Query psy14514
Match_columns 91
No_of_seqs 104 out of 300
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 21:51:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14514.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14514hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h0d_A CTSR; protein DNA compl 70.0 3.5 0.00012 28.8 3.0 22 49-70 93-114 (155)
2 2fbi_A Probable transcriptiona 48.7 19 0.00064 21.9 3.4 34 45-78 59-97 (142)
3 3hsr_A HTH-type transcriptiona 48.3 13 0.00043 23.2 2.6 34 45-78 59-97 (140)
4 1ub9_A Hypothetical protein PH 47.8 22 0.00074 20.6 3.4 34 45-78 39-77 (100)
5 2qvo_A Uncharacterized protein 47.7 25 0.00086 20.8 3.8 34 45-78 39-74 (95)
6 2nnn_A Probable transcriptiona 45.7 22 0.00076 21.5 3.4 34 45-78 61-99 (140)
7 2frh_A SARA, staphylococcal ac 45.4 16 0.00056 22.7 2.8 34 45-78 62-100 (127)
8 2gxg_A 146AA long hypothetical 44.8 23 0.00078 21.7 3.4 34 45-78 59-97 (146)
9 3bro_A Transcriptional regulat 44.3 18 0.00061 22.1 2.8 34 45-78 59-97 (141)
10 2oz6_A Virulence factor regula 44.2 18 0.00061 23.4 2.9 30 46-75 174-203 (207)
11 3oop_A LIN2960 protein; protei 44.2 17 0.0006 22.4 2.7 34 45-78 60-98 (143)
12 1jgs_A Multiple antibiotic res 44.2 25 0.00086 21.3 3.5 34 45-78 57-95 (138)
13 3e6m_A MARR family transcripti 43.7 23 0.00079 22.5 3.3 34 45-78 76-114 (161)
14 2fmy_A COOA, carbon monoxide o 43.5 23 0.00078 23.3 3.4 30 46-75 177-207 (220)
15 3eco_A MEPR; mutlidrug efflux 43.4 19 0.00066 22.0 2.8 34 45-78 56-94 (139)
16 3ryp_A Catabolite gene activat 42.7 19 0.00065 23.2 2.8 30 46-75 177-206 (210)
17 3bdd_A Regulatory protein MARR 42.3 21 0.00073 21.7 2.9 34 45-78 54-92 (142)
18 2eth_A Transcriptional regulat 41.8 34 0.0012 21.4 3.9 34 45-78 67-105 (154)
19 2hr3_A Probable transcriptiona 41.7 21 0.0007 22.0 2.8 34 45-78 59-97 (147)
20 3e6c_C CPRK, cyclic nucleotide 41.7 25 0.00085 23.7 3.4 30 46-75 187-216 (250)
21 3dkw_A DNR protein; CRP-FNR, H 41.6 19 0.00066 23.5 2.8 31 45-75 187-217 (227)
22 3tgn_A ADC operon repressor AD 41.6 15 0.00053 22.6 2.2 33 45-77 60-97 (146)
23 1lj9_A Transcriptional regulat 41.4 29 0.00098 21.2 3.4 34 45-78 52-90 (144)
24 3nmr_A Cugbp ELAV-like family 41.3 32 0.0011 21.4 3.7 38 41-78 137-174 (175)
25 3s2w_A Transcriptional regulat 41.1 20 0.00067 22.7 2.6 34 45-78 73-111 (159)
26 2dgp_A Bruno-like 4, RNA bindi 41.0 43 0.0015 19.6 4.1 39 41-79 56-94 (106)
27 4ev0_A Transcription regulator 40.6 22 0.00074 23.1 2.9 30 46-75 173-202 (216)
28 2pex_A Transcriptional regulat 40.4 20 0.00068 22.4 2.6 34 45-78 70-108 (153)
29 3e97_A Transcriptional regulat 40.2 24 0.00081 23.3 3.0 30 46-75 185-214 (231)
30 3f3x_A Transcriptional regulat 39.4 25 0.00086 21.6 2.9 34 45-78 59-97 (144)
31 3deu_A Transcriptional regulat 39.1 25 0.00086 22.7 3.0 34 45-78 77-115 (166)
32 1tbx_A ORF F-93, hypothetical 38.7 41 0.0014 19.7 3.7 33 46-78 36-70 (99)
33 3kcc_A Catabolite gene activat 38.6 29 0.001 23.7 3.4 30 46-75 227-256 (260)
34 2dnh_A Bruno-like 5, RNA bindi 38.4 36 0.0012 19.9 3.5 39 41-79 57-95 (105)
35 3iwz_A CAP-like, catabolite ac 38.2 24 0.00083 23.1 2.8 30 46-75 197-226 (230)
36 3d0s_A Transcriptional regulat 37.9 25 0.00085 23.1 2.9 30 46-75 187-216 (227)
37 3nrv_A Putative transcriptiona 37.8 18 0.00062 22.4 2.0 25 45-69 63-87 (148)
38 1x60_A Sporulation-specific N- 37.7 24 0.00083 20.3 2.5 27 38-64 6-34 (79)
39 2fbh_A Transcriptional regulat 37.6 21 0.00072 21.8 2.3 34 45-78 61-99 (146)
40 2rdp_A Putative transcriptiona 37.4 31 0.0011 21.2 3.1 34 45-78 65-103 (150)
41 3dv8_A Transcriptional regulat 37.1 26 0.0009 22.7 2.8 30 46-75 179-208 (220)
42 2zcw_A TTHA1359, transcription 37.0 26 0.0009 22.7 2.8 30 46-75 156-185 (202)
43 1z91_A Organic hydroperoxide r 36.9 30 0.001 21.2 3.0 34 45-78 63-101 (147)
44 2hzt_A Putative HTH-type trans 36.7 39 0.0013 20.4 3.5 34 45-78 36-75 (107)
45 3b02_A Transcriptional regulat 36.6 24 0.00083 22.8 2.6 30 46-75 149-178 (195)
46 4hbl_A Transcriptional regulat 36.5 23 0.00079 22.2 2.4 34 45-78 64-102 (149)
47 2gau_A Transcriptional regulat 36.4 33 0.0011 22.6 3.3 30 46-75 190-219 (232)
48 4aik_A Transcriptional regulat 36.0 26 0.00089 22.5 2.7 34 45-78 55-93 (151)
49 3bj6_A Transcriptional regulat 35.8 24 0.0008 21.9 2.3 34 45-78 63-101 (152)
50 3bpv_A Transcriptional regulat 35.7 32 0.0011 20.8 2.9 34 45-78 52-90 (138)
51 2nyx_A Probable transcriptiona 35.6 39 0.0013 21.6 3.5 34 45-78 68-106 (168)
52 3cjn_A Transcriptional regulat 35.0 38 0.0013 21.2 3.3 34 45-78 75-113 (162)
53 1c4q_A Protein (shiga-like tox 34.5 24 0.00083 21.2 2.1 15 74-89 8-22 (69)
54 2pg4_A Uncharacterized protein 34.4 24 0.00082 20.8 2.1 34 45-78 39-76 (95)
55 3g3z_A NMB1585, transcriptiona 34.1 22 0.00076 21.9 2.0 34 45-78 54-92 (145)
56 2a61_A Transcriptional regulat 34.1 35 0.0012 20.8 2.9 34 45-78 56-94 (145)
57 2bv6_A MGRA, HTH-type transcri 33.6 23 0.00078 21.7 2.0 34 45-78 60-98 (142)
58 3fm5_A Transcriptional regulat 33.6 29 0.00098 21.6 2.5 34 45-78 63-101 (150)
59 1s3j_A YUSO protein; structura 32.9 35 0.0012 21.1 2.8 34 45-78 60-98 (155)
60 3bja_A Transcriptional regulat 32.7 29 0.00099 20.9 2.4 34 45-78 56-94 (139)
61 3la7_A Global nitrogen regulat 32.4 33 0.0011 23.0 2.8 30 46-75 203-232 (243)
62 1z7u_A Hypothetical protein EF 32.3 36 0.0012 20.8 2.8 34 45-78 44-83 (112)
63 4b8x_A SCO5413, possible MARR- 32.1 32 0.0011 21.8 2.6 34 45-78 60-98 (147)
64 1zyb_A Transcription regulator 32.0 35 0.0012 22.7 2.9 29 46-74 196-224 (232)
65 3k0l_A Repressor protein; heli 31.3 22 0.00075 22.6 1.7 34 45-78 69-107 (162)
66 2qww_A Transcriptional regulat 30.4 38 0.0013 21.0 2.7 24 45-68 64-87 (154)
67 2bgc_A PRFA; bacterial infecti 30.4 37 0.0013 22.7 2.8 30 46-75 179-209 (238)
68 3nqo_A MARR-family transcripti 30.1 52 0.0018 21.6 3.5 34 45-78 66-104 (189)
69 2lkz_A RNA-binding protein 5; 29.3 93 0.0032 18.5 4.3 36 41-78 54-92 (95)
70 2fa5_A Transcriptional regulat 28.9 29 0.001 21.7 2.0 25 45-69 72-96 (162)
71 1sfx_A Conserved hypothetical 28.9 84 0.0029 17.9 3.9 25 45-69 43-67 (109)
72 1ku9_A Hypothetical protein MJ 28.8 40 0.0014 20.4 2.5 33 45-77 50-87 (152)
73 3cdh_A Transcriptional regulat 28.3 47 0.0016 20.6 2.8 25 45-69 66-90 (155)
74 1hsj_A Fusion protein consisti 26.8 44 0.0015 25.0 2.9 34 45-78 429-467 (487)
75 2fsw_A PG_0823 protein; alpha- 26.8 68 0.0023 19.3 3.3 34 45-78 47-86 (107)
76 2oqg_A Possible transcriptiona 26.4 88 0.003 18.4 3.8 33 45-77 43-77 (114)
77 3u2r_A Regulatory protein MARR 26.3 35 0.0012 21.7 2.0 34 45-78 71-109 (168)
78 3jw4_A Transcriptional regulat 26.3 18 0.00061 22.6 0.5 25 45-69 66-90 (148)
79 2x4h_A Hypothetical protein SS 25.5 57 0.0019 20.0 2.8 27 45-71 40-66 (139)
80 1ft9_A Carbon monoxide oxidati 25.3 43 0.0015 21.9 2.4 27 46-72 173-199 (222)
81 2vn2_A DNAD, chromosome replic 25.0 60 0.0021 20.5 2.9 27 45-71 60-86 (128)
82 3ech_A MEXR, multidrug resista 24.9 24 0.00083 21.7 1.0 34 45-78 60-98 (142)
83 3dfg_A Xcrecx, regulatory prot 23.7 58 0.002 21.7 2.8 22 47-68 45-66 (162)
84 1p4x_A Staphylococcal accessor 23.1 46 0.0016 23.7 2.3 35 44-78 182-221 (250)
85 3e3v_A Regulatory protein RECX 22.9 60 0.0021 21.9 2.8 22 47-68 46-67 (177)
86 3c1d_A Protein ORAA, regulator 21.9 63 0.0022 21.3 2.7 21 48-68 44-64 (159)
87 1yyv_A Putative transcriptiona 21.3 72 0.0025 20.3 2.8 34 45-78 57-96 (131)
88 3gon_A Phosphomevalonate kinas 21.1 85 0.0029 22.0 3.3 25 40-64 296-320 (335)
