BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14515
(586 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9UBN7|HDAC6_HUMAN Histone deacetylase 6 OS=Homo sapiens GN=HDAC6 PE=1 SV=2
Length = 1215
Score = 231 bits (588), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 129/330 (39%), Positives = 174/330 (52%), Gaps = 78/330 (23%)
Query: 7 IKDPCKELGLVQRCKFIQPREATQEEILKKHTIEQIELLATTEGSTDVDALEQLSSHYDA 66
IK+ + GL+ RC Q R A +EE++ H++E I+L+ TT+ + + L L+ YD+
Sbjct: 115 IKEQLIQEGLLDRCVSFQARFAEKEELMLVHSLEYIDLMETTQYMNEGE-LRVLADTYDS 173
Query: 67 IYIHPSSYKLSLLSAGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNG 126
+Y+HP+SY + L++ GS + LVD + EI+NG
Sbjct: 174 VYLHPNSYSCACLAS---------------------------GSVLRLVDAVLGAEIRNG 206
Query: 127 MAVIRPPGHHAMKSEYCGYCFFNNVALAAQHALDNTSVSRVLIVDWDVHHGQATQQMFYN 186
MA+IRPPGHHA S GYC FN+VA+AA++A + RVLIVDWDVHHGQ TQ F
Sbjct: 207 MAIIRPPGHHAQHSLMDGYCMFNHVAVAARYAQQKHRIRRVLIVDWDVHHGQGTQFTFDQ 266
Query: 187 DNRVVYFSIHRYEHGTFWPNLRESEYDHIGEGIGKGYNFNIPLNKTHMKDADYMAVFHQV 246
D V+YFSIHRYE G FWP+L+ S + G G G+GY N+P N+ M+DADY+A F V
Sbjct: 267 DPSVLYFSIHRYEQGRFWPHLKASNWSTTGFGQGQGYTINVPWNQVGMRDADYIAAFLHV 326
Query: 247 LLP----------MVA----------------------------------------EGGY 256
LLP +VA EGGY
Sbjct: 327 LLPVALEFQPQLVLVAAGFDALQGDPKGEMAATPAGFAQLTHLLMGLAGGKLILSLEGGY 386
Query: 257 CLKSLAEGAALTLRALLDDPCPNFETLGTP 286
L++LAEG + +L LL DPCP E+ G P
Sbjct: 387 NLRALAEGVSASLHTLLGDPCPMLESPGAP 416
Score = 194 bits (492), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 99/243 (40%), Positives = 139/243 (57%), Gaps = 29/243 (11%)
Query: 12 KELGLVQRCKFIQPREATQEEILKKHTIEQIELLATTEGSTDVDALEQLSSHYDAIYIHP 71
+ELGL RC + PR AT+ E+L H+ E + L TE L + SS++D+IYI P
Sbjct: 515 EELGLAGRCLTLTPRPATEAELLTCHSAEYVGHLRATE-KMKTRELHRESSNFDSIYICP 573
Query: 72 SSYKLSLLSAGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNGMAVIR 131
S++ + L+ G+ L V+ + GE+ NG AV+R
Sbjct: 574 STFACAQLATGAACRL---------------------------VEAVLSGEVLNGAAVVR 606
Query: 132 PPGHHAMKSEYCGYCFFNNVALAAQHALDNTSVS-RVLIVDWDVHHGQATQQMFYNDNRV 190
PPGHHA + CG+CFFN+VA+AA+HA + + R+LIVDWDVHHG TQ MF +D V
Sbjct: 607 PPGHHAEQDAACGFCFFNSVAVAARHAQTISGHALRILIVDWDVHHGNGTQHMFEDDPSV 666
Query: 191 VYFSIHRYEHGTFWPNLRESEYDHIGEGIGKGYNFNIPLNKTHMKDADYMAVFHQVLLPM 250
+Y S+HRY+HGTF+P E IG G G+ N+ N M DADY+A +H+++LP+
Sbjct: 667 LYVSLHRYDHGTFFPMGDEGASSQIGRAAGTGFTVNVAWNGPRMGDADYLAAWHRLVLPI 726
Query: 251 VAE 253
E
Sbjct: 727 AYE 729
Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/118 (60%), Positives = 88/118 (74%)
Query: 360 MSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKAL 419
M D +Y+AA+ +++LPIAY+FNPELVLVSAG+DA DPLGGC+VSPE YAH TH L L
Sbjct: 710 MGDADYLAAWHRLVLPIAYEFNPELVLVSAGFDAARGDPLGGCQVSPEGYAHLTHLLMGL 769
Query: 420 AQGRIILALEGGYNISSISYAMTLCTKALLGDPLPLLESDLDINSSAVTSIKVIIIIN 477
A GRIIL LEGGYN++SIS +M CT++LLGDP PLL S A+ SI I ++
Sbjct: 770 ASGRIILILEGGYNLTSISESMAACTRSLLGDPPPLLTLPRPPLSGALASITETIQVH 827
Score = 110 bits (276), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 74/116 (63%)
Query: 359 GMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKA 418
GM D +YIAAF V+LP+A +F P+LVLV+AG+DA DP G +P +A TH L
Sbjct: 313 GMRDADYIAAFLHVLLPVALEFQPQLVLVAAGFDALQGDPKGEMAATPAGFAQLTHLLMG 372
Query: 419 LAQGRIILALEGGYNISSISYAMTLCTKALLGDPLPLLESDLDINSSAVTSIKVII 474
LA G++IL+LEGGYN+ +++ ++ LLGDP P+LES SA S+ +
Sbjct: 373 LAGGKLILSLEGGYNLRALAEGVSASLHTLLGDPCPMLESPGAPCRSAQASVSCAL 428
>sp|Q9Z2V5|HDAC6_MOUSE Histone deacetylase 6 OS=Mus musculus GN=Hdac6 PE=1 SV=3
Length = 1149
Score = 228 bits (581), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 124/322 (38%), Positives = 171/322 (53%), Gaps = 78/322 (24%)
Query: 15 GLVQRCKFIQPREATQEEILKKHTIEQIELLATTEGSTDVDALEQLSSHYDAIYIHPSSY 74
GL+ RC Q R A +EE++ H++E I+L+ TT+ + + L L+ YD++Y+HP+SY
Sbjct: 122 GLLGRCVSFQARFAEKEELMLVHSLEYIDLMETTQYMNEGE-LRVLAETYDSVYLHPNSY 180
Query: 75 KLSLLSAGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNGMAVIRPPG 134
+ L+ G S + LVD + EI+NGMAVIRPPG
Sbjct: 181 SCACLATG---------------------------SVLRLVDALMGAEIRNGMAVIRPPG 213
Query: 135 HHAMKSEYCGYCFFNNVALAAQHALDNTSVSRVLIVDWDVHHGQATQQMFYNDNRVVYFS 194
HHA + GYC FN++A+AA++A + RVLIVDWDVHHGQ TQ +F D V+YFS
Sbjct: 214 HHAQHNLMDGYCMFNHLAVAARYAQKKHRIQRVLIVDWDVHHGQGTQFIFDQDPSVLYFS 273
Query: 195 IHRYEHGTFWPNLRESEYDHIGEGIGKGYNFNIPLNKTHMKDADYMAVFHQVLLPMVA-- 252
IHRYEHG FWP+L+ S + IG G G+GY N+P N+T M+DADY+A F +LLP+ +
Sbjct: 274 IHRYEHGRFWPHLKASNWSTIGFGQGQGYTINVPWNQTGMRDADYIAAFLHILLPVASEF 333
Query: 253 ------------------------------------------------EGGYCLKSLAEG 264
EGGY L++LA+G
Sbjct: 334 QPQLVLVAAGFDALHGDPKGEMAATPAGFAHLTHLLMGLAGGKLILSLEGGYNLRALAKG 393
Query: 265 AALTLRALLDDPCPNFETLGTP 286
+ +L LL DPCP E+ P
Sbjct: 394 VSASLHTLLGDPCPMLESCVVP 415
Score = 187 bits (476), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 109/326 (33%), Positives = 156/326 (47%), Gaps = 79/326 (24%)
Query: 12 KELGLVQRCKFIQPREATQEEILKKHTIEQIELLATTEGSTDVDALEQLSSHYDAIYIHP 71
+E+GL RC + R A E+L H+ E +E L TTE D L + +++D+IYI P
Sbjct: 514 EEVGLAARCLILPARPALDSELLTCHSAEYVEHLRTTEKMKTRD-LHREGANFDSIYICP 572
Query: 72 SSYKLSLLSAGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNGMAVIR 131
S++ + L+ G+ L V+ + GE+ NG+AV+R
Sbjct: 573 STFACAKLATGAACRL---------------------------VEAVLSGEVLNGIAVVR 605
Query: 132 PPGHHAMKSEYCGYCFFNNVALAAQHA-LDNTSVSRVLIVDWDVHHGQATQQMFYNDNRV 190
PPGHHA + CG+CFFN+VA+AA+HA + R+LIVDWDVHHG TQ +F +D V
Sbjct: 606 PPGHHAEPNAACGFCFFNSVAVAARHAQIIAGRALRILIVDWDVHHGNGTQHIFEDDPSV 665
Query: 191 VYFSIHRYEHGTFWPNLRESEYDHIGEGIGKGYNFNIPLNKTHMKDADYMAVFHQVLLP- 249
+Y S+HRY+ GTF+P E +G G G+ N+P N M DADY+A +H+++LP
Sbjct: 666 LYVSLHRYDRGTFFPMGDEGASSQVGRDAGIGFTVNVPWNGPRMGDADYLAAWHRLVLPI 725
Query: 250 -------------------------------------------------MVAEGGYCLKS 260
++ EGGY L S
Sbjct: 726 AYEFNPELVLISAGFDAAQGDPLGGCQVTPEGYAHLTHLLMGLAGGRIILILEGGYNLAS 785
Query: 261 LAEGAALTLRALLDDPCPNFETLGTP 286
++E A +LL DP P L P
Sbjct: 786 ISESMAACTHSLLGDPPPQLTLLRPP 811
Score = 144 bits (364), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/142 (50%), Positives = 94/142 (66%), Gaps = 6/142 (4%)
Query: 338 DVPLLFLLQIPGCYPHRTKSKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVND 397
D + F + +P P M D +Y+AA+ +++LPIAY+FNPELVL+SAG+DA D
Sbjct: 693 DAGIGFTVNVPWNGPR------MGDADYLAAWHRLVLPIAYEFNPELVLISAGFDAAQGD 746
Query: 398 PLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYAMTLCTKALLGDPLPLLE 457
PLGGC+V+PE YAH TH L LA GRIIL LEGGYN++SIS +M CT +LLGDP P L
Sbjct: 747 PLGGCQVTPEGYAHLTHLLMGLAGGRIILILEGGYNLASISESMAACTHSLLGDPPPQLT 806
Query: 458 SDLDINSSAVTSIKVIIIINNN 479
S A+ SI +I ++
Sbjct: 807 LLRPPQSGALVSISEVIQVHRK 828
Score = 115 bits (288), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 77/112 (68%)
Query: 359 GMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKA 418
GM D +YIAAF ++LP+A +F P+LVLV+AG+DA DP G +P +AH TH L
Sbjct: 312 GMRDADYIAAFLHILLPVASEFQPQLVLVAAGFDALHGDPKGEMAATPAGFAHLTHLLMG 371
Query: 419 LAQGRIILALEGGYNISSISYAMTLCTKALLGDPLPLLESDLDINSSAVTSI 470
LA G++IL+LEGGYN+ +++ ++ LLGDP P+LES + +SA TSI
Sbjct: 372 LAGGKLILSLEGGYNLRALAKGVSASLHTLLGDPCPMLESCVVPCASAQTSI 423
>sp|Q969S8|HDA10_HUMAN Histone deacetylase 10 OS=Homo sapiens GN=HDAC10 PE=1 SV=1
Length = 669
Score = 217 bits (552), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 116/320 (36%), Positives = 165/320 (51%), Gaps = 78/320 (24%)
Query: 9 DPCKELGLVQRCKFIQPREATQEEILKKHTIEQIELLATTEGSTDVDALEQLSSHYDAIY 68
D ++ GL QRC + REA++EE+ H+ E + L+ T+ + L+ LS +DAIY
Sbjct: 36 DRLRQRGLEQRCLRLSAREASEEELGLVHSPEYVSLVRETQ-VLGKEELQALSGQFDAIY 94
Query: 69 IHPSSYKLSLLSAGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNGMA 128
HPS++ + L+AG + ++LVD + G ++NG+A
Sbjct: 95 FHPSTFHCARLAAG---------------------------AGLQLVDAVLTGAVQNGLA 127
Query: 129 VIRPPGHHAMKSEYCGYCFFNNVALAAQHALDNTSVSRVLIVDWDVHHGQATQQMFYNDN 188
++RPPGHH ++ G+C FNNVA+AA HA + R+L+VDWDVHHGQ Q +F +D
Sbjct: 128 LVRPPGHHGQRAAANGFCVFNNVAIAAAHAKQKHGLHRILVVDWDVHHGQGIQYLFEDDP 187
Query: 189 RVVYFSIHRYEHGTFWPNLRESEYDHIGEGIGKGYNFNIPLNKTHMKDADYMAVFHQVLL 248
V+YFS HRYEHG FWP LRES+ D +G G G G+ N+P N+ M +ADY+A F +LL
Sbjct: 188 SVLYFSWHRYEHGRFWPFLRESDADAVGRGQGLGFTVNLPWNQVGMGNADYVAAFLHLLL 247
Query: 249 PM--------------------------------------------------VAEGGYCL 258
P+ V EGGY L
Sbjct: 248 PLAFEFDPELVLVSAGFDSAIGDPEGQMQATPECFAHLTQLLQVLAGGRVCAVLEGGYHL 307
Query: 259 KSLAEGAALTLRALLDDPCP 278
+SLAE +T++ LL DP P
Sbjct: 308 ESLAESVCMTVQTLLGDPAP 327
Score = 112 bits (279), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 78/113 (69%)
Query: 359 GMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKA 418
GM + +Y+AAF ++LP+A++F+PELVLVSAG+D+ + DP G + +PE +AH T L+
Sbjct: 232 GMGNADYVAAFLHLLLPLAFEFDPELVLVSAGFDSAIGDPEGQMQATPECFAHLTQLLQV 291
Query: 419 LAQGRIILALEGGYNISSISYAMTLCTKALLGDPLPLLESDLDINSSAVTSIK 471
LA GR+ LEGGY++ S++ ++ + + LLGDP P L + SA+ SI+
Sbjct: 292 LAGGRVCAVLEGGYHLESLAESVCMTVQTLLGDPAPPLSGPMAPCQSALESIQ 344
Score = 34.3 bits (77), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 365 YIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALAQGRI 424
+++ ++LP+AY F P+LVLV+ G + P A L+ LA GR+
Sbjct: 555 FLSCILGLVLPLAYGFQPDLVLVALGPGHGLQGP---------HAALLAAMLRGLAGGRV 605
Query: 425 ILALE 429
+ LE
Sbjct: 606 LALLE 610
>sp|Q6P3E7|HDA10_MOUSE Histone deacetylase 10 OS=Mus musculus GN=Hdac10 PE=2 SV=2
Length = 666
Score = 213 bits (543), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 116/330 (35%), Positives = 169/330 (51%), Gaps = 78/330 (23%)
