3%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSL 87
+ I TF L + L I F+N L ++T++
Sbjct: 235 KTNATTIPDFTFAQKKYLLKI--KLPHNLKTIGQRVFSNCGRLAGTLELPASVTAI 288
>1o5o_A Uracil phosphoribosyltransferase; TM0721, structural genomic PSI,
protein structure initiative, joint center for structu
genomics; HET: U5P; 2.30A {Thermotoga maritima} SCOP:
c.61.1.1
Length = 221
Score = 26.0 bits (57), Expect = 7.5
Identities = 5/23 (21%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 134 LHCSQPVKFSNVHLLSNPLLSHI 156
+H N+ ++ +PL+ H
Sbjct: 6 IHHHHH-HMKNLVVVDHPLIKHK 27
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.135 0.421
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,021,694
Number of extensions: 158263
Number of successful extensions: 1432
Number of sequences better than 10.0: 1
Number of HSP's gapped: 733
Number of HSP's successfully gapped: 461
Length of query: 209
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 120
Effective length of database: 4,216,824
Effective search space: 506018880
Effective search space used: 506018880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (24.8 bits)