89 2heo_A Z-DNA binding protein 1 20.8 62 0.0021 18.2 2.1 24 45-68 34-57 (67)
90 1b7f_A Protein (SXL-lethal pro 20.6 1.2E+02 0.004 18.6 3.6 37 41-78 132-168 (168)
91 2d1h_A ST1889, 109AA long hypo 20.3 62 0.0021 18.5 2.1 25 45-69 45-69 (109)
No 1
>3h0d_A CTSR; protein DNA complex, winged HTH domain, 4-helix bundle, DNA tandem repeat, transcription/DNA complex; HET: DNA; 2.40A {Bacillus stearothermophilus}
Probab=69.98 E-value=3.5 Score=28.77 Aligned_cols=22 Identities=9% Similarity=0.039 Sum_probs=18.5
Q ss_pred CHHHHHHHHHHhhhCCcccCCC
Q psy14514 49 NHNDFLAQLDMLRKGGWITRAT 70 (91)
Q Consensus 49 ~~~~a~~~L~~L~~~~WiD~~T 70 (91)
+..+|..+++.|.+.+.|.++-
T Consensus 93 s~~~a~~ii~~L~e~~~it~RE 114 (155)
T 3h0d_A 93 SQSSAEDVIKRLMEEKVISERE 114 (155)
T ss_dssp CHHHHHHHHHHHHHTTSSCHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHH
Confidence 5689999999999999987653
No 2
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=48.73 E-value=19 Score=21.94 Aligned_cols=34 Identities=18% Similarity=0.330 Sum_probs=27.2
Q ss_pred ECCCCHHHHHHHHHHhhhCCcccCC-----CcEEEEEee
Q psy14514 45 DLSANHNDFLAQLDMLRKGGWITRA-----TRVVFIDFS 78 (91)
Q Consensus 45 ~L~~~~~~a~~~L~~L~~~~WiD~~-----TRAvfvEFt 78 (91)
.++-++......|+.|.+.+||.+. -|.+.+..|
T Consensus 59 ~l~~s~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT 97 (142)
T 2fbi_A 59 QACILRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLT 97 (142)
T ss_dssp HTTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEEC
T ss_pred HHCCCHhHHHHHHHHHHHCCCEEeecCCCCCCeeEEEEC
Confidence 4677888999999999999999874 366666654
No 3
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=48.31 E-value=13 Score=23.16 Aligned_cols=34 Identities=18% Similarity=0.305 Sum_probs=25.7
Q ss_pred ECCCCHHHHHHHHHHhhhCCcccCCC-----cEEEEEee
Q psy14514 45 DLSANHNDFLAQLDMLRKGGWITRAT-----RVVFIDFS 78 (91)
Q Consensus 45 ~L~~~~~~a~~~L~~L~~~~WiD~~T-----RAvfvEFt 78 (91)
.++-++......++.|.+.+||.+.. |++.+..|
T Consensus 59 ~l~~~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT 97 (140)
T 3hsr_A 59 RVFLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLT 97 (140)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEEC
T ss_pred HHCCChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEC
Confidence 46778899999999999999998743 66666554
No 4
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=47.77 E-value=22 Score=20.56 Aligned_cols=34 Identities=9% Similarity=0.260 Sum_probs=25.6
Q ss_pred ECCCCHHHHHHHHHHhhhCCcccCC-----CcEEEEEee
Q psy14514 45 DLSANHNDFLAQLDMLRKGGWITRA-----TRVVFIDFS 78 (91)
Q Consensus 45 ~L~~~~~~a~~~L~~L~~~~WiD~~-----TRAvfvEFt 78 (91)
.++-++......|+.|++.++|.+. -|.+.+..|
T Consensus 39 ~l~is~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt 77 (100)
T 1ub9_A 39 VLDLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEIT 77 (100)
T ss_dssp HTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEEC
T ss_pred HHCcCHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEEC
Confidence 4677888899999999999999853 355555443
No 5
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=47.68 E-value=25 Score=20.78 Aligned_cols=34 Identities=9% Similarity=0.184 Sum_probs=25.3
Q ss_pred ECCCCHHHHHHHHHHhhhCCcc--cCCCcEEEEEee
Q psy14514 45 DLSANHNDFLAQLDMLRKGGWI--TRATRVVFIDFS 78 (91)
Q Consensus 45 ~L~~~~~~a~~~L~~L~~~~Wi--D~~TRAvfvEFt 78 (91)
.++-++......|+.|.+.+|| ...-|...+..|
T Consensus 39 ~l~i~~~tvs~~l~~Le~~Glv~~~~d~R~~~v~LT 74 (95)
T 2qvo_A 39 KVNSPHSYVWLIIKKFEEAKMVECELEGRTKIIRLT 74 (95)
T ss_dssp HSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEC
T ss_pred HHCcCHHHHHHHHHHHHHCcCccCCCCCCeEEEEEC
Confidence 4677889999999999999999 223455555544
No 6
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=45.74 E-value=22 Score=21.53 Aligned_cols=34 Identities=21% Similarity=0.312 Sum_probs=27.0
Q ss_pred ECCCCHHHHHHHHHHhhhCCcccCC-----CcEEEEEee
Q psy14514 45 DLSANHNDFLAQLDMLRKGGWITRA-----TRVVFIDFS 78 (91)
Q Consensus 45 ~L~~~~~~a~~~L~~L~~~~WiD~~-----TRAvfvEFt 78 (91)
.++-++......++.|.+.+||.+. -|.+.+..|
T Consensus 61 ~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT 99 (140)
T 2nnn_A 61 LTAMDAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLS 99 (140)
T ss_dssp HTTCCHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEEC
T ss_pred HHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEEC
Confidence 4678889999999999999999873 456666554
No 7
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=45.37 E-value=16 Score=22.65 Aligned_cols=34 Identities=15% Similarity=0.337 Sum_probs=27.2
Q ss_pred ECCCCHHHHHHHHHHhhhCCcccCC-----CcEEEEEee
Q psy14514 45 DLSANHNDFLAQLDMLRKGGWITRA-----TRVVFIDFS 78 (91)
Q Consensus 45 ~L~~~~~~a~~~L~~L~~~~WiD~~-----TRAvfvEFt 78 (91)
.|+-++......|+.|.+.+||.+. -|++.|..|
T Consensus 62 ~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT 100 (127)
T 2frh_A 62 HLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVN 100 (127)
T ss_dssp HSSSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECC
T ss_pred HHCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEEC
Confidence 5677888999999999999999873 566666554
No 8
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=44.83 E-value=23 Score=21.70 Aligned_cols=34 Identities=21% Similarity=0.390 Sum_probs=26.9
Q ss_pred ECCCCHHHHHHHHHHhhhCCcccCC-----CcEEEEEee
Q psy14514 45 DLSANHNDFLAQLDMLRKGGWITRA-----TRVVFIDFS 78 (91)
Q Consensus 45 ~L~~~~~~a~~~L~~L~~~~WiD~~-----TRAvfvEFt 78 (91)
.++-++......|+.|.+.+||.+. .|.+.+..|
T Consensus 59 ~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT 97 (146)
T 2gxg_A 59 RYFVTQSAITASVDKLEEMGLVVRVRDREDRRKILIEIT 97 (146)
T ss_dssp HTTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEEC
T ss_pred HhCCCchhHHHHHHHHHHCCCEEeecCCCCCceEEEEEC
Confidence 4678889999999999999999763 566666554
No 9
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=44.28 E-value=18 Score=22.06 Aligned_cols=34 Identities=12% Similarity=0.179 Sum_probs=26.7
Q ss_pred ECCCCHHHHHHHHHHhhhCCcccCC-----CcEEEEEee
Q psy14514 45 DLSANHNDFLAQLDMLRKGGWITRA-----TRVVFIDFS 78 (91)
Q Consensus 45 ~L~~~~~~a~~~L~~L~~~~WiD~~-----TRAvfvEFt 78 (91)
.++-++......++.|.+.+||.+. -|.+.+..|
T Consensus 59 ~l~~~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT 97 (141)
T 3bro_A 59 EFSIKSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLT 97 (141)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEEC
T ss_pred HHCCCcchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEEC
Confidence 4677888999999999999999763 466666654
No 10
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=44.24 E-value=18 Score=23.36 Aligned_cols=30 Identities=10% Similarity=0.181 Sum_probs=24.0
Q ss_pred CCCCHHHHHHHHHHhhhCCcccCCCcEEEE
Q psy14514 46 LSANHNDFLAQLDMLRKGGWITRATRVVFI 75 (91)
Q Consensus 46 L~~~~~~a~~~L~~L~~~~WiD~~TRAvfv 75 (91)
||-+++...++++.|++.++|+..-+.+.|
T Consensus 174 lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i 203 (207)
T 2oz6_A 174 VGCSREMVGRVLKSLEEQGLVHVKGKTMVV 203 (207)
T ss_dssp HTSCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred hCCCHHHHHHHHHHHHHCCCEEecCCEEEE
Confidence 566778888899999999999986665543
No 11
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=44.20 E-value=17 Score=22.38 Aligned_cols=34 Identities=15% Similarity=0.226 Sum_probs=26.6
Q ss_pred ECCCCHHHHHHHHHHhhhCCcccCC-----CcEEEEEee
Q psy14514 45 DLSANHNDFLAQLDMLRKGGWITRA-----TRVVFIDFS 78 (91)
