BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14514
         (91 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3KNV|A Chain A, Crystal Structure Of The Ring And First Zinc Finger
           Domains Of Traf2
          Length = 141

 Score = 26.6 bits (57), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 6   TVLKGIYEENLPVFEGSSVWDSDYYTGQVGSYP 38
            V +GIYEE + + E SS +  +    +V S P
Sbjct: 72  CVHEGIYEEGISILESSSAFPDNAARREVESLP 104


>pdb|1MPF|A Chain A, Structural And Functional Alterations Of A Colicin
           Resistant Mutant Of Ompf-porin From Escherichia Coli
          Length = 340

 Score = 25.8 bits (55), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 12  YEENLPVFEGSSVWDSDYYTGQVGS 36
           Y + LP F+G + +  D++ G+VG 
Sbjct: 111 YTDMLPEFDGDTAYSDDFFVGRVGG 135


>pdb|1US3|A Chain A, Native Xylanase10c From Cellvibrio Japonicus
          Length = 530

 Score = 25.8 bits (55), Expect = 6.9,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 8/46 (17%)

Query: 13  EENLPVFEGSSVWDSDYYTGQVGSYPYSGFYQDLSANHNDFLAQLD 58
           E N+ V   + VW SDY   QV       F ++ + +  DFLA LD
Sbjct: 240 ENNMTVHGHALVWHSDY---QV-----PNFMKNWAGSAEDFLAALD 277


>pdb|1US2|A Chain A, Xylanase10c (Mutant E385a) From Cellvibrio Japonicus In
           Complex With Xylopentaose
          Length = 530

 Score = 25.8 bits (55), Expect = 6.9,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 8/46 (17%)

Query: 13  EENLPVFEGSSVWDSDYYTGQVGSYPYSGFYQDLSANHNDFLAQLD 58
           E N+ V   + VW SDY   QV       F ++ + +  DFLA LD
Sbjct: 240 ENNMTVHGHALVWHSDY---QV-----PNFMKNWAGSAEDFLAALD 277


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.140    0.440 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,855,532
Number of Sequences: 62578
Number of extensions: 106590
Number of successful extensions: 374
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 350
Number of HSP's gapped (non-prelim): 39
length of query: 91
length of database: 14,973,337
effective HSP length: 58
effective length of query: 33
effective length of database: 11,343,813
effective search space: 374345829
effective search space used: 374345829
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)