Query: 9 DPCKELGLVQRCKFIQPREATQEEILKKHTIEQIELLATTEGSTDVDALEQLSSHYDAIY 68
D ++ GL +RC + EA++EE+ H+ E I L+ T+ + D + L LS Y+A+Y
Sbjct: 36 DGLRQRGLEERCLCLSACEASEEELGLVHSPEYIALVQKTQ-TLDKEELHALSKQYNAVY 94
Query: 69 IHPSSYKLSLLSAGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNGMA 128
HP ++ + L+AG+ + +LVD + G + NG+A
Sbjct: 95 FHPDTFHCARLAAGAAL---------------------------QLVDAVLTGAVHNGLA 127
Query: 129 VIRPPGHHAMKSEYCGYCFFNNVALAAQHALDNTSVSRVLIVDWDVHHGQATQQMFYNDN 188
++RPPGHH+ ++ G+C FNNVALAA+HA + R+LIVDWDVHHGQ Q +F +D
Sbjct: 128 LVRPPGHHSQRAAANGFCVFNNVALAAKHAKQKYGLQRILIVDWDVHHGQGIQYIFNDDP 187
Query: 189 RVVYFSIHRYEHGTFWPNLRESEYDHIGEGIGKGYNFNIPLNKTHMKDADYMAVFHQVLL 248
V+YFS HRYEHG+FWP L ES+ D +G+G G+G+ N+P N+ M +ADY+A F VLL
Sbjct: 188 SVLYFSWHRYEHGSFWPFLPESDADAVGQGQGQGFTVNLPWNQVGMGNADYLAAFLHVLL 247
Query: 249 PM--------------------------------------------------VAEGGYCL 258
P+ V EGGY L
Sbjct: 248 PLAFEFDPELVLVSAGFDSAIGDPEGQMQATPECFAHLTQLLQVLAGGRICAVLEGGYHL 307
Query: 259 KSLAEGAALTLRALLDDPCPNFETLGTPSE 288
+SLA+ + ++ LL DP P L P +
Sbjct: 308 ESLAQSVCMMVQTLLGDPTPPLLGLMVPCQ 337
Score = 111 bits (278), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/115 (45%), Positives = 79/115 (68%)
Query: 359 GMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKA 418
GM + +Y+AAF V+LP+A++F+PELVLVSAG+D+ + DP G + +PE +AH T L+
Sbjct: 232 GMGNADYLAAFLHVLLPLAFEFDPELVLVSAGFDSAIGDPEGQMQATPECFAHLTQLLQV 291
Query: 419 LAQGRIILALEGGYNISSISYAMTLCTKALLGDPLPLLESDLDINSSAVTSIKVI 473
LA GRI LEGGY++ S++ ++ + + LLGDP P L + SA+ SI+ +
Sbjct: 292 LAGGRICAVLEGGYHLESLAQSVCMMVQTLLGDPTPPLLGLMVPCQSALESIQSV 346
>sp|Q569C4|HDA10_RAT Histone deacetylase 10 OS=Rattus norvegicus GN=Hdac10 PE=2 SV=1
Length = 588
Score = 196 bits (497), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 101/245 (41%), Positives = 146/245 (59%), Gaps = 28/245 (11%)
Query: 9 DPCKELGLVQRCKFIQPREATQEEILKKHTIEQIELLATTEGSTDVDALEQLSSHYDAIY 68
D ++ GL +RC+ + EA++EE+ H+ E I L+ T+ + D + L LS YDA+Y
Sbjct: 36 DGLRQRGLEERCQCLSVCEASEEELGLVHSPEYIALVQKTQ-TLDKEELHTLSKQYDAVY 94
Query: 69 IHPSSYKLSLLSAGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNGMA 128
HP ++ + L+AG+ + L VD + G + NG+A
Sbjct: 95 FHPDTFHCARLAAGAALRL---------------------------VDAVLTGAVHNGVA 127
Query: 129 VIRPPGHHAMKSEYCGYCFFNNVALAAQHALDNTSVSRVLIVDWDVHHGQATQQMFYNDN 188
++RPPGHH+ ++ G+C FNNVA+AA+HA + R+LIVDWDVHHGQ Q +F +D
Sbjct: 128 LVRPPGHHSQRAAANGFCVFNNVAIAARHAKQKYGLQRILIVDWDVHHGQGIQYIFEDDP 187
Query: 189 RVVYFSIHRYEHGTFWPNLRESEYDHIGEGIGKGYNFNIPLNKTHMKDADYMAVFHQVLL 248
V+YFS HRYEHG FWP L ES+ D +G G G+G+ N+P N+ M +ADY+A F VLL
Sbjct: 188 SVLYFSWHRYEHGNFWPFLPESDADTVGRGRGQGFTVNLPWNQVGMGNADYLAAFLHVLL 247
Query: 249 PMVAE 253
P+ E
Sbjct: 248 PLAFE 252
Score = 84.0 bits (206), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 52/71 (73%)
Query: 359 GMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKA 418
GM + +Y+AAF V+LP+A++F+PELVLVSAG+D+ + DP G + +PE +AH T L+
Sbjct: 232 GMGNADYLAAFLHVLLPLAFEFDPELVLVSAGFDSAIGDPEGQMQATPECFAHLTQLLQV 291
Query: 419 LAQGRIILALE 429
LA GRI LE
Sbjct: 292 LAGGRICAVLE 302
>sp|Q8LRK8|HDA18_ARATH Histone deacetylase 18 OS=Arabidopsis thaliana GN=HDA18 PE=2 SV=1
Length = 682
Score = 178 bits (452), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 140/242 (57%), Gaps = 30/242 (12%)
Query: 15 GLVQRCKFIQPREATQEEILKKHTIEQIELLATTEGSTDVDALEQLSSHYDAIYIHPSSY 74
G+ QRC + +A + + HT + + L+ + +++S D+IY++
Sbjct: 97 GVTQRCVVLGGSKAEDKHLKLVHTKKHVNLVKSISTKKKDSRRNKIASQLDSIYLN---- 152
Query: 75 KLSLLSAGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNGMAVIRPPG 134
GS ++Y L+AGS +++ + + GE+ G A++RPPG
Sbjct: 153 -------------------GGSSEAAY----LAAGSVVKVAEKVAEGELDCGFAIVRPPG 189
Query: 135 HHAMKSEYCGYCFFNNVALAAQHALD---NTSVSRVLIVDWDVHHGQATQQMFYNDNRVV 191
HHA E G+C FNNVA+AA L+ + V ++LIVDWD+HHG TQ+MF+ D+RV+
Sbjct: 190 HHAESDEAMGFCLFNNVAVAASFLLNERPDLDVKKILIVDWDIHHGNGTQKMFWKDSRVL 249
Query: 192 YFSIHRYEHGTFWPNLRESEYDHIGEGIGKGYNFNIPLNKTHMKDADYMAVFHQVLLPMV 251
FS+HR++HG+F+P + +++ +GEG G+G+N N+P + DADY+AV++ +L+P+
Sbjct: 250 IFSVHRHDHGSFYPFGDDGDFNMVGEGPGEGFNINVPWEQGGCGDADYLAVWNHILIPVT 309
Query: 252 AE 253
E
Sbjct: 310 KE 311
Score = 96.7 bits (239), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 61/93 (65%)
Query: 359 GMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKA 418
G D +Y+A + +++P+ +F P+++L+SAG+DA + DPLGGC V+P Y+ L
Sbjct: 291 GCGDADYLAVWNHILIPVTKEFKPDIILLSAGFDAAIGDPLGGCCVTPYGYSVMLKKLME 350
Query: 419 LAQGRIILALEGGYNISSISYAMTLCTKALLGD 451
A G+I+LALEGGYN+ S+ + C + LL D
Sbjct: 351 FAHGKIVLALEGGYNLESLGKSSLACVQVLLED 383
>sp|Q8RX28|HDA5_ARATH Histone deacetylase 5 OS=Arabidopsis thaliana GN=HDA5 PE=2 SV=1
Length = 660
Score = 176 bits (446), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 84/242 (34%), Positives = 138/242 (57%), Gaps = 30/242 (12%)
Query: 15 GLVQRCKFIQPREATQEEILKKHTIEQIELLATTEGSTDVDALEQLSSHYDAIYIHPSSY 74
G+ QRC + +A + + HT + + L+ + +++S ++IY++
Sbjct: 64 GVSQRCVVLGSSKAEDKHLQLVHTKDHVNLVKSISTKQKDYRRNRIASQLNSIYLN---- 119
Query: 75 KLSLLSAGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNGMAVIRPPG 134
GS ++Y L+AGS ++L + + GE+ G A++RPPG
Sbjct: 120 -------------------GGSSEAAY----LAAGSVVKLAEKVAEGELDCGFAIVRPPG 156
Query: 135 HHAMKSEYCGYCFFNNVALAAQHALD---NTSVSRVLIVDWDVHHGQATQQMFYNDNRVV 191
HHA E G+C FNNVA+AA L+ + V ++LIVDWDVHHG TQ+MF+ D RV+
Sbjct: 157 HHAEADEAMGFCLFNNVAVAASFLLNERPDLGVKKILIVDWDVHHGNGTQKMFWKDPRVL 216
Query: 192 YFSIHRYEHGTFWPNLRESEYDHIGEGIGKGYNFNIPLNKTHMKDADYMAVFHQVLLPMV 251
+FS+HR+E+G F+P + +Y+ +GEG G+G+N N+P ++ DADY+A + +L+P+
Sbjct: 217 FFSVHRHEYGGFYPAGDDGDYNMVGEGPGEGFNINVPWDQGRCGDADYLAAWDHILIPVA 276
Query: 252 AE 253
E
Sbjct: 277 RE 278
Score = 102 bits (254), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 65/91 (71%)
Query: 361 SDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALA 420
D +Y+AA+ +++P+A +FNP+++ +SAG+DA +NDPLGGC V+P Y+ L A
Sbjct: 260 GDADYLAAWDHILIPVAREFNPDVIFLSAGFDAAINDPLGGCCVTPYGYSVMLKKLMEFA 319
Query: 421 QGRIILALEGGYNISSISYAMTLCTKALLGD 451
QG+I+LALEGGYN+ SI+ + C + LL D
Sbjct: 320 QGKIVLALEGGYNLDSIAKSSLACVQVLLED 350
>sp|Q20296|HDA6_CAEEL Histone deacetylase 6 OS=Caenorhabditis elegans GN=hda-6 PE=2 SV=2
Length = 955
Score = 175 bits (443), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 85/178 (47%), Positives = 113/178 (63%), Gaps = 5/178 (2%)
Query: 99 SSYKLSLLSAGSTIELVDNICRGEIKNGMAVIRPPGHHAMKSEYCGYCFFNNVALAAQHA 158
+S K++ +L + I E NG AV+RPPGHHA CG+C FNNVA AA+ A
Sbjct: 109 NSMKVAKDGVACVRDLTNRIMANEASNGFAVVRPPGHHADSVSPCGFCLFNNVAQAAEEA 168
Query: 159 LDNTSVSRVLIVDWDVHHGQATQQMFYNDNRVVYFSIHRYEHGTFWPNLRESEYDHIGEG 218
+ R+LIVD DVHHG TQ++FY+D RV+YFSIHR+EHG FWP+L ES++DHIG G
Sbjct: 169 F-FSGAERILIVDLDVHHGHGTQRIFYDDKRVLYFSIHRHEHGLFWPHLPESDFDHIGSG 227
Query: 219 IGKGYNFNIPLNKTHMKDADYMAVFHQVLLPMVAEGGYCLKSLAEGAALTLRALLDDP 276
G GYN N+ LN+T D+DY+++ VLLP+ + ++ G ALL DP
Sbjct: 228 KGLGYNANLALNETGCTDSDYLSIIFHVLLPLATQFDPHFVIISAG----FDALLGDP 281
Score = 161 bits (407), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 91/268 (33%), Positives = 145/268 (54%), Gaps = 34/268 (12%)
Query: 12 KELGLVQRCKFIQ-PREATQEEILKKHTIEQIELLATTEGSTDVDALEQLSSHYDAIYIH 70
+E G++++C R AT EEI HT + +E L TTE D + +E+ +++IY
Sbjct: 461 RESGVLEKCVDRNCERIATNEEIRLVHTKKMLEHLRTTETMKDEELMEEAEKEFNSIY-- 518
Query: 71 PSSYKLSLLSAGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEI--KNGMA 128
L R+ + K++ + G+ ++ VD I + +N +
Sbjct: 519 ----------------LTRD---------TLKVARKAVGAVLQSVDEIFEKDAGQRNALV 553
Query: 129 VIRPPGHHAMKSEYCGYCFFNNVALAAQHALDNTSVSRVLIVDWDVHHGQATQQMFYNDN 188
++RPPGHHA S+ G+C FNNVA+AA++A RVLI+DWDVHHG TQ++FY D+
Sbjct: 554 IVRPPGHHASASKSSGFCIFNNVAVAAKYAQRRHKAKRVLILDWDVHHGNGTQEIFYEDS 613
Query: 189 RVVYFSIHRYEHGTFWPNLRESEYDHIGEGIGKGYNFNIPLNKTHMKDADYMAVFHQVLL 248
V+Y SIHR++ G F+P +Y +GEG G+G + N+P + M D +Y F +V++
Sbjct: 614 NVMYMSIHRHDKGNFYPIGEPKDYSDVGEGAGEGMSVNVPFSGVQMGDNEYQMAFQRVIM 673
Query: 249 PMVAEGGYCLKSLAEGAALTLRALLDDP 276
P+ + L ++ G A +DDP
Sbjct: 674 PIAYQFNPDLVLISAG----FDAAVDDP 697
Score = 111 bits (278), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/86 (62%), Positives = 67/86 (77%), Gaps = 1/86 (1%)
Query: 360 MSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKAL 419
M D EY AFQ+VI+PIAYQFNP+LVL+SAG+DA V+DPLG KV+PE +A T+ L +L
Sbjct: 659 MGDNEYQMAFQRVIMPIAYQFNPDLVLISAGFDAAVDDPLGEYKVTPETFALMTYQLSSL 718
Query: 420 AQGRIILALEGGYNISSIS-YAMTLC 444
A GRII LEGGYN++SIS A +C
Sbjct: 719 AGGRIITVLEGGYNLTSISNSAQAVC 744
Score = 99.8 bits (247), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 84/133 (63%), Gaps = 1/133 (0%)
Query: 359 GMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKA 418
G +D +Y++ V+LP+A QF+P V++SAG+DA + DPLGG ++P+ Y+H + LK+
Sbjct: 242 GCTDSDYLSIIFHVLLPLATQFDPHFVIISAGFDALLGDPLGGMCLTPDGYSHILYHLKS 301
Query: 419 LAQGRIILALEGGYNISSISYAMTLCTKALLG-DPLPLLESDLDINSSAVTSIKVIIIIN 477
LAQGR+++ LEGGYN + A+ C + LLG P + ++ S+ + + ++ ++
Sbjct: 302 LAQGRMLVVLEGGYNHQISAVAVQRCVRVLLGYAPFSIELNEAPKESTVDSCVSLVSVLR 361
Query: 478 NNNSVYLYCSHRT 490
++ + + Y RT
Sbjct: 362 HHWNCFDYFPSRT 374
>sp|P53973|HDA1_YEAST Histone deacetylase HDA1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=HDA1 PE=1 SV=1
Length = 706
Score = 170 bits (430), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 88/233 (37%), Positives = 131/233 (56%), Gaps = 30/233 (12%)
Query: 23 IQPREATQEEILKKHTIEQIELLATTEGSTDVDALEQLSSHYDAIYIHPSSYKLSLLSAG 82
I R AT EEIL+ HT E +E + +TE + + L++ + D++Y +
Sbjct: 121 IPVRAATSEEILEVHTKEHLEFIESTEKMSREELLKE-TEKGDSVYFN------------ 167