Q Consensus 45 ~L~~~~~~a~~~L~~L~~~~WiD~~-----TRAvfvEFt 78 (91)
.++-++......++.|.+.+||.+. -|.+.+..|
T Consensus 60 ~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT 98 (143)
T 3oop_A 60 WTKKDTPTVNRIVDVLLRKELIVREISTEDRRISLLSLT 98 (143)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEEEEC----CCSCEEEEC
T ss_pred HHCCCHhhHHHHHHHHHHCCCeeccCCCccCceeeeeEC
Confidence 4677889999999999999999763 355666554
No 12
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=44.16 E-value=25 Score=21.35 Aligned_cols=34 Identities=29% Similarity=0.493 Sum_probs=26.5
Q ss_pred ECCCCHHHHHHHHHHhhhCCcccC-----CCcEEEEEee
Q psy14514 45 DLSANHNDFLAQLDMLRKGGWITR-----ATRVVFIDFS 78 (91)
Q Consensus 45 ~L~~~~~~a~~~L~~L~~~~WiD~-----~TRAvfvEFt 78 (91)
.++-++......++.|.+.+||.+ .-|.+.+..|
T Consensus 57 ~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT 95 (138)
T 1jgs_A 57 VLSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLT 95 (138)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEEC
T ss_pred HHCCChHHHHHHHHHHHHCCCEEecCCcccCceeEeEEC
Confidence 467788899999999999999976 3456666554
No 13
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=43.70 E-value=23 Score=22.45 Aligned_cols=34 Identities=15% Similarity=0.092 Sum_probs=27.1
Q ss_pred ECCCCHHHHHHHHHHhhhCCcccCC-----CcEEEEEee
Q psy14514 45 DLSANHNDFLAQLDMLRKGGWITRA-----TRVVFIDFS 78 (91)
Q Consensus 45 ~L~~~~~~a~~~L~~L~~~~WiD~~-----TRAvfvEFt 78 (91)
.++-++......|+.|.+.+||.+. -|.+.+..|
T Consensus 76 ~l~~~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT 114 (161)
T 3e6m_A 76 LGVMEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLT 114 (161)
T ss_dssp HTTCCHHHHHHHHHHHHHTTSEEECC---CCCSCEEEEC
T ss_pred HHCCCHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeEC
Confidence 4678889999999999999999874 355666554
No 14
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=43.52 E-value=23 Score=23.26 Aligned_cols=30 Identities=20% Similarity=0.385 Sum_probs=23.9
Q ss_pred CCCCHHHHHHHHHHhhhCCcccCC-CcEEEE
Q psy14514 46 LSANHNDFLAQLDMLRKGGWITRA-TRVVFI 75 (91)
Q Consensus 46 L~~~~~~a~~~L~~L~~~~WiD~~-TRAvfv 75 (91)
||-+++...++++.|++.++|... -+.+.|
T Consensus 177 lg~sr~tvsR~l~~l~~~g~I~~~~~~~i~i 207 (220)
T 2fmy_A 177 LGTTRQTVSVLLNDFKKMGILERVNQRTLLL 207 (220)
T ss_dssp HTSCHHHHHHHHHHHHHTTSEEESSSSEEEE
T ss_pred hCCcHHHHHHHHHHHHHCCCEEEcCCCEEEE
Confidence 566677888899999999999986 665544
No 15
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=43.36 E-value=19 Score=22.00 Aligned_cols=34 Identities=24% Similarity=0.158 Sum_probs=26.8
Q ss_pred ECCCCHHHHHHHHHHhhhCCcccCC-----CcEEEEEee
Q psy14514 45 DLSANHNDFLAQLDMLRKGGWITRA-----TRVVFIDFS 78 (91)
Q Consensus 45 ~L~~~~~~a~~~L~~L~~~~WiD~~-----TRAvfvEFt 78 (91)
.++-++......++.|.+.+||.+. -|.+.+..|
T Consensus 56 ~l~~~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT 94 (139)
T 3eco_A 56 ALQRTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLT 94 (139)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEEC
T ss_pred HhCCCcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEEC
Confidence 5678889999999999999999864 456666654
No 16
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=42.67 E-value=19 Score=23.25 Aligned_cols=30 Identities=13% Similarity=0.254 Sum_probs=24.8
Q ss_pred CCCCHHHHHHHHHHhhhCCcccCCCcEEEE
Q psy14514 46 LSANHNDFLAQLDMLRKGGWITRATRVVFI 75 (91)
Q Consensus 46 L~~~~~~a~~~L~~L~~~~WiD~~TRAvfv 75 (91)
||-+++...++|+.|++.++|+..-+-+.|
T Consensus 177 lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i 206 (210)
T 3ryp_A 177 VGCSRETVGRILKMLEDQNLISAHGKTIVV 206 (210)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred hCCcHHHHHHHHHHHHHCCcEEeCCCEEEE
Confidence 667778889999999999999987665544
No 17
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=42.32 E-value=21 Score=21.65 Aligned_cols=34 Identities=24% Similarity=0.395 Sum_probs=26.4
Q ss_pred ECCCCHHHHHHHHHHhhhCCcccCC-----CcEEEEEee
Q psy14514 45 DLSANHNDFLAQLDMLRKGGWITRA-----TRVVFIDFS 78 (91)
Q Consensus 45 ~L~~~~~~a~~~L~~L~~~~WiD~~-----TRAvfvEFt 78 (91)
.++-++......++.|.+.+||.+. -|.+.+..|
T Consensus 54 ~l~is~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT 92 (142)
T 3bdd_A 54 RLQIDRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPT 92 (142)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEEC
T ss_pred HHCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEEC
Confidence 3577888999999999999999774 456666544
No 18
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=41.83 E-value=34 Score=21.39 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=26.6
Q ss_pred ECCCCHHHHHHHHHHhhhCCcccCC-----CcEEEEEee
Q psy14514 45 DLSANHNDFLAQLDMLRKGGWITRA-----TRVVFIDFS 78 (91)
Q Consensus 45 ~L~~~~~~a~~~L~~L~~~~WiD~~-----TRAvfvEFt 78 (91)
.++-++......|+.|.+.+||.+. -|.+.+..|
T Consensus 67 ~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT 105 (154)
T 2eth_A 67 FLSTTKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLT 105 (154)
T ss_dssp HTTSCHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEEC
T ss_pred HHCCCHHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEEC
Confidence 4677888999999999999999763 456666554
No 19
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=41.74 E-value=21 Score=22.01 Aligned_cols=34 Identities=26% Similarity=0.356 Sum_probs=25.7
Q ss_pred ECCCCHHHHHHHHHHhhhCCcccCC-----CcEEEEEee
Q psy14514 45 DLSANHNDFLAQLDMLRKGGWITRA-----TRVVFIDFS 78 (91)
Q Consensus 45 ~L~~~~~~a~~~L~~L~~~~WiD~~-----TRAvfvEFt 78 (91)
.++-++......++.|.+.+||.+. -|.+.+..|
T Consensus 59 ~l~i~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT 97 (147)
T 2hr3_A 59 AERMRSSNLAALLRELERGGLIVRHADPQDGRRTRVSLS 97 (147)
T ss_dssp HTTCCHHHHHHHHHHHHHTTSEEEEC------CCEEEEC
T ss_pred HhCCChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEEC
Confidence 5678889999999999999999764 355555544
No 20
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=41.73 E-value=25 Score=23.70 Aligned_cols=30 Identities=10% Similarity=0.231 Sum_probs=24.0
Q ss_pred CCCCHHHHHHHHHHhhhCCcccCCCcEEEE
Q psy14514 46 LSANHNDFLAQLDMLRKGGWITRATRVVFI 75 (91)
Q Consensus 46 L~~~~~~a~~~L~~L~~~~WiD~~TRAvfv 75 (91)
||-+++...++|+.|++.++|+..-+-+.|
T Consensus 187 lG~sr~tvsR~l~~L~~~g~I~~~~~~i~i 216 (250)
T 3e6c_C 187 TGVHHVTVSRVLASLKRENILDKKKNKIIV 216 (250)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEECSSEEEE
T ss_pred hCCcHHHHHHHHHHHHHCCCeEeCCCEEEE
Confidence 455667778899999999999987776554
No 21
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=41.64 E-value=19 Score=23.53 Aligned_cols=31 Identities=26% Similarity=0.269 Sum_probs=25.6
Q ss_pred ECCCCHHHHHHHHHHhhhCCcccCCCcEEEE
Q psy14514 45 DLSANHNDFLAQLDMLRKGGWITRATRVVFI 75 (91)
Q Consensus 45 ~L~~~~~~a~~~L~~L~~~~WiD~~TRAvfv 75 (91)
.||-+++...++++.|++.++|+..-+-+.|
T Consensus 187 ~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i 217 (227)
T 3dkw_A 187 HLSIQPETFSRIMHRLGDEGIIHLDGREISI 217 (227)
T ss_dssp HTTSCHHHHHHHHHHHHHHTSEEESSSCEEE
T ss_pred HhCCCHHHHHHHHHHHHHCCcEEecCCEEEE
Confidence 3677888889999999999999987665544
No 22
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=41.58 E-value=15 Score=22.59 Aligned_cols=33 Identities=21% Similarity=0.409 Sum_probs=23.4
Q ss_pred ECCCCHHHHHHHHHHhhhCCcccCCC-----cEEEEEe
Q psy14514 45 DLSANHNDFLAQLDMLRKGGWITRAT-----RVVFIDF 77 (91)
Q Consensus 45 ~L~~~~~~a~~~L~~L~~~~WiD~~T-----RAvfvEF 77 (91)
.++-++......|+.|.+.+||.+.. |.+.+..
