RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14513
(209 letters)
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of
glycoprotein Ib alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 56.3 bits (134), Expect = 3e-10
Identities = 14/77 (18%), Positives = 26/77 (33%)
Query: 48 NLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPW 107
N LT + N +L + N++ ++P L + NPW
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
Query: 108 TCDCSIQWLIDYVAKRQ 124
C+C I + ++
Sbjct: 208 LCNCEILYFRRWLQDNA 224
Score = 28.1 bits (61), Expect = 0.78
Identities = 10/76 (13%), Positives = 24/76 (31%), Gaps = 5/76 (6%)
Query: 42 TFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLP-HELGDWDSLEVL 100
+ + + C+ LT + P + +++ N + + L + L L
Sbjct: 5 EVSKVASHLEVNCDKR-NLTALPPDLPKD---TTILHLSENLLYTFSLATLMPYTRLTQL 60
Query: 101 DIQSNPWTCDCSIQWL 116
++ T L
Sbjct: 61 NLDRAELTKLQVDGTL 76
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 49.0 bits (115), Expect = 7e-08
Identities = 22/115 (19%), Positives = 44/115 (38%), Gaps = 4/115 (3%)
Query: 35 LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDW 94
+ ++ + F+ L +L L + N + + + NN L
Sbjct: 165 ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPL 224
Query: 95 DSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLS 149
+L+ L + NPW CDC + L ++ K + + + + CS P + + L
Sbjct: 225 RALQYLRLNDNPWVCDCRARPLWAWLQKFRGS----SSEVPCSLPQRLAGRDLKR 275
Score = 25.2 bits (53), Expect = 7.1
Identities = 10/85 (11%), Positives = 23/85 (27%), Gaps = 1/85 (1%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSL-PHE 90
+ + + +F+ NL L+ + N + +N + S+ P
Sbjct: 41 GNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPAT 100
Query: 91 LGDWDSLEVLDIQSNPWTCDCSIQW 115
L L + +
Sbjct: 101 FHGLGRLHTLHLDRCGLQELGPGLF 125
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor
receptor, N-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 156
Score = 42.9 bits (99), Expect = 4e-06
Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 3/118 (2%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL 91
L + + L L+ L + ++ NA+ SL +
Sbjct: 41 QQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL-SRLNLSFNALESLSWKT 99
Query: 92 GDWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLS 149
SL+ L + NP C C+++WL + + PE L C +++ S
Sbjct: 100 VQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPE--QKLQCHGQGPLAHMPNAS 155
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP
{Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Length = 313
Score = 35.9 bits (81), Expect = 0.002
Identities = 8/61 (13%), Positives = 17/61 (27%)
Query: 49 LQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWT 108
N ++ P L ++ N + + G+ +V +N
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304
Query: 109 C 109
C
Sbjct: 305 C 305
Score = 26.3 bits (56), Expect = 3.0
Identities = 10/54 (18%), Positives = 14/54 (25%)
Query: 52 LYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSN 105
L F + NN +LP L L L++ N
Sbjct: 225 KIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 34.1 bits (77), Expect = 0.005
Identities = 11/91 (12%), Positives = 23/91 (25%)
Query: 67 SFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRT 126
+ N +E + I + + D + +D N L
Sbjct: 13 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNN 72
Query: 127 DPELNYNLHCSQPVKFSNVHLLSNPLLSHIS 157
+ Q + +L+N L +
Sbjct: 73 NRICRIGEGLDQALPDLTELILTNNSLVELG 103
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Length = 305
Score = 34.2 bits (77), Expect = 0.007
Identities = 23/124 (18%), Positives = 40/124 (32%), Gaps = 4/124 (3%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL 91
N+++ I+ FKNL NL TL N K++ I P +F L+ Y++ N + LP ++
Sbjct: 40 NNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKNQLKELPEKM 98
