BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14514
(91 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O35245|PKD2_MOUSE Polycystin-2 OS=Mus musculus GN=Pkd2 PE=1 SV=2
Length = 966
Score = 72.8 bits (177), Expect = 6e-13, Method: Composition-based stats.
Identities = 35/73 (47%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 19 FEGSSVWDSDYYTGQVGSYPYSGFYQDLSANHNDFLAQLDMLRKGGWITRATRVVFIDFS 78
GSS W G + SY +G+Y DLS + AQL LR+ W+ R TR FIDFS
Sbjct: 372 LNGSSHW------GIIASYSGAGYYLDLSRTREETAAQLAGLRRNFWLDRGTRAAFIDFS 425
Query: 79 MYNANVNLFCFVK 91
+YNAN+NLFC V+
Sbjct: 426 VYNANINLFCVVR 438
>sp|Q4GZT3|PKD2_BOVIN Polycystin-2 OS=Bos taurus GN=PKD2 PE=2 SV=1
Length = 970
Score = 70.1 bits (170), Expect = 3e-12, Method: Composition-based stats.
Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 6/73 (8%)
Query: 19 FEGSSVWDSDYYTGQVGSYPYSGFYQDLSANHNDFLAQLDMLRKGGWITRATRVVFIDFS 78
GSS W G + +Y +G+Y DLS + AQ+ L+K W+ R TR +FIDF+
Sbjct: 376 LNGSSHW------GMIATYSGAGYYLDLSRTREETAAQVANLKKNVWLDRGTRAIFIDFT 429
Query: 79 MYNANVNLFCFVK 91
+YNAN+NLFC ++
Sbjct: 430 VYNANINLFCVIR 442
>sp|Q13563|PKD2_HUMAN Polycystin-2 OS=Homo sapiens GN=PKD2 PE=1 SV=3
Length = 968
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 44/71 (61%), Gaps = 6/71 (8%)
Query: 21 GSSVWDSDYYTGQVGSYPYSGFYQDLSANHNDFLAQLDMLRKGGWITRATRVVFIDFSMY 80
GSS W G + +Y +G+Y DLS + AQ+ L+K W+ R TR FIDFS+Y
Sbjct: 376 GSSHW------GIIATYSGAGYYLDLSRTREETAAQVASLKKNVWLDRGTRATFIDFSVY 429
Query: 81 NANVNLFCFVK 91
NAN+NLFC V+
Sbjct: 430 NANINLFCVVR 440
>sp|Q9P0L9|PK2L1_HUMAN Polycystic kidney disease 2-like 1 protein OS=Homo sapiens
GN=PKD2L1 PE=1 SV=1
Length = 805
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 40/60 (66%)
Query: 32 GQVGSYPYSGFYQDLSANHNDFLAQLDMLRKGGWITRATRVVFIDFSMYNANVNLFCFVK 91
G++ SY G+Y DL + L L++G W+ R TRVVFIDFS+YNAN+NLFC ++
Sbjct: 260 GRLTSYSGGGYYLDLPGSRQGSAEALRALQEGLWLDRGTRVVFIDFSVYNANINLFCVLR 319
>sp|Q9NZM6|PK2L2_HUMAN Polycystic kidney disease 2-like 2 protein OS=Homo sapiens
GN=PKD2L2 PE=2 SV=2
Length = 624
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 43/66 (65%)
Query: 26 DSDYYTGQVGSYPYSGFYQDLSANHNDFLAQLDMLRKGGWITRATRVVFIDFSMYNANVN 85
+S ++ G +G Y G+ LS + ++ + LR WITR TRV+FIDFS+YNANVN
Sbjct: 184 NSPWHWGFLGVYRNGGYIFTLSKSKSETKNKFIDLRLNSWITRGTRVIFIDFSLYNANVN 243
Query: 86 LFCFVK 91
LFC ++
Sbjct: 244 LFCIIR 249
>sp|Q9JLG4|PK2L2_MOUSE Polycystic kidney disease 2-like 2 protein OS=Mus musculus
GN=Pkd2l2 PE=2 SV=2
Length = 621
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 42/65 (64%)
Query: 27 SDYYTGQVGSYPYSGFYQDLSANHNDFLAQLDMLRKGGWITRATRVVFIDFSMYNANVNL 86