T Consensus 60 ~l~~s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~l 97 (146)
T 3tgn_A 60 RLNVSQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQL 97 (146)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEEC----------CCEE
T ss_pred HHCCCHHHHHHHHHHHHHCCCeEeccCCCCCceeEEEE
Confidence 56788899999999999999997743 5555444
No 23
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=41.44 E-value=29 Score=21.25 Aligned_cols=34 Identities=15% Similarity=0.221 Sum_probs=26.9
Q ss_pred ECCCCHHHHHHHHHHhhhCCcccCC-----CcEEEEEee
Q psy14514 45 DLSANHNDFLAQLDMLRKGGWITRA-----TRVVFIDFS 78 (91)
Q Consensus 45 ~L~~~~~~a~~~L~~L~~~~WiD~~-----TRAvfvEFt 78 (91)
.++-++......++.|.+.+||.+. -|.+.+..|
T Consensus 52 ~l~~s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT 90 (144)
T 1lj9_A 52 LIKVDRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYAT 90 (144)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEEC
T ss_pred HHCCCHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEC
Confidence 5677888999999999999999773 466666554
No 24
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=41.29 E-value=32 Score=21.44 Aligned_cols=38 Identities=5% Similarity=0.066 Sum_probs=28.8
Q ss_pred CeEEECCCCHHHHHHHHHHhhhCCcccCCCcEEEEEee
Q psy14514 41 GFYQDLSANHNDFLAQLDMLRKGGWITRATRVVFIDFS 78 (91)
Q Consensus 41 GYv~~L~~~~~~a~~~L~~L~~~~WiD~~TRAvfvEFt 78 (91)
||.+--=.+.++|.+.++.|....-.+...|.+.|+|+
T Consensus 137 g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 137 GCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred EEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEec
Confidence 44433335678999999999988877777888888874
No 25
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=41.06 E-value=20 Score=22.70 Aligned_cols=34 Identities=15% Similarity=0.207 Sum_probs=26.4
Q ss_pred ECCCCHHHHHHHHHHhhhCCcccCC-----CcEEEEEee
Q psy14514 45 DLSANHNDFLAQLDMLRKGGWITRA-----TRVVFIDFS 78 (91)
Q Consensus 45 ~L~~~~~~a~~~L~~L~~~~WiD~~-----TRAvfvEFt 78 (91)
.++-++......++.|.+.+||.+. -|++.+..|
T Consensus 73 ~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT 111 (159)
T 3s2w_A 73 YLKIDKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLT 111 (159)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEEEEECC---CCEEEEEC
T ss_pred HHCCCHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEEC
Confidence 5677889999999999999999763 256666554
No 26
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=40.95 E-value=43 Score=19.58 Aligned_cols=39 Identities=10% Similarity=0.000 Sum_probs=30.3
Q ss_pred CeEEECCCCHHHHHHHHHHhhhCCcccCCCcEEEEEeee
Q psy14514 41 GFYQDLSANHNDFLAQLDMLRKGGWITRATRVVFIDFSM 79 (91)
Q Consensus 41 GYv~~L~~~~~~a~~~L~~L~~~~WiD~~TRAvfvEFtl 79 (91)
||.+---.+.++|.+.++.|.....++..-|.+-|++.-
T Consensus 56 g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 94 (106)
T 2dgp_A 56 GCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPAD 94 (106)
T ss_dssp SEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECC
T ss_pred eEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECC
Confidence 665544467889999999999888887777778888753
No 27
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=40.65 E-value=22 Score=23.09 Aligned_cols=30 Identities=13% Similarity=0.141 Sum_probs=24.8
Q ss_pred CCCCHHHHHHHHHHhhhCCcccCCCcEEEE
Q psy14514 46 LSANHNDFLAQLDMLRKGGWITRATRVVFI 75 (91)
Q Consensus 46 L~~~~~~a~~~L~~L~~~~WiD~~TRAvfv 75 (91)
||-+++...++++.|++.++|+..-+-+.|
T Consensus 173 lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i 202 (216)
T 4ev0_A 173 AGTSRETVSRVLHALAEEGVVRLGPGTVEV 202 (216)
T ss_dssp HTSCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred hCCCHHHHHHHHHHHHHCCCEEecCCEEEE
Confidence 677888889999999999999886665543
No 28
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=40.36 E-value=20 Score=22.38 Aligned_cols=34 Identities=26% Similarity=0.408 Sum_probs=25.5
Q ss_pred ECCCCHHHHHHHHHHhhhCCcccCCC-----cEEEEEee
Q psy14514 45 DLSANHNDFLAQLDMLRKGGWITRAT-----RVVFIDFS 78 (91)
Q Consensus 45 ~L~~~~~~a~~~L~~L~~~~WiD~~T-----RAvfvEFt 78 (91)
.++-++......|+.|.+.++|.+.. |.+.+..|
T Consensus 70 ~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT 108 (153)
T 2pex_A 70 RLYLDSATLTPLLKRLQAAGLVTRTRAASDERQVIIALT 108 (153)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEEC
T ss_pred HhCCCcccHHHHHHHHHHCCCEeecCCcccCCeeEeeEC
Confidence 46778889999999999999998743 56666554
No 29
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=40.19 E-value=24 Score=23.29 Aligned_cols=30 Identities=17% Similarity=0.156 Sum_probs=25.1
Q ss_pred CCCCHHHHHHHHHHhhhCCcccCCCcEEEE
Q psy14514 46 LSANHNDFLAQLDMLRKGGWITRATRVVFI 75 (91)
Q Consensus 46 L~~~~~~a~~~L~~L~~~~WiD~~TRAvfv 75 (91)
||-+++...++|+.|++.++|+..-+-+.|
T Consensus 185 lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i 214 (231)
T 3e97_A 185 TSSSRETVSRVLKRLEAHNILEVSPRSVTL 214 (231)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEECSSCEEE
T ss_pred hCCcHHHHHHHHHHHHHCCcEEecCCEEEE
Confidence 677888889999999999999987665544
No 30
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=39.40 E-value=25 Score=21.63 Aligned_cols=34 Identities=21% Similarity=0.415 Sum_probs=27.0
Q ss_pred ECCCCHHHHHHHHHHhhhCCcccCC-----CcEEEEEee
Q psy14514 45 DLSANHNDFLAQLDMLRKGGWITRA-----TRVVFIDFS 78 (91)
Q Consensus 45 ~L~~~~~~a~~~L~~L~~~~WiD~~-----TRAvfvEFt 78 (91)
.++-++......++.|.+.+||.+. -|.+.+..|
T Consensus 59 ~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT 97 (144)
T 3f3x_A 59 RYFVTQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEIT 97 (144)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEEC
T ss_pred HHCCChhHHHHHHHHHHHCCCEEeccCCCCCceEEEEEC
Confidence 4677888999999999999999874 366666654
No 31
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=39.13 E-value=25 Score=22.70 Aligned_cols=34 Identities=26% Similarity=0.440 Sum_probs=25.9
Q ss_pred ECCCCHHHHHHHHHHhhhCCcccCCC-----cEEEEEee
Q psy14514 45 DLSANHNDFLAQLDMLRKGGWITRAT-----RVVFIDFS 78 (91)
Q Consensus 45 ~L~~~~~~a~~~L~~L~~~~WiD~~T-----RAvfvEFt 78 (91)
.++-++......|+.|.+.+||.+.. |.+.+..|
T Consensus 77 ~l~i~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT 115 (166)
T 3deu_A 77 AIGIEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLT 115 (166)
T ss_dssp HHTSCHHHHHHHHHHHHHTTSEEEC--------CEEEEC
T ss_pred HHCCCHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEEC
Confidence 46788899999999999999998753 56666654
No 32
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=38.75 E-value=41 Score=19.66 Aligned_cols=33 Identities=9% Similarity=0.199 Sum_probs=25.4
Q ss_pred CCCCHHHHHHHHHHhhhCCcccCC--CcEEEEEee
Q psy14514 46 LSANHNDFLAQLDMLRKGGWITRA--TRVVFIDFS 78 (91)
Q Consensus 46 L~~~~~~a~~~L~~L~~~~WiD~~--TRAvfvEFt 78 (91)
++-++......|+.|.+.+||.+. .|...+..|
T Consensus 36 l~is~~tvs~~l~~Le~~gli~r~~~~r~~~~~LT 70 (99)
T 1tbx_A 36 FPMSTATFYDAKKFLIQEGFVKERQERGEKRLYLT 70 (99)
T ss_dssp SCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEC
T ss_pred cCCCHHHHHHHHHHHHHCCCEEEEecCCceEEEEC
Confidence 577888999999999999999872 255555443
No 33
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=38.56 E-value=29 Score=23.74 Aligned_cols=30 Identities=13% Similarity=0.254 Sum_probs=25.1
Q ss_pred CCCCHHHHHHHHHHhhhCCcccCCCcEEEE
Q psy14514 46 LSANHNDFLAQLDMLRKGGWITRATRVVFI 75 (91)
Q Consensus 46 L~~~~~~a~~~L~~L~~~~WiD~~TRAvfv 75 (91)
||-+++...++|+.|++.++|+..-+-+.|
T Consensus 227 lG~sr~tvsR~l~~L~~~GlI~~~~~~i~I 256 (260)
T 3kcc_A 227 VGCSRETVGRILKMLEDQNLISAHGKTIVV 256 (260)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEECSSEEEE
T ss_pred hCCCHHHHHHHHHHHHHCCCEEEcCCEEEE
Confidence 667778889999999999999987776554
No 34
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=38.38 E-value=36 Score=19.89 Aligned_cols=39 Identities=15% Similarity=0.169 Sum_probs=29.4
Q ss_pred CeEEECCCCHHHHHHHHHHhhhCCcccCCCcEEEEEeee
Q psy14514 41 GFYQDLSANHNDFLAQLDMLRKGGWITRATRVVFIDFSM 79 (91)
Q Consensus 41 GYv~~L~~~~~~a~~~L~~L~~~~WiD~~TRAvfvEFtl 79 (91)
||.+---.+.++|.+.++.|....+.+...|.+.|+++-
T Consensus 57 g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~ 95 (105)
T 2dnh_A 57 GCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFAD 95 (105)
T ss_dssp EEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESC
T ss_pred cEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECc
Confidence 565444467889999999998888877666778888764
No 35
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=38.23 E-value=24 Score=23.08 Aligned_cols=30 Identities=13% Similarity=0.187 Sum_probs=24.7
Q ss_pred CCCCHHHHHHHHHHhhhCCcccCCCcEEEE
Q psy14514 46 LSANHNDFLAQLDMLRKGGWITRATRVVFI 75 (91)
Q Consensus 46 L~~~~~~a~~~L~~L~~~~WiD~~TRAvfv 75 (91)
||-+++.-.++|+.|++.++|+..-+-+.|
T Consensus 197 lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i 226 (230)
T 3iwz_A 197 VGCSREMAGRVLKKLQADGLLHARGKTVVL 226 (230)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred hCCcHHHHHHHHHHHHHCCCEEECCCEEEE
Confidence 566778888999999999999987665544
No 36
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=37.90 E-value=25 Score=23.11 Aligned_cols=30 Identities=23% Similarity=0.419 Sum_probs=23.8
Q ss_pred CCCCHHHHHHHHHHhhhCCcccCCCcEEEE
Q psy14514 46 LSANHNDFLAQLDMLRKGGWITRATRVVFI 75 (91)
Q Consensus 46 L~~~~~~a~~~L~~L~~~~WiD~~TRAvfv 75 (91)
||-+++...++|+.|++.++|+..-+.+.|
T Consensus 187 lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i 216 (227)
T 3d0s_A 187 VGASRETVNKALADFAHRGWIRLEGKSVLI 216 (227)
T ss_dssp HTSCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred hCCcHHHHHHHHHHHHHCCCEEecCCEEEE
Confidence 566677788899999999999986665543
No 37
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=37.77 E-value=18 Score=22.37 Aligned_cols=25 Identities=12% Similarity=0.122 Sum_probs=21.7
Q ss_pred ECCCCHHHHHHHHHHhhhCCcccCC
Q psy14514 45 DLSANHNDFLAQLDMLRKGGWITRA 69 (91)
Q Consensus 45 ~L~~~~~~a~~~L~~L~~~~WiD~~ 69 (91)
.++-++......++.|.+.+||.+.
