Query psy14515
Match_columns 586
No_of_seqs 297 out of 1631
Neff 5.3
Searched_HMMs 46136
Date Fri Aug 16 21:52:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14515.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14515hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00850 Hist_deacetyl: Histon 100.0 3.3E-76 7.1E-81 613.4 24.1 286 1-449 16-311 (311)
2 PTZ00346 histone deacetylase; 100.0 2.9E-74 6.3E-79 614.6 30.1 291 2-455 48-341 (429)
3 COG0123 AcuC Deacetylases, inc 100.0 2.2E-74 4.8E-79 605.1 28.2 291 1-457 25-318 (340)
4 PTZ00063 histone deacetylase; 100.0 5.3E-72 1.2E-76 600.1 30.8 289 1-452 27-320 (436)
5 KOG1343|consensus 100.0 7.9E-71 1.7E-75 622.7 25.6 459 2-525 56-796 (797)
6 KOG1342|consensus 100.0 4.9E-58 1.1E-62 474.5 25.8 290 3-455 32-325 (425)
7 KOG1343|consensus 100.0 1.4E-45 3E-50 417.8 14.6 236 14-280 478-763 (797)
8 KOG1344|consensus 100.0 1.2E-33 2.6E-38 277.7 14.8 270 2-443 40-316 (324)
9 PTZ00346 histone deacetylase; 94.5 0.053 1.1E-06 59.9 5.5 29 252-280 314-342 (429)
10 PTZ00063 histone deacetylase; 91.2 0.85 1.8E-05 50.7 8.8 25 252-276 296-320 (436)
11 PF00850 Hist_deacetyl: Histon 89.4 0.24 5.3E-06 52.3 2.6 21 252-272 290-310 (311)
12 COG0123 AcuC Deacetylases, inc 78.5 2.9 6.3E-05 45.2 4.9 27 252-278 289-315 (340)
13 PF09757 Arb2: Arb2 domain; I 77.8 1.6 3.4E-05 42.5 2.4 22 504-525 13-34 (178)
14 KOG0121|consensus 72.5 2.7 5.8E-05 39.7 2.3 48 134-181 69-121 (153)
15 PRK13236 nitrogenase reductase 61.5 9.6 0.00021 39.9 4.1 32 152-185 23-54 (296)
16 cd01835 SGNH_hydrolase_like_3 55.4 44 0.00095 31.8 7.3 62 358-419 46-108 (193)
17 TIGR01969 minD_arch cell divis 52.1 15 0.00034 36.3 3.7 20 159-179 25-44 (251)
18 cd04502 SGNH_hydrolase_like_7 45.0 45 0.00097 31.1 5.4 42 376-420 45-87 (171)
19 TIGR02707 butyr_kinase butyrat 43.9 1E+02 0.0022 33.5 8.6 74 364-454 274-349 (351)
20 TIGR01287 nifH nitrogenase iro 39.9 36 0.00078 34.8 4.2 23 159-183 24-46 (275)
21 cd01836 FeeA_FeeB_like SGNH_hy 39.2 91 0.002 29.5 6.6 30 358-392 49-78 (191)
22 PRK13232 nifH nitrogenase redu 39.0 30 0.00064 35.5 3.4 24 159-184 25-48 (273)
23 PRK10818 cell division inhibit 38.8 33 0.00072 34.8 3.7 19 161-180 29-47 (270)
24 PF13472 Lipase_GDSL_2: GDSL-l 37.8 53 0.0012 29.5 4.6 69 358-429 39-109 (179)
25 CHL00175 minD septum-site dete 36.6 38 0.00083 34.7 3.8 22 159-181 40-61 (281)
26 cd01828 sialate_O-acetylestera 35.3 1.4E+02 0.0031 27.6 7.1 15 379-393 46-60 (169)
27 cd00840 MPP_Mre11_N Mre11 nucl 32.9 2.1E+02 0.0045 27.5 8.1 60 362-430 23-84 (223)
28 cd02036 MinD Bacterial cell di 31.9 54 0.0012 30.4 3.7 18 161-179 26-43 (179)
29 KOG4013|consensus 31.7 57 0.0012 33.1 3.9 63 364-442 137-199 (255)
30 PRK13230 nitrogenase reductase 31.2 52 0.0011 33.8 3.7 21 564-584 256-276 (279)
31 PHA02518 ParA-like protein; Pr 29.1 57 0.0012 31.4 3.4 20 159-180 25-44 (211)
32 cd03110 Fer4_NifH_child This p 28.7 40 0.00087 31.9 2.2 15 165-179 25-39 (179)
33 PRK13234 nifH nitrogenase redu 27.0 66 0.0014 33.7 3.7 22 161-184 30-51 (295)
34 cd01825 SGNH_hydrolase_peri1 S 26.6 1.9E+02 0.0042 26.9 6.5 19 375-393 50-68 (189)
35 TIGR01968 minD_bact septum sit 26.5 71 0.0015 31.7 3.7 14 165-178 31-44 (261)
36 cd01841 NnaC_like NnaC (CMP-Ne 26.5 2.6E+02 0.0057 25.8 7.4 56 359-420 33-88 (174)
37 cd02117 NifH_like This family 26.0 78 0.0017 31.1 3.8 19 165-184 29-47 (212)
38 cd02040 NifH NifH gene encodes 25.7 82 0.0018 31.7 4.0 21 161-183 27-47 (270)
39 TIGR02016 BchX chlorophyllide 24.8 75 0.0016 33.4 3.7 14 165-178 29-42 (296)
40 cd01822 Lysophospholipase_L1_l 23.8 2.7E+02 0.0059 25.6 6.9 26 363-392 50-75 (177)
41 PF00582 Usp: Universal stress 22.9 3.5E+02 0.0075 22.9 7.0 49 370-427 91-139 (140)
42 KOG3035|consensus 22.9 1.2E+02 0.0026 31.3 4.4 155 380-575 5-163 (245)
43 TIGR01281 DPOR_bchL light-inde 22.6 90 0.0019 31.7 3.6 17 165-182 29-45 (268)
44 PRK13185 chlL protochlorophyll 22.5 86 0.0019 31.8 3.5 20 161-182 28-47 (270)
45 PF02310 B12-binding: B12 bind 22.5 1.7E+02 0.0037 25.6 5.0 54 372-438 42-95 (121)
46 cd01833 XynB_like SGNH_hydrola 22.0 1.9E+02 0.004 26.4 5.3 31 359-393 22-52 (157)
47 PRK13233 nifH nitrogenase redu 21.4 91 0.002 31.8 3.4 14 165-178 32-45 (275)
48 PF02701 zf-Dof: Dof domain, z 21.4 30 0.00065 28.7 -0.1 9 143-151 16-24 (63)
49 TIGR03371 cellulose_yhjQ cellu 20.1 1E+02 0.0023 30.4 3.4 14 161-175 28-41 (246)
No 1
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine. Histone deacetylases (HDA) catalyse the removal of the acetyl group. Histone deacetylases, acetoin utilization proteins and acetylpolyamine amidohydrolases are all members of this ancient protein superfamily []. HDAs function in multi-subunit complexes, reversing the acetylation of histones by histone acetyltransferases [, ], and are also believed to deacetylate general transcription factors such as TFIIF and sequence-specific transcription factors such as p53 []. Thus, HDAs contribute to the regulation of transcription, in particular transcriptional repression []. At N-terminal tails of histones, removal of the acetyl group from the epsilon-amino group of a lysine side chain will restore its positivecharge, which may stabilise the histone-DNA interaction and prevent activating transcription factors binding to promoter elements []. HDAs play important roles in the cell cycle and differentiation, and their deregulation can contribute to the development of cancer [, ]. This entry represents the structural domain found in histone deacetylases. It consists of a 3-layer(alpha-beta-alpha) sandwich.; PDB: 4A69_A 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G 3MAX_C 3MEN_D 1T64_B ....