Query: 92 GDWDSLEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNP 151
+ F + LS
Sbjct: 99 PKTLQ---ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 155
Query: 152 LLSH 155
++
Sbjct: 156 RIAD 159
Score = 30.0 bits (66), Expect = 0.16
Identities = 10/64 (15%), Positives = 21/64 (32%), Gaps = 7/64 (10%)
Query: 53 YCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLP-------HELGDWDSLEVLDIQSN 105
+ N P + ++ Y++NN I+++ S + + SN
Sbjct: 223 ELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 282
Query: 106 PWTC 109
P
Sbjct: 283 PVQY 286
Score = 25.4 bits (54), Expect = 6.3
Identities = 11/100 (11%), Positives = 23/100 (23%), Gaps = 5/100 (5%)
Query: 6 NSGSRQDISYDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFN-----PKL 60
+ D L N+ + +Q +Y + N
Sbjct: 201 GLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSN 260
Query: 61 TFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVL 100
F P S + +N + + + + V
Sbjct: 261 DFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 300
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
[TaxId: 1639]}
Length = 384
Score = 31.9 bits (71), Expect = 0.043
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 4/63 (6%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDI 102
+L LQ L+ N S N ++ +N I+ L L + + L +
Sbjct: 325 VSSLTKLQRLFFANNK---VSDVSSLANLTNINWLSAGHNQISDLT-PLANLTRITQLGL 380
Query: 103 QSN 105
Sbjct: 381 NDQ 383
Score = 29.6 bits (65), Expect = 0.27
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDI 102
NL NL L FN ++ I P ++ L+ + NN ++ + L + ++ L
Sbjct: 303 ISNLKNLTYLTLYFN-NISDISP--VSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSA 358
Query: 103 QSN 105
N
Sbjct: 359 GHN 361
Score = 25.0 bits (53), Expect = 8.5
Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 1/82 (1%)
Query: 35 LYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDW 94
L A + + L L L + +N +L + N I+ + +
Sbjct: 270 LGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS-PVSSL 328
Query: 95 DSLEVLDIQSNPWTCDCSIQWL 116
L+ L +N + S+ L
Sbjct: 329 TKLQRLFFANNKVSDVSSLANL 350
Score = 25.0 bits (53), Expect = 9.3
Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 42 TFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNA 83
+ NL N+ L N +++ + P N + + +N+ A
Sbjct: 346 SLANLTNINWLSAGHN-QISDLTP--LANLTRITQLGLNDQA 384
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 192
Score = 30.5 bits (67), Expect = 0.085
Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL 91
+++ I F L L+TL ++ +++ + P SF + SL + +N H
Sbjct: 87 ENKIKEISNKMFLGLHQLKTLNL-YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA 145
Query: 92 GDWDSLEVLDIQSNPWTC 109
+ L + C
Sbjct: 146 WFAEWLRKKSLNGGAARC 163
Score = 27.8 bits (60), Expect = 0.77
Identities = 15/80 (18%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Query: 32 NSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHEL 91
++++ + +F++L +L +L NP H F W K+ A P ++
Sbjct: 111 DNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAE-WLRKKSLNGGAARCGAPSKV 169
Query: 92 GDWDSLEVLDIQSNPWTCDC 111
D +++ D+ + + C
Sbjct: 170 RD---VQIKDLPHSEFKCSS 186
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
pestis [TaxId: 632]}
Length = 353
Score = 30.6 bits (67), Expect = 0.12
Identities = 14/95 (14%), Positives = 33/95 (34%), Gaps = 8/95 (8%)
Query: 15 YDTQYTIMKVQLPYSTANSELYAIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSL 74
+ ++ + P + ++ +L+ L + N KL + P L
Sbjct: 252 SENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIEL-PALPPR---L 306
Query: 75 KEFYINNNAITSLPHELGDWDSLEVLDIQSNPWTC 109
+ + N + +P +L+ L ++ NP
Sbjct: 307 ERLIASFNHLAEVPELPQ---NLKQLHVEYNPLRE 338
Score = 25.6 bits (54), Expect = 4.9
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 8/60 (13%)