T Consensus 63 ~l~~~~~tvs~~l~~Le~~Glv~r~ 87 (148)
T 3nrv_A 63 ILGLDKAAVSRTVKKLEEKKYIEVN 87 (148)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEEC-
T ss_pred HHCCCHHHHHHHHHHHHHCCCEEee
Confidence 4778889999999999999999876
No 38
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=37.70 E-value=24 Score=20.27 Aligned_cols=27 Identities=4% Similarity=-0.064 Sum_probs=20.2
Q ss_pred CCCCeEEECC--CCHHHHHHHHHHhhhCC
Q psy14514 38 PYSGFYQDLS--ANHNDFLAQLDMLRKGG 64 (91)
Q Consensus 38 ~gGGYv~~L~--~~~~~a~~~L~~L~~~~ 64 (91)
++|+|.+.+| .++++|.+..+.|+..+
T Consensus 6 ~~~~~~vQvGaf~~~~~A~~~~~~L~~~g 34 (79)
T 1x60_A 6 SSGLYKVQIGAFKVKANADSLASNAEAKG 34 (79)
T ss_dssp CCCEEEEEEEEESCHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEEEcCCHHHHHHHHHHHHhCC
Confidence 4577887776 56788888888888764
No 39
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=37.60 E-value=21 Score=21.79 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=26.6
Q ss_pred ECCCCHHHHHHHHHHhhhCCcccCC-----CcEEEEEee
Q psy14514 45 DLSANHNDFLAQLDMLRKGGWITRA-----TRVVFIDFS 78 (91)
Q Consensus 45 ~L~~~~~~a~~~L~~L~~~~WiD~~-----TRAvfvEFt 78 (91)
.++-++......++.|.+.+||.+. -|.+.+..|
T Consensus 61 ~l~~s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT 99 (146)
T 2fbh_A 61 SVGVEGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLT 99 (146)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEEC
T ss_pred HhCCChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEEC
Confidence 4678889999999999999999774 355555544
No 40
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=37.43 E-value=31 Score=21.23 Aligned_cols=34 Identities=21% Similarity=0.308 Sum_probs=25.6
Q ss_pred ECCCCHHHHHHHHHHhhhCCcccCC-----CcEEEEEee
Q psy14514 45 DLSANHNDFLAQLDMLRKGGWITRA-----TRVVFIDFS 78 (91)
Q Consensus 45 ~L~~~~~~a~~~L~~L~~~~WiD~~-----TRAvfvEFt 78 (91)
.++-++......|+.|.+.++|.+. -|.+.+..|
T Consensus 65 ~l~~~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT 103 (150)
T 2rdp_A 65 KMYLACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLL 103 (150)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEEEEECCC---CEEEEEC
T ss_pred HHCCCchhHHHHHHHHHHCCCeeecCCCCCcceeEeEEC
Confidence 4677888999999999999999763 456666554
No 41
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=37.09 E-value=26 Score=22.74 Aligned_cols=30 Identities=13% Similarity=0.201 Sum_probs=24.4
Q ss_pred CCCCHHHHHHHHHHhhhCCcccCCCcEEEE
Q psy14514 46 LSANHNDFLAQLDMLRKGGWITRATRVVFI 75 (91)
Q Consensus 46 L~~~~~~a~~~L~~L~~~~WiD~~TRAvfv 75 (91)
||-+++...++++.|++.++|+..-+-+.|
T Consensus 179 lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i 208 (220)
T 3dv8_A 179 LGSHREVITRMLRYFQVEGLVKLSRGKITI 208 (220)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred hCCCHHHHHHHHHHHHHCCCEEeCCCEEEE
Confidence 677888889999999999999876555443
No 42
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=36.98 E-value=26 Score=22.66 Aligned_cols=30 Identities=10% Similarity=0.215 Sum_probs=23.9
Q ss_pred CCCCHHHHHHHHHHhhhCCcccCCCcEEEE
Q psy14514 46 LSANHNDFLAQLDMLRKGGWITRATRVVFI 75 (91)
Q Consensus 46 L~~~~~~a~~~L~~L~~~~WiD~~TRAvfv 75 (91)
||-+++...++|+.|++.++|...-+-+.|
T Consensus 156 lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i 185 (202)
T 2zcw_A 156 VGSVRETVTKVIGELAREGYIRSGYGKIQL 185 (202)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred hCCCHHHHHHHHHHHHHCCCEEeCCCEEEE
Confidence 566778888999999999999976555543
No 43
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=36.85 E-value=30 Score=21.24 Aligned_cols=34 Identities=26% Similarity=0.436 Sum_probs=26.9
Q ss_pred ECCCCHHHHHHHHHHhhhCCcccCC-----CcEEEEEee
Q psy14514 45 DLSANHNDFLAQLDMLRKGGWITRA-----TRVVFIDFS 78 (91)
Q Consensus 45 ~L~~~~~~a~~~L~~L~~~~WiD~~-----TRAvfvEFt 78 (91)
.++-++......++.|.+.+||.+. -|.+.+..|
T Consensus 63 ~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT 101 (147)
T 1z91_A 63 QLYLDSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLT 101 (147)
T ss_dssp TTTCCHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEEC
T ss_pred HHCCCcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEEC
Confidence 4678889999999999999999874 356666554
No 44
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=36.65 E-value=39 Score=20.45 Aligned_cols=34 Identities=24% Similarity=0.226 Sum_probs=26.6
Q ss_pred EC-CCCHHHHHHHHHHhhhCCcccCCC-----cEEEEEee
Q psy14514 45 DL-SANHNDFLAQLDMLRKGGWITRAT-----RVVFIDFS 78 (91)
Q Consensus 45 ~L-~~~~~~a~~~L~~L~~~~WiD~~T-----RAvfvEFt 78 (91)
.+ +-++......|+.|++.++|.+.. |.+.+..|
T Consensus 36 ~l~~is~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT 75 (107)
T 2hzt_A 36 LMPNITQKMLTQQLRELEADGVINRIVYNQVPPKVEYELS 75 (107)
T ss_dssp HCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEEC
T ss_pred HhcCCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEEC
Confidence 35 778888999999999999998753 55666554
No 45
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=36.59 E-value=24 Score=22.77 Aligned_cols=30 Identities=27% Similarity=0.360 Sum_probs=24.0
Q ss_pred CCCCHHHHHHHHHHhhhCCcccCCCcEEEE
Q psy14514 46 LSANHNDFLAQLDMLRKGGWITRATRVVFI 75 (91)
Q Consensus 46 L~~~~~~a~~~L~~L~~~~WiD~~TRAvfv 75 (91)
||-+++.-.++|+.|++.++|+..-+-+.|
T Consensus 149 lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i 178 (195)
T 3b02_A 149 TASIRESVSKVLADLRREGLIATAYRRVYL 178 (195)
T ss_dssp TTSCHHHHHHHHHHHHHHTSEEEETTEEEE
T ss_pred hCCCHHHHHHHHHHHHHCCCEEecCCEEEE
Confidence 566778888999999999999986665443
No 46
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=36.47 E-value=23 Score=22.16 Aligned_cols=34 Identities=26% Similarity=0.585 Sum_probs=25.3
Q ss_pred ECCCCHHHHHHHHHHhhhCCcccCC-----CcEEEEEee
Q psy14514 45 DLSANHNDFLAQLDMLRKGGWITRA-----TRVVFIDFS 78 (91)
Q Consensus 45 ~L~~~~~~a~~~L~~L~~~~WiD~~-----TRAvfvEFt 78 (91)
.++-++......++.|.+.+||.+. -|++.+..|
T Consensus 64 ~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT 102 (149)
T 4hbl_A 64 HLDLSSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLT 102 (149)
T ss_dssp HHTCCHHHHHHHHHHHHHHTSEEC---------CEEEEC
T ss_pred HHCCCHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeEC
Confidence 4677889999999999999999875 366666654
No 47
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=36.36 E-value=33 Score=22.55 Aligned_cols=30 Identities=7% Similarity=0.059 Sum_probs=24.8
Q ss_pred CCCCHHHHHHHHHHhhhCCcccCCCcEEEE
Q psy14514 46 LSANHNDFLAQLDMLRKGGWITRATRVVFI 75 (91)
Q Consensus 46 L~~~~~~a~~~L~~L~~~~WiD~~TRAvfv 75 (91)
||-+++...++|+.|++.++|...-+-+.|
T Consensus 190 lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i 219 (232)
T 2gau_A 190 SNMTVSNAIRTLSTFVSERMLALDGKRIKI 219 (232)
T ss_dssp TTSCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred hCCCHHHHHHHHHHHHHCCCEeeCCCEEEE
Confidence 678888889999999999999986665443
No 48
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=36.02 E-value=26 Score=22.49 Aligned_cols=34 Identities=26% Similarity=0.425 Sum_probs=27.5
Q ss_pred ECCCCHHHHHHHHHHhhhCCcccCC-----CcEEEEEee
Q psy14514 45 DLSANHNDFLAQLDMLRKGGWITRA-----TRVVFIDFS 78 (91)
Q Consensus 45 ~L~~~~~~a~~~L~~L~~~~WiD~~-----TRAvfvEFt 78 (91)
.++-++......++.|.+.+||.+. -|++.|..|
T Consensus 55 ~l~~~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT 93 (151)
T 4aik_A 55 AIGIEQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLT 93 (151)
T ss_dssp HHTSCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEEC
T ss_pred HHCcCHHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcC
Confidence 4678889999999999999999753 467777655
No 49
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=35.79 E-value=24 Score=21.86 Aligned_cols=34 Identities=18% Similarity=0.187 Sum_probs=26.2
Q ss_pred ECCCCHHHHHHHHHHhhhCCcccCC-----CcEEEEEee
Q psy14514 45 DLSANHNDFLAQLDMLRKGGWITRA-----TRVVFIDFS 78 (91)
Q Consensus 45 ~L~~~~~~a~~~L~~L~~~~WiD~~-----TRAvfvEFt 78 (91)
.++-++......|+.|.+.+||.+. -|.+.+..|
T Consensus 63 ~l~~~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT 101 (152)
T 3bj6_A 63 ALQMKRQYISRILQEVQRAGLIERRTNPEHARSHRYWLT 101 (152)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEEC
T ss_pred HHCCCHHHHHHHHHHHHHCCCeeecCCcccccceeeEEC
Confidence 4677889999999999999999763 455555543
No 50
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=35.67 E-value=32 Score=20.78 Aligned_cols=34 Identities=18% Similarity=0.355 Sum_probs=26.6
Q ss_pred ECCCCHHHHHHHHHHhhhCCcccCC-----CcEEEEEee
Q psy14514 45 DLSANHNDFLAQLDMLRKGGWITRA-----TRVVFIDFS 78 (91)
Q Consensus 45 ~L~~~~~~a~~~L~~L~~~~WiD~~-----TRAvfvEFt 78 (91)
.++-++......++.|.+.++|.+. -|.+.+..|
T Consensus 52 ~l~~s~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT 90 (138)
T 3bpv_A 52 FFHVDKGTIARTLRRLEESGFIEREQDPENRRRYILEVT 90 (138)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEEC
T ss_pred HHCCCHHHHHHHHHHHHHCCCEEeecCCCCceeEEeeEC
Confidence 4577888999999999999999873 456666554
No 51
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=35.59 E-value=39 Score=21.62 Aligned_cols=34 Identities=18% Similarity=0.134 Sum_probs=26.9
Q ss_pred ECCCCHHHHHHHHHHhhhCCcccCC-----CcEEEEEee