Query: 83 STIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNGMAVIRPPGHHAMKSEY 142
+ SY + L G IE + G +KN +AV+RPPGHHA
Sbjct: 168 ---------------NDSYASARLPCGGAIEACKAVVEGRVKNSLAVVRPPGHHAEPQAA 212
Query: 143 CGYCFFNNVALAAQHALDN--TSVSRVLIVDWDVHHGQATQQMFYNDNRVVYFSIHRYEH 200
G+C F+NVA+AA++ L N SV R++I+DWD+HHG TQ+ FY D++V+Y S+HR+E
Sbjct: 213 GGFCLFSNVAVAAKNILKNYPESVRRIMILDWDIHHGNGTQKSFYQDDQVLYVSLHRFEM 272
Query: 201 GTFWPNLRESEYDHIGEGIGKGYNFNIPLNKTHMKDADYMAVFHQVLLPMVAE 253
G ++P + +YD GEG G+G+N NI + DA+YM F QV++PM E
Sbjct: 273 GKYYPGTIQGQYDQTGEGKGEGFNCNITWPVGGVGDAEYMWAFEQVVMPMGRE 325
Score = 103 bits (258), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 66/94 (70%)
Query: 359 GMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKA 418
G+ D EY+ AF+QV++P+ +F P+LV++S+G+DA D +G C V+P Y H TH LK+
Sbjct: 305 GVGDAEYMWAFEQVVMPMGREFKPDLVIISSGFDAADGDTIGQCHVTPSCYGHMTHMLKS 364
Query: 419 LAQGRIILALEGGYNISSISYAMTLCTKALLGDP 452
LA+G + + LEGGYN+ +I+ + K L+G+P
Sbjct: 365 LARGNLCVVLEGGYNLDAIARSALSVAKVLIGEP 398
>sp|Q6NZM9|HDAC4_MOUSE Histone deacetylase 4 OS=Mus musculus GN=Hdac4 PE=1 SV=1
Length = 1076
Score = 165 bits (417), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 93/245 (37%), Positives = 138/245 (56%), Gaps = 21/245 (8%)
Query: 12 KELGLVQRCKFIQPREATQEEILKKHTIEQIELLATTEGSTDVDALEQLSSHYDAIYIHP 71
+E GL +C+ I+ R+AT EE+ H+ L T + ++L S ++++
Sbjct: 687 QETGLRGKCECIRGRKATLEELQTVHSEAHTLLYGTNPLNR-----QKLDSSLTSVFVR- 740
Query: 72 SSYKLSLLSAGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNGMAVIR 131
L G + + + N HSS + L+ G +ELV + GE+KNG AV+R
Sbjct: 741 -------LPCGG-VGVDSDTIWNEVHSSGA--ARLAVGCVVELVFKVATGELKNGFAVVR 790
Query: 132 PPGHHAMKSEYCGYCFFNNVALAAQHALDNTSVSRVLIVDWDVHHGQATQQMFYNDNRVV 191
PPGHHA +S G+C+FN+VA+AA+ +VS++LIVDWDVHHG TQQ FYND V+
Sbjct: 791 PPGHHAEESTPMGFCYFNSVAVAAKLLQQRLNVSKILIVDWDVHHGNGTQQAFYNDPNVL 850
Query: 192 YFSIHRYEHGTFWPNLRESEYDHIGEGIGKGYNFNIPLN---KTHMKDADYMAVFHQVLL 248
Y S+HRY+ G F+P D +G G G G+N N+ + M DA+Y+A F V++
Sbjct: 851 YMSLHRYDDGNFFPG--SGAPDEVGTGPGVGFNVNMAFTGGLEPPMGDAEYLAAFRTVVM 908
Query: 249 PMVAE 253
P+ E
Sbjct: 909 PIANE 913
Score = 99.8 bits (247), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 58/135 (42%), Positives = 86/135 (63%), Gaps = 8/135 (5%)
Query: 360 MSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVN--DPLGGCKVSPEAYAHFTHWLK 417
M D EY+AAF+ V++PIA +F P++VLVS+G+DA PLGG +S + + + T L
Sbjct: 894 MGDAEYLAAFRTVVMPIANEFAPDVVLVSSGFDAVEGHPTPLGGYNLSAKCFGYLTKQLM 953
Query: 418 ALAQGRIILALEGGYNISSISYAMTLCTKALLGDPL-PLLESDL--DINSSAVTSIKVII 474
LA GR++LALEGG+++++I A C ALLG+ L PL E L N++AV S++ ++
Sbjct: 954 GLAGGRLVLALEGGHDLTAICDASEACVSALLGNELEPLPEKVLHQRPNANAVHSMEKVM 1013
Query: 475 IINNNNSVYLYCSHR 489
I +S Y C R
Sbjct: 1014 DI---HSKYWRCLQR 1025
>sp|Q99P99|HDAC4_RAT Histone deacetylase 4 OS=Rattus norvegicus GN=Hdac4 PE=1 SV=2
Length = 1077
Score = 164 bits (416), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 93/245 (37%), Positives = 137/245 (55%), Gaps = 21/245 (8%)
Query: 12 KELGLVQRCKFIQPREATQEEILKKHTIEQIELLATTEGSTDVDALEQLSSHYDAIYIHP 71
+E GL +C+ I+ R+AT EE+ H+ L T + ++L S ++++
Sbjct: 688 QETGLRGKCECIRGRKATLEELQTVHSEAHTLLYGTNPLNR-----QKLDSSLTSVFVR- 741
Query: 72 SSYKLSLLSAGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNGMAVIR 131
L G + + + N HSS + L+ G +ELV + GE+KNG AV+R
Sbjct: 742 -------LPCGG-VGVDSDTIWNEVHSSGA--ARLAVGCVVELVFKVATGELKNGFAVVR 791
Query: 132 PPGHHAMKSEYCGYCFFNNVALAAQHALDNTSVSRVLIVDWDVHHGQATQQMFYNDNRVV 191
PPGHHA +S G+C+FN+VA+AA+ +VS++LIVDWDVHHG TQQ FYND V+
Sbjct: 792 PPGHHAEESTPMGFCYFNSVAIAAKLLQQRLNVSKILIVDWDVHHGNGTQQAFYNDPNVL 851
Query: 192 YFSIHRYEHGTFWPNLRESEYDHIGEGIGKGYNFNIPLN---KTHMKDADYMAVFHQVLL 248
Y S+HRY+ G F+P D +G G G G+N N+ M DA+Y+A F V++
Sbjct: 852 YMSLHRYDDGNFFPG--SGAPDEVGTGPGVGFNVNMAFTGGLDPPMGDAEYLAAFRTVVM 909
Query: 249 PMVAE 253
P+ E
Sbjct: 910 PIANE 914
Score = 100 bits (249), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 86/135 (63%), Gaps = 8/135 (5%)
Query: 360 MSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVN--DPLGGCKVSPEAYAHFTHWLK 417
M D EY+AAF+ V++PIA +F P++VLVS+G+DA PLGG +S + + + T L
Sbjct: 895 MGDAEYLAAFRTVVMPIANEFAPDVVLVSSGFDAVEGHPTPLGGYNLSAKCFGYLTKQLM 954
Query: 418 ALAQGRIILALEGGYNISSISYAMTLCTKALLGDPL-PLLESDL--DINSSAVTSIKVII 474
LA GRI+LALEGG+++++I A C ALLG+ L PL E L N++AV S++ ++
Sbjct: 955 GLAGGRIVLALEGGHDLTAICDASEACVSALLGNELEPLPEKVLHQRPNANAVHSMEKVM 1014
Query: 475 IINNNNSVYLYCSHR 489
I +S Y C R
Sbjct: 1015 GI---HSEYWRCLQR 1026
>sp|P56524|HDAC4_HUMAN Histone deacetylase 4 OS=Homo sapiens GN=HDAC4 PE=1 SV=3
Length = 1084
Score = 162 bits (411), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 91/245 (37%), Positives = 137/245 (55%), Gaps = 16/245 (6%)
Query: 12 KELGLVQRCKFIQPREATQEEILKKHTIEQIELLATTEGSTDVDALEQLSSHYDAIYIHP 71
+E GL +C+ I+ R+AT EE+ H+ L T + ++L ++++
Sbjct: 690 QETGLRGKCECIRGRKATLEELQTVHSEAHTLLYGTNPLNRQKLDSKKLLGSLASVFVR- 748
Query: 72 SSYKLSLLSAGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNGMAVIR 131
L G + + + N HS+ + L+ G +ELV + GE+KNG AV+R
Sbjct: 749 -------LPCGG-VGVDSDTIWNEVHSAGA--ARLAVGCVVELVFKVATGELKNGFAVVR 798
Query: 132 PPGHHAMKSEYCGYCFFNNVALAAQHALDNTSVSRVLIVDWDVHHGQATQQMFYNDNRVV 191
PPGHHA +S G+C+FN+VA+AA+ SVS++LIVDWDVHHG TQQ FY+D V+
Sbjct: 799 PPGHHAEESTPMGFCYFNSVAVAAKLLQQRLSVSKILIVDWDVHHGNGTQQAFYSDPSVL 858
Query: 192 YFSIHRYEHGTFWPNLRESEYDHIGEGIGKGYNFNIPLN---KTHMKDADYMAVFHQVLL 248
Y S+HRY+ G F+P D +G G G G+N N+ M DA+Y+A F V++
Sbjct: 859 YMSLHRYDDGNFFPG--SGAPDEVGTGPGVGFNVNMAFTGGLDPPMGDAEYLAAFRTVVM 916
Query: 249 PMVAE 253
P+ +E
Sbjct: 917 PIASE 921
Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 84/136 (61%), Gaps = 8/136 (5%)
Query: 360 MSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVN--DPLGGCKVSPEAYAHFTHWLK 417
M D EY+AAF+ V++PIA +F P++VLVS+G+DA PLGG +S + + T L
Sbjct: 902 MGDAEYLAAFRTVVMPIASEFAPDVVLVSSGFDAVEGHPTPLGGYNLSARCFGYLTKQLM 961
Query: 418 ALAQGRIILALEGGYNISSISYAMTLCTKALLG---DPLPLLESDLDINSSAVTSIKVII 474
LA GRI+LALEGG+++++I A C ALLG DPLP N++AV S++ ++
Sbjct: 962 GLAGGRIVLALEGGHDLTAICDASEACVSALLGNELDPLPEKVLQQRPNANAVRSMEKVM 1021
Query: 475 IINNNNSVYLYCSHRT 490
I +S Y C RT
Sbjct: 1022 EI---HSKYWRCLQRT 1034
>sp|P83038|HDAC4_CHICK Histone deacetylase 4 OS=Gallus gallus GN=HDAC4 PE=2 SV=1
Length = 1080
Score = 160 bits (404), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 91/245 (37%), Positives = 134/245 (54%), Gaps = 16/245 (6%)
Query: 12 KELGLVQRCKFIQPREATQEEILKKHTIEQIELLATTEGSTDVDALEQLSSHYDAIYIHP 71
+E GL +C+ I+ R+AT EE+ H+ L T + ++L ++++
Sbjct: 686 QETGLRGKCECIRGRKATLEELQTVHSEAHTLLYGTNPLNRQKLDSKKLLGSLTSMFVR- 744
Query: 72 SSYKLSLLSAGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNGMAVIR 131
L G + + + N HSS + L+ G IELV + GE+KNG AV+R
Sbjct: 745 -------LPCGG-VGVDSDTIWNEVHSSGA--ARLAVGCVIELVFKVATGELKNGFAVVR 794
Query: 132 PPGHHAMKSEYCGYCFFNNVALAAQHALDNTSVSRVLIVDWDVHHGQATQQMFYNDNRVV 191
PPGHHA +S G+C+FN+VA+AA+ +VS++LIVDWDVHHG TQQ FYND V+
Sbjct: 795 PPGHHAEESTPMGFCYFNSVAIAAKLLQQRLNVSKILIVDWDVHHGNGTQQAFYNDPNVL 854
Query: 192 YFSIHRYEHGTFWPNLRESEYDHIGEGIGKGYNFNIPLN---KTHMKDADYMAVFHQVLL 248
Y S+HRY+ G F+P D +G G G G+N N+ M D +Y+ F V++
Sbjct: 855 YISLHRYDDGNFFPG--SGAPDEVGTGAGVGFNVNMAFTGGLDPPMGDTEYLTAFRTVVM 912
Query: 249 PMVAE 253
P+ E
Sbjct: 913 PIANE 917
Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/135 (41%), Positives = 85/135 (62%), Gaps = 7/135 (5%)
Query: 360 MSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVN--DPLGGCKVSPEAYAHFTHWLK 417
M D EY+ AF+ V++PIA +F P++VLVS+G+DA PLGG +S + + + T L
Sbjct: 898 MGDTEYLTAFRTVVMPIANEFAPDVVLVSSGFDAVEGHPTPLGGYNLSAKCFGYLTKQLM 957
Query: 418 ALAQGRIILALEGGYNISSISYAMTLCTKALLG---DPLPLLESDLDINSSAVTSIKVII 474
LA GR++LALEGG+++++I A C ALLG DPLP N++AV S++ +I
Sbjct: 958 GLAGGRVVLALEGGHDLTAICDASEACVSALLGNELDPLPEKVLQQRANANAVHSMEKVI 1017
Query: 475 IINNN--NSVYLYCS 487
I++ +S+ Y S
Sbjct: 1018 EIHSKYWHSLQRYAS 1032
>sp|Q80ZH1|HDAC5_CRIGR Histone deacetylase 5 OS=Cricetulus griseus GN=HDAC5 PE=2 SV=1
Length = 1111
Score = 157 bits (398), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 90/246 (36%), Positives = 134/246 (54%), Gaps = 17/246 (6%)
Query: 12 KELGLVQRCKFIQPREATQEEILKKHTIEQIELLATTE-GSTDVDALEQLSSHYDAIYIH 70
+E GL+ +C+ I+ R+AT +EI H+ L T+ +D+ + L
Sbjct: 708 QETGLLSKCERIRGRKATLDEIQTVHSEYHTLLYGTSPLNRQKLDSKKLLG--------- 758
Query: 71 PSSYKLSLLSAGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNGMAVI 130
P S K+ + I + + N HSSS ++ G +EL + GE+KNG A+I
Sbjct: 759 PISQKMYAMLPCGGIGVDSDTVWNEMHSSSA--VRMAVGCLVELAFKVAAGELKNGFAII 816
Query: 131 RPPGHHAMKSEYCGYCFFNNVALAAQHALDNTSVSRVLIVDWDVHHGQATQQMFYNDNRV 190
RPPGHHA +S G+CFFN+VA+ A+ +V +VLIVDWD+HHG TQQ FY+D V
Sbjct: 817 RPPGHHAEESTAMGFCFFNSVAITAKLLQQKLNVGKVLIVDWDIHHGNGTQQAFYDDPSV 876
Query: 191 VYFSIHRYEHGTFWPNLRESEYDHIGEGIGKGYNFNIPLN---KTHMKDADYMAVFHQVL 247
+Y S+HRY++G F+P E +G G G GYN N+ + D +Y+ F V+
Sbjct: 877 LYISLHRYDNGNFFPGSGAPE--EVGGGPGMGYNVNVAWTGGVDPPIGDVEYLTAFRTVV 934
Query: 248 LPMVAE 253
+P+ E
Sbjct: 935 MPIAHE 940
Score = 95.9 bits (237), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 80/126 (63%), Gaps = 5/126 (3%)
Query: 360 MSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVN--DPLGGCKVSPEAYAHFTHWLK 417
+ D EY+ AF+ V++PIA++F+P++VLVSAG+DA PLGG V+ + H T L
Sbjct: 921 IGDVEYLTAFRTVVMPIAHEFSPDVVLVSAGFDAVEGHLSPLGGYSVTARCFGHLTRQLM 980
Query: 418 ALAQGRIILALEGGYNISSISYAMTLCTKALLGDPL-PLLESDLDINSS--AVTSIKVII 474
LA GR++LALEGG+++++I A C ALL L PL E+ L S AV +++ +I
Sbjct: 981 TLAGGRVVLALEGGHDLTAICDASEACVSALLSVELQPLDEAVLQQKPSINAVATLEKVI 1040