Probab=100.00 E-value=3.3e-76 Score=613.37 Aligned_cols=286 Identities=43% Similarity=0.756 Sum_probs=233.8
Q ss_pred CchHHHHHHHHHHc-CCCCCceEeCCCCCCHHHHHccCChHHHHHHhhhcCCCchHH-Hh--hhh--cCCCccccCCChh
Q psy14515 1 MLKHVNIKDPCKEL-GLVQRCKFIQPREATQEEILKKHTIEQIELLATTEGSTDVDA-LE--QLS--SHYDAIYIHPSSY 74 (586)
Q Consensus 1 m~K~~~I~~~L~~~-GL~~~~~~i~pr~At~eeLl~vHs~eYV~~L~~~~~~~~~~~-~~--~l~--~~~d~~~~~~~t~ 74 (586)
.+|+++|++.|++. +++++ ++|+.++|++|||++||+.|++.+....... .. ... ...+++++++.++
T Consensus 16 p~R~~~i~~~L~~~~~l~~~------~~a~~~~L~~vH~~~Yv~~l~~~~~~~~~~~~~~~~~~~~~~~~~dt~~~~~~~ 89 (311)
T PF00850_consen 16 PERLESIVEALKESYGLLPR------RPATDEELLRVHDPEYVDFLESASKEAKEEEEAGSPEFPNILDDGDTPISPGSW 89 (311)
T ss_dssp THHHHHHHHHHHHTTTGGGG----------HHHHTTTS-HHHHHHHHHHHHHTSGCTHHHHHHHCCBTSSSSSEBCTTHH
T ss_pred HHHHHHHHHHHHHhcCCCCC------CCCCHHHHHHcCCHHHHHHHHHhcccccccccccccccccccCCCCcceehHHH
Confidence 36999999999997 88765 9999999999999999999998764332211 11 111 1134578888888
Q ss_pred hhhhhhcCchhHHhhhcccCCCCCchhhhHHHhhccHHHHHHHHhccCcccceEeecCCCCCCCccccCCccccchHHHH
Q psy14515 75 KLSLLSAGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNGMAVIRPPGHHAMKSEYCGYCFFNNVALA 154 (586)
Q Consensus 75 ~~a~l~~g~~~~~~~~~~~~~~~~~~~~aa~~AaG~ti~aa~~V~~g~~~ngfAivRPPGHHA~~~~a~GFC~fNNvAIA 154 (586)
+++++ ++|++++|+++|++|+.+++||++|||||||.+++++|||+|||||||
T Consensus 90 ~~a~~---------------------------a~g~~l~a~~~v~~g~~~~~~a~~rppgHHA~~~~a~GFC~~Nnvaia 142 (311)
T PF00850_consen 90 EAARL---------------------------AAGGTLEAADAVLSGEIKNAFALVRPPGHHAERDRAMGFCYFNNVAIA 142 (311)
T ss_dssp HHHHH---------------------------HHHHHHHHHHHHHTTSSSEEEEEESS--TT-BTTBBBTTBSS-HHHHH
T ss_pred HHHHH---------------------------HHHHHHHHHHhhhcccccceeeecCccccccCcCcCcceeeeccHHHH
Confidence 88777 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCeEEEEecccccCccceeccccCCceEEEeeccccCCCCCC-CCCCCCCccccccCCccceeeecCCCCC
Q psy14515 155 AQHALDNTSVSRVLIVDWDVHHGQATQQMFYNDNRVVYFSIHRYEHGTFWP-NLRESEYDHIGEGIGKGYNFNIPLNKTH 233 (586)
Q Consensus 155 Ak~al~~~g~~RVlIVD~DVHHGNGTQ~iFy~dp~VlyiSiHry~~g~fyP-~~~~~~~~~~G~g~G~G~nvNVPl~~~g 233 (586)
|++|+++++++||+|||||||||||||++||+||+|+|+|||+|+ +.||| +++ ..+++|.|.|+|||+||||+
T Consensus 143 a~~l~~~~~~~rV~iiD~DvHhGnGtq~if~~d~~V~~~SiH~~~-~~~yP~~tG--~~~e~G~~~g~g~~~NipL~--- 216 (311)
T PF00850_consen 143 AKYLRKKYGLKRVAIIDFDVHHGNGTQEIFYDDPRVLYISIHQYP-GNFYPFGTG--FPDEIGEGKGKGYNLNIPLP--- 216 (311)
T ss_dssp HHHHHHTTTTSSEEEEE-SSS--HHHHHHTTT-SSEEEEEEEE-C-TTSTTTSS----TT--ESGGGTTSEEEEEE----
T ss_pred HHHHhhccccceEEEEEeCCCCcccchhheeCCCCEEecCccccc-cccCCCcCC--CccccCCCcccceeEecccc---
Confidence 999999889999999999999999999999999999999999985 56999 654 67899999999999999996
Q ss_pred CCchHHHHHHHHhhhhhhhcCCccccchhhhHHHHHHhhhCCCCCCCCCCCCCCCCCccccccchhHhHhhhccCccchh
Q psy14515 234 MKDADYMAVFHQVLLPMVAEGGYCLKSLAEGAALTLRALLDDPCPNFETLGTPSERPKIWKEGKQCLVLALKHIVPQNSI 313 (586)
Q Consensus 234 ~~D~DYlaif~~vl~p~aleggy~~~sl~~~~~~t~~~llGdp~p~~~~~~~p~~~p~~w~~~r~~~~~~~~h~~~~~~i 313 (586)
T Consensus 217 -------------------------------------------------------------------------------- 216 (311)
T PF00850_consen 217 -------------------------------------------------------------------------------- 216 (311)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhhhhhhhhhhccCCCCCCCCccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEEcCCcC
Q psy14515 314 LSNLDRASRRFKLLTFVHLPAENTDVPLLFLLQIPGCYPHRTKSKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDA 393 (586)
Q Consensus 314 ~~~~~~~~~r~a~~~~~hs~~~~~d~~~~f~~~i~~~~p~~~~~~g~gd~~yl~a~~~ivlPi~~~f~PdlVlvsaGfDa 393 (586)
.|++|.+|+.+|+++|+|++.+|+||+||||||||+
T Consensus 217 --------------------------------------------~g~~d~~y~~~~~~~l~~~~~~f~P~~ivvsaG~D~ 252 (311)
T PF00850_consen 217 --------------------------------------------PGTGDDEYLEAFEEILLPALEEFRPDLIVVSAGFDA 252 (311)
T ss_dssp --------------------------------------------TTEBHHHHHHHHHHHHHHHHHHHT-SEEEEEE-STT
T ss_pred --------------------------------------------cccchHHHHHHHhhccccchhcccCcEEEEccCccc
Confidence 278899999999999999999999999999999999
Q ss_pred CCCCcCcccccCHHHHHHHHHHHHHhcC---CcEEEEcCCCCCcchHHHHHHHHHHHHc
Q psy14515 394 CVNDPLGGCKVSPEAYAHFTHWLKALAQ---GRIILALEGGYNISSISYAMTLCTKALL 449 (586)
Q Consensus 394 ~~~DplG~~~vt~~~y~~~t~~L~~la~---grvv~vLEGGYn~~~ia~~~~~~~~~Ll 449 (586)
+.+||+|+++||+++|.+++++|+++|. +|+|++|||||+++++++++..++++|.
T Consensus 253 ~~~Dplg~~~lt~~~~~~~~~~~~~~a~~~~~~~v~vleGGY~~~~~~~~~~~~~~~L~ 311 (311)
T PF00850_consen 253 HAGDPLGGLNLTPEGYRELTRRLKSLAKRHCIPVVSVLEGGYNPESLARSWAAVIAALA 311 (311)
T ss_dssp BTTSTT-SEBB-HHHHHHHHHHHHTTHSHHSGCEEEEE-S-SSHHHHHHHHHHHHHHH-
T ss_pred chhccccCcCCCHHHHHHHHHHHHHHHHhcCCcEEEEECCCCChhHHHHHHHHHHHHhC
Confidence 9999999999999999999999999985 4999999999999999999999999983
No 2
>PTZ00346 histone deacetylase; Provisional
Probab=100.00 E-value=2.9e-74 Score=614.58 Aligned_cols=291 Identities=23% Similarity=0.395 Sum_probs=260.3
Q ss_pred chHHHHHHHHHHcCCCCCceEeCCCCCCHHHHHccCChHHHHHHhhhcCCC--chHHHhhhhcCCCccccCCChhhhhhh
Q psy14515 2 LKHVNIKDPCKELGLVQRCKFIQPREATQEEILKKHTIEQIELLATTEGST--DVDALEQLSSHYDAIYIHPSSYKLSLL 79 (586)
Q Consensus 2 ~K~~~I~~~L~~~GL~~~~~~i~pr~At~eeLl~vHs~eYV~~L~~~~~~~--~~~~~~~l~~~~d~~~~~~~t~~~a~l 79 (586)
+|++++++.|+++|+..++.++.|++|+.+||++||+++||++|++..... ........... +++++++++++++++
T Consensus 48 ~Rl~~~~~ll~~~gl~~~~~~~~p~~At~eeL~~vHs~~YI~~l~~~~~~~~~~~~~~~~~~~d-~Dtpv~~~~~~~a~l 126 (429)
T PTZ00346 48 YRVLAAMEIVRSLKIDAHCRTVVPPLVKVEELMAYHTDTYLANLGLHSCRSWLWNAETSKVFFS-GDCPPVEGLMEHSIA 126 (429)
T ss_pred HHHHHHHHHHHhcCCcccCeeecCCCCCHHHHHHhCCHHHHHHHHHhccccccccccccccccc-CCCCCChHHHHHHHH
Confidence 589999999999999999999999999999999999999999998742211 00001111111 236788888888887
Q ss_pred hcCchhHHhhhcccCCCCCchhhhHHHhhccHHHHHHHHhccCcccceEeecCCC-CCCCccccCCccccchHHHHHHHH
Q psy14515 80 SAGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNGMAVIRPPG-HHAMKSEYCGYCFFNNVALAAQHA 158 (586)
Q Consensus 80 ~~g~~~~~~~~~~~~~~~~~~~~aa~~AaG~ti~aa~~V~~g~~~ngfAivRPPG-HHA~~~~a~GFC~fNNvAIAAk~a 158 (586)
+||+++.||++|++|+.+ +|++|||| |||++++++|||||||+||||++|
T Consensus 127 ---------------------------aaGgsl~Aa~~v~~g~~~--~Ai~~pGG~HHA~~~~a~GFC~fNdvAIAa~~l 177 (429)
T PTZ00346 127 ---------------------------TASGTLMGAVLLNSGQVD--VAVHWGGGMHHSKCGECSGFCYVNDIVLGILEL 177 (429)
T ss_pred ---------------------------HHHHHHHHHHHHHcCCCC--EEEeCCCCcCcCCCCCCCcchHHhHHHHHHHHH
Confidence 999999999999999764 89999999 999999999999999999999999
Q ss_pred HhhCCCCeEEEEecccccCccceeccccCCceEEEeeccccCCCCCCCCCCCCCccccccCCccceeeecCCCCCCCchH