Q psy14514 45 DLSANHNDFLAQLDMLRKGGWITRA-----TRVVFIDFS 78 (91)
Q Consensus 45 ~L~~~~~~a~~~L~~L~~~~WiD~~-----TRAvfvEFt 78 (91)
.++-++......++.|.+.+||.+. -|.+.+..|
T Consensus 68 ~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT 106 (168)
T 2nyx_A 68 LLGVQPSATGRMVDRLVGAELIDRLPHPTSRRELLAALT 106 (168)
T ss_dssp HHTSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEEC
T ss_pred HhCCCHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEEC
Confidence 4677888999999999999999762 466666554
No 52
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=34.97 E-value=38 Score=21.21 Aligned_cols=34 Identities=18% Similarity=0.221 Sum_probs=26.2
Q ss_pred ECCCCHHHHHHHHHHhhhCCcccC-----CCcEEEEEee
Q psy14514 45 DLSANHNDFLAQLDMLRKGGWITR-----ATRVVFIDFS 78 (91)
Q Consensus 45 ~L~~~~~~a~~~L~~L~~~~WiD~-----~TRAvfvEFt 78 (91)
.++-++......|+.|.+.++|.+ .-|.+.+..|
T Consensus 75 ~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT 113 (162)
T 3cjn_A 75 FAVVEQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLT 113 (162)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEEC
T ss_pred HHCCChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEEC
Confidence 467788899999999999999976 3455555544
No 53
>1c4q_A Protein (shiga-like toxin I subunit B); receptor binding, protein-carbohydrate recognition, OB-fold; HET: GLA GAL BGC; 1.52A {Escherichia coli} SCOP: b.40.2.1 PDB: 1d1i_A* 1czw_A* 1d1k_A* 2xsc_A 1bos_A 1dm0_B 1qnu_A* 1r4q_B 2c5c_A* 1bov_A 4ull_A 1c48_A 1cqf_A* 1czg_A
Probab=34.45 E-value=24 Score=21.24 Aligned_cols=15 Identities=20% Similarity=0.638 Sum_probs=11.4
Q ss_pred EEEeeeeecCCceEEE
Q psy14514 74 FIDFSMYNANVNLFCF 89 (91)
Q Consensus 74 fvEFtlYN~n~nLF~v 89 (91)
-|||+-||.+ |.|+|
T Consensus 8 kiefskyne~-~tftv 22 (69)
T 1c4q_A 8 KVEYTKYNDD-DTFTV 22 (69)
T ss_dssp EEEEEEECTT-SCEEE
T ss_pred eEEEEEecCC-ceEEE
Confidence 4899999986 55654
No 54
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=34.38 E-value=24 Score=20.77 Aligned_cols=34 Identities=18% Similarity=0.327 Sum_probs=25.1
Q ss_pred ECCCCHHH-HHHHHHHhhhCCcccCC---CcEEEEEee
Q psy14514 45 DLSANHND-FLAQLDMLRKGGWITRA---TRVVFIDFS 78 (91)
Q Consensus 45 ~L~~~~~~-a~~~L~~L~~~~WiD~~---TRAvfvEFt 78 (91)
.++-++.. ....++.|++.+||.+. -|.+.+..|
T Consensus 39 ~l~is~~t~vs~~l~~Le~~Glv~~~~~drR~~~~~LT 76 (95)
T 2pg4_A 39 ASGVSEKTFFMGLKDRLIRAGLVKEETLSYRVKTLKLT 76 (95)
T ss_dssp HHCCCHHHHHTTHHHHHHHTTSEEEEEEETTEEEEEEC
T ss_pred HHCCCchHHHHHHHHHHHHCCCeecCCCCCCeEEEEEC
Confidence 45667788 88999999999999721 166666654
No 55
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=34.15 E-value=22 Score=21.93 Aligned_cols=34 Identities=15% Similarity=0.154 Sum_probs=25.8
Q ss_pred ECCCCHHHHHHHHHHhhhCCcccCC-----CcEEEEEee
Q psy14514 45 DLSANHNDFLAQLDMLRKGGWITRA-----TRVVFIDFS 78 (91)
Q Consensus 45 ~L~~~~~~a~~~L~~L~~~~WiD~~-----TRAvfvEFt 78 (91)
.++-++......++.|.+.+||.+. -|.+.+..|
T Consensus 54 ~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT 92 (145)
T 3g3z_A 54 KWSLPKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLT 92 (145)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEEC
T ss_pred HHCCCHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEC
Confidence 4677888999999999999999863 255555443
No 56
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=34.06 E-value=35 Score=20.79 Aligned_cols=34 Identities=21% Similarity=0.377 Sum_probs=26.2
Q ss_pred ECCCCHHHHHHHHHHhhhCCcccCC-----CcEEEEEee
Q psy14514 45 DLSANHNDFLAQLDMLRKGGWITRA-----TRVVFIDFS 78 (91)
Q Consensus 45 ~L~~~~~~a~~~L~~L~~~~WiD~~-----TRAvfvEFt 78 (91)
.++-++......++.|.+.+||.+. -|...+..|
T Consensus 56 ~l~~s~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT 94 (145)
T 2a61_A 56 LLGVAKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVIT 94 (145)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEEC
T ss_pred HHCCCchhHHHHHHHHHHCCCeeecCCCCCCceEEEEEC
Confidence 4677888999999999999999874 355555543
No 57
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=33.64 E-value=23 Score=21.72 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=26.1
Q ss_pred ECCCCHHHHHHHHHHhhhCCcccCC-----CcEEEEEee
Q psy14514 45 DLSANHNDFLAQLDMLRKGGWITRA-----TRVVFIDFS 78 (91)
Q Consensus 45 ~L~~~~~~a~~~L~~L~~~~WiD~~-----TRAvfvEFt 78 (91)
.++-++......|+.|.+.+||.+. -|.+.+..|
T Consensus 60 ~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT 98 (142)
T 2bv6_A 60 ELALDTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLT 98 (142)
T ss_dssp HTTCCTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEEC
T ss_pred HHCCChhhHHHHHHHHHHCCCEEeecCCCCcceEEEEEC
Confidence 4567778888999999999999763 466666554
No 58
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=33.58 E-value=29 Score=21.59 Aligned_cols=34 Identities=18% Similarity=0.339 Sum_probs=23.2
Q ss_pred ECCCCHHHHHHHHHHhhhCCcccCCC-----cEEEEEee
Q psy14514 45 DLSANHNDFLAQLDMLRKGGWITRAT-----RVVFIDFS 78 (91)
Q Consensus 45 ~L~~~~~~a~~~L~~L~~~~WiD~~T-----RAvfvEFt 78 (91)
.++-++......++.|.+.+||.+.. |++.+..|
T Consensus 63 ~l~i~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT 101 (150)
T 3fm5_A 63 TMGLDPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAAT 101 (150)
T ss_dssp HHTCCHHHHHHHHHHHHTTTSEEC-----------CEEC
T ss_pred HHCCCHhHHHHHHHHHHHCCCEEeeCCccccchheeeEC
Confidence 46778889999999999999998743 45555443
No 59
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=32.87 E-value=35 Score=21.13 Aligned_cols=34 Identities=18% Similarity=0.288 Sum_probs=26.4
Q ss_pred ECCCCHHHHHHHHHHhhhCCcccCC-----CcEEEEEee
Q psy14514 45 DLSANHNDFLAQLDMLRKGGWITRA-----TRVVFIDFS 78 (91)
Q Consensus 45 ~L~~~~~~a~~~L~~L~~~~WiD~~-----TRAvfvEFt 78 (91)
.++-++......|+.|.+.+||.+. -|.+.+..|
T Consensus 60 ~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT 98 (155)
T 1s3j_A 60 RMEVKPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLT 98 (155)
T ss_dssp HHTSCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEEC
T ss_pred HHCCCHHHHHHHHHHHHHCCCEeecCCCCCCceEEEEEC
Confidence 4677888999999999999999763 455665554
No 60
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=32.74 E-value=29 Score=20.94 Aligned_cols=34 Identities=6% Similarity=0.369 Sum_probs=25.7
Q ss_pred ECCCCHHHHHHHHHHhhhCCcccCC-----CcEEEEEee
Q psy14514 45 DLSANHNDFLAQLDMLRKGGWITRA-----TRVVFIDFS 78 (91)
Q Consensus 45 ~L~~~~~~a~~~L~~L~~~~WiD~~-----TRAvfvEFt 78 (91)
.++-++......|+.|.+.+||.+. -|.+.+..|
T Consensus 56 ~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT 94 (139)
T 3bja_A 56 NMGCVPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLT 94 (139)
T ss_dssp HCSSCCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEEC
T ss_pred HHCCChhHHHHHHHHHHHCCCeeeccCCCCCceeEEEEC
Confidence 4667777888999999999999762 466666554
No 61
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=32.38 E-value=33 Score=23.04 Aligned_cols=30 Identities=13% Similarity=0.169 Sum_probs=24.0
Q ss_pred CCCCHHHHHHHHHHhhhCCcccCCCcEEEE
Q psy14514 46 LSANHNDFLAQLDMLRKGGWITRATRVVFI 75 (91)
Q Consensus 46 L~~~~~~a~~~L~~L~~~~WiD~~TRAvfv 75 (91)
||-+++...++|+.|++.++|+..-+-+.|
T Consensus 203 lG~sr~tvsR~l~~L~~~GlI~~~~~~i~I 232 (243)
T 3la7_A 203 IGSTRVTVTRLLGDLREKKMISIHKKKITV 232 (243)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred HCCcHHHHHHHHHHHHHCCCEEEcCCEEEE
Confidence 566678888999999999999986665544
No 62
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=32.30 E-value=36 Score=20.81 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=26.6
Q ss_pred EC-CCCHHHHHHHHHHhhhCCcccCCC-----cEEEEEee
Q psy14514 45 DL-SANHNDFLAQLDMLRKGGWITRAT-----RVVFIDFS 78 (91)
Q Consensus 45 ~L-~~~~~~a~~~L~~L~~~~WiD~~T-----RAvfvEFt 78 (91)
.| +-++......|+.|++.++|.+.. |.+.+..|
T Consensus 44 ~l~~is~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~~LT 83 (112)
T 1z7u_A 44 ALDGITQRVLTDRLREMEKDGLVHRESFNELPPRVEYTLT 83 (112)
T ss_dssp HSTTCCHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEEC
T ss_pred HhccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEEC
Confidence 46 778888999999999999998753 55665554
No 63
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=32.15 E-value=32 Score=21.82 Aligned_cols=34 Identities=15% Similarity=0.272 Sum_probs=26.4
Q ss_pred ECCCCHHHHHHHHHHhhhCCcccCC-----CcEEEEEee
Q psy14514 45 DLSANHNDFLAQLDMLRKGGWITRA-----TRVVFIDFS 78 (91)
Q Consensus 45 ~L~~~~~~a~~~L~~L~~~~WiD~~-----TRAvfvEFt 78 (91)
.++-++......++.|.+.+||.+. -|++.|..|
T Consensus 60 ~l~~~~~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT 98 (147)
T 4b8x_A 60 RLMVHPTSVTNTVDRLVRSGLVAKRPNPNDGRGTLATIT 98 (147)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEEEEECC----CEEEEEC
T ss_pred HHCCCHHHHHHHHHHHHhCCCEEEeecCCcCceeEEEEC
Confidence 4678889999999999999999763 366666655
No 64
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=32.01 E-value=35 Score=22.69 Aligned_cols=29 Identities=17% Similarity=0.302 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHHHHhhhCCcccCCCcEEE
Q psy14514 46 LSANHNDFLAQLDMLRKGGWITRATRVVF 74 (91)
Q Consensus 46 L~~~~~~a~~~L~~L~~~~WiD~~TRAvf 74 (91)
||-+++...++++.|++.++|...-+-+.