Query: 475 IINNNN 480
I + +
Sbjct: 1041 EIQSKH 1046
>sp|Q9UKV0|HDAC9_HUMAN Histone deacetylase 9 OS=Homo sapiens GN=HDAC9 PE=1 SV=2
Length = 1011
Score = 157 bits (397), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 94/246 (38%), Positives = 139/246 (56%), Gaps = 17/246 (6%)
Query: 12 KELGLVQRCKFIQPREATQEEILKKHTIEQIELLATTEGSTDVDALEQLSSHYDAIYIHP 71
+E GL+ +C+ IQ R+A+ EEI H+ E LL G+ +D ++L I +
Sbjct: 669 QETGLLNKCERIQGRKASLEEIQLVHS-EHHSLLY---GTNPLDG-QKLDPR---ILLGD 720
Query: 72 SSYKL-SLLSAGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNGMAVI 130
S K S L G + + + N HSS + ++ G IEL + GE+KNG AV+
Sbjct: 721 DSQKFFSSLPCGG-LGVDSDTIWNELHSSGA--ARMAVGCVIELASKVASGELKNGFAVV 777
Query: 131 RPPGHHAMKSEYCGYCFFNNVALAAQHALDNTSVSRVLIVDWDVHHGQATQQMFYNDNRV 190
RPPGHHA +S G+CFFN+VA+ A++ D ++S++LIVD DVHHG TQQ FY D +
Sbjct: 778 RPPGHHAEESTAMGFCFFNSVAITAKYLRDQLNISKILIVDLDVHHGNGTQQAFYADPSI 837
Query: 191 VYFSIHRYEHGTFWPNLRESEYDHIGEGIGKGYNFNIPLN---KTHMKDADYMAVFHQVL 247
+Y S+HRY+ G F+P + +G G+G+GYN NI M D +Y+ F ++
Sbjct: 838 LYISLHRYDEGNFFPG--SGAPNEVGTGLGEGYNINIAWTGGLDPPMGDVEYLEAFRTIV 895
Query: 248 LPMVAE 253
P+ E
Sbjct: 896 KPVAKE 901
Score = 103 bits (257), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 80/124 (64%), Gaps = 5/124 (4%)
Query: 360 MSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVN--DPLGGCKVSPEAYAHFTHWLK 417
M D EY+ AF+ ++ P+A +F+P++VLVSAG+DA PLGG KV+ + + H T L
Sbjct: 882 MGDVEYLEAFRTIVKPVAKEFDPDMVLVSAGFDALEGHTPPLGGYKVTAKCFGHLTKQLM 941
Query: 418 ALAQGRIILALEGGYNISSISYAMTLCTKALLGDPLPLLESDL---DINSSAVTSIKVII 474
LA GR++LALEGG+++++I A C ALLG+ L L D+ N +AV S++ II
Sbjct: 942 TLADGRVVLALEGGHDLTAICDASEACVNALLGNELEPLAEDILHQSPNMNAVISLQKII 1001
Query: 475 IINN 478
I +
Sbjct: 1002 EIQS 1005
>sp|P56523|CLR3_SCHPO Histone deacetylase clr3 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=clr3 PE=1 SV=1
Length = 687
Score = 152 bits (385), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 86/235 (36%), Positives = 125/235 (53%), Gaps = 34/235 (14%)
Query: 23 IQPREATQEEILKKHTIEQIELLATTEGST--DVDALEQLSSHYDAIYIHPSSYKLSLLS 80
I REAT EE+L+ H+ E + + TE + D+ LE++S D++Y +
Sbjct: 110 IPAREATLEELLQVHSQEMYDRVTNTEKMSHEDLANLEKIS---DSLYYN---------- 156
Query: 81 AGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNGMAVIRPPGHHAMKS 140
+ S + L+ GS IE + G++KN AV+RPPGHHA
Sbjct: 157 -----------------NESAFCARLACGSAIETCTAVVTGQVKNAFAVVRPPGHHAEPH 199
Query: 141 EYCGYCFFNNVALAAQHALDN--TSVSRVLIVDWDVHHGQATQQMFYNDNRVVYFSIHRY 198
+ G+C FNNV++ A+ L + RVLIVDWD+HHG TQ FY+D V+Y S+HRY
Sbjct: 200 KPGGFCLFNNVSVTARSMLQRFPDKIKRVLIVDWDIHHGNGTQMAFYDDPNVLYVSLHRY 259
Query: 199 EHGTFWPNLRESEYDHIGEGIGKGYNFNIPLNKTHMKDADYMAVFHQVLLPMVAE 253
E+G F+P ++ GEG G G NIP + M D DY+ F +V++P+ E
Sbjct: 260 ENGRFYPGTNYGCAENCGEGPGLGRTVNIPWSCAGMGDGDYIYAFQRVVMPVAYE 314
Score = 105 bits (262), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 67/94 (71%)
Query: 359 GMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKA 418
GM D +YI AFQ+V++P+AY+F+P+LV+VS G+DA D +G ++P AYAH T L
Sbjct: 294 GMGDGDYIYAFQRVVMPVAYEFDPDLVIVSCGFDAAAGDHIGQFLLTPAAYAHMTQMLMG 353
Query: 419 LAQGRIILALEGGYNISSISYAMTLCTKALLGDP 452
LA G++ ++LEGGYN+ SIS + ++LLG P
Sbjct: 354 LADGKVFISLEGGYNLDSISTSALAVAQSLLGIP 387
>sp|Q8WUI4|HDAC7_HUMAN Histone deacetylase 7 OS=Homo sapiens GN=HDAC7 PE=1 SV=2
Length = 952
Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 131/245 (53%), Gaps = 15/245 (6%)
Query: 12 KELGLVQRCKFIQPREATQEEILKKHTIEQIELLATTEGSTDVDALEQLSSHYDAIYIHP 71
+E GL +C+ ++ R+A+ EE+ H+ + L T + L +L +
Sbjct: 556 QERGLRSQCECLRGRKASLEELQSVHSERHVLLYGT-------NPLSRLKLDNGKLAGLL 608
Query: 72 SSYKLSLLSAGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNGMAVIR 131
+ +L G + + + N HSS+ + +AGS +L + E+KNG AV+R
Sbjct: 609 AQRMFVMLPCGG-VGVDTDTIWNELHSSNA--ARWAAGSVTDLAFKVASRELKNGFAVVR 665
Query: 132 PPGHHAMKSEYCGYCFFNNVALAAQHALDNTSVSRVLIVDWDVHHGQATQQMFYNDNRVV 191
PPGHHA S G+CFFN+VA+A + + S++LIVDWDVHHG TQQ FY D V+
Sbjct: 666 PPGHHADHSTAMGFCFFNSVAIACRQLQQQSKASKILIVDWDVHHGNGTQQTFYQDPSVL 725
Query: 192 YFSIHRYEHGTFWPNLRESEYDHIGEGIGKGYNFNIPLN---KTHMKDADYMAVFHQVLL 248
Y S+HR++ G F+P D +G G G+G+N N+ M D +Y+A F V++
Sbjct: 726 YISLHRHDDGNFFPG--SGAVDEVGAGSGEGFNVNVAWAGGLDPPMGDPEYLAAFRIVVM 783
Query: 249 PMVAE 253
P+ E
Sbjct: 784 PIARE 788
Score = 101 bits (252), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/135 (42%), Positives = 83/135 (61%), Gaps = 8/135 (5%)
Query: 360 MSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVN--DPLGGCKVSPEAYAHFTHWLK 417
M DPEY+AAF+ V++PIA +F+P+LVLVSAG+DA PLGG VS + + + T L
Sbjct: 769 MGDPEYLAAFRIVVMPIAREFSPDLVLVSAGFDAAEGHPAPLGGYHVSAKCFGYMTQQLM 828
Query: 418 ALAQGRIILALEGGYNISSISYAMTLCTKALLG---DPLPLLESDLDINSSAVTSIKVII 474
LA G ++LALEGG+++++I A C ALLG DPL N +A+ S++ +I
Sbjct: 829 NLAGGAVVLALEGGHDLTAICDASEACVAALLGNRVDPLSEEGWKQKPNLNAIRSLEAVI 888
Query: 475 IINNNNSVYLYCSHR 489
+ +S Y C R
Sbjct: 889 RV---HSKYWGCMQR 900
>sp|Q8C2B3|HDAC7_MOUSE Histone deacetylase 7 OS=Mus musculus GN=Hdac7 PE=1 SV=2
Length = 938
Score = 150 bits (378), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 131/245 (53%), Gaps = 15/245 (6%)
Query: 12 KELGLVQRCKFIQPREATQEEILKKHTIEQIELLATTEGSTDVDALEQLSSHYDAIYIHP 71
+E GL +C+ ++ R+A+ EE+ H+ + L T + L +L +
Sbjct: 543 QERGLRSQCECLRGRKASLEELQSVHSERHVLLYGT-------NPLSRLKLDNGKLTGLL 595
Query: 72 SSYKLSLLSAGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNGMAVIR 131
+ +L G + + + N HSS+ + +AGS +L + E+KNG AV+R
Sbjct: 596 AQRTFVMLPCGG-VGVDTDTIWNELHSSNA--ARWAAGSVTDLAFKVASRELKNGFAVVR 652
Query: 132 PPGHHAMKSEYCGYCFFNNVALAAQHALDNTSVSRVLIVDWDVHHGQATQQMFYNDNRVV 191
PPGHHA S G+CFFN+VA+A + + S++LIVDWDVHHG TQQ FY D V+
Sbjct: 653 PPGHHADHSTAMGFCFFNSVAIACRQLQQHGKASKILIVDWDVHHGNGTQQTFYQDPSVL 712
Query: 192 YFSIHRYEHGTFWPNLRESEYDHIGEGIGKGYNFNIPLN---KTHMKDADYMAVFHQVLL 248
Y S+HR++ G F+P D +G G G+G+N N+ M D +Y+A F V++
Sbjct: 713 YISLHRHDDGNFFPG--SGAVDEVGTGSGEGFNVNVAWAGGLDPPMGDPEYLAAFRIVVM 770
Query: 249 PMVAE 253
P+ E
Sbjct: 771 PIARE 775
Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/135 (42%), Positives = 81/135 (60%), Gaps = 8/135 (5%)
Query: 360 MSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVND--PLGGCKVSPEAYAHFTHWLK 417
M DPEY+AAF+ V++PIA +F P+LVLVSAG+DA PLGG VS + + + T L
Sbjct: 756 MGDPEYLAAFRIVVMPIAREFAPDLVLVSAGFDAAEGHPAPLGGYHVSAKCFGYMTQQLM 815
Query: 418 ALAQGRIILALEGGYNISSISYAMTLCTKALLG---DPLPLLESDLDINSSAVTSIKVII 474
LA G ++LALEGG+++++I A C ALLG DPL N SA+ S++ ++
Sbjct: 816 NLAGGAVVLALEGGHDLTAICDASEACVAALLGNKVDPLSEESWKQKPNLSAIRSLEAVV 875
Query: 475 IINNNNSVYLYCSHR 489
++ Y C R
Sbjct: 876 RVHRK---YWGCMQR 887
>sp|Q9Z2V6|HDAC5_MOUSE Histone deacetylase 5 OS=Mus musculus GN=Hdac5 PE=1 SV=2
Length = 1113
Score = 147 bits (370), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 91/245 (37%), Positives = 135/245 (55%), Gaps = 15/245 (6%)
Query: 12 KELGLVQRCKFIQPREATQEEILKKHTIEQIELLATTEGSTDVDALEQLSSHYDAIYIHP 71
+E GL+ +C+ I+ R+AT +EI H+ L T+ + ++L S + P
Sbjct: 710 QETGLLGKCERIRGRKATLDEIQTVHSEYHTLLYGTSPLNR-----QKLDSKK---LLGP 761
Query: 72 SSYKLSLLSAGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNGMAVIR 131
S K+ + I + + N HSSS ++ G +EL + GE+KNG A+IR
Sbjct: 762 ISQKMYAMLPCGGIGVDSDTVWNEMHSSSA--VRMAVGCLVELAFKVAAGELKNGFAIIR 819
Query: 132 PPGHHAMKSEYCGYCFFNNVALAAQHALDNTSVSRVLIVDWDVHHGQATQQMFYNDNRVV 191
PPGHHA +S G+CFFN+VA+ A+ SV +VLIVDWD+HHG TQQ FYND V+
Sbjct: 820 PPGHHAEESTAMGFCFFNSVAITAKLLQQKLSVGKVLIVDWDIHHGNGTQQAFYNDPSVL 879
Query: 192 YFSIHRYEHGTFWPNLRESEYDHIGEGIGKGYNFNIPLN---KTHMKDADYMAVFHQVLL 248
Y S+HRY++G F+P + +G G G GYN N+ + D +Y+ F V++
Sbjct: 880 YISLHRYDNGNFFPG--SGAPEEVGGGPGVGYNVNVAWTGGVDPPIGDVEYLTAFRTVVM 937
Query: 249 PMVAE 253
P+ E
Sbjct: 938 PIAQE 942
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 79/126 (62%), Gaps = 5/126 (3%)
Query: 360 MSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVN--DPLGGCKVSPEAYAHFTHWLK 417
+ D EY+ AF+ V++PIA +F+P++VLVSAG+DA PLGG V+ + H T L
Sbjct: 923 IGDVEYLTAFRTVVMPIAQEFSPDVVLVSAGFDAVEGHLSPLGGYSVTARCFGHLTRQLM 982
Query: 418 ALAQGRIILALEGGYNISSISYAMTLCTKALLGDPL-PLLESDLDINSS--AVTSIKVII 474
LA GR++LALEGG+++++I A C ALL L PL E+ L S AV +++ +I
Sbjct: 983 TLAGGRVVLALEGGHDLTAICDASEACVSALLSVELQPLDEAVLQQKPSVNAVATLEKVI 1042
Query: 475 IINNNN 480
I + +
Sbjct: 1043 EIQSKH 1048
>sp|Q613L4|HDA4_CAEBR Histone deacetylase 4 OS=Caenorhabditis briggsae GN=hda-4 PE=3 SV=1
Length = 892
Score = 147 bits (370), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 96/149 (64%), Gaps = 4/149 (2%)
Query: 106 LSAGSTIELVDNICRGEIKNGMAVIRPPGHHAMKSEYCGYCFFNNVALAAQ--HALDNTS 163
L+AG+ IEL + G +KNG A IRPPGHHA + G+CFFNNVA+ A+ A
Sbjct: 598 LAAGTLIELSSQVAEGRLKNGFACIRPPGHHAEAEQALGFCFFNNVAVTAKVLQAKYPVQ 657
Query: 164 VSRVLIVDWDVHHGQATQQMFYNDNRVVYFSIHRYEHGTFWPNLRESEYDHIGEGIGKGY 223
+++ I+DWDVHHG TQ F +D V+Y S+HR+++G F+P IG+G GKG+
Sbjct: 658 CAKIAIIDWDVHHGNGTQLSFDDDPNVLYMSLHRHDNGNFFPG--TGSVTEIGKGAGKGF 715
Query: 224 NFNIPLNKTHMKDADYMAVFHQVLLPMVA 252
+ NIP + MKDA+Y+A + V+ P++A
Sbjct: 716 SVNIPFSGGVMKDAEYLAAWRTVVEPVLA 744
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 78/124 (62%), Gaps = 7/124 (5%)
Query: 360 MSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVN--DPLGGCKVSPEAYAHFTHWLK 417
M D EY+AA++ V+ P+ F P+ +LVSAG+DAC + LGG +++PE + + T L
Sbjct: 726 MKDAEYLAAWRTVVEPVLASFCPDFILVSAGFDACHGHVNALGGYEITPEMFGYMTKCLL 785
Query: 418 ALAQGRIILALEGGYNISSISYAMTLCTKALLG---DPLPLLESDLD--INSSAVTSIKV 472
+ A G+++LALEGGYN+ SIS A C +AL+G D L L+ N SA+ +++
Sbjct: 786 SYANGKVVLALEGGYNLDSISAAAEQCVQALIGESDDAGRLCTDSLENLPNQSALETLQK 845