Q psy14515 159 LDNTSVSRVLIVDWDVHHGQATQQMFYNDNRVVYFSIHRYEHGTFWPNLRESEYDHIGEGIGKGYNFNIPLNKTHMKDAD 238 (586)
Q Consensus 159 l~~~g~~RVlIVD~DVHHGNGTQ~iFy~dp~VlyiSiHry~~g~fyP~~~~~~~~~~G~g~G~G~nvNVPl~~~g~~D~D 238 (586)
++++ +||||||||||||||||++||+||+|||+|+|+|.. .|||+++ ..+++|.|.|+||++||||+
T Consensus 178 l~~~--~RVliID~DVHHGnGTqeiF~~dp~Vl~vSiHq~~~-~fyPgtG--~~~e~G~g~G~g~~vNVPL~-------- 244 (429)
T PTZ00346 178 LKCH--DRVLYVDIDMHHGDGVDEAFCTSDRVFTLSLHKFGE-SFFPGTG--HPRDVGYGRGRYYSMNLAVW-------- 244 (429)
T ss_pred HHcC--CeEEEEeCCCCCCchHHHHHcCCCCeEEEEecCCCC-CCCCCCC--CccccCCCCCceeEEeeeCC--------
Confidence 8764 799999999999999999999999999999999864 4999975 57899999999999999996
Q ss_pred HHHHHHHhhhhhhhcCCccccchhhhHHHHHHhhhCCCCCCCCCCCCCCCCCccccccchhHhHhhhccCccchhhhhhh
Q psy14515 239 YMAVFHQVLLPMVAEGGYCLKSLAEGAALTLRALLDDPCPNFETLGTPSERPKIWKEGKQCLVLALKHIVPQNSILSNLD 318 (586)
Q Consensus 239 Ylaif~~vl~p~aleggy~~~sl~~~~~~t~~~llGdp~p~~~~~~~p~~~p~~w~~~r~~~~~~~~h~~~~~~i~~~~~ 318 (586)
T Consensus 245 -------------------------------------------------------------------------------- 244 (429)
T PTZ00346 245 -------------------------------------------------------------------------------- 244 (429)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhhhhhccCCCCCCCCccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEEcCCcCCCCCc
Q psy14515 319 RASRRFKLLTFVHLPAENTDVPLLFLLQIPGCYPHRTKSKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDP 398 (586)
Q Consensus 319 ~~~~r~a~~~~~hs~~~~~d~~~~f~~~i~~~~p~~~~~~g~gd~~yl~a~~~ivlPi~~~f~PdlVlvsaGfDa~~~Dp 398 (586)
.|++|.+|+.+|+.+|.|++++|+||+||||||||++.+||
T Consensus 245 ---------------------------------------~G~~D~~Yl~~f~~ii~p~l~~F~PdlIvvsaG~Da~~~Dp 285 (429)
T PTZ00346 245 ---------------------------------------DGITDFYYLGLFEHALHSIVRRYSPDAIVLQCGADSLAGDR 285 (429)
T ss_pred ---------------------------------------CCcCHHHHHHHHHHHHHHHHHhcCCCEEEEECCccCCCCCC
Confidence 37899999999999999999999999999999999999999
Q ss_pred CcccccCHHHHHHHHHHHHHhcCCcEEEEcCCCCCcchHHHHHHHHHHHHcCCCCCC
Q psy14515 399 LGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYAMTLCTKALLGDPLPL 455 (586)
Q Consensus 399 lG~~~vt~~~y~~~t~~L~~la~grvv~vLEGGYn~~~ia~~~~~~~~~Llg~~~p~ 455 (586)
||+++||+++|.+++++++++ ++|++++|||||++.++++||+.+++.|+|.++|+
T Consensus 286 Lg~l~LT~~g~~~~~~~l~~~-~~plv~vleGGY~~~~lar~w~~~t~~l~g~~i~~ 341 (429)
T PTZ00346 286 LGLLNLSSFGHGQCVQAVRDL-GIPMLALGGGGYTIRNVAKLWAYETSILTGHPLPP 341 (429)
T ss_pred CCCceeCHHHHHHHHHHHHhc-CCCEEEEeCCcCCccHHHHHHHHHHHHHcCCCCCC
Confidence 999999999999999999997 58999999999999999999999999999998773
No 3
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.2e-74 Score=605.14 Aligned_cols=291 Identities=37% Similarity=0.660 Sum_probs=268.2
Q ss_pred CchHHHHHHHHHHcCCCCCceEeCCCCCCHHHHHccCChHHHHHHhhhcCCCchHHHhhhhcCCCccccCCChhhhhhhh
Q psy14515 1 MLKHVNIKDPCKELGLVQRCKFIQPREATQEEILKKHTIEQIELLATTEGSTDVDALEQLSSHYDAIYIHPSSYKLSLLS 80 (586)
Q Consensus 1 m~K~~~I~~~L~~~GL~~~~~~i~pr~At~eeLl~vHs~eYV~~L~~~~~~~~~~~~~~l~~~~d~~~~~~~t~~~a~l~ 80 (586)
+.|+..|.++|++.|+...+++++|++++.++|++||+++||++|++.+.... ...-..++++++.++++|++
T Consensus 25 p~R~~~~~~~l~~~~~~~~~~~~~p~~~~~~~l~~vH~~~yv~~l~~~~~~~~------~~~~d~d~~~s~~~~~~a~~- 97 (340)
T COG0123 25 PDRLRLILELLESSGLPDSLELVEPRPATLEELLLVHSPDYVEFLESLSEEEG------YGNLDGDTPVSPGTYEAARL- 97 (340)
T ss_pred hHHHHHHHHHHHhcCccccccccCCCcCCHHHHHhhCCHHHHHHHHHhccccc------cccccCCCccChHHHHHHHH-
Confidence 46999999999999998899999999999999999999999999999875511 11112346799999998888
Q ss_pred cCchhHHhhhcccCCCCCchhhhHHHhhccHHHHHHHHhccCcccceEeecCCCCCCCccccCCccccchHHHHHHHHHh
Q psy14515 81 AGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNGMAVIRPPGHHAMKSEYCGYCFFNNVALAAQHALD 160 (586)
Q Consensus 81 ~g~~~~~~~~~~~~~~~~~~~~aa~~AaG~ti~aa~~V~~g~~~ngfAivRPPGHHA~~~~a~GFC~fNNvAIAAk~al~ 160 (586)
++|++++|+++|++|+ +++|+++|||||||++++++|||+|||+||||++|++
T Consensus 98 --------------------------a~G~al~A~~~v~~g~-~~~~~~~rppgHHA~~~~a~GFC~fNn~Aiaa~~l~~ 150 (340)
T COG0123 98 --------------------------AAGGALTAVDAVLEGE-DNAFALVRPPGHHAGRDRASGFCLFNNVAIAAKYLLK 150 (340)
T ss_pred --------------------------HhhHHHHHHHHHHcCc-cceEEECCCCcccccCCCCceeeeecHHHHHHHHHHH
Confidence 9999999999999998 8999999999999999999999999999999999998
Q ss_pred hCCCCeEEEEecccccCccceeccccCCceEEEeeccccCCCCCCCCCCCCCccccccCCccceeeecCCCCCCCchHHH
Q psy14515 161 NTSVSRVLIVDWDVHHGQATQQMFYNDNRVVYFSIHRYEHGTFWPNLRESEYDHIGEGIGKGYNFNIPLNKTHMKDADYM 240 (586)
Q Consensus 161 ~~g~~RVlIVD~DVHHGNGTQ~iFy~dp~VlyiSiHry~~g~fyP~~~~~~~~~~G~g~G~G~nvNVPl~~~g~~D~DYl 240 (586)
+ +++||+|||||||||||||+|||+|++|+|+|+|+++. .|||+++. .+++|.|. +||++||||+
T Consensus 151 ~-~~~RVaIiD~DvHHGnGTqeify~~~~V~~~S~H~~~~-~~yPgtg~--~~e~g~g~-~g~~vNiPLp---------- 215 (340)
T COG0123 151 K-GVKRVAIIDFDVHHGNGTQEIFYDDDDVLTVSLHQDGR-PFYPGTGG--ADEIGEGK-EGNNVNIPLP---------- 215 (340)
T ss_pred c-CCCcEEEEEecCCCChhhHHHHccCCCeEEEeccCCCC-CCCCcCCC--ccccccCc-ccceEeeecC----------
Confidence 8 89999999999999999999999999999999999865 69999875 78999999 9999999996
Q ss_pred HHHHHhhhhhhhcCCccccchhhhHHHHHHhhhCCCCCCCCCCCCCCCCCccccccchhHhHhhhccCccchhhhhhhhh
Q psy14515 241 AVFHQVLLPMVAEGGYCLKSLAEGAALTLRALLDDPCPNFETLGTPSERPKIWKEGKQCLVLALKHIVPQNSILSNLDRA 320 (586)
Q Consensus 241 aif~~vl~p~aleggy~~~sl~~~~~~t~~~llGdp~p~~~~~~~p~~~p~~w~~~r~~~~~~~~h~~~~~~i~~~~~~~ 320 (586)
T Consensus 216 -------------------------------------------------------------------------------- 215 (340)
T COG0123 216 -------------------------------------------------------------------------------- 215 (340)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhhhccCCCCCCCCccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEEcCCcCCCCCcCc
Q psy14515 321 SRRFKLLTFVHLPAENTDVPLLFLLQIPGCYPHRTKSKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLG 400 (586)
Q Consensus 321 ~~r~a~~~~~hs~~~~~d~~~~f~~~i~~~~p~~~~~~g~gd~~yl~a~~~ivlPi~~~f~PdlVlvsaGfDa~~~DplG 400 (586)
+|++|.+|+.+|+.+|+|++++|+||+||||||||+|.+||||
T Consensus 216 -------------------------------------~g~~d~~y~~a~~~~v~~~~~~f~PdlvivsaG~D~h~~Dpl~ 258 (340)
T COG0123 216 -------------------------------------PGTGDDSYLEALEEIVLPLLEEFKPDLVIVSAGFDAHRGDPLG 258 (340)
T ss_pred -------------------------------------CCCCcHHHHHHHHHHHHHHHHhcCCCEEEEecCcccCCCCccc
Confidence 3789999999999999999999999999999999999999999
Q ss_pred ccccCHHHHHHHHHHHHHhcC---CcEEEEcCCCCCcchHHHHHHHHHHHHcCCCCCCCc
Q psy14515 401 GCKVSPEAYAHFTHWLKALAQ---GRIILALEGGYNISSISYAMTLCTKALLGDPLPLLE 457 (586)
Q Consensus 401 ~~~vt~~~y~~~t~~L~~la~---grvv~vLEGGYn~~~ia~~~~~~~~~Llg~~~p~~~ 457 (586)
.++||.++|.+|+++++++|. ||++++|||||+.+++++++.+.+..|.|...+...