+ ++ G VG Y G+ LS + ++ A+ LR WI+R TR VFIDFS+YNANVNL
Sbjct: 185 APWHWGFVGVYRDGGYIVTLSKSKSETKAKFVDLRLNNWISRGTRAVFIDFSLYNANVNL 244
Query: 87 FCFVK 91
FC ++
Sbjct: 245 FCIIR 249
>sp|Q9U1S7|PKD2_CAEEL Polycystin-2 OS=Caenorhabditis elegans GN=pkd-2 PE=1 SV=3
Length = 716
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 32 GQVGSYPYSGFYQDLS-ANHNDFLAQLDMLRKGGWITRATRVVFIDFSMYNANVNLFCFV 90
G + SY GF Q L A + + + L+ WI R +R + +DF++YNAN+NLFC V
Sbjct: 230 GTIASYGGGGFVQRLPVAGSTEAQSAIATLKANRWIDRGSRAIIVDFALYNANINLFCVV 289
Query: 91 K 91
K
Sbjct: 290 K 290
>sp|Q7TN88|PK1L2_MOUSE Polycystic kidney disease protein 1-like 2 OS=Mus musculus GN=Pkd1l2
PE=2 SV=1
Length = 2461
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 32/59 (54%)
Query: 32 GQVGSYPYSGFYQDLSANHNDFLAQLDMLRKGGWITRATRVVFIDFSMYNANVNLFCFV 90
G++ Y G+ L +H L L W+ TR VF++F++YNANVNLFC V
Sbjct: 2097 GKLTLYGGGGYVVPLGTDHQSASRILQYLFDNSWLDALTRAVFVEFTVYNANVNLFCTV 2155
>sp|Q2EG98|PK1L3_MOUSE Polycystic kidney disease protein 1-like 3 OS=Mus musculus GN=Pkd1l3
PE=2 SV=2
Length = 2201
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 32 GQVGSYPYSGFYQDLSANHNDFLAQLDMLRKGGWITRATRVVFIDFSMYNANVNLFCFV 90
G++ +Y G+ L NH+ L L + W+ T+ +F++F+++NANVNL C V
Sbjct: 1815 GELATYSGGGYVVRLGRNHSAATRVLQHLEQRRWLDHCTKALFVEFTVFNANVNLLCAV 1873
>sp|Q7Z442|PK1L2_HUMAN Polycystic kidney disease protein 1-like 2 OS=Homo sapiens GN=PKD1L2
PE=1 SV=4
Length = 2459
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 20 EGSSVWDSDYYTGQVGSYPYSGFYQDLSANHNDFLAQLDMLRKGGWITRATRVVFIDFSM 79
+G +W G++ Y G+ L + + L L W+ TR VF++ ++
Sbjct: 2088 QGYPIW------GKLTVYRGGGYVVPLGTDRQKHVKILRYLFDNTWLDALTRAVFVESTV 2141
Query: 80 YNANVNLFCFV 90
YNANVNLFC V
Sbjct: 2142 YNANVNLFCIV 2152
>sp|Q09624|PKD1_CAEEL Location of vulva defective 1 OS=Caenorhabditis elegans GN=lov-1 PE=1
SV=4
Length = 3284
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%)
Query: 18 VFEGSSVWDSDYYTGQVGSYPYSGFYQDLSANHNDFLAQLDMLRKGGWITRATRVVFIDF 77
++ S ++ +G + SY G+ +S + + + L WI TR V I+F
Sbjct: 2834 TYKTSEELSTETVSGLLYSYSGGGYTISMSGTQAEIITLFNKLDSERWIDDHTRAVIIEF 2893
Query: 78 SMYNANVNLFCFVK 91
S YNA +N F V+
Sbjct: 2894 SAYNAQINYFSVVQ 2907
>sp|O08852|PKD1_MOUSE Polycystin-1 OS=Mus musculus GN=Pkd1 PE=1 SV=2
Length = 4293
Score = 34.7 bits (78), Expect = 0.20, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 29 YYTGQVGSYPYSGFYQDLSANHNDFLAQLDMLRKGGWITRATRVVFIDFSMYNANVNL 86
+Y G Y G+ Q+L + + A+L L+ W+ +R VF++ + Y+ V L
Sbjct: 3796 WYWGYCAVYDSGGYIQELGLSLEESRARLGFLQLHNWLDSRSRAVFVELTRYSPAVGL 3853
>sp|Q8TDX9|PK1L1_HUMAN Polycystic kidney disease protein 1-like 1 OS=Homo sapiens GN=PKD1L1