Query: 473 IIII 476
+I I
Sbjct: 846 VIAI 849
>sp|Q9UQL6|HDAC5_HUMAN Histone deacetylase 5 OS=Homo sapiens GN=HDAC5 PE=1 SV=2
Length = 1122
Score = 144 bits (364), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 90/246 (36%), Positives = 134/246 (54%), Gaps = 17/246 (6%)
Query: 12 KELGLVQRCKFIQPREATQEEILKKHTIEQIELLATTE-GSTDVDALEQLSSHYDAIYIH 70
+E GL+ +C+ I+ R+AT +EI H+ L T+ +D+ + L
Sbjct: 719 QETGLLSKCERIRGRKATLDEIQTVHSEYHTLLYGTSPLNRQKLDSKKLLG--------- 769
Query: 71 PSSYKLSLLSAGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNGMAVI 130
P S K+ + I + + N HSSS ++ G +EL + GE+KNG A+I
Sbjct: 770 PISQKMYAVLPCGGIGVDSDTVWNEMHSSSA--VRMAVGCLLELAFKVAAGELKNGFAII 827
Query: 131 RPPGHHAMKSEYCGYCFFNNVALAAQHALDNTSVSRVLIVDWDVHHGQATQQMFYNDNRV 190
RPPGHHA +S G+CFFN+VA+ A+ +V +VLIVDWD+HHG TQQ FYND V
Sbjct: 828 RPPGHHAEESTAMGFCFFNSVAITAKLLQQKLNVGKVLIVDWDIHHGNGTQQAFYNDPSV 887
Query: 191 VYFSIHRYEHGTFWPNLRESEYDHIGEGIGKGYNFNIPLN---KTHMKDADYMAVFHQVL 247
+Y S+HRY++G F+P + +G G G GYN N+ + D +Y+ F V+
Sbjct: 888 LYISLHRYDNGNFFPG--SGAPEEVGGGPGVGYNVNVAWTGGVDPPIGDVEYLTAFRTVV 945
Query: 248 LPMVAE 253
+P+ E
Sbjct: 946 MPIAHE 951
Score = 95.9 bits (237), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 81/126 (64%), Gaps = 5/126 (3%)
Query: 360 MSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVN--DPLGGCKVSPEAYAHFTHWLK 417
+ D EY+ AF+ V++PIA++F+P++VLVSAG+DA PLGG V+ + H T L
Sbjct: 932 IGDVEYLTAFRTVVMPIAHEFSPDVVLVSAGFDAVEGHLSPLGGYSVTARCFGHLTRQLM 991
Query: 418 ALAQGRIILALEGGYNISSISYAMTLCTKALLGDPL-PLLESDLD--INSSAVTSIKVII 474
LA GR++LALEGG+++++I A C ALL L PL E+ L N +AV +++ +I
Sbjct: 992 TLAGGRVVLALEGGHDLTAICDASEACVSALLSVELQPLDEAVLQQKPNINAVATLEKVI 1051
Query: 475 IINNNN 480
I + +
Sbjct: 1052 EIQSKH 1057
>sp|Q5R902|HDAC5_PONAB Histone deacetylase 5 OS=Pongo abelii GN=HDAC5 PE=2 SV=1
Length = 1122
Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 91/246 (36%), Positives = 134/246 (54%), Gaps = 17/246 (6%)
Query: 12 KELGLVQRCKFIQPREATQEEILKKHTIEQIELLATTE-GSTDVDALEQLSSHYDAIYIH 70
+E GL+ +C+ I+ R+AT +EI H+ L T+ VD+ + L
Sbjct: 719 QETGLLSKCERIRGRKATLDEIQTVHSEYHTLLYGTSPLNRQKVDSKKLLG--------- 769
Query: 71 PSSYKLSLLSAGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNGMAVI 130
P S K+ + I + + N HSSS ++ G +EL + GE+KNG A+I
Sbjct: 770 PISQKMYAVLPCGGIGVDSDTVWNEMHSSSA--VRMAVGCLLELAFKVAAGELKNGFAII 827
Query: 131 RPPGHHAMKSEYCGYCFFNNVALAAQHALDNTSVSRVLIVDWDVHHGQATQQMFYNDNRV 190
RPPGHHA +S G+CFFN+VA+ A+ +V +VLIVDWD+HHG TQQ FYND V
Sbjct: 828 RPPGHHAEESTAMGFCFFNSVAITAKLLQQKLNVGKVLIVDWDIHHGNGTQQAFYNDPSV 887
Query: 191 VYFSIHRYEHGTFWPNLRESEYDHIGEGIGKGYNFNIPL---NKTHMKDADYMAVFHQVL 247
+Y S+HRY++G F+P + +G G G GYN N+ + D +Y+ F V+
Sbjct: 888 LYISLHRYDNGNFFPG--SGAPEEVGGGPGVGYNVNVAWIGGVDPPIGDVEYLTAFRTVV 945
Query: 248 LPMVAE 253
+P+ E
Sbjct: 946 MPIAHE 951
Score = 95.9 bits (237), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 81/126 (64%), Gaps = 5/126 (3%)
Query: 360 MSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVN--DPLGGCKVSPEAYAHFTHWLK 417
+ D EY+ AF+ V++PIA++F+P++VLVSAG+DA PLGG V+ + H T L
Sbjct: 932 IGDVEYLTAFRTVVMPIAHEFSPDVVLVSAGFDAVEGHLSPLGGYSVTARCFGHLTRQLM 991
Query: 418 ALAQGRIILALEGGYNISSISYAMTLCTKALLGDPL-PLLESDLD--INSSAVTSIKVII 474
LA GR++LALEGG+++++I A C ALL L PL E+ L N +AV +++ +I
Sbjct: 992 TLAGGRVVLALEGGHDLTAICDASEACVSALLSVELQPLDEAVLQQKPNINAVATLEKVI 1051
Query: 475 IINNNN 480
I + +
Sbjct: 1052 EIQSKH 1057
>sp|O17323|HDA4_CAEEL Histone deacetylase 4 OS=Caenorhabditis elegans GN=hda-4 PE=1 SV=3
Length = 869
Score = 136 bits (342), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 93/157 (59%), Gaps = 4/157 (2%)
Query: 98 SSSYKLSLLSAGSTIELVDNICRGEIKNGMAVIRPPGHHAMKSEYCGYCFFNNVALAAQ- 156
+S+ + L+AG+ IEL + G +KNG A IRPPGHHA + G+CFFNNVA+A +
Sbjct: 570 ASTQTAARLAAGTLIELSSQVAEGRLKNGFACIRPPGHHAEHEQAMGFCFFNNVAVAVKV 629
Query: 157 -HALDNTSVSRVLIVDWDVHHGQATQQMFYNDNRVVYFSIHRYEHGTFWPNLRESEYDHI 215
+++ I+DWDVHHG TQ F ND V+Y S+HR++ G F+P +
Sbjct: 630 LQTKYPAQCAKIAIIDWDVHHGNGTQLSFENDPNVLYMSLHRHDKGNFFPGT--GSVTEV 687
Query: 216 GEGIGKGYNFNIPLNKTHMKDADYMAVFHQVLLPMVA 252
G+ KG N+P + M+D +Y+A + V+ P++A
Sbjct: 688 GKNDAKGLTVNVPFSGDVMRDPEYLAAWRTVIEPVMA 724
Score = 98.2 bits (243), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 78/124 (62%), Gaps = 7/124 (5%)
Query: 360 MSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDP--LGGCKVSPEAYAHFTHWLK 417
M DPEY+AA++ VI P+ F P+ ++VSAG+DAC P LGG +V+PE + + T L
Sbjct: 706 MRDPEYLAAWRTVIEPVMASFCPDFIIVSAGFDACHGHPNALGGYEVTPEMFGYMTKSLL 765
Query: 418 ALAQGRIILALEGGYNISSISYAMTLCTKALLGDP-----LPLLESDLDINSSAVTSIKV 472
A G+++LALEGGY++ SIS A C +AL+G+ L + + N SAV +++
Sbjct: 766 NYASGKVVLALEGGYDLKSISEAAQQCVQALIGESDDAGRLSSVALESLPNPSAVETLQK 825
Query: 473 IIII 476
+I I
Sbjct: 826 VIAI 829
>sp|Q8GXJ1|HDA15_ARATH Histone deacetylase 15 OS=Arabidopsis thaliana GN=HDA15 PE=2 SV=2
Length = 552
Score = 119 bits (298), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 114/234 (48%), Gaps = 37/234 (15%)
Query: 19 RCKFIQPREATQEEILKKHTIEQIELLATTEGSTDVDALEQLSSHYDAIYIHPSSYKLSL 78
RC I RE T++E+ HT E ++ VD QL Y + + Y
Sbjct: 194 RCLPINAREITKQELQMVHTSEHVDA---------VDTTSQLLYSYFTSDTYANEY---- 240
Query: 79 LSAGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNGMAVIRPPGHHAM 138
S + + L+AG +L +I G +KNG A++RPPGHHA
Sbjct: 241 ---------------------SARAARLAAGLCADLATDIFTGRVKNGFALVRPPGHHAG 279
Query: 139 KSEYCGYCFFNNVALAAQHALDNTSVSRVLIVDWDVHHGQATQQMFYNDNRVVYFSIHRY 198
G+C NN A+AA A +VLIVDWDVHHG TQ++F + V+Y S+HR+
Sbjct: 280 VRHAMGFCLHNNAAVAALVAQ-AAGAKKVLIVDWDVHHGNGTQEIFEQNKSVLYISLHRH 338
Query: 199 EHGTFWPNLRESEYDHIGEGIGKGYNFNIPLNKTHMKDADYMAVFHQVLLPMVA 252
E G F+P + D +G G+GY N+P + + D DY+ F V+LP+ +
Sbjct: 339 EGGNFYPGTGAA--DEVGSNGGEGYCVNVPWSCGGVGDKDYIFAFQHVVLPIAS 390
Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/93 (49%), Positives = 63/93 (67%)
Query: 359 GMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKA 418
G+ D +YI AFQ V+LPIA F+P+ V++SAG+DA DPLG C V+P Y+ T L
Sbjct: 371 GVGDKDYIFAFQHVVLPIASAFSPDFVIISAGFDAARGDPLGCCDVTPAGYSRMTQMLGD 430
Query: 419 LAQGRIILALEGGYNISSISYAMTLCTKALLGD 451
L G++++ LEGGYN+ SIS + T K LLG+
Sbjct: 431 LCGGKMLVILEGGYNLRSISASATAVIKVLLGE 463
>sp|O27262|Y1194_METTH Uncharacterized protein MTH_1194 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_1194 PE=3 SV=1
Length = 331
Score = 113 bits (283), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 114/238 (47%), Gaps = 49/238 (20%)
Query: 21 KFIQPREATQEEILKKHT---IEQIELLATTEGS-TDVDALEQLSSHYDAIYIHPSSYKL 76
+F++P A ++IL H+ +E +E+ A G D D Y+ P S+ +
Sbjct: 39 RFVEPGMAGIDDILMVHSSTHVEYLEVFAGRGGGWLDYDT-----------YMTPESFSV 87
Query: 77 SLLSAGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNGMAVIRPPGHH 136
+ LSAG + R+G SY L RPPGHH
Sbjct: 88 ARLSAGGAMLAAEEALRDGW---SYSLG--------------------------RPPGHH 118
Query: 137 AMKSEYCGYCFFNNVALAAQHALDNTSVSRVLIVDWDVHHGQATQQMFYNDNRVVYFSIH 196
A G+C FNN+A+A +HA N VSR L++D+DVHHG T +FY D V+Y SIH
Sbjct: 119 ATYDRSMGFCIFNNIAIAIEHARRNLGVSRPLVLDFDVHHGNGTSSIFYRDRDVMYISIH 178
Query: 197 RYEHGTFWPNLRESEYDHIGEGIGKGYNFNIPLNKTHMKDADYMAVFHQVLLPMVAEG 254
+ + T +P D G G G+G+N NIP+ + + +Y+ + ++LP V EG
Sbjct: 179 Q-DPRTLFPGT--GFIDETGSGEGEGFNLNIPMPRGS-GNREYLWIL-GMILPAVLEG 231
Score = 42.4 bits (98), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 358 KGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLK 417
+G + EY+ ++ + F P+++ VSAG+DA DPL V E ++ + W
Sbjct: 210 RGSGNREYLWILGMILPAVLEGFRPDMIFVSAGFDAHRRDPLAEIMVDEEFFS-WIGWFI 268
Query: 418 ALAQGRIILALEGGYNISSISYAMTLCTKALLGD 451
LEGGY+ ++ + + L G+
Sbjct: 269 HQTGLPCTAVLEGGYDPEALGRSNIAFMRGLDGE 302
>sp|O30107|Y130_ARCFU Uncharacterized protein AF_0130 OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=AF_0130 PE=3 SV=1
Length = 359
Score = 113 bits (283), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 115/249 (46%), Gaps = 48/249 (19%)
Query: 9 DPCKELGLVQ--RCKFIQPREATQEEILKKHTIEQIELLATTEGSTDVDALEQLSSHYDA 66
D +E G+ + R ++P +A+ E++L+ HT E + L
Sbjct: 32 DQLREEGIFESERIVLLEPFKASLEDVLEVHTEEYVRFLEM------------------- 72
Query: 67 IYIHPSSYKLSLLSAGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNG 126
S K ++ + I + + +LL+AG I + E +N
Sbjct: 73 -----ESKKGGIIDFDTNIPV-----------GVFDRALLAAGGAIRAAQAVLNKECENA 116
Query: 127 MAVIRPPGHHAMKSEYCGYCFFNNVALAAQHALDNTSVSRVLIVDWDVHHGQATQQMFYN 186
A+IRPPGHHA G+C+ NN+A+ + L R+ I+DWD HHG TQ++FYN
Sbjct: 117 FAMIRPPGHHAKPYIGAGFCYLNNMAIMVKWLL-KQGFERIAILDWDAHHGDGTQEIFYN 175
Query: 187 DNRVVYFSIHRYE--HGTFWPNLRESEYDHIGEGIGKGYNFNIPLNKTHMKDADYMAVFH 244
D+RV++ S H+ GT +P + G G G+GY NIPL D YM V
Sbjct: 176 DDRVLFISTHQMPLYPGTGYP-------EECGTGKGEGYTVNIPL-PPGTGDEGYMMVID 227
Query: 245 QVLLPMVAE 253
+++ P+V E
Sbjct: 228 EIIEPVVNE 236
Score = 53.5 bits (127), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 359 GMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKA 418
G D Y+ ++I P+ +F P+ + +SAG D DP+ ++ YA A
Sbjct: 216 GTGDEGYMMVIDEIIEPVVNEFKPQFIAISAGQDNHFTDPITSLALTARGYAEMMRRAVA 275
Query: 419 LAQ----GRIILALEGGYNISS 436
+A+ GR++ LEGGY++
Sbjct: 276 MAEKHCDGRLVAVLEGGYSVEG 297
>sp|Q94EJ2|HDA8_ARATH Histone deacetylase 8 OS=Arabidopsis thaliana GN=HDA8 PE=2 SV=1
Length = 377
Score = 112 bits (281), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 73/204 (35%), Positives = 117/204 (57%), Gaps = 13/204 (6%)
Query: 67 IYIHPSSYKLSLLSAGSTIELRRNQKRNGSHSS--SYKLSLLSAGSTIELVDNI--CRGE 122
+ H S Y L+ A + E R + G+ S S++ +LL+AG+T+ + +I C G+
Sbjct: 76 LMFHTSEYIEKLVEADKSGE--RCEIAAGTFMSPGSWEAALLAAGTTLSAMQHILDCHGK 133
Query: 123 IKNGMAVIRPPGHHAMKSEYCGYCFFNNVALAAQHALDNTSVSRVLIVDWDVHHGQATQQ 182
I A++RPPGHH+ ++ GYCF NN ALA + AL++ S SRV ++D DVH+G T +
Sbjct: 134 IA--YALVRPPGHHSQPTQADGYCFLNNAALAVKLALNSGSCSRVAVIDIDVHYGNGTAE 191
Query: 183 MFYNDNRVVYFSIHRYEHGTFWPN-LRESEYDHIGEGIGKGYNFNIPL-NKTHMKDADYM 240
FY ++V+ S+H HG++ + ++ D +GE +G GYN N+PL N T D Y
Sbjct: 192 GFYTSDKVLTVSLH-MNHGSWGSSHPQKGSIDELGEDVGLGYNLNVPLPNGT--GDRGYE 248
Query: 241 AVFHQVLLPMVAEGGYCLKSLAEG 264
+++++P V G + L G
Sbjct: 249 YAMNELVVPAVRRFGPDMVVLVVG 272
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 72/144 (50%), Gaps = 15/144 (10%)
Query: 338 DVPLLFLLQIPGCYPHRTKSKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVND 397
DV L + L +P P+ T +G Y A ++++P +F P++V++ G D+ D
Sbjct: 227 DVGLGYNLNVP--LPNGTGDRG-----YEYAMNELVVPAVRRFGPDMVVLVVGQDSSAFD 279
Query: 398 PLGGCKVSPEAYAHFTHWLKALAQ----GRIILALEGGYNISSISYAMTLCTKALLGDPL 453
P G ++ Y ++ +A+ GR+++ EGGY+++ +Y + + +L P
Sbjct: 280 PNGRQSLTMNGYRRIGQIMRGVAEEHSHGRLLMVQEGGYHVTYAAYCLHAMLEGVLKIPE 339
Query: 454 PLLESDL----DINSSAVTSIKVI 473
P L + + ++AV +++ I
Sbjct: 340 PHLSDPIAYYPEEEANAVAAVESI 363
>sp|Q70I53|HDAH_ALCSD Histone deacetylase-like amidohydrolase OS=Alcaligenes sp. (strain
DSM 11172) GN=hdaH PE=1 SV=3
Length = 369
Score = 111 bits (278), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 86/151 (56%), Gaps = 5/151 (3%)
Query: 98 SSSYKLSLLSAGSTIELVDNICRGEIKNGMAVIRPPGHHAMKSEYCGYCFFNNVALAAQH 157
+ +++ LSAG +EL + GE+ G A++ PPGHHA + G+C FNN ++AA +
Sbjct: 105 NGGLEIARLSAGGAVELTRRVATGELSAGYALVNPPGHHAPHNAAMGFCIFNNTSVAAGY 164
Query: 158 ALDNTSVSRVLIVDWDVHHGQATQQMFYNDNRVVYFSIHRYEHGTFWPNLRESEYDHIGE 217
A + RV I+DWDVHHG TQ +++ND V+ S+H +H F P+ S G
Sbjct: 165 ARAVLGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLH--QHLCFPPDSGYSTER--GA 220
Query: 218 GIGKGYNFNIPLNKTHMKDADYMAVFHQVLL 248
G G GYN N+PL +A Y+ QV+L
Sbjct: 221 GNGHGYNINVPLPPGS-GNAAYLHAMDQVVL 250
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 359 GMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWL-- 416
G + Y+ A QV+L + P+L++V +G+DA + DPL V+ + +
Sbjct: 235 GSGNAAYLHAMDQVVLHALRAYRPQLIIVGSGFDASMLDPLARMMVTADGFRQMARRTID 294
Query: 417 --KALAQGRIILALEGGYN 433
+ GRI+ EGGY+
Sbjct: 295 CAADICDGRIVFVQEGGYS 313
>sp|Q941D6|HDA14_ARATH Histone deacetylase 14 OS=Arabidopsis thaliana GN=HDA14 PE=2 SV=1
Length = 423
Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 89/157 (56%), Gaps = 11/157 (7%)
Query: 98 SSSYKLSLLSAGSTIELVDNICRGEIKN-----GMAVIRPPGHHAMKSEYCGYCFFNNVA 152
S++++ SL++AG+ + LVD++ + G A+IRPPGHHA+ G+C F NVA
Sbjct: 159 STTFQDSLIAAGAGMALVDSVIAASRNSVDPPIGFALIRPPGHHAVPKGPMGFCVFGNVA 218
Query: 153 LAAQHALDNTSVSRVLIVDWDVHHGQATQQMFYNDNRVVYFSIHRYEHGTFWPNLRESEY 212
+AA+HA + R+ I+D+DVHHG T F D + + S H + G++ + S+
Sbjct: 219 IAARHAQRTHGLKRIFIIDFDVHHGNGTNDAFTEDPDIFFLSTH--QDGSYPGTGKISD- 275
Query: 213 DHIGEGIGKGYNFNIPLNKTHMKDADYMAVFHQVLLP 249
IG+G G+G N+PL D VF ++++P
Sbjct: 276 --IGKGKGEGTTLNLPL-PGGSGDIAMRTVFEEIIVP 309
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 57/97 (58%), Gaps = 4/97 (4%)
Query: 359 GMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKA 418
G D F+++I+P A +F P+++LVSAGYDA V DPL + + Y +K
Sbjct: 293 GSGDIAMRTVFEEIIVPCAQRFKPDIILVSAGYDAHVLDPLANLQFTTATYYSLAKDIKR 352
Query: 419 LAQ----GRIILALEGGYNISSISYAMTLCTKALLGD 451
LA+ GR + LEGGYN+ S+S ++ +ALLG+
Sbjct: 353 LAKEVCGGRCVFFLEGGYNLESLSSSVADSFRALLGE 389
>sp|Q5HF39|ACUC_STAAC Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
COL) GN=acuC PE=3 SV=1
Length = 389
Score = 92.8 bits (229), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 107/232 (46%), Gaps = 34/232 (14%)
Query: 21 KFIQPREATQEEILKKHTIEQIELLATTEGSTDVDALEQLSSHYDAIYIHPSSYKLSLLS 80
+ +QPR AT +E++ H + +E + + +SH ++S
Sbjct: 49 QIVQPRIATDDELMLIHKYDYVEAI-------------KHASH-------------GIIS 82
Query: 81 AGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNGMAVIRPPGHHAMKS 140
+ N + NG ++ S G + L D I G++ NG + HHA
Sbjct: 83 EDEAKKYGLNDEENGQFKHMHRHSATIVGGALTLADLIMSGKVLNGCH-LGGGLHHAQPG 141
Query: 141 EYCGYCFFNNVALAAQHALDNTSVSRVLIVDWDVHHGQATQQMFYNDNRVVYFSIHRYEH 200
G+C +N++A+ AQ+ L RVLI+D D HHG TQ FY DN V +SIH E
Sbjct: 142 RASGFCIYNDIAITAQY-LAKEYNQRVLIIDTDAHHGDGTQWSFYADNHVTTYSIH--ET 198
Query: 201 GTF-WPNLRESEYDHIGEGIGKGYNFNIPLNKTHMKDADYMAVFHQVLLPMV 251
G F +P Y GE IG G+ N+PL + + +DA ++ F + P+V
Sbjct: 199 GKFLFPG--SGHYTERGEDIGYGHTVNVPL-EPYTEDASFLECFKLTVEPVV 247
Score = 39.7 bits (91), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 362 DPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALA- 420
D ++ F+ + P+ F P+++L G D DPL + + +++K LA
Sbjct: 232 DASFLECFKLTVEPVVKSFKPDIILSVNGVDIHYRDPLTHLNCTLHSLYEIPYFVKYLAD 291
Query: 421 ---QGRIILALEGGYNISSI 437
G++I+ GGYNI +
Sbjct: 292 SYTNGKVIMFGGGGYNIWRV 311
>sp|P72702|Y245_SYNY3 Uncharacterized protein slr0245 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr0245 PE=3 SV=1
Length = 304
Score = 92.8 bits (229), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 103/215 (47%), Gaps = 43/215 (20%)
Query: 100 SYKLSLLSAGSTIELVDNICRGEIKNGMAVIRPPGHHAMKSEYCGYCFFNNVALAAQHAL 159
SY ++ L+ + ++ VD++ + + + RPPGHHA+++ G+C NNVA+AA +AL
Sbjct: 91 SYDVARLAVRAWLDGVDHVLN-QREAVFVLARPPGHHAIRNTGMGFCLLNNVAIAAHYAL 149
Query: 160 DNTSVSRVLIVDWDVHHGQATQQMFYNDNRVVYFSIHR---------------------- 197
V RV I+DWDVHHG T+ + ++ R+ Y S+H+
Sbjct: 150 TRPGVERVAILDWDVHHGNGTEALVDHNPRIFYCSLHQFPCYPGTGAAGDRGQHDNVLNI 209
Query: 198 --------------YEHGTFWPNLRESEYDHIGEGIGKGYNFNIPLNKTHMKDADYMAVF 243
+EH P LR+ + D + G N + PL ++ DY +
Sbjct: 210 PLKPGGDGKVYREAFEHKVL-PFLRQVKPDLLLVSAGYDANHSDPLAYMNLIPEDYGMMT 268
Query: 244 HQVL----LPMVA-EGGYCLKSLAEGAALTLRALL 273
H ++ P++ EGGY L SLA+ TL+ LL
Sbjct: 269 HYLMEISPYPVLGLEGGYHLPSLAKSVVETLKPLL 303
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 365 YIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALAQGRI 424
Y AF+ +LP Q P+L+LVSAGYDA +DPL + PE Y TH+L ++
Sbjct: 220 YREAFEHKVLPFLRQVKPDLLLVSAGYDANHSDPLAYMNLIPEDYGMMTHYLMEISP-YP 278
Query: 425 ILALEGGYNISSISYAMTLCTKALL 449
+L LEGGY++ S++ ++ K LL
Sbjct: 279 VLGLEGGYHLPSLAKSVVETLKPLL 303
>sp|P64376|ACUC_STAAN Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
N315) GN=acuC PE=1 SV=1
Length = 389
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 107/232 (46%), Gaps = 34/232 (14%)
Query: 21 KFIQPREATQEEILKKHTIEQIELLATTEGSTDVDALEQLSSHYDAIYIHPSSYKLSLLS 80
+ +QPR AT +E++ H + +E + + +SH ++S
Sbjct: 49 QIVQPRIATGDELMLIHKYDYVEAI-------------KHASH-------------GIIS 82
Query: 81 AGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNGMAVIRPPGHHAMKS 140
+ N + NG ++ S G + L D I G++ NG + HHA
Sbjct: 83 EDEAKKYGLNDEENGQFKHMHRHSATIVGGALTLADLIMSGKVLNGCH-LGGGLHHAQPG 141
Query: 141 EYCGYCFFNNVALAAQHALDNTSVSRVLIVDWDVHHGQATQQMFYNDNRVVYFSIHRYEH 200
G+C +N++A+ AQ+ + RVLI+D D HHG TQ FY DN V +SIH E
Sbjct: 142 RASGFCIYNDIAITAQYIAKEYN-QRVLIIDTDAHHGDGTQWSFYADNHVTTYSIH--ET 198
Query: 201 GTF-WPNLRESEYDHIGEGIGKGYNFNIPLNKTHMKDADYMAVFHQVLLPMV 251
G F +P Y GE IG G+ N+PL + + +DA ++ F + P+V
Sbjct: 199 GKFLFPG--SGHYTERGEDIGYGHTVNVPL-EPYTEDASFLECFKLTVEPVV 247
Score = 39.7 bits (91), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 362 DPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALA- 420
D ++ F+ + P+ F P+++L G D DPL + + +++K LA
Sbjct: 232 DASFLECFKLTVEPVVKSFKPDIILSVNGVDIHYRDPLTHLNCTLHSLYEIPYFVKYLAD 291
Query: 421 ---QGRIILALEGGYNISSI 437
G++I+ GGYNI +
Sbjct: 292 SYTNGKVIMFGGGGYNIWRV 311
>sp|P64375|ACUC_STAAM Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
Mu50 / ATCC 700699) GN=acuC PE=3 SV=1
Length = 389
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 107/232 (46%), Gaps = 34/232 (14%)
Query: 21 KFIQPREATQEEILKKHTIEQIELLATTEGSTDVDALEQLSSHYDAIYIHPSSYKLSLLS 80
+ +QPR AT +E++ H + +E + + +SH ++S
Sbjct: 49 QIVQPRIATGDELMLIHKYDYVEAI-------------KHASH-------------GIIS 82
Query: 81 AGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNGMAVIRPPGHHAMKS 140
+ N + NG ++ S G + L D I G++ NG + HHA
Sbjct: 83 EDEAKKYGLNDEENGQFKHMHRHSATIVGGALTLADLIMSGKVLNGCH-LGGGLHHAQPG 141
Query: 141 EYCGYCFFNNVALAAQHALDNTSVSRVLIVDWDVHHGQATQQMFYNDNRVVYFSIHRYEH 200
G+C +N++A+ AQ+ + RVLI+D D HHG TQ FY DN V +SIH E
Sbjct: 142 RASGFCIYNDIAITAQYIAKEYN-QRVLIIDTDAHHGDGTQWSFYADNHVTTYSIH--ET 198
Query: 201 GTF-WPNLRESEYDHIGEGIGKGYNFNIPLNKTHMKDADYMAVFHQVLLPMV 251
G F +P Y GE IG G+ N+PL + + +DA ++ F + P+V
Sbjct: 199 GKFLFPG--SGHYTERGEDIGYGHTVNVPL-EPYTEDASFLECFKLTVEPVV 247
Score = 39.7 bits (91), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 362 DPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALA- 420
D ++ F+ + P+ F P+++L G D DPL + + +++K LA
Sbjct: 232 DASFLECFKLTVEPVVKSFKPDIILSVNGVDIHYRDPLTHLNCTLHSLYEIPYFVKYLAD 291
Query: 421 ---QGRIILALEGGYNISSI 437
G++I+ GGYNI +
Sbjct: 292 SYTNGKVIMFGGGGYNIWRV 311
>sp|Q6GFX3|ACUC_STAAR Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
MRSA252) GN=acuC PE=3 SV=1
Length = 389
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 107/232 (46%), Gaps = 34/232 (14%)
Query: 21 KFIQPREATQEEILKKHTIEQIELLATTEGSTDVDALEQLSSHYDAIYIHPSSYKLSLLS 80
+ +QPR AT +E++ H + +E + + +SH ++S
Sbjct: 49 QIVQPRIATDDELMLIHKYDYVEAI-------------KHASH-------------GIIS 82
Query: 81 AGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNGMAVIRPPGHHAMKS 140
++ N + NG ++ S G + L D I G+ NG + HHA
Sbjct: 83 EDEAMKYGLNDEENGQFKHMHRHSATIVGGALTLADLIMSGKALNGCH-LGGGLHHAQPG 141
Query: 141 EYCGYCFFNNVALAAQHALDNTSVSRVLIVDWDVHHGQATQQMFYNDNRVVYFSIHRYEH 200
G+C +N++A+ AQ+ L RVLI+D D HHG TQ FY DN V +SIH E
Sbjct: 142 RASGFCIYNDIAITAQY-LAKEYNQRVLIIDTDAHHGDGTQWSFYADNHVTTYSIH--ET 198