Query: 45 NLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQS 104
L+ L +FN L + N LK+ ++ N + P S+E L + S
Sbjct: 302 LPPRLERLIASFN-HLAEVPELPQN----LKQLHVEYNPLREFPDIPE---SVEDLRMNS 353
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase
alpha-subunit, C-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 29.7 bits (66), Expect = 0.12
Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 2/73 (2%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPH--ELGDWDSLEVL 100
L L+ L + N L+E + NN + L L +L
Sbjct: 36 PPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 95
Query: 101 DIQSNPWTCDCSI 113
++Q N + I
Sbjct: 96 NLQGNSLCQEEGI 108
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 210
Score = 28.1 bits (61), Expect = 0.62
Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 47 LNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQS 104
L + +++ I P L+ Y++ N I+ L L +L+VL++ S
Sbjct: 155 LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFS 209
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae
(Chlamydomonas reinhardtii) [TaxId: 3055]}
Length = 198
Score = 27.3 bits (59), Expect = 1.2
Identities = 13/148 (8%), Positives = 46/148 (31%), Gaps = 4/148 (2%)
Query: 37 AIRKNTFKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDS 96
+ + + + + + + K ++ N I + L ++
Sbjct: 13 IFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS-LSGMEN 71
Query: 97 LEVLDIQSNPWTCDCSIQWLIDYVAKRQRTDPELNYNLHCSQPVKFSNVHLLSNPLLSHI 156
L +L + N ++ + D + + + ++ + V +++ +N + +
Sbjct: 72 LRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWG 131
Query: 157 SGECVKGALVISQLSTQFYKLYPLLFIM 184
+ + + +L PL
Sbjct: 132 EIDKLAA---LDKLEDLLLAGNPLYNDY 156
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes
[TaxId: 1639]}
Length = 227
Score = 26.1 bits (56), Expect = 2.6
Identities = 7/47 (14%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 62 FIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDIQSNPWT 108
N L ++N I+ + L +L + +++N +
Sbjct: 163 VSDLTPLANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLKNNQIS 208
Score = 26.1 bits (56), Expect = 2.9
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 43 FKNLLNLQTLYCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHELGDWDSLEVLDI 102
NL L TL + N K++ I P + +L E ++ NN I+ + L + +L ++ +
Sbjct: 169 LANLSKLTTLKADDN-KISDISP--LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTL 224
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 25.6 bits (54), Expect = 4.4
Identities = 10/54 (18%), Positives = 16/54 (29%), Gaps = 1/54 (1%)
Query: 53 YCNFNPKLTFIHPYSFNNDWSLKEFYINNNAITSLPHE-LGDWDSLEVLDIQSN 105
+ N L + F+ I+ I SLP L + L +
Sbjct: 182 NLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235
>d2bbaa1 b.18.1.4 (A:17-196) Ephrin type-B receptor 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 180
Score = 25.1 bits (55), Expect = 5.8
Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 13/66 (19%)
Query: 85 TSLPHELGDWDSLEVLDIQSNPW----TCDCSIQ-----WLI-DYVAKR--QRTDPELNY 132
+ P G W+ L LD + + CD WL +V +R L +
Sbjct: 17 VTFPQVDGQWEELSGLDEEQHSVRTYEVCDVQRAPGQAHWLRTGWVPRRGAVHVYATLRF 76
Query: 133 NL-HCS 137
+ C
Sbjct: 77 TMLECL 82
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.135 0.421
Gapped
Lambda K H
0.267 0.0428 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 767,709
Number of extensions: 33738
Number of successful extensions: 118
Number of sequences better than 10.0: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 47
Length of query: 209
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 128
Effective length of database: 1,295,466
Effective search space: 165819648
Effective search space used: 165819648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.2 bits)