T Consensus 196 lG~sr~tvsR~l~~l~~~glI~~~~~~i~ 224 (232)
T 1zyb_A 196 LDDTRLNISKTLNELQDNGLIELHRKEIL 224 (232)
T ss_dssp HTSCHHHHHHHHHHHHHTTSCEEETTEEE
T ss_pred hCCChhHHHHHHHHHHHCCCEEecCCEEE
Confidence 56777888899999999999987655543
No 65
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=31.32 E-value=22 Score=22.58 Aligned_cols=34 Identities=21% Similarity=0.317 Sum_probs=26.2
Q ss_pred ECCCCHHHHHHHHHHhhhCCcccCC-----CcEEEEEee
Q psy14514 45 DLSANHNDFLAQLDMLRKGGWITRA-----TRVVFIDFS 78 (91)
Q Consensus 45 ~L~~~~~~a~~~L~~L~~~~WiD~~-----TRAvfvEFt 78 (91)
.++-++......++.|.+.+||.+. -|++.+..|
T Consensus 69 ~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT 107 (162)
T 3k0l_A 69 RSFIKPQSANKILQDLLANGWIEKAPDPTHGRRILVTVT 107 (162)
T ss_dssp HHTSCGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEEC
T ss_pred HHCCCHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEEC
Confidence 4567778888999999999999763 356666654
No 66
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=30.41 E-value=38 Score=20.96 Aligned_cols=24 Identities=21% Similarity=0.185 Sum_probs=21.1
Q ss_pred ECCCCHHHHHHHHHHhhhCCcccC
Q psy14514 45 DLSANHNDFLAQLDMLRKGGWITR 68 (91)
Q Consensus 45 ~L~~~~~~a~~~L~~L~~~~WiD~ 68 (91)
.++-++......++.|.+.+||.+
T Consensus 64 ~l~~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 64 RLIITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHCCCHHHHHHHHHHHHHCCCEEe
Confidence 456778899999999999999987
No 67
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=30.35 E-value=37 Score=22.68 Aligned_cols=30 Identities=10% Similarity=0.172 Sum_probs=23.4
Q ss_pred CCCCH-HHHHHHHHHhhhCCcccCCCcEEEE
Q psy14514 46 LSANH-NDFLAQLDMLRKGGWITRATRVVFI 75 (91)
Q Consensus 46 L~~~~-~~a~~~L~~L~~~~WiD~~TRAvfv 75 (91)
||-++ +...++|+.|++.++|+..-+-+.|
T Consensus 179 lG~sr~etvsR~l~~l~~~glI~~~~~~i~I 209 (238)
T 2bgc_A 179 SGIAHSSAVSRIISKLKQEKVIVYKNSCFYV 209 (238)
T ss_dssp TTCCCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred hCCChHHHHHHHHHHHHHCCCEEecCCEEEE
Confidence 56667 5788899999999999986665544
No 68
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=30.14 E-value=52 Score=21.64 Aligned_cols=34 Identities=12% Similarity=0.329 Sum_probs=26.8
Q ss_pred ECCCCHHHHHHHHHHhhhCCcccC-----CCcEEEEEee
Q psy14514 45 DLSANHNDFLAQLDMLRKGGWITR-----ATRVVFIDFS 78 (91)
Q Consensus 45 ~L~~~~~~a~~~L~~L~~~~WiD~-----~TRAvfvEFt 78 (91)
.++-++......|+.|.+.+||.+ .-|++.|..|
T Consensus 66 ~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT 104 (189)
T 3nqo_A 66 KMGTSKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVT 104 (189)
T ss_dssp HHTSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEEC
T ss_pred HHCCCHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEEC
Confidence 467788899999999999999976 3356666654
No 69
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=29.25 E-value=93 Score=18.53 Aligned_cols=36 Identities=22% Similarity=0.213 Sum_probs=25.3
Q ss_pred CeEEECCCCHHHHHHHHHHhhhCC---cccCCCcEEEEEee
Q psy14514 41 GFYQDLSANHNDFLAQLDMLRKGG---WITRATRVVFIDFS 78 (91)
Q Consensus 41 GYv~~L~~~~~~a~~~L~~L~~~~---WiD~~TRAvfvEFt 78 (91)
||.+--=.+.++|.+.++.|.... .|| -|.|.|+|+
T Consensus 54 G~aFV~f~~~~~A~~Ai~~lng~~~~~~i~--Gr~i~V~~A 92 (95)
T 2lkz_A 54 GFAFVQLSSAMDASQLLQILQSLHPPLKID--GKTIGVDFA 92 (95)
T ss_dssp SEEEEECSSSHHHHHHHHHHHSSSSCEEET--TEEEEEEEC
T ss_pred eEeEEEECCHHHHHHHHHHhcCCCCCceEC--CEEEEEEEc
Confidence 665433356788999999998765 455 477888875
No 70
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=28.93 E-value=29 Score=21.71 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=21.3
Q ss_pred ECCCCHHHHHHHHHHhhhCCcccCC
Q psy14514 45 DLSANHNDFLAQLDMLRKGGWITRA 69 (91)
Q Consensus 45 ~L~~~~~~a~~~L~~L~~~~WiD~~ 69 (91)
.++-++......|+.|.+.+||.+.
T Consensus 72 ~l~is~~tvs~~l~~Le~~glv~r~ 96 (162)
T 2fa5_A 72 RTAMDKVAVSRAVARLLERGFIRRE 96 (162)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEEC-
T ss_pred HHCCCHHHHHHHHHHHHHCCCEeee
Confidence 4677888999999999999999874
No 71
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=28.88 E-value=84 Score=17.85 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=21.6
Q ss_pred ECCCCHHHHHHHHHHhhhCCcccCC
Q psy14514 45 DLSANHNDFLAQLDMLRKGGWITRA 69 (91)
Q Consensus 45 ~L~~~~~~a~~~L~~L~~~~WiD~~ 69 (91)
.++-++......|+.|++.++|.+.
T Consensus 43 ~l~is~~tv~~~l~~L~~~glv~~~ 67 (109)
T 1sfx_A 43 ELDLSARFVRDRLKVLLKRGFVRRE 67 (109)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHCCCHHHHHHHHHHHHHCCCEEEE
Confidence 4577888999999999999999873
No 72
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=28.79 E-value=40 Score=20.42 Aligned_cols=33 Identities=12% Similarity=0.296 Sum_probs=26.6
Q ss_pred ECCCCHHHHHHHHHHhhhCCcccCC-----CcEEEEEe
Q psy14514 45 DLSANHNDFLAQLDMLRKGGWITRA-----TRVVFIDF 77 (91)
Q Consensus 45 ~L~~~~~~a~~~L~~L~~~~WiD~~-----TRAvfvEF 77 (91)
.++-++......++.|.+.+||.+. .|.+.+..
T Consensus 50 ~l~~~~stvs~~l~~L~~~G~v~r~~~~~d~r~~~~~~ 87 (152)
T 1ku9_A 50 ELKISKGNVSMSLKKLEELGFVRKVWIKGERKNYYEAV 87 (152)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEEEECCTTCSSCEEEEC
T ss_pred HHCcCHHHHHHHHHHHHHCCCEEEEecCCCceEEEeec
Confidence 5677889999999999999999874 46666643
No 73
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=28.26 E-value=47 Score=20.63 Aligned_cols=25 Identities=16% Similarity=0.195 Sum_probs=21.8
Q ss_pred ECCCCHHHHHHHHHHhhhCCcccCC
Q psy14514 45 DLSANHNDFLAQLDMLRKGGWITRA 69 (91)
Q Consensus 45 ~L~~~~~~a~~~L~~L~~~~WiD~~ 69 (91)
.++-++......++.|.+.+||.+.
T Consensus 66 ~l~i~~~tvs~~l~~Le~~Glv~r~ 90 (155)
T 3cdh_A 66 LSLMEQSRMTRIVDQMDARGLVTRV 90 (155)
T ss_dssp HTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHCCCHHHHHHHHHHHHHCCCEEec
Confidence 4678889999999999999999764
No 74
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=26.82 E-value=44 Score=24.97 Aligned_cols=34 Identities=12% Similarity=0.102 Sum_probs=28.4
Q ss_pred ECCCCHHHHHHHHHHhhhCCcccCC-----CcEEEEEee
Q psy14514 45 DLSANHNDFLAQLDMLRKGGWITRA-----TRVVFIDFS 78 (91)
Q Consensus 45 ~L~~~~~~a~~~L~~L~~~~WiD~~-----TRAvfvEFt 78 (91)
.++-++.....+|+.|++.+||.|. -|++.|..|
T Consensus 429 ~~~~~~~~~t~~~~~le~~g~v~r~~~~~D~R~~~i~lT 467 (487)
T 1hsj_A 429 CSEFKPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVT 467 (487)
T ss_dssp SSCCCHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECC
T ss_pred HHCCCHHHHHHHHHHHHHCCCEeecCCCCCCCeEEEEEC
Confidence 5677888999999999999999884 488887765
No 75
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=26.79 E-value=68 Score=19.26 Aligned_cols=34 Identities=15% Similarity=0.250 Sum_probs=25.8
Q ss_pred EC-CCCHHHHHHHHHHhhhCCcccCCC-----cEEEEEee
Q psy14514 45 DL-SANHNDFLAQLDMLRKGGWITRAT-----RVVFIDFS 78 (91)
Q Consensus 45 ~L-~~~~~~a~~~L~~L~~~~WiD~~T-----RAvfvEFt 78 (91)
.+ |-++......|+.|++.++|.+.. |.+.+..|
T Consensus 47 ~l~gis~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT 86 (107)
T 2fsw_A 47 AIPGISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLT 86 (107)
T ss_dssp HSTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEEC
T ss_pred HcccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeeEEEEC
Confidence 45 478888999999999999998743 45555544
No 76
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=26.41 E-value=88 Score=18.41 Aligned_cols=33 Identities=15% Similarity=0.228 Sum_probs=25.2
Q ss_pred ECCCCHHHHHHHHHHhhhCCcccC--CCcEEEEEe
Q psy14514 45 DLSANHNDFLAQLDMLRKGGWITR--ATRVVFIDF 77 (91)
Q Consensus 45 ~L~~~~~~a~~~L~~L~~~~WiD~--~TRAvfvEF 77 (91)
.++-++......|+.|++.++|.+ ..|.+....
T Consensus 43 ~l~is~~tv~~~l~~L~~~gli~~~~~gr~~~y~l 77 (114)
T 2oqg_A 43 RLPVSRQAIAKHLNALQACGLVESVKVGREIRYRA 77 (114)
T ss_dssp HSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEE
T ss_pred HHCcCHHHHHHHHHHHHHCCCeeEEecCCEEEEEe
Confidence 467788899999999999999976 345555443
No 77
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=26.33 E-value=35 Score=21.74 Aligned_cols=34 Identities=26% Similarity=0.389 Sum_probs=24.5
Q ss_pred ECCCCHHHHHHHHHHhhhCCcccCC-----CcEEEEEee
Q psy14514 45 DLSANHNDFLAQLDMLRKGGWITRA-----TRVVFIDFS 78 (91)
Q Consensus 45 ~L~~~~~~a~~~L~~L~~~~WiD~~-----TRAvfvEFt 78 (91)
.++-++......|+.|.+.+||.+. -|.+.|..|
T Consensus 71 ~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT 109 (168)
T 3u2r_A 71 RLISRAPDITRLIDRLDDRGLVLRTRKPENRRVVEVALT 109 (168)
T ss_dssp HC---CTHHHHHHHHHHHTTSEEEEEETTEEEEEEEEEC
T ss_pred HHCCChhhHHHHHHHHHHCCCEeecCCCCCCCeeEeEEC
Confidence 3566677888999999999999874 466776654
No 78
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=26.25 E-value=18 Score=22.55 Aligned_cols=25 Identities=24% Similarity=0.305 Sum_probs=16.9
Q ss_pred ECCCCHHHHHHHHHHhhhCCcccCC
Q psy14514 45 DLSANHNDFLAQLDMLRKGGWITRA 69 (91)
Q Consensus 45 ~L~~~~~~a~~~L~~L~~~~WiD~~ 69 (91)
.++-++......++.|.+.+||.+.
T Consensus 66 ~l~~~~~~vs~~l~~L~~~Glv~r~ 90 (148)
T 3jw4_A 66 FFGRRGASITSMLQGLEKKGYIERR 90 (148)
T ss_dssp C------CHHHHHHHHHHTTSBCCC
T ss_pred HHCCChhHHHHHHHHHHHCCCEEee
Confidence 4666777888999999999999775
No 79
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=25.46 E-value=57 Score=20.04 Aligned_cols=27 Identities=15% Similarity=0.351 Sum_probs=22.4
Q ss_pred ECCCCHHHHHHHHHHhhhCCcccCCCc
Q psy14514 45 DLSANHNDFLAQLDMLRKGGWITRATR 71 (91)
Q Consensus 45 ~L~~~~~~a~~~L~~L~~~~WiD~~TR 71 (91)
.|+-++......|+.|++.++|.+..+
T Consensus 40 ~l~is~~tv~~~l~~Le~~Gli~r~~~ 66 (139)
T 2x4h_A 40 DLKIAPSSVFEEVSHLEEKGLVKKKED 66 (139)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HhCCChHHHHHHHHHHHHCCCEEecCC
Confidence 466778888999999999999988544
No 80
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=25.31 E-value=43 Score=21.94 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHHHHhhhCCcccCCCcE
Q psy14514 46 LSANHNDFLAQLDMLRKGGWITRATRV 72 (91)
Q Consensus 46 L~~~~~~a~~~L~~L~~~~WiD~~TRA 72 (91)
||-+++...++++.|++.++|...-+-
T Consensus 173 lG~sr~tvsR~l~~L~~~g~I~~~~~~ 199 (222)
T 1ft9_A 173 IGSSRQTTSTALNSLIKEGYISRQGRG 199 (222)
T ss_dssp HCSCHHHHHHHHHHHHHTTSSEECSTT
T ss_pred hCCcHHHHHHHHHHHHHCCcEEEcCCc
Confidence 667778888999999999999986655
No 81
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=24.96 E-value=60 Score=20.53 Aligned_cols=27 Identities=11% Similarity=0.223 Sum_probs=23.2
Q ss_pred ECCCCHHHHHHHHHHhhhCCcccCCCc
Q psy14514 45 DLSANHNDFLAQLDMLRKGGWITRATR 71 (91)
Q Consensus 45 ~L~~~~~~a~~~L~~L~~~~WiD~~TR 71 (91)
.++-+..+..+.|+.|.+.++|.+..+
T Consensus 60 ~l~~s~~~V~~~l~~Le~kGlI~~~~~ 86 (128)
T 2vn2_A 60 RMTVSAAECMEMVRRLLQKGMIAIEEH 86 (128)
T ss_dssp TSSSCHHHHHHHHHHHHHTTSSEECC-
T ss_pred HHCcCHHHHHHHHHHHHHCCCEEEEeE
Confidence 467888999999999999999998665
No 82
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=24.94 E-value=24 Score=21.73 Aligned_cols=34 Identities=9% Similarity=0.153 Sum_probs=20.5
Q ss_pred ECCCCHHHHHHHHHHhhhCCcccCC-----CcEEEEEee
Q psy14514 45 DLSANHNDFLAQLDMLRKGGWITRA-----TRVVFIDFS 78 (91)
Q Consensus 45 ~L~~~~~~a~~~L~~L~~~~WiD~~-----TRAvfvEFt 78 (91)
.++-++......++.|.+.+||.+. -|.+.+..|
T Consensus 60 ~l~~~~~tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT 98 (142)
T 3ech_A 60 QMCRDKALITRKIRELEGRNLVRRERNPSDQRSFQLFLT 98 (142)
T ss_dssp HHC---CHHHHHHHHHHHTTSEEC----------CCEEC
T ss_pred HhCCCHHHHHHHHHHHHHCCCEeeccCCCCCCeeeeEEC
Confidence 3566677888999999999999874 245555443
No 83
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=23.68 E-value=58 Score=21.65 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=19.0
Q ss_pred CCCHHHHHHHHHHhhhCCcccC
Q psy14514 47 SANHNDFLAQLDMLRKGGWITR 68 (91)
Q Consensus 47 ~~~~~~a~~~L~~L~~~~WiD~ 68 (91)
|.+.+....+|..|++.+|||.
T Consensus 45 g~~~e~Ie~vl~~l~~~g~ldD 66 (162)
T 3dfg_A 45 GIEPEAAQAAVERLAGEGWQDD 66 (162)
T ss_dssp TCCHHHHHHHHHHHHHTTSCCH
T ss_pred CCCHHHHHHHHHHHHHcCCCCH
Confidence 4567788899999999999985
No 84
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=23.09 E-value=46 Score=23.73 Aligned_cols=35 Identities=17% Similarity=0.419 Sum_probs=28.8
Q ss_pred EECCCCHHHHHHHHHHhhhCCcccCC-----CcEEEEEee
Q psy14514 44 QDLSANHNDFLAQLDMLRKGGWITRA-----TRVVFIDFS 78 (91)
Q Consensus 44 ~~L~~~~~~a~~~L~~L~~~~WiD~~-----TRAvfvEFt 78 (91)
..++-++.....+++.|.+.+||.|. -|++.|..|
T Consensus 182 ~~l~i~~~tvt~~v~rLe~~GlV~R~~~~~DrR~~~i~LT 221 (250)
T 1p4x_A 182 ETIHHKYPQTVRALNNLKKQGYLIKERSTEDERKILIHMD 221 (250)
T ss_dssp HHSSSCHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECC
T ss_pred HHHCCChhhHHHHHHHHHHCCCEEeeCCCCCCCeEEEEEC
Confidence 35677888999999999999999873 388887765
No 85
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=22.93 E-value=60 Score=21.94 Aligned_cols=22 Identities=9% Similarity=0.042 Sum_probs=19.0
Q ss_pred CCCHHHHHHHHHHhhhCCcccC
Q psy14514 47 SANHNDFLAQLDMLRKGGWITR 68 (91)
Q Consensus 47 ~~~~~~a~~~L~~L~~~~WiD~ 68 (91)
|.+.+....+|..|++.+|||.
T Consensus 46 g~~~~~ie~vl~~L~~~g~ldD 67 (177)
T 3e3v_A 46 DIHEDYISEIINKLIDLDLIND 67 (177)
T ss_dssp TCCHHHHHHHHHHHHHTTSSCH
T ss_pred CCCHHHHHHHHHHHHHcCCCCH
Confidence 4567888999999999999985
No 86
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=21.90 E-value=63 Score=21.31 Aligned_cols=21 Identities=14% Similarity=0.343 Sum_probs=18.5
Q ss_pred CCHHHHHHHHHHhhhCCcccC
Q psy14514 48 ANHNDFLAQLDMLRKGGWITR 68 (91)
Q Consensus 48 ~~~~~a~~~L~~L~~~~WiD~ 68 (91)
.+.+....+|..|++.+|||.
T Consensus 44 ~~~~~i~~vl~~l~~~g~ldD 64 (159)
T 3c1d_A 44 ATAEDYERVIAWCHEHGYLDD 64 (159)
T ss_dssp CCHHHHHHHHHHHHHTTSCCH
T ss_pred CCHHHHHHHHHHHHHcCCcCH
Confidence 467888899999999999985
No 87
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=21.32 E-value=72 Score=20.28 Aligned_cols=34 Identities=15% Similarity=0.320 Sum_probs=26.5
Q ss_pred EC-CCCHHHHHHHHHHhhhCCcccCCC-----cEEEEEee
Q psy14514 45 DL-SANHNDFLAQLDMLRKGGWITRAT-----RVVFIDFS 78 (91)
Q Consensus 45 ~L-~~~~~~a~~~L~~L~~~~WiD~~T-----RAvfvEFt 78 (91)
.| |-++......|+.|++.++|.+.. |.+.+..|
T Consensus 57 ~l~gis~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT 96 (131)
T 1yyv_A 57 XMGGVSEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLT 96 (131)
T ss_dssp HSTTCCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEEC
T ss_pred HhccCCHHHHHHHHHHHHHCCcEEEEecCCCCCeEEEEEC
Confidence 45 578888899999999999998743 56666654
No 88
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A
Probab=21.11 E-value=85 Score=21.96 Aligned_cols=25 Identities=12% Similarity=-0.070 Sum_probs=20.7
Q ss_pred CCeEEECCCCHHHHHHHHHHhhhCC
Q psy14514 40 SGFYQDLSANHNDFLAQLDMLRKGG 64 (91)
Q Consensus 40 GGYv~~L~~~~~~a~~~L~~L~~~~ 64 (91)
||-++-|..+.+.+.++.+.+++.+
T Consensus 296 Ggc~ial~~~~~~~~~i~~~~~~~G 320 (335)
T 3gon_A 296 GDCGIALSFDAQSTKTLKNRWADLG 320 (335)
T ss_dssp SSEEEEEECSHHHHHHHHHHHHHTT
T ss_pred hheEEEEECCHHHHHHHHHHHHHCC
Confidence 4678889888888888888888876
No 89
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=20.82 E-value=62 Score=18.25 Aligned_cols=24 Identities=13% Similarity=0.122 Sum_probs=20.9
Q ss_pred ECCCCHHHHHHHHHHhhhCCcccC
Q psy14514 45 DLSANHNDFLAQLDMLRKGGWITR 68 (91)
Q Consensus 45 ~L~~~~~~a~~~L~~L~~~~WiD~ 68 (91)
.|+-++....+.|+.|++.++|..
T Consensus 34 ~lglsr~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 34 KCQVPKKTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp HHCSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHCcCHHHHHHHHHHHHHCCcEec
Confidence 467788899999999999999865
No 90
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=20.55 E-value=1.2e+02 Score=18.59 Aligned_cols=37 Identities=5% Similarity=0.012 Sum_probs=26.6
Q ss_pred CeEEECCCCHHHHHHHHHHhhhCCcccCCCcEEEEEee
Q psy14514 41 GFYQDLSANHNDFLAQLDMLRKGGWITRATRVVFIDFS 78 (91)
Q Consensus 41 GYv~~L~~~~~~a~~~L~~L~~~~WiD~~TRAvfvEFt 78 (91)
||.+--=.+.++|.+.++.|... .++...|.+-|+|+
T Consensus 132 g~afV~f~~~~~A~~A~~~l~g~-~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 132 GVAFVRYNKREEAQEAISALNNV-IPEGGSQPLSVRLA 168 (168)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTC-CCTTCSSCCEEEEC
T ss_pred eEEEEEECCHHHHHHHHHHhcCC-EecCCCeEEEEEeC
Confidence 56443335688999999988665 67777788888774
No 91
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=20.32 E-value=62 Score=18.52 Aligned_cols=25 Identities=16% Similarity=0.163 Sum_probs=21.7
Q ss_pred ECCCCHHHHHHHHHHhhhCCcccCC
Q psy14514 45 DLSANHNDFLAQLDMLRKGGWITRA 69 (91)
Q Consensus 45 ~L~~~~~~a~~~L~~L~~~~WiD~~ 69 (91)
.++-++......|+.|++.++|.+.
T Consensus 45 ~l~is~~tv~~~l~~L~~~g~v~~~ 69 (109)
T 2d1h_A 45 IFKLSKTTVENSLKKLIELGLVVRT 69 (109)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHCcCHHHHHHHHHHHHHCCCeEee
Confidence 5677888999999999999999763
Done!