Query: 201 GTF-WPNLRESEYDHIGEGIGKGYNFNIPLNKTHMKDADYMAVFHQVLLPMV 251
G F +P Y GE IG G+ N+PL + + +D+ ++ F + P+V
Sbjct: 199 GKFLFPG--SGHYTERGEDIGYGHTVNVPL-EPYTEDSSFLECFKLTVEPVV 247
Score = 40.4 bits (93), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 362 DPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALA- 420
D ++ F+ + P+ F P+++L G D DPL + + +++K LA
Sbjct: 232 DSSFLECFKLTVEPVVKSFKPDIILSVNGVDIHYRDPLTHLNCTLHSLYEIPYFVKYLAD 291
Query: 421 ---QGRIILALEGGYNISSI 437
G+II+ GGYNI +
Sbjct: 292 TYTNGKIIMFGGGGYNIWRV 311
>sp|Q8NW34|ACUC_STAAW Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
MW2) GN=acuC PE=3 SV=1
Length = 389
Score = 90.1 bits (222), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 106/232 (45%), Gaps = 34/232 (14%)
Query: 21 KFIQPREATQEEILKKHTIEQIELLATTEGSTDVDALEQLSSHYDAIYIHPSSYKLSLLS 80
+ +QPR AT +E++ H + +E + + +SH ++S
Sbjct: 49 QIVQPRIATDDELMLIHKYDYVEAI-------------KHASH-------------GIIS 82
Query: 81 AGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNGMAVIRPPGHHAMKS 140
+ N + N ++ S G + L D I G++ NG + HHA
Sbjct: 83 EDEAKKYGLNDEENSQFKHMHRHSATIVGGALTLADLIMSGKVLNGCH-LGGGLHHAQPG 141
Query: 141 EYCGYCFFNNVALAAQHALDNTSVSRVLIVDWDVHHGQATQQMFYNDNRVVYFSIHRYEH 200
G+C +N++A+ AQ+ L RVLI+D D HHG TQ FY DN V +SIH E
Sbjct: 142 RASGFCIYNDIAITAQY-LAKEYNQRVLIIDTDAHHGDGTQWSFYADNHVTTYSIH--ET 198
Query: 201 GTF-WPNLRESEYDHIGEGIGKGYNFNIPLNKTHMKDADYMAVFHQVLLPMV 251
G F +P Y GE IG G+ N+PL + + +DA ++ F + P+V
Sbjct: 199 GKFLFPG--SGHYTERGEDIGYGHTVNVPL-EPYTEDASFLECFKLTVEPVV 247
Score = 40.0 bits (92), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 362 DPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALA- 420
D ++ F+ + P+ F P+++L G D DPL + + +++K LA
Sbjct: 232 DASFLECFKLTVEPVVKSFKPDIILSVNGVDIHYRDPLTHLNCTLHSLYEIPYFVKYLAD 291
Query: 421 ---QGRIILALEGGYNISSI 437
G++I+ GGYNI +
Sbjct: 292 SYTNGKVIMFGGGGYNIWRV 311
>sp|Q6G8J2|ACUC_STAAS Acetoin utilization protein AcuC OS=Staphylococcus aureus (strain
MSSA476) GN=acuC PE=3 SV=1
Length = 389
Score = 90.1 bits (222), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 106/232 (45%), Gaps = 34/232 (14%)
Query: 21 KFIQPREATQEEILKKHTIEQIELLATTEGSTDVDALEQLSSHYDAIYIHPSSYKLSLLS 80
+ +QPR AT +E++ H + +E + + +SH ++S
Sbjct: 49 QIVQPRIATDDELMLIHKYDYVEAI-------------KHASH-------------GIIS 82
Query: 81 AGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNGMAVIRPPGHHAMKS 140
+ N + N ++ S G + L D I G++ NG + HHA
Sbjct: 83 EDEAKKYGLNDEENSQFKHMHRHSATIVGGALTLADLIMSGKVLNGCH-LGGGLHHAQPG 141
Query: 141 EYCGYCFFNNVALAAQHALDNTSVSRVLIVDWDVHHGQATQQMFYNDNRVVYFSIHRYEH 200
G+C +N++A+ AQ+ L RVLI+D D HHG TQ FY DN V +SIH E
Sbjct: 142 RASGFCIYNDIAITAQY-LAKEYNQRVLIIDTDAHHGDGTQWSFYADNHVTTYSIH--ET 198
Query: 201 GTF-WPNLRESEYDHIGEGIGKGYNFNIPLNKTHMKDADYMAVFHQVLLPMV 251
G F +P Y GE IG G+ N+PL + + +DA ++ F + P+V
Sbjct: 199 GKFLFPG--SGHYTERGEDIGYGHTVNVPL-EPYTEDASFLECFKLTVEPVV 247
Score = 40.0 bits (92), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 362 DPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALA- 420
D ++ F+ + P+ F P+++L G D DPL + + +++K LA
Sbjct: 232 DASFLECFKLTVEPVVKSFKPDIILSVNGVDIHYRDPLTHLNCTLHSLYEIPYFVKYLAD 291
Query: 421 ---QGRIILALEGGYNISSI 437
G++I+ GGYNI +
Sbjct: 292 SYTNGKVIMFGGGGYNIWRV 311
>sp|Q54X15|HDA21_DICDI Type-2 histone deacetylase 1 OS=Dictyostelium discoideum GN=hdaD PE=2
SV=1
Length = 1489
Score = 89.4 bits (220), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 94/200 (47%), Gaps = 20/200 (10%)
Query: 25 PREATQEEILKKHTIEQIELLATTEGSTDVDALEQLSSHYDAIYIHPSSYKLSLLSA--- 81
P E + IL H+ E + LL D + + L+ + D + + S
Sbjct: 1108 PEEINDKWILTVHSPEYLRLLEDLTEKLDANEIRPLNVNNDGASTGINQFSTSTPITTTG 1167
Query: 82 ------GSTIELRRNQKRNGSHSSSYKLSL----LSAGSTIELVDNICRGEIKNGMAVIR 131
GST ++ + KLSL SAG+T + +DN+ +G + + R
Sbjct: 1168 TATVTPGSTTSSTNGEQCEDGDTFVSKLSLHAAKRSAGATCQAIDNVMKGNVTSAFVAAR 1227
Query: 132 PPGHHAMK------SEYCGYCFFNNVALAAQHALDNTSVSRVLIVDWDVHHGQATQQMFY 185
PPGHHA + + G+C N+V + A++A ++ ++ I+D+DVHHG T+++
Sbjct: 1228 PPGHHAGRDGLTSGTSSQGFCLLNHVCIGAKYAQLKYNLDKIAIIDFDVHHGNGTEEILS 1287
Query: 186 NDNRVVYFSIHRYEHGTFWP 205
ND + SIH +E G F+P
Sbjct: 1288 NDQGFYFLSIHMFEEG-FYP 1306
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 9/90 (10%)
Query: 365 YIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALA---- 420
++ AF +I+ + PEL+L+S G+DA + D L + E Y T L+ +A
Sbjct: 1399 FLKAFS-IIIDKLNDYQPELILISCGFDAHMEDHLASLCLLEENYVEITRSLRRVADRWC 1457
Query: 421 QGRIILALEGGYNISSISYAMTLCTKALLG 450
+GR++ LEGGYNI+ A+ CT A L
Sbjct: 1458 KGRLVSILEGGYNIN----ALRQCTIAHLS 1483
>sp|Q57955|Y535_METJA Uncharacterized protein MJ0535 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0535 PE=3 SV=1
Length = 343
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 119/248 (47%), Gaps = 33/248 (13%)
Query: 23 IQPREATQEEIL----KKHTIEQIELLAT------TEGSTDVDALEQLSSHYDAIYIHPS 72
I P+ E+L K + +E E + T + G D+ +E S+ + + IH
Sbjct: 4 IMPKILYNPEVLGHKPKSYHVENPERVLTILNSLKSNGFDDIVLIEGKSTINEILEIHSR 63
Query: 73 SYKLSLLSAGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNG---MAV 129
Y S+ I L ++ + +L +A + +L + +K+ A+
Sbjct: 64 DYVYSI------INLSKSFNYYDGDTYLCDRTLDAALTAFKLAKEAVKLALKDRDLYFAL 117
Query: 130 IRPPGHHA------MKSEYCGYCFFNNVALAAQHALDNTSVSRVLIVDWDVHHGQATQQM 183
RPPGHHA + + G+C FNN+A AA+ L + +V+I+D+DVHHG TQ++
Sbjct: 118 TRPPGHHAGISGRALGAMSNGFCIFNNIAGAAR--LAKNYMKKVIIIDFDVHHGNGTQEI 175
Query: 184 FYNDNRVVYFSIHRYEHGTFWPNLRESEYDHIGEGIGKGYNFNIPLNKTHMKDADYMAVF 243
F+NDNRV++ H+ +P + IG KG N+P H DADY+ +
Sbjct: 176 FWNDNRVIHIDFHQR---GIYPG--TGDILDIGGEEAKGTKINLPF-PAHSTDADYIFAW 229
Query: 244 HQVLLPMV 251
++++ P++
Sbjct: 230 NEIVEPIL 237
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 60/113 (53%), Gaps = 8/113 (7%)
Query: 361 SDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALA 420
+D +YI A+ +++ PI F+P+ VLVSAG+DA +ND L ++ F ++ A
Sbjct: 221 TDADYIFAWNEIVEPILNYFSPDTVLVSAGFDAFINDGLASMDLTET----FYRFVGAKL 276
Query: 421 QGRIILA-LEGGYNISSISYAMTLCTKALLG--DPLPLLESDLDINSSAVTSI 470
G + A LEGGY+I + YA + D L LE INS+ V S+
Sbjct: 277 SGYSVTAVLEGGYSI-GLKYAPPAFLDGYVDAKDVLDNLEDYTVINSNEVKSM 328
>sp|P32561|RPD3_YEAST Histone deacetylase RPD3 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPD3 PE=1 SV=1
Length = 433
Score = 87.4 bits (215), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 107/234 (45%), Gaps = 35/234 (14%)
Query: 15 GLVQRCKFIQPREATQEEILKKHTIEQIELLATTEGSTDVDALEQLSSHYDAIYIHPSSY 74
GL ++ + + + AT++E+ + HT E I+ L+ D LE S
Sbjct: 56 GLYKKMEIYRAKPATKQEMCQFHTDEYIDFLSRVT----PDNLEMFKR---------ESV 102
Query: 75 KLSLLSAGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNGMAVIRPPG 134
K ++ + Y+ +S G ++E + RG K +AV G
Sbjct: 103 KFNVGDDCPVFD------------GLYEYCSISGGGSMEGAARLNRG--KCDVAVNYAGG 148
Query: 135 -HHAMKSEYCGYCFFNNVALAAQHALDNTSVSRVLIVDWDVHHGQATQQMFYNDNRVVYF 193
HHA KSE G+C+ N++ L L RVL +D DVHHG ++ FY +RV+
Sbjct: 149 LHHAKKSEASGFCYLNDIVLGIIELL--RYHPRVLYIDIDVHHGDGVEEAFYTTDRVMTC 206
Query: 194 SIHRYEHGTFWPNLRESEYDHIGEGIGKGYNFNIPLNKTHMKDADYMAVFHQVL 247
S H+Y G F+P E IG G GK Y N+PL + + DA Y +VF V+
Sbjct: 207 SFHKY--GEFFPGT--GELRDIGVGAGKNYAVNVPL-RDGIDDATYRSVFEPVI 255
>sp|Q56195|ACUC_STAXY Acetoin utilization protein AcuC OS=Staphylococcus xylosus GN=acuC
PE=3 SV=1
Length = 385
Score = 85.9 bits (211), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 111/252 (44%), Gaps = 22/252 (8%)
Query: 16 LVQRCKFIQPREATQEEILKKHTIEQIELLATTEGSTDVDALEQ-------LSSHYDAIY 68
+ Q ++ E Q KH Q+ L TTE ++ L+Q +++ +
Sbjct: 4 MQQTTGYVYANELLQYRFSNKHPFNQMRLKLTTELLMELGQLKQHHIISPRIATDDELSL 63
Query: 69 IHPSSYKLSLLSAGSTIELRRNQKRNGSHSSS-------YKLSLLSAGSTIELVDNICRG 121
IH Y ++ A I K+ G +K S G + L D I G
Sbjct: 64 IHAYDYIQAIRHASHGILSENEAKKYGLDGEDTLQFRMMHKHSARIVGGALNLADQIMSG 123
Query: 122 EIKNGMAVIRPPGHHAMKSEYCGYCFFNNVALAAQHALDNTSVSRVLIVDWDVHHGQATQ 181
+ NG + HH++ G+C +N+VA+ + + + RVL +D D HHG TQ
Sbjct: 124 TLTNGCH-LGGGLHHSLPGRANGFCIYNDVAITISYLMQKYN-QRVLCIDTDAHHGDGTQ 181
Query: 182 QMFYNDNRVVYFSIHRYEHGTF-WPNLRESEYDHIGEGIGKGYNFNIPLNKTHMKDADYM 240
FY +++ + +SIH E G F +P Y G G GY NIPL + + +D ++
Sbjct: 182 WSFYTNDQALIYSIH--ETGKFLFPG--SGHYTERGAEKGFGYTVNIPL-EPYTEDQSFL 236
Query: 241 AVFHQVLLPMVA 252
VF Q + P+VA
Sbjct: 237 DVFKQTIEPVVA 248
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 54/129 (41%), Gaps = 17/129 (13%)
Query: 343 FLLQIPGCYPHRTKSKGMS------------DPEYIAAFQQVILPIAYQFNPELVLVSAG 390
FL G Y R KG D ++ F+Q I P+ F P++++ G
Sbjct: 201 FLFPGSGHYTERGAEKGFGYTVNIPLEPYTEDQSFLDVFKQTIEPVVASFKPDIIVSVHG 260
Query: 391 YDACVNDPLGGCKVSPEAYAHFTHWLKALA----QGRIILALEGGYNI-SSISYAMTLCT 445
D DPL + + +K+LA QG++I+ GGYNI + A +
Sbjct: 261 VDVHYLDPLTHMSCTLNTLYEIPYIVKSLADTYTQGKVIMFGGGGYNIWKVVPRAWSHVF 320
Query: 446 KALLGDPLP 454
AL+G+ P
Sbjct: 321 LALIGEQPP 329
>sp|Q48935|APHA_MYCRA Acetylpolyamine aminohydrolase OS=Mycoplana ramosa GN=aphA PE=1
SV=1
Length = 341
Score = 85.9 bits (211), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 69/142 (48%), Gaps = 4/142 (2%)
Query: 90 NQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNGMAVIRPPGHHAMKSEYCGYCFFN 149
N +++ +L S S I+ D I G K ++ RPPGHHA + GYCF N
Sbjct: 114 NAAETAISPGTWEAALSSMASAIDGADLIAAGH-KAAFSLCRPPGHHAGIDMFGGYCFIN 172
Query: 150 NVALAAQHALDNTSVSRVLIVDWDVHHGQATQQMFYNDNRVVYFSIHRYEHGTFWPNLRE 209
N A+AAQ LD ++ I+D D HHG TQ +FY V + S+H F L
Sbjct: 173 NAAVAAQRLLDK-GAKKIAILDVDFHHGNGTQDIFYERGDVFFASLHGDPAEAFPHFLGY 231
Query: 210 SEYDHIGEGIGKGYNFNIPLNK 231
+E G+G G G N P+ +
Sbjct: 232 AE--ETGKGAGAGTTANYPMGR 251
>sp|Q54VQ7|HDA22_DICDI Type-2 histone deacetylase 2 OS=Dictyostelium discoideum GN=hdaC PE=2
SV=1
Length = 1704
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 66/127 (51%), Gaps = 13/127 (10%)
Query: 100 SYKLSLLSAGSTIELVDNICRGEIKNGMAVIRPPGHHAMK------SEYCGYCFFNNVAL 153
S K +L ++GS VD++ R IRPPGHHA + + GYC NNVA+
Sbjct: 1177 SIKAALRASGSVCAAVDSVSRSGYTRAFCAIRPPGHHAGRYGRTSDAPSQGYCLINNVAI 1236
Query: 154 AAQHALDNTSVSRVLIVDWDVHHGQATQQMFYNDNRVVYFSIHRYEHGTFWPNLRESEYD 213
A++A SR+ +VD+DVHHG TQ++ D+ ++ SIH + ++ Y
Sbjct: 1237 GAKYASLTAGYSRIAVVDFDVHHGNGTQEILSGDDNFLFISIHVCDEKRYF-------YP 1289
Query: 214 HIGEGIG 220
G+ +G
Sbjct: 1290 GTGQDVG 1296
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 7/94 (7%)
Query: 365 YIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALA---- 420
++ + I+P + P+L+ +SAG+D +DP G K++ E Y T +K +A
Sbjct: 1323 FLQQWMNKIIPRLEAYKPQLIFLSAGFDGHKDDPTNGLKLNEEDYFVITKMIKTVAFKYC 1382
Query: 421 QGRIILALEGGYNI---SSISYAMTLCTKALLGD 451
+GRII LEGGY I +S+ + KAL+ D
Sbjct: 1383 KGRIISVLEGGYGIEKTNSLQRCVNSHLKALIED 1416
>sp|O13298|PHD1_SCHPO Histone deacetylase phd1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=phd1 PE=1 SV=1
Length = 434
Score = 83.6 bits (205), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 83/155 (53%), Gaps = 9/155 (5%)
Query: 98 SSSYKLSLLSAGSTIELVDNICRGEIKNGMAVIRPPG-HHAMKSEYCGYCFFNNVALAAQ 156
+Y+ S SAG++++ + +G+ +A+ G HHA + E G+C+ N++ LA
Sbjct: 121 DGTYEFSQRSAGASLDASRKLVQGQTD--IAINWSGGLHHAKRGEASGFCYVNDIVLAIL 178
Query: 157 HALDNTSVSRVLIVDWDVHHGQATQQMFYNDNRVVYFSIHRYEHGTFWPNLRESEYDHIG 216
+ L RVL +D D+HHG QQ FY +RV+ S H+Y +G F+P +D G
Sbjct: 179 NML--RFFPRVLYIDIDIHHGDGVQQAFYESDRVLTVSFHKY-NGDFFPAT--GNFDENG 233
Query: 217 EGIGKGYNFNIPLNKTHMKDADYMAVFHQVLLPMV 251
GK + N+PL + + D Y ++F ++ P +
Sbjct: 234 VKGGKYFALNVPL-EDGIGDEQYTSLFKSIIEPTI 267
>sp|O59702|CLR6_SCHPO Histone deacetylase clr6 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=clr6 PE=1 SV=1
Length = 405
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 103/234 (44%), Gaps = 37/234 (15%)
Query: 16 LVQRCKFIQPREATQEEILKKHTIEQIELLATTEGSTDVDALEQLSSHYDAIYIHPSSYK 75
L ++ I P AT+ ++ + HT E IE L D +E+ H
Sbjct: 44 LYEKLNVITPVRATRNDMTRCHTDEYIEFLW----RVTPDTMEKFQPH------------ 87
Query: 76 LSLLSAGSTIELRRNQKRNGS-HSSSYKLSLLSAGSTIELVDNICRGEIKNGMAVIRPPG 134
+L+ N + Y+ +SAG +I + G + +A+ G
Sbjct: 88 ----------QLKFNVGDDCPVFDGLYEFCSISAGGSIGAAQELNSGNAE--IAINWAGG 135
Query: 135 -HHAMKSEYCGYCFFNNVALAAQHALDNTSVSRVLIVDWDVHHGQATQQMFYNDNRVVYF 193
HHA K E G+C+ N++ALAA L RVL +D DVHHG ++ FY +RV+
Sbjct: 136 LHHAKKREASGFCYVNDIALAALELL--KYHQRVLYIDIDVHHGDGVEEFFYTTDRVMTC 193
Query: 194 SIHRYEHGTFWPNLRESEYDHIGEGIGKGYNFNIPLNKTHMKDADYMAVFHQVL 247
S H++ G ++P G G GK Y N+PL + + D Y +VF V+
Sbjct: 194 SFHKF--GEYFPGT--GHIKDTGIGTGKNYAVNVPL-RDGIDDESYESVFKPVI 242
>sp|O17695|HDA1_CAEEL Histone deacetylase 1 OS=Caenorhabditis elegans GN=hda-1 PE=1 SV=1
Length = 461
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 83/168 (49%), Gaps = 14/168 (8%)
Query: 101 YKLSLLSAGSTIELVDNICRGEIK---NGMAVIRPPGHHAMKSEYCGYCFFNNVALAAQH 157
Y+ LS+G ++ + + ++ N M + HHA KSE G+C+ N++ L
Sbjct: 111 YEFCQLSSGGSLAAATKLNKQKVDIAINWMGGL----HHAKKSEASGFCYTNDIVLGILE 166
Query: 158 ALDNTSVSRVLIVDWDVHHGQATQQMFYNDNRVVYFSIHRYEHGTFWPNLRESEYDHIGE 217
L RVL VD DVHHG ++ FY +RV+ S H+Y G F+P + IG
Sbjct: 167 LL--KYHKRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKY--GDFFPGT--GDLKDIGA 220
Query: 218 GIGKGYNFNIPLNKTHMKDADYMAVFHQVLLPMVAEGGYCLKSLAEGA 265
G GK Y+ N+PL + + D Y ++F ++ ++ C L GA
Sbjct: 221 GKGKLYSVNVPL-RDGITDVSYQSIFKPIMTKVMERFDPCAVVLQCGA 267
>sp|Q94517|HDAC1_DROME Histone deacetylase Rpd3 OS=Drosophila melanogaster GN=Rpd3 PE=1
SV=2
Length = 521
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 111/234 (47%), Gaps = 43/234 (18%)
Query: 15 GLVQRCKFIQPREATQEEILKKHTIEQIELLATT--EGSTDVDALEQLSSHYDAIYIHPS 72
GL ++ + +P +AT +E+ K H+ E + L + + ++ + Q + + +
Sbjct: 44 GLYRKMEIYRPHKATADEMTKFHSDEYVRFLRSIRPDNMSEYNKQMQRFNVGEDCPVFDG 103
Query: 73 SYKLSLLSAGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNGMAVIRP 132
Y+ LSAG GS +++ KL+ ++ IC I G +
Sbjct: 104 LYEFCQLSAG------------GSVAAAVKLNKQAS--------EIC---INWGGGL--- 137
Query: 133 PGHHAMKSEYCGYCFFNNVALAAQHALDNTSVSRVLIVDWDVHHGQATQQMFYNDNRVVY 192
HHA KSE G+C+ N++ L L RVL +D DVHHG ++ FY +RV+
Sbjct: 138 --HHAKKSEASGFCYVNDIVLGILELL--KYHQRVLYIDIDVHHGDGVEEAFYTTDRVMT 193
Query: 193 FSIHRYEHGTFWP---NLRESEYDHIGEGIGKGYNFNIPLNKTHMKDADYMAVF 243
S H+Y G ++P +LR+ IG G GK Y NIPL + M D Y ++F
Sbjct: 194 VSFHKY--GEYFPGTGDLRD-----IGAGKGKYYAVNIPL-RDGMDDDAYESIF 239
Score = 36.6 bits (83), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 359 GMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKA 418
GM D Y + F +I + F P V++ G D+ D LG ++ + + ++K
Sbjct: 229 GMDDDAYESIFVPIISKVMETFQPAAVVLQCGADSLTGDRLGCFNLTVKGHGKCVEFVKK 288
Query: 419 LAQGRIILALEGGYNISSISYAMTLCTKALL 449
+++ GGY I ++S T T L
Sbjct: 289 YNLPFLMVG-GGGYTIRNVSRCWTYETSVAL 318
>sp|P70288|HDAC2_MOUSE Histone deacetylase 2 OS=Mus musculus GN=Hdac2 PE=1 SV=1
Length = 488
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 107/237 (45%), Gaps = 41/237 (17%)
Query: 15 GLVQRCKFIQPREATQEEILKKHTIEQIELLATTEGSTDVDALEQLSSHYDAIYIHPSSY 74
GL ++ + +P +AT EE+ K H+ E I+ L S D + + S
Sbjct: 47 GLYRKMEIYRPHKATAEEMTKYHSDEYIKFLR----SIRPDNMSEYSK------------ 90
Query: 75 KLSLLSAGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNGMAVIRPPG 134
++ + G + ++ LS G ++ + R + MAV G
Sbjct: 91 QMQRFNVGEDCPV---------FDGLFEFCQLSTGGSVAGAVKLNRQQTD--MAVNWAGG 139
Query: 135 -HHAMKSEYCGYCFFNNVALAAQHALDNTSVSRVLIVDWDVHHGQATQQMFYNDNRVVYF 193
HHA KSE G+C+ N++ LA L RVL +D D+HHG ++ FY +RV+
Sbjct: 140 LHHAKKSEASGFCYVNDIVLAILELL--KYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTV 197
Query: 194 SIHRYEHGTFWP---NLRESEYDHIGEGIGKGYNFNIPLNKTHMKDADYMAVFHQVL 247
S H+Y G ++P +LR+ IG G GK Y N P+ + + D Y +F ++
Sbjct: 198 SFHKY--GEYFPGTGDLRD-----IGAGKGKYYAVNFPM-RDGIDDESYGQIFKPII 246
>sp|Q92769|HDAC2_HUMAN Histone deacetylase 2 OS=Homo sapiens GN=HDAC2 PE=1 SV=2
Length = 488
Score = 80.5 bits (197), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 107/237 (45%), Gaps = 41/237 (17%)
Query: 15 GLVQRCKFIQPREATQEEILKKHTIEQIELLATTEGSTDVDALEQLSSHYDAIYIHPSSY 74
GL ++ + +P +AT EE+ K H+ E I+ L S D + + S
Sbjct: 47 GLYRKMEIYRPHKATAEEMTKYHSDEYIKFLR----SIRPDNMSEYSK------------ 90
Query: 75 KLSLLSAGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNGMAVIRPPG 134
++ + G + ++ LS G ++ + R + MAV G
Sbjct: 91 QMQRFNVGEDCPV---------FDGLFEFCQLSTGGSVAGAVKLNRQQTD--MAVNWAGG 139
Query: 135 -HHAMKSEYCGYCFFNNVALAAQHALDNTSVSRVLIVDWDVHHGQATQQMFYNDNRVVYF 193
HHA KSE G+C+ N++ LA L RVL +D D+HHG ++ FY +RV+
Sbjct: 140 LHHAKKSEASGFCYVNDIVLAILELL--KYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTV 197
Query: 194 SIHRYEHGTFWP---NLRESEYDHIGEGIGKGYNFNIPLNKTHMKDADYMAVFHQVL 247
S H+Y G ++P +LR+ IG G GK Y N P+ + + D Y +F ++
Sbjct: 198 SFHKY--GEYFPGTGDLRD-----IGAGKGKYYAVNFPM-RDGIDDESYGQIFKPII 246
>sp|P56518|HDAC1_STRPU Histone deacetylase 1 OS=Strongylocentrotus purpuratus GN=HDAC1
PE=2 SV=1
Length = 576
Score = 80.5 bits (197), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 111/257 (43%), Gaps = 46/257 (17%)
Query: 15 GLVQRCKFIQPREATQEEILKKHTIEQIELLATTEGSTDVDALEQLSSHY--DAIYIHPS 72
GL ++ + +P +A EE+ K H+ + ++ L T + +Q+ + +
Sbjct: 45 GLYRKMEIYRPHKAVMEEMTKYHSDDYVKFLRTIRPDNMSEYTKQMQRFNVGEDCPVFDG 104
Query: 73 SYKLSLLSAGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNGMAVIRP 132
Y+ LS+G GS + + KL+ I +
Sbjct: 105 LYEFCQLSSG------------GSVAGAVKLNKQQTDIAINWAGGL-------------- 138
Query: 133 PGHHAMKSEYCGYCFFNNVALAAQHALDNTSVSRVLIVDWDVHHGQATQQMFYNDNRVVY 192
HHA KSE G+C+ N++ LA L RVL +D D+HHG ++ FY +RV+
Sbjct: 139 --HHAKKSEASGFCYVNDIVLAILELL--KYHQRVLYIDIDIHHGDGVEEAFYTTDRVMT 194
Query: 193 FSIHRYEHGTFWP---NLRESEYDHIGEGIGKGYNFNIPLNKTHMKDADYMAVFHQVL-- 247
S H+Y G ++P +LR+ IG G GK Y N PL + + D Y +F ++
Sbjct: 195 VSFHKY--GEYFPGTGDLRD-----IGAGKGKYYAVNFPL-RDGIDDESYDKIFKPIMCK 246
Query: 248 -LPMVAEGGYCLKSLAE 263
+ M CL+ A+
Sbjct: 247 VMEMYQPSAICLQCGAD 263
>sp|P56517|HDAC1_CHICK Histone deacetylase 1 OS=Gallus gallus GN=HDAC1 PE=2 SV=1
Length = 480
Score = 79.7 bits (195), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 103/235 (43%), Gaps = 37/235 (15%)
Query: 15 GLVQRCKFIQPREATQEEILKKHTIEQIELLATTEGSTDVDALEQLSSHY--DAIYIHPS 72
GL ++ + +P +A EE+ K H+ + I+ L + + +Q+ + +
Sbjct: 46 GLYRKMEIYRPHKANAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDG 105
Query: 73 SYKLSLLSAGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNGMAVIRP 132
++ LSAG GS +S+ KL+ + +
Sbjct: 106 LFEFCQLSAG------------GSVASAVKLNKQQTDIAVNWAGGL-------------- 139
Query: 133 PGHHAMKSEYCGYCFFNNVALAAQHALDNTSVSRVLIVDWDVHHGQATQQMFYNDNRVVY 192
HHA KSE G+C+ N++ LA L RVL +D D+HHG ++ FY +RV+
Sbjct: 140 --HHAKKSEASGFCYVNDIVLAILELLKYHQ--RVLYIDIDIHHGDGVEEAFYTTDRVMT 195
Query: 193 FSIHRYEHGTFWPNLRESEYDHIGEGIGKGYNFNIPLNKTHMKDADYMAVFHQVL 247
S H+Y G ++P + IG G GK Y N PL + + D Y A+F V+
Sbjct: 196 VSFHKY--GEYFPGT--GDLRDIGAGKGKYYAVNYPL-RDGIDDESYEAIFKPVI 245
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 220,275,167
Number of Sequences: 539616
Number of extensions: 9387996
Number of successful extensions: 20712
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 20337
Number of HSP's gapped (non-prelim): 212
length of query: 586
length of database: 191,569,459
effective HSP length: 123
effective length of query: 463
effective length of database: 125,196,691
effective search space: 57966067933
effective search space used: 57966067933
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)