PE=2 SV=1
Length = 2849
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 57 LDMLRKGGWITRATRVVFIDFSMYNANVNLFCFV 90
L LR WI R+TR V + F++YN LF V
Sbjct: 2456 LSRLRASMWIDRSTRAVSVHFTLYNPPTQLFTSV 2489
>sp|B0C1T8|UPPP_ACAM1 Undecaprenyl-diphosphatase OS=Acaryochloris marina (strain MBIC
11017) GN=uppP PE=3 SV=1
Length = 266
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 1 MFLVQTVLKGIYE---ENLPVFEGSSVWDSDYYTGQVGSYPYSGFYQDLSANHNDFLAQL 57
M L+Q ++ GI + E LPV + + YY G P Y D++ N F A L
Sbjct: 1 MTLLQAIILGIVQGLTEFLPVSSSGHLVLASYYLGWWEKLP---LYVDIATNTGTFFAVL 57
Query: 58 DMLRKGGW 65
+LRK W
Sbjct: 58 VVLRKDVW 65
>sp|P98161|PKD1_HUMAN Polycystin-1 OS=Homo sapiens GN=PKD1 PE=1 SV=3
Length = 4303
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Query: 10 GIYEENLPVFEGSSVWDSDYYTGQVGSYPYSGFYQDLSANHNDFLAQLDMLRKGGWITRA 69
G + + P G+ W G Y G+ Q+L + + +L L+ W+
Sbjct: 3793 GTWAYSAPDLLGAWSW------GSCAVYDSGGYVQELGLSLEESRDRLRFLQLHNWLDNR 3846
Query: 70 TRVVFIDFSMYNANVNL 86
+R VF++ + Y+ V L
Sbjct: 3847 SRAVFLELTRYSPAVGL 3863
>sp|Q9NTG1|PKDRE_HUMAN Polycystic kidney disease and receptor for egg jelly-related protein
OS=Homo sapiens GN=PKDREJ PE=2 SV=2
Length = 2253
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 56 QLDMLRKGGWITRATRVVFIDFSMYNANVNLFCFV 90
+L L++ W+ T V ++ + +N ++NLFC +
Sbjct: 1897 RLKELQESNWLDEKTWAVVLELTTFNPDINLFCSI 1931
>sp|P30415|NKTR_MOUSE NK-tumor recognition protein OS=Mus musculus GN=Nktr PE=1 SV=4
Length = 1453
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 22 SSVWDSDYYTGQVGSYPYSGFYQDLS-ANHND 52
SS WD + + S+ Y+G+Y DLS A H+D
Sbjct: 394 SSRWDERSLSQRSRSWSYNGYYSDLSTARHSD 425
>sp|A7GUR7|ENO_BACCN Enolase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98)
GN=eno PE=3 SV=1
Length = 430
Score = 29.3 bits (64), Expect = 8.0, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 3 LVQTVLKGIYEENLPVFEGSSVWDSDYYTGQVGSYPYSGFYQDL-SANHNDFLAQL 57
+++ + K Y+ VF G V S++Y + G Y SG + + SA DF +L
Sbjct: 222 IIEAIEKAGYKAGEDVFLGMDVASSEFYNKETGKYDLSGEGRSMTSAEMVDFYEEL 277
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.140 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,046,556
Number of Sequences: 539616
Number of extensions: 1230693
Number of successful extensions: 3731
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 3715
Number of HSP's gapped (non-prelim): 20
length of query: 91
length of database: 191,569,459
effective HSP length: 61
effective length of query: 30
effective length of database: 158,652,883
effective search space: 4759586490
effective search space used: 4759586490
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)