T Consensus 259 ~~~Lt~~~~~~~~~~v~~~a~~~~~~~~~vleGGY~~~~l~~~~~~~~~~l~~~~~~~~~ 318 (340)
T COG0123 259 RLNLTEEGYAKIGRAVRKLAEGYGGPVVAVLEGGYNLDALARSLVAFLAGLAGLVEEELE 318 (340)
T ss_pred eeecCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCChHHHHHHHHHHHHHHcCCCccccc
Confidence 999999999999999999985 599999999999999999999999999997655543
No 4
>PTZ00063 histone deacetylase; Provisional
Probab=100.00 E-value=5.3e-72 Score=600.09 Aligned_cols=289 Identities=23% Similarity=0.436 Sum_probs=259.2
Q ss_pred CchHHHHHHHHHHcCCCCCceEeCCCCCCHHHHHccCChHHHHHHhhhcCCCchH---HHhhhhcCC-CccccCCChhhh
Q psy14515 1 MLKHVNIKDPCKELGLVQRCKFIQPREATQEEILKKHTIEQIELLATTEGSTDVD---ALEQLSSHY-DAIYIHPSSYKL 76 (586)
Q Consensus 1 m~K~~~I~~~L~~~GL~~~~~~i~pr~At~eeLl~vHs~eYV~~L~~~~~~~~~~---~~~~l~~~~-d~~~~~~~t~~~ 76 (586)
..|++.++++|+++||..++++++|++|+.++|++||+++||++|++.+.....+ .+..+.... .+++++++++++
T Consensus 27 P~Rl~~~~~ll~~~gl~~~~~~~~p~~At~eeL~~vHs~~YI~~L~~~~~~~~~~~~~~~~~f~lg~~~D~pv~~gl~~~ 106 (436)
T PTZ00063 27 PQRIRMAHALILSYDLYKHMEIYRPHKSVEPELVLFHDEEYVDFLSSISPENYRDFTYQLKRFNVGEATDCPVFDGLFEF 106 (436)
T ss_pred hHHHHHHHHHHHhCCCcccCeEecCCCCCHHHHHHhCCHHHHHHHHHhChhhcccchhhhhhcccCCCCCCCcccHHHHH
Confidence 3699999999999999999999999999999999999999999999765432110 111111111 246788888888
Q ss_pred hhhhcCchhHHhhhcccCCCCCchhhhHHHhhccHHHHHHHHhccCcccceEeecCCC-CCCCccccCCccccchHHHHH
Q psy14515 77 SLLSAGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNGMAVIRPPG-HHAMKSEYCGYCFFNNVALAA 155 (586)
Q Consensus 77 a~l~~g~~~~~~~~~~~~~~~~~~~~aa~~AaG~ti~aa~~V~~g~~~ngfAivRPPG-HHA~~~~a~GFC~fNNvAIAA 155 (586)
+++ +||++|.||+++++|+. +||++|||| |||.+++|+||||||||||||
T Consensus 107 a~~---------------------------aaGgsl~Aa~~l~~g~~--~iAin~~GG~HHA~~~~A~GFC~~NdiaiAi 157 (436)
T PTZ00063 107 QQS---------------------------CAGASIDGAYKLNNHQA--DICVNWSGGLHHAKRSEASGFCYINDIVLGI 157 (436)
T ss_pred HHH---------------------------HHhHHHHHHHHHHcCCC--CEEeeCCCCCCCCccCCCCceeeecHHHHHH
Confidence 777 99999999999999975 599999999 999999999999999999999
Q ss_pred HHHHhhCCCCeEEEEecccccCccceeccccCCceEEEeeccccCCCCCCCCCCCCCccccccCCccceeeecCCCCCCC
Q psy14515 156 QHALDNTSVSRVLIVDWDVHHGQATQQMFYNDNRVVYFSIHRYEHGTFWPNLRESEYDHIGEGIGKGYNFNIPLNKTHMK 235 (586)
Q Consensus 156 k~al~~~g~~RVlIVD~DVHHGNGTQ~iFy~dp~VlyiSiHry~~g~fyP~~~~~~~~~~G~g~G~G~nvNVPl~~~g~~ 235 (586)
++|++.+ +||||||||||||||||++||+||+|+|+|+|+|. +|||+++ +.+++|.|.|+||++||||+
T Consensus 158 ~~L~~~~--~RVliID~DvHHGdGtqe~F~~~~~VltvS~H~~~--~ffPgtG--~~~e~G~g~G~g~~vNvPL~----- 226 (436)
T PTZ00063 158 LELLKYH--ARVMYIDIDVHHGDGVEEAFYVTHRVMTVSFHKFG--DFFPGTG--DVTDIGVAQGKYYSVNVPLN----- 226 (436)
T ss_pred HHHHHhC--CeEEEEeCCCCCCcchHHHhccCCCeEEEEeccCC--CcCCCCC--CccccCCCCCCceEEEeeCC-----
Confidence 9999764 79999999999999999999999999999999984 5999975 57899999999999999996
Q ss_pred chHHHHHHHHhhhhhhhcCCccccchhhhHHHHHHhhhCCCCCCCCCCCCCCCCCccccccchhHhHhhhccCccchhhh
Q psy14515 236 DADYMAVFHQVLLPMVAEGGYCLKSLAEGAALTLRALLDDPCPNFETLGTPSERPKIWKEGKQCLVLALKHIVPQNSILS 315 (586)
Q Consensus 236 D~DYlaif~~vl~p~aleggy~~~sl~~~~~~t~~~llGdp~p~~~~~~~p~~~p~~w~~~r~~~~~~~~h~~~~~~i~~ 315 (586)
T Consensus 227 -------------------------------------------------------------------------------- 226 (436)
T PTZ00063 227 -------------------------------------------------------------------------------- 226 (436)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhhhhhhhhccCCCCCCCCccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEEcCCcCCC
Q psy14515 316 NLDRASRRFKLLTFVHLPAENTDVPLLFLLQIPGCYPHRTKSKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACV 395 (586)
Q Consensus 316 ~~~~~~~r~a~~~~~hs~~~~~d~~~~f~~~i~~~~p~~~~~~g~gd~~yl~a~~~ivlPi~~~f~PdlVlvsaGfDa~~ 395 (586)
.|++|.+|+.+|+.+|.|++.+|+||+||||||||++.
T Consensus 227 ------------------------------------------~G~~D~~Y~~~f~~ii~~~i~~f~Pd~IvvqaG~D~~~ 264 (436)
T PTZ00063 227 ------------------------------------------DGIDDDSFVDLFKPVISKCVEVYRPGAIVLQCGADSLT 264 (436)
T ss_pred ------------------------------------------CCCCHHHHHHHHHHHHHHHHHHhCCCEEEEECCccccC
Confidence 37889999999999999999999999999999999999
Q ss_pred CCcCcccccCHHHHHHHHHHHHHhcCCcEEEEcCCCCCcchHHHHHHHHHHHHcCCC
Q psy14515 396 NDPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYAMTLCTKALLGDP 452 (586)
Q Consensus 396 ~DplG~~~vt~~~y~~~t~~L~~la~grvv~vLEGGYn~~~ia~~~~~~~~~Llg~~ 452 (586)
+||||+++||+++|+++++.++++ ++|+++++||||++.++++||+..+..++|.+
T Consensus 265 ~DpLg~l~Lt~~g~~~~~~~~~~~-~~pil~l~gGGY~~~~lar~w~~~t~~~~~~~ 320 (436)
T PTZ00063 265 GDRLGRFNLTIKGHAACVEFVRSL-NIPLLVLGGGGYTIRNVARCWAYETGVILNKH 320 (436)
T ss_pred CCCCCCcccCHHHHHHHHHHHHhc-CCCEEEEeCccCCchHHHHHHHHHHHHHhCCc
Confidence 999999999999999999999996 68999999999999999999999999999963
No 5
>KOG1343|consensus
Probab=100.00 E-value=7.9e-71 Score=622.72 Aligned_cols=459 Identities=38% Similarity=0.617 Sum_probs=388.1
Q ss_pred chHHHHHHHHHHcCCCCCceEeCC-CCCCHHHHHccCChHHHHHHhhhcCCCchHHHhhhhcCCCccccCCChhhhhhhh
Q psy14515 2 LKHVNIKDPCKELGLVQRCKFIQP-REATQEEILKKHTIEQIELLATTEGSTDVDALEQLSSHYDAIYIHPSSYKLSLLS 80 (586)
Q Consensus 2 ~K~~~I~~~L~~~GL~~~~~~i~p-r~At~eeLl~vHs~eYV~~L~~~~~~~~~~~~~~l~~~~d~~~~~~~t~~~a~l~ 80 (586)
+|++++.+.+++.++.++|.+..+ +.++.++++.+|+++|++.+.....+...+.++.++..+|.+|+++.++.++.+
T Consensus 56 e~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~ke~~~~~~~t~~~~~e~~l~~~~~~~~~~~~~~~s~~~a~~- 134 (797)
T KOG1343|consen 56 ERLRQIEEELERHRLEQPLLILRNKREAKESAVASVHVKEKLQEFLLSKKMTAEEGLNHSSSRYPSLYYTSASHSSADQ- 134 (797)
T ss_pred hHHHHHHHHhhccCCccccccccchhhcccchhcccccHHHHHHHHhhhhhcchhhhhcccCCCCcceecCCchhhhcc-
Confidence 577788889999999999988777 999999999999999999998887555555577788889999999999999988
Q ss_pred cCchhHHhhhcccCCCCCchhhhHHHhhccHHHHHHHHhccCcccceEeecCCCCCCCccccCCccccchHHHHHHHHHh
Q psy14515 81 AGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNGMAVIRPPGHHAMKSEYCGYCFFNNVALAAQHALD 160 (586)
Q Consensus 81 ~g~~~~~~~~~~~~~~~~~~~~aa~~AaG~ti~aa~~V~~g~~~ngfAivRPPGHHA~~~~a~GFC~fNNvAIAAk~al~ 160 (586)
++|+.+.+.+.++.|++.|++|.+|||||||+++...|||+|||||++++.++.
T Consensus 135 --------------------------a~~~~~~~~~~~~~~~~~n~~a~v~p~~hhsep~~~~~~cl~n~Va~~~~~~~~ 188 (797)
T KOG1343|consen 135 --------------------------ASGSLSGSYKAVLAGKASNGKADFRPPGHHSEPNLKVGFCLFNNVAERRSSPLL 188 (797)
T ss_pred --------------------------cCcccccccccccCCcccCccCcCCCCCCccccchhcchhHHHHHHHHhhcccc
Confidence 899999999999999999999999999999999999999999999999999988
Q ss_pred hCCCCeEEEEecccccCccceecccc--CCceEEEeeccccCCCCCCCCCCCCCccccccCCccceeeecCCCCCCCchH
Q psy14515 161 NTSVSRVLIVDWDVHHGQATQQMFYN--DNRVVYFSIHRYEHGTFWPNLRESEYDHIGEGIGKGYNFNIPLNKTHMKDAD 238 (586)
Q Consensus 161 ~~g~~RVlIVD~DVHHGNGTQ~iFy~--dp~VlyiSiHry~~g~fyP~~~~~~~~~~G~g~G~G~nvNVPl~~~g~~D~D 238 (586)
++..+||+|+|||+|||+|||..|++ |++|+|+|+|++++|.|||+...+.++.+|.|.|.||++|+||+..|++|.|
T Consensus 189 ~~~~rri~i~d~dvh~g~Gtq~~~~~~~d~~vl~~s~~r~e~~~f~P~~~~g~~~~~~~g~~~g~~~nl~~~~~g~~~~d 268 (797)
T KOG1343|consen 189 RRKKRRILIVDWDVHHGPGTQPSSPNNGDQRVLYFSLHRLETGPFLPNITLGLATLRGGGPGLGQTGNLPWNQVGMTDAD 268 (797)
T ss_pred ccccceeEeecccccCCCCCCCccCCCcccccccccchhcccCCcCCCCccchHHHhCcCCCcceeeccchhhcCCcchh
Confidence 87789999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhh---------------------------------------------------hcCCccccchhhhHHH
Q psy14515 239 YMAVFHQVLLPMV---------------------------------------------------AEGGYCLKSLAEGAAL 267 (586)
Q Consensus 239 Ylaif~~vl~p~a---------------------------------------------------leggy~~~sl~~~~~~ 267 (586)
|.++|.++++|.+ +|||||+.+++++ ++
T Consensus 269 y~~~~~~~~~~~~~efqp~Lv~~sag~dA~lg~~~~~~m~~tP~~~~~~~~~~~~~~r~~l~v~~e~gy~le~l~~~-~~ 347 (797)
T KOG1343|consen 269 YEAAFLHVLLPHASEFQPDLLLVSAGFDALLGDGPVGLMAQTPLGYAHRTSMHRPLGRGQLVVVLEGGYFLEKLAQS-QL 347 (797)
T ss_pred hhhhhhccCccchhhcCcceEEeeccccccccCcccCcccCCcccHHHHhccccccccCccceecchhHHHHHHHHh-hh
Confidence 9999999988886 7899999999999 99
Q ss_pred HHHhhhCCCCCCCCCCCCCCC-------------CCcccccc-----chhHhH--------hh------------hcc--
Q psy14515 268 TLRALLDDPCPNFETLGTPSE-------------RPKIWKEG-----KQCLVL--------AL------------KHI-- 307 (586)
Q Consensus 268 t~~~llGdp~p~~~~~~~p~~-------------~p~~w~~~-----r~~~~~--------~~------------~h~-- 307 (586)
.++++||||+|.+.....||+ .+ ||.-. ..+..+ ++ .+.
T Consensus 348 ~~~~llg~~~~~~~~~~~p~~~~~e~~~~~~~~~~~-~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (797)
T KOG1343|consen 348 VLNKLLGKPIEQLRQPGSPKEEAEEELQSVQAVQED-RWPCEGGSTSADSSALVQDQLEQVGLVKEEDEPVRSDEDGEIG 426 (797)
T ss_pred hHHhhcCCCccccccCCCchHHHHHHhhhhHHHhhc-ccccccCCcchhhhhhhhhhhhhhhhhhhccccccCCCCCccc
Confidence 999999999998877777777 44 88711 111000 00 000
Q ss_pred ---Cc----cchhhhhh-----------------hh---hh--hh------------------hhhhhhccCCCC-----
Q psy14515 308 ---VP----QNSILSNL-----------------DR---AS--RR------------------FKLLTFVHLPAE----- 335 (586)
Q Consensus 308 ---~~----~~~i~~~~-----------------~~---~~--~r------------------~a~~~~~hs~~~----- 335 (586)
.+ ..+..... .+ .. +| ..++.++|+..+
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~r~~t~~~~gl~~~c~r~at~~el~~vHs~~~~~~~~ 506 (797)
T KOG1343|consen 427 EDELPAAGMQAPFLKQQAEHALSADQAELELAGLDRSRSPESPARFTTGLHTGLLGKCERIATLEELQLVHSEAHVLLYG 506 (797)
T ss_pred cccccchhcccchhhhhhhhcccccccccccccccccCCcccchhhhcccccccccccccccchhhhhhcccchhhcccc
Confidence 00 00000000 00 00 22 224666666331
Q ss_pred ------------------------------------------------------------------CCCCcccccc----
Q psy14515 336 ------------------------------------------------------------------NTDVPLLFLL---- 345 (586)
Q Consensus 336 ------------------------------------------------------------------~~d~~~~f~~---- 345 (586)
+...++||||
T Consensus 507 ~~~~~~~~~~~~~~~~~~~~i~~~~dt~~~~~~ssga~~~av~~v~~~~~~~~~g~avvRppGHha~~~~a~gfc~fn~v 586 (797)
T KOG1343|consen 507 SRKLLGDLSLKFESRLPCGGIGVDSDTWWNELHSSGAARLAVGCVIELAFKVASGFAVVRPPGHHAEASTAMGFCFFNSV 586 (797)
T ss_pred hhhhcccccchhhhhccccceeecccHHHHHHHHHHHHHHhcchhhhhhhhhhcceeEecCCccccccCCcceeeeecch
Confidence 4556789998
Q ss_pred ----------------------------------------cc------CC-CCCCCC-------------------CCCC
Q psy14515 346 ----------------------------------------QI------PG-CYPHRT-------------------KSKG 359 (586)
Q Consensus 346 ----------------------------------------~i------~~-~~p~~~-------------------~~~g 359 (586)
|| +| |||.+. +.+.
T Consensus 587 aiaak~l~~~~~~~rilivdwDvhhgngtq~~f~~~~~vlyislhr~~~G~~fp~~g~~~e~g~~~g~g~~vNv~~~~~~ 666 (797)
T KOG1343|consen 587 AIAAKLLQQRSKASRILIVDWDVHHGNGTQQAFYSDPSVLYISLHRHDDGNFFPGSGAPDEVGKGEGVGFNVNVAWTGGL 666 (797)
T ss_pred hhhhHHhhhhhhhcceEEEeecccCCcceeeeeccCccccccccchhccCCcCCCCCCchhcccccccceeecccccCCC
Confidence 22 45 888772 4556
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCCEEEEEcCCcCCCCCcCcccccCHHHHHHHHHHHHHhcCCcEEEEcCCCCCcchHHH
Q psy14515 360 MSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISY 439 (586)
Q Consensus 360 ~gd~~yl~a~~~ivlPi~~~f~PdlVlvsaGfDa~~~DplG~~~vt~~~y~~~t~~L~~la~grvv~vLEGGYn~~~ia~ 439 (586)
++|.+|+.||+.+|+||+++|+||+|+||+|||++.+||||+++||+++|+.||++|+++|+||++.+|||||+++++++
T Consensus 667 ~~D~ey~~a~~~vv~Pia~~F~pd~VlvSagfDaa~~dplg~~~vt~~~~~~lt~~l~~lagGRvv~~LEggy~lt~is~ 746 (797)
T KOG1343|consen 667 DPDAEYLAAFRTVVMPIAYEFNPDLVLVSAGFDAAEGDPLGGYKVTAECFGYLTQQLMGLAGGRVVLALEGGYDLTAISD 746 (797)
T ss_pred CCCHHHHHHHHHhhHHHHHHhCCCeEEEeccccccccCccccccccHhHHHHHHHHHHHhcCCcEEEEecCCcchhhhhH
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCcccccccccccchhhhhhhhhcCCccccccccCCCCccccccchhhhhHHHHHHHHHHHhcCc
Q psy14515 440 AMTLCTKALLGDPLPLLESDLDINSSAVTSIKVIIIINNNNSVYLYCSHRTENPFAFLSFLSLKNITETILNCIYEHRPY 519 (586)
Q Consensus 440 ~~~~~~~~Llg~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 519 (586)
++.+|+++|+|++.|+++.. |+ ..+++.+++.+|++++.+|++|
T Consensus 747 s~~~~~~~llg~~~p~~~~~-----------------------~~-------------~~~~~~~a~~~l~~~~~~~~~~ 790 (797)
T KOG1343|consen 747 SAEACVRALLGDSLPPLSEA-----------------------YL-------------PQKPNSNAVATLEKVIEVQSKY 790 (797)
T ss_pred HHHHHHHhccCCCCCCcccc-----------------------cc-------------CCCcchHHHHHHHHHHHhhhcc
Confidence 99999999999999997511 11 1234456999999999999999
Q ss_pred cccccc
Q psy14515 520 WNCYKF 525 (586)
Q Consensus 520 W~~l~~ 525 (586)
|+|++.
T Consensus 791 w~~~~~ 796 (797)
T KOG1343|consen 791 WSCLQG 796 (797)
T ss_pred cccccC
Confidence 999985
No 6
>KOG1342|consensus
Probab=100.00 E-value=4.9e-58 Score=474.46 Aligned_cols=290 Identities=29% Similarity=0.514 Sum_probs=261.0
Q ss_pred hHHHHHHHHHHcCCCCCceEeCCCCCCHHHHHccCChHHHHHHhhhcCCCc---hHHHhhhhcCCCccccCCChhhhhhh
Q psy14515 3 KHVNIKDPCKELGLVQRCKFIQPREATQEEILKKHTIEQIELLATTEGSTD---VDALEQLSSHYDAIYIHPSSYKLSLL 79 (586)
Q Consensus 3 K~~~I~~~L~~~GL~~~~~~i~pr~At~eeLl~vHs~eYV~~L~~~~~~~~---~~~~~~l~~~~d~~~~~~~t~~~a~l 79 (586)
|+....+.+..+||.+++++.+|..|+.+||+++||.+||++|++..+... ...+.++....| .+++.+.++.+.+
T Consensus 32 R~~mth~Lv~~YgL~k~M~i~~p~~a~~~dm~~FHt~eYi~fL~~V~p~n~~~~~~~~~~fNvg~D-CPvF~gL~~fC~~ 110 (425)
T KOG1342|consen 32 RIRMTHSLVLNYGLYKKMEIYRPDKASAQDMTRFHTDEYINFLQSVTPENMETFNKELKQFNVGED-CPVFDGLYDYCQL 110 (425)
T ss_pred eehhhhHHHHhcchhhceeeccCCCCCHHHHHhhchHHHHHHHhhCCcccccccchHHHhcCCCCC-CccccCHHHHHHH
Confidence 778899999999999999999999999999999999999999999875543 223555554444 4788888888887
Q ss_pred hcCchhHHhhhcccCCCCCchhhhHHHhhccHHHHHHHHhccCcccceEeecCCC-CCCCccccCCccccchHHHHHHHH
Q psy14515 80 SAGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNGMAVIRPPG-HHAMKSEYCGYCFFNNVALAAQHA 158 (586)
Q Consensus 80 ~~g~~~~~~~~~~~~~~~~~~~~aa~~AaG~ti~aa~~V~~g~~~ngfAivRPPG-HHA~~~~a~GFC~fNNvAIAAk~a 158 (586)
.+||+|.||..+-.++ ..+||+|++| |||.+++|+||||+|||++|+..|
T Consensus 111 ---------------------------~~GgSl~aa~kLn~~~--~dIaINW~GGlHHAKK~eASGFCYvNDIVL~ILeL 161 (425)
T KOG1342|consen 111 ---------------------------YTGGSLNAAQKLNRGE--CDIAINWAGGLHHAKKSEASGFCYVNDIVLGILEL 161 (425)
T ss_pred ---------------------------hcccchHHHHHhCCCC--ceEEEecCcccccccccccCcceeehHHHHHHHHH
Confidence 9999999999998886 4699999999 999999999999999999999999
Q ss_pred HhhCCCCeEEEEecccccCccceeccccCCceEEEeeccccCCCCCCCCCCCCCccccccCCccceeeecCCCCCCCchH
Q psy14515 159 LDNTSVSRVLIVDWDVHHGQATQQMFYNDNRVVYFSIHRYEHGTFWPNLRESEYDHIGEGIGKGYNFNIPLNKTHMKDAD 238 (586)
Q Consensus 159 l~~~g~~RVlIVD~DVHHGNGTQ~iFy~dp~VlyiSiHry~~g~fyP~~~~~~~~~~G~g~G~G~nvNVPl~~~g~~D~D 238 (586)
++.+ +|||+||+|||||||+|++||..+||+|+|+|.|+++ |||||| +..++|.|+|+.|.|||||. +|
T Consensus 162 lK~h--~RVLYIDIDvHHGDGVEeAFy~TDRVmTvSfHKyg~~-fFPGTG--~l~d~G~~kGkyyavNVPL~-dG----- 230 (425)
T KOG1342|consen 162 LKYH--KRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKYGPG-FFPGTG--DLSDIGAGKGKYYAVNVPLK-DG----- 230 (425)
T ss_pred HHhC--CceEEEEecccCCccHHHHHhccceeEEEEEEeccCC-CCCCCC--cceeccCCCCceEEEccchh-cc-----
Confidence 9876 6999999999999999999999999999999999755 999975 78999999999999999996 44
Q ss_pred HHHHHHHhhhhhhhcCCccccchhhhHHHHHHhhhCCCCCCCCCCCCCCCCCccccccchhHhHhhhccCccchhhhhhh
Q psy14515 239 YMAVFHQVLLPMVAEGGYCLKSLAEGAALTLRALLDDPCPNFETLGTPSERPKIWKEGKQCLVLALKHIVPQNSILSNLD 318 (586)
Q Consensus 239 Ylaif~~vl~p~aleggy~~~sl~~~~~~t~~~llGdp~p~~~~~~~p~~~p~~w~~~r~~~~~~~~h~~~~~~i~~~~~ 318 (586)
T Consensus 231 -------------------------------------------------------------------------------- 230 (425)
T KOG1342|consen 231 -------------------------------------------------------------------------------- 230 (425)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhhhhhccCCCCCCCCccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEEcCCcCCCCCc
Q psy14515 319 RASRRFKLLTFVHLPAENTDVPLLFLLQIPGCYPHRTKSKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDP 398 (586)
Q Consensus 319 ~~~~r~a~~~~~hs~~~~~d~~~~f~~~i~~~~p~~~~~~g~gd~~yl~a~~~ivlPi~~~f~PdlVlvsaGfDa~~~Dp 398 (586)
..|..|...|..||-|+.+.|+|+.|+++||.|+..||+
T Consensus 231 -----------------------------------------idD~sy~~if~pIi~~v~e~f~P~AiVLQCGaDSL~gDR 269 (425)
T KOG1342|consen 231 -----------------------------------------IDDESYESIFKPIISKVMERFQPEAIVLQCGADSLAGDR 269 (425)
T ss_pred -----------------------------------------CCcHHHHHHHHHHHHHHHHHhCCceEEEEcCCccccCCc
Confidence 455566666777888999999999999999999999999
Q ss_pred CcccccCHHHHHHHHHHHHHhcCCcEEEEcCCCCCcchHHHHHHHHHHHHcCCCCCC
Q psy14515 399 LGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYAMTLCTKALLGDPLPL 455 (586)
Q Consensus 399 lG~~~vt~~~y~~~t~~L~~la~grvv~vLEGGYn~~~ia~~~~~~~~~Llg~~~p~ 455 (586)
||.++||..|-+...+.++++- -+++++.+|||++.++|+||+..+..++|..+|.
T Consensus 270 lgcFnLsi~Gh~~Cv~fvksfn-~pllvlGGGGYT~rNVARcWtYeT~v~~~~~~~~ 325 (425)
T KOG1342|consen 270 LGCFNLSIKGHAECVKFVKSFN-LPLLVLGGGGYTLRNVARCWTYETGVLLDQELPN 325 (425)
T ss_pred cceeeecchhHHHHHHHHHHcC-CcEEEecCCccchhhhHHHHHHHhhhhcCccccc
Confidence 9999999999999999999984 6899999999999999999999999999987663
No 7
>KOG1343|consensus
Probab=100.00 E-value=1.4e-45 Score=417.81 Aligned_cols=236 Identities=39% Similarity=0.662 Sum_probs=203.1
Q ss_pred cCCCCCceEeCCCCCCHHHHHccCChHHHHHHhhhcCCCchHHHhhhhcCCCccccCCChhhhhhhhcCchhHHhhhccc
Q psy14515 14 LGLVQRCKFIQPREATQEEILKKHTIEQIELLATTEGSTDVDALEQLSSHYDAIYIHPSSYKLSLLSAGSTIELRRNQKR 93 (586)
Q Consensus 14 ~GL~~~~~~i~pr~At~eeLl~vHs~eYV~~L~~~~~~~~~~~~~~l~~~~d~~~~~~~t~~~a~l~~g~~~~~~~~~~~ 93 (586)
.|++.+|+.+ ||.+|++.||+..|+..+.+.....+.+...+....+..+++.++++..+.+
T Consensus 478 ~gl~~~c~r~----at~~el~~vHs~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~dt~~~~~~-------------- 539 (797)
T KOG1343|consen 478 TGLLGKCERI----ATLEELQLVHSEAHVLLYGSRKLLGDLSLKFESRLPCGGIGVDSDTWWNELH-------------- 539 (797)
T ss_pred cccccccccc----cchhhhhhcccchhhcccchhhhcccccchhhhhccccceeecccHHHHHHH--------------
Confidence 6889999988 9999999999999999977443333222222222334557778888777766
Q ss_pred CCCCCchhhhHHHhhccHHHHHHHHhccCcccceEeecCCCCCCCccccCCccccchHHHHHHHHHhhCCCCeEEEEecc
Q psy14515 94 NGSHSSSYKLSLLSAGSTIELVDNICRGEIKNGMAVIRPPGHHAMKSEYCGYCFFNNVALAAQHALDNTSVSRVLIVDWD 173 (586)
Q Consensus 94 ~~~~~~~~~aa~~AaG~ti~aa~~V~~g~~~ngfAivRPPGHHA~~~~a~GFC~fNNvAIAAk~al~~~g~~RVlIVD~D 173 (586)
+-.++++++++.++++..+ .+|||++|||||||.+..+||||+|||+|||++++++...++||+|+|||
T Consensus 540 ------ssga~~~av~~v~~~~~~~-----~~g~avvRppGHha~~~~a~gfc~fn~vaiaak~l~~~~~~~rilivdwD 608 (797)
T KOG1343|consen 540 ------SSGAARLAVGCVIELAFKV-----ASGFAVVRPPGHHAEASTAMGFCFFNSVAIAAKLLQQRSKASRILIVDWD 608 (797)
T ss_pred ------HHHHHHHhcchhhhhhhhh-----hcceeEecCCccccccCCcceeeeecchhhhhHHhhhhhhhcceEEEeec
Confidence 2234566777777666665 44899999999999999999999999999999999988888999999999
Q ss_pred cccCccceeccccCCceEEEeeccccCCCCCCCCCCCCCccccccCCccceeeecCCCCCCCchHHHHHHHHhhhhhh--
Q psy14515 174 VHHGQATQQMFYNDNRVVYFSIHRYEHGTFWPNLRESEYDHIGEGIGKGYNFNIPLNKTHMKDADYMAVFHQVLLPMV-- 251 (586)
Q Consensus 174 VHHGNGTQ~iFy~dp~VlyiSiHry~~g~fyP~~~~~~~~~~G~g~G~G~nvNVPl~~~g~~D~DYlaif~~vl~p~a-- 251 (586)
||||||||++||.||+|||+|+|+|++|+|||++ +..+++|.|.|+|||+||||+..-++|.+|+.+|+.+++|++
T Consensus 609 vhhgngtq~~f~~~~~vlyislhr~~~G~~fp~~--g~~~e~g~~~g~g~~vNv~~~~~~~~D~ey~~a~~~vv~Pia~~ 686 (797)
T KOG1343|consen 609 VHHGNGTQQAFYSDPSVLYISLHRHDDGNFFPGS--GAPDEVGKGEGVGFNVNVAWTGGLDPDAEYLAAFRTVVMPIAYE 686 (797)
T ss_pred ccCCcceeeeeccCccccccccchhccCCcCCCC--CCchhcccccccceeecccccCCCCCCHHHHHHHHHhhHHHHHH
Confidence 9999999999999999999999999999999997 578999999999999999999777889999999999999998
Q ss_pred ------------------------------------------------hcCCccccchhhhHHHHHHhhhCCCCCCC
Q psy14515 252 ------------------------------------------------AEGGYCLKSLAEGAALTLRALLDDPCPNF 280 (586)
Q Consensus 252 ------------------------------------------------leggy~~~sl~~~~~~t~~~llGdp~p~~ 280 (586)
|||||++++..+++.+++++|+|++.|.+
T Consensus 687 F~pd~VlvSagfDaa~~dplg~~~vt~~~~~~lt~~l~~lagGRvv~~LEggy~lt~is~s~~~~~~~llg~~~p~~ 763 (797)
T KOG1343|consen 687 FNPDLVLVSAGFDAAEGDPLGGYKVTAECFGYLTQQLMGLAGGRVVLALEGGYDLTAISDSAEACVRALLGDSLPPL 763 (797)
T ss_pred hCCCeEEEeccccccccCccccccccHhHHHHHHHHHHHhcCCcEEEEecCCcchhhhhHHHHHHHHhccCCCCCCc
Confidence 99999999999999999999999999874
No 8
>KOG1344|consensus
Probab=100.00 E-value=1.2e-33 Score=277.75 Aligned_cols=270 Identities=24% Similarity=0.399 Sum_probs=212.9
Q ss_pred chHHHHHHHHHHcCCCCCceEeCCCCCCHHHHHccCChHHHHHHhhhcCCCchHHHhhhhcCCCccccCCChhhhhhhhc
Q psy14515 2 LKHVNIKDPCKELGLVQRCKFIQPREATQEEILKKHTIEQIELLATTEGSTDVDALEQLSSHYDAIYIHPSSYKLSLLSA 81 (586)
Q Consensus 2 ~K~~~I~~~L~~~GL~~~~~~i~pr~At~eeLl~vHs~eYV~~L~~~~~~~~~~~~~~l~~~~d~~~~~~~t~~~a~l~~ 81 (586)
.|+..|.+.|.+.+++..-.+++|+++|.++|++||+.+|++.|+..-.... +.+++. -.|+.+-..+...+
T Consensus 40 ~Kwg~v~kfL~~~~~l~d~~lvEp~e~t~e~L~rvHtr~YLkslr~s~~vA~---I~EiP~---v~flPn~~iqrk~L-- 111 (324)
T KOG1344|consen 40 AKWGHVHKFLCAMNLLTDETLVEPNEATKEDLLRVHTRKYLKSLRWSIKVAQ---ITEIPF---VGFLPNCIIQRKLL-- 111 (324)
T ss_pred cchhHHHHHHHHhccccccccccCcccCHHHHHhHhhHHHHHHhhccceeeE---EEeccc---cccCchhhhhhhhc--
Confidence 4788999999999999998999999999999999999999999987543321 222221 11232323333333
Q ss_pred CchhHHhhhcccCCCCCchhhhHHHhhccHHHHHHHHhccCcccceEeecCCC-CCCCccccCCccccchHHHHHHHHHh
Q psy14515 82 GSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNGMAVIRPPG-HHAMKSEYCGYCFFNNVALAAQHALD 160 (586)
Q Consensus 82 g~~~~~~~~~~~~~~~~~~~~aa~~AaG~ti~aa~~V~~g~~~ngfAivRPPG-HHA~~~~a~GFC~fNNvAIAAk~al~ 160 (586)
...|..+|+||.|++.. ++.|+||+-.+| |||..+++.|||.|-|+.+|+..+..
T Consensus 112 --------------------rPlR~QagGtilA~kLA----le~GWAINvGGGFHHcss~rGGGFC~yADItl~I~~lFe 167 (324)
T KOG1344|consen 112 --------------------RPLRLQAGGTILAAKLA----LERGWAINVGGGFHHCSSSRGGGFCAYADITLAIFFLFE 167 (324)
T ss_pred --------------------cceeeccCceeehhhhh----hhcCeEEeecCccceeccCCCCceeehhhHHHHHHHHHh
Confidence 23355889999999876 467899999999 99999999999999999999999999
Q ss_pred hCCCCeEEEEecccccCccceeccccCCceEEEeeccccCCCCCCCCCCCCCccccccCCccceeeecCCCCCCCchHHH
Q psy14515 161 NTSVSRVLIVDWDVHHGQATQQMFYNDNRVVYFSIHRYEHGTFWPNLRESEYDHIGEGIGKGYNFNIPLNKTHMKDADYM 240 (586)
Q Consensus 161 ~~g~~RVlIVD~DVHHGNGTQ~iFy~dp~VlyiSiHry~~g~fyP~~~~~~~~~~G~g~G~G~nvNVPl~~~g~~D~DYl 240 (586)
+..+.|++|||+|.|+|||.+.-|.+| .|..+.+. +...||... .
T Consensus 168 r~~isr~mivDLDAHQGNghErdf~~~-~vyi~d~y---nr~iyp~D~-------------------------------~ 212 (324)
T KOG1344|consen 168 RKAISRAMIVDLDAHQGNGHERDFEDD-AVYIFDMY---NRFIYPRDH-------------------------------V 212 (324)
T ss_pred hhhhhheEEEecccccCCccccccccc-eeehhhhh---hhhccchhH-------------------------------H
Confidence 888999999999999999999999988 55555543 234577521 1
Q ss_pred HHHHHhhhhhhhcCCccccchhhhHHHHHHhhhCCCCCCCCCCCCCCCCCccccccchhHhHhhhccCccchhhhhhhhh
Q psy14515 241 AVFHQVLLPMVAEGGYCLKSLAEGAALTLRALLDDPCPNFETLGTPSERPKIWKEGKQCLVLALKHIVPQNSILSNLDRA 320 (586)
Q Consensus 241 aif~~vl~p~aleggy~~~sl~~~~~~t~~~llGdp~p~~~~~~~p~~~p~~w~~~r~~~~~~~~h~~~~~~i~~~~~~~ 320 (586)
+ ...+| |
T Consensus 213 A------------------------k~~Ir-------------------------------------------------~ 219 (324)
T KOG1344|consen 213 A------------------------KESIR-------------------------------------------------C 219 (324)
T ss_pred H------------------------HHHhh-------------------------------------------------h
Confidence 0 00000 0
Q ss_pred hhhhhhhhhccCCCCCCCCccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEEcCCcCCCCCcCc
Q psy14515 321 SRRFKLLTFVHLPAENTDVPLLFLLQIPGCYPHRTKSKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLG 400 (586)
Q Consensus 321 ~~r~a~~~~~hs~~~~~d~~~~f~~~i~~~~p~~~~~~g~gd~~yl~a~~~ivlPi~~~f~PdlVlvsaGfDa~~~DplG 400 (586)
.++...|+.|++|+.-+.+.++..+.||+||+|+..||.|...|||||
T Consensus 220 --------------------------------kVEl~~gTeddeYLrkl~r~l~~sl~ef~Pd~VvYNAGTDiLeGDpLG 267 (324)
T KOG1344|consen 220 --------------------------------KVELRNGTEDDEYLRKLKRCLMQSLAEFRPDMVVYNAGTDILEGDPLG 267 (324)
T ss_pred --------------------------------eeeeecCCCchHHHHHHHHHHHHHHHhhCCcEEEEeCCCccccCCCCC
Confidence 112235899999999999999999999999999999999999999999
Q ss_pred ccccCHHHHHHHHHHHHHhcC---CcEEEEcCCCCCcch---HHHHHHH
Q psy14515 401 GCKVSPEAYAHFTHWLKALAQ---GRIILALEGGYNISS---ISYAMTL 443 (586)
Q Consensus 401 ~~~vt~~~y~~~t~~L~~la~---grvv~vLEGGYn~~~---ia~~~~~ 443 (586)
++.+||+|.-...+++.+.+. -++|.++.|||-..+ |++++..
T Consensus 268 ~L~ISp~Gi~~RDelVFr~~R~~~iPvvMltSGGY~K~sArvIaDSI~N 316 (324)
T KOG1344|consen 268 NLAISPEGIIERDELVFRTFRALGIPVVMLTSGGYLKASARVIADSIVN 316 (324)
T ss_pred CeeecccccchhhHHHHHHHHHcCCcEEEEecCceehhhhhhhHHHHHh
Confidence 999999999999999988874 369999999997643 4444443
No 9
>PTZ00346 histone deacetylase; Provisional
Probab=94.51 E-value=0.053 Score=59.87 Aligned_cols=29 Identities=28% Similarity=0.425 Sum_probs=26.8
Q ss_pred hcCCccccchhhhHHHHHHhhhCCCCCCC
Q psy14515 252 AEGGYCLKSLAEGAALTLRALLDDPCPNF 280 (586)
Q Consensus 252 leggy~~~sl~~~~~~t~~~llGdp~p~~ 280 (586)
+||||++.+|+.+.+..+..++|.+.|.-
T Consensus 314 leGGY~~~~lar~w~~~t~~l~g~~i~~~ 342 (429)
T PTZ00346 314 GGGGYTIRNVAKLWAYETSILTGHPLPPN 342 (429)
T ss_pred eCCcCCccHHHHHHHHHHHHHcCCCCCCC
Confidence 89999999999999999999999988743
No 10
>PTZ00063 histone deacetylase; Provisional
Probab=91.17 E-value=0.85 Score=50.74 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=23.4
Q ss_pred hcCCccccchhhhHHHHHHhhhCCC
Q psy14515 252 AEGGYCLKSLAEGAALTLRALLDDP 276 (586)
Q Consensus 252 leggy~~~sl~~~~~~t~~~llGdp 276 (586)
+||||+.++++.+.+....+++|-+
T Consensus 296 ~gGGY~~~~lar~w~~~t~~~~~~~ 320 (436)
T PTZ00063 296 GGGGYTIRNVARCWAYETGVILNKH 320 (436)
T ss_pred eCccCCchHHHHHHHHHHHHHhCCc
Confidence 7899999999999999999999964
No 11
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine. Histone deacetylases (HDA) catalyse the removal of the acetyl group. Histone deacetylases, acetoin utilization proteins and acetylpolyamine amidohydrolases are all members of this ancient protein superfamily []. HDAs function in multi-subunit complexes, reversing the acetylation of histones by histone acetyltransferases [, ], and are also believed to deacetylate general transcription factors such as TFIIF and sequence-specific transcription factors such as p53 []. Thus, HDAs contribute to the regulation of transcription, in particular transcriptional repression []. At N-terminal tails of histones, removal of the acetyl group from the epsilon-amino group of a lysine side chain will restore its positivecharge, which may stabilise the histone-DNA interaction and prevent activating transcription factors binding to promoter elements []. HDAs play important roles in the cell cycle and differentiation, and their deregulation can contribute to the development of cancer [, ]. This entry represents the structural domain found in histone deacetylases. It consists of a 3-layer(alpha-beta-alpha) sandwich.; PDB: 4A69_A 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G 3MAX_C 3MEN_D 1T64_B ....
Probab=89.35 E-value=0.24 Score=52.33 Aligned_cols=21 Identities=48% Similarity=0.574 Sum_probs=17.8
Q ss_pred hcCCccccchhhhHHHHHHhh
Q psy14515 252 AEGGYCLKSLAEGAALTLRAL 272 (586)
Q Consensus 252 leggy~~~sl~~~~~~t~~~l 272 (586)
+||||+.++++.++...+++|
T Consensus 290 leGGY~~~~~~~~~~~~~~~L 310 (311)
T PF00850_consen 290 LEGGYNPESLARSWAAVIAAL 310 (311)
T ss_dssp E-S-SSHHHHHHHHHHHHHHH
T ss_pred ECCCCChhHHHHHHHHHHHHh
Confidence 899999999999999999887
No 12
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=78.51 E-value=2.9 Score=45.16 Aligned_cols=27 Identities=33% Similarity=0.340 Sum_probs=24.4
Q ss_pred hcCCccccchhhhHHHHHHhhhCCCCC
Q psy14515 252 AEGGYCLKSLAEGAALTLRALLDDPCP 278 (586)
Q Consensus 252 leggy~~~sl~~~~~~t~~~llGdp~p 278 (586)
+||||+..+|..++...+..|.|-+..
T Consensus 289 leGGY~~~~l~~~~~~~~~~l~~~~~~ 315 (340)
T COG0123 289 LEGGYNLDALARSLVAFLAGLAGLVEE 315 (340)
T ss_pred ecCCCChHHHHHHHHHHHHHHcCCCcc
Confidence 999999999999999999999996543
No 13
>PF09757 Arb2: Arb2 domain; InterPro: IPR019154 The fission yeast Argonaute siRNA chaperone (ARC) complex contains the Argonaute protein Ago1 and two previously uncharacterised proteins, Arb1 and Arb2, both of which are required for histone H3 Lys9 (H3-K9) methylation, heterochromatin assembly and siRNA generation []. This entry represents a region found in both Arb2 and the Hda1 protein. ; PDB: 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G.
Probab=77.83 E-value=1.6 Score=42.52 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHhcCccccccc
Q psy14515 504 NITETILNCIYEHRPYWNCYKF 525 (586)
Q Consensus 504 ~~~~~i~~~~~~~~~~W~~l~~ 525 (586)
.|.+++++|+.+|++||+||..
T Consensus 13 ~a~~~v~~v~~~qs~yw~~l~~ 34 (178)
T PF09757_consen 13 SAFETVKNVRRIQSKYWKCLNP 34 (178)
T ss_dssp HHHHHHHHHHHHHTTT-GGGTS
T ss_pred HHeeeHHHHHHHHHHHHHHhcC
Confidence 3999999999999999999964
No 14
>KOG0121|consensus
Probab=72.49 E-value=2.7 Score=39.69 Aligned_cols=48 Identities=25% Similarity=0.501 Sum_probs=33.0
Q ss_pred CCCCCccccCCcccc-----chHHHHHHHHHhhCCCCeEEEEecccccCccce
Q psy14515 134 GHHAMKSEYCGYCFF-----NNVALAAQHALDNTSVSRVLIVDWDVHHGQATQ 181 (586)
Q Consensus 134 GHHA~~~~a~GFC~f-----NNvAIAAk~al~~~g~~RVlIVD~DVHHGNGTQ 181 (586)
|---..-.+|||||+ .++-.|.+|+-...--+|++-+|||.-.=+|-|
T Consensus 69 GLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~GF~eGRQ 121 (153)
T KOG0121|consen 69 GLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDAGFVEGRQ 121 (153)
T ss_pred ccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccccchhhhh
Confidence 333456789999997 355567777643322369999999987666665
No 15
>PRK13236 nitrogenase reductase; Reviewed
Probab=61.53 E-value=9.6 Score=39.93 Aligned_cols=32 Identities=25% Similarity=0.324 Sum_probs=22.0
Q ss_pred HHHHHHHHhhCCCCeEEEEecccccCccceeccc
Q psy14515 152 ALAAQHALDNTSVSRVLIVDWDVHHGQATQQMFY 185 (586)
Q Consensus 152 AIAAk~al~~~g~~RVlIVD~DVHHGNGTQ~iFy 185 (586)
|+-..+++.+.| +||++||+|.+++| |.-+|.
T Consensus 23 a~NLA~~La~~G-~rVLliD~D~q~~~-~~~l~~ 54 (296)
T PRK13236 23 SQNTLAAMAEMG-QRILIVGCDPKADS-TRLMLH 54 (296)
T ss_pred HHHHHHHHHHCC-CcEEEEEccCCCCc-cchhcc
Confidence 333444455555 79999999999877 655554
No 16
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=55.43 E-value=44 Score=31.77 Aligned_cols=62 Identities=13% Similarity=0.109 Sum_probs=39.1
Q ss_pred CCCChHHHHHHHHHHHