RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14514
         (91 letters)



>d2cuja1 a.4.1.18 (A:8-108) Transcriptional adaptor 2-like, TADA2L
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 101

 Score = 23.6 bits (51), Expect = 3.3
 Identities = 6/13 (46%), Positives = 9/13 (69%)

Query: 57  LDMLRKGGWITRA 69
            D L + G+IT+A
Sbjct: 89  YDFLIREGYITKA 101


>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat
           (Rattus norvegicus) [TaxId: 10116]}
          Length = 214

 Score = 23.6 bits (50), Expect = 4.1
 Identities = 7/42 (16%), Positives = 13/42 (30%)

Query: 25  WDSDYYTGQVGSYPYSGFYQDLSANHNDFLAQLDMLRKGGWI 66
                Y        +   ++D        L +  +LRKG  +
Sbjct: 123 QLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVL 164


>d2ffha2 a.36.1.1 (A:319-418) Signal sequence binding protein Ffh
          {Thermus aquaticus [TaxId: 271]}
          Length = 100

 Score = 22.6 bits (48), Expect = 7.3
 Identities = 6/14 (42%), Positives = 9/14 (64%)

Query: 51 NDFLAQLDMLRKGG 64
           DFL Q+  L++ G
Sbjct: 5  EDFLKQMQNLKRLG 18


>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase
          (MPP) beta chain {Baker's yeast (Saccharomyces
          cerevisiae) [TaxId: 4932]}
          Length = 217

 Score = 22.8 bits (48), Expect = 8.5
 Identities = 7/71 (9%), Positives = 16/71 (22%)

Query: 19 FEGSSVWDSDYYTGQVGSYPYSGFYQDLSANHNDFLAQLDMLRKGGWITRATRVVFIDFS 78
           EG S    DY+           + + +    N          + G +  +       ++
Sbjct: 27 LEGVSWSAPDYFVALATQAIVGNWDRAIGTGTNSPSPLAVAASQNGSLANSYMSFSTSYA 86

Query: 79 MYNANVNLFCF 89
                     
Sbjct: 87 DSGLWGMYIVT 97


>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow
          (Bos taurus) [TaxId: 9913]}
          Length = 209

 Score = 22.5 bits (47), Expect = 9.5
 Identities = 5/28 (17%), Positives = 7/28 (25%)

Query: 19 FEGSSVWDSDYYTGQVGSYPYSGFYQDL 46
           EG      D    QV +     +    
Sbjct: 24 VEGPGWAHPDNVALQVANAIIGHYDCTY 51


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.140    0.440 

Gapped
Lambda     K      H
   0.267   0.0599    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 353,688
Number of extensions: 13907
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 11
Length of query: 91
Length of database: 2,407,596
Length adjustment: 55
Effective length of query: 36
Effective length of database: 1,652,446
Effective search space: 59488056
Effective search space used: 59488056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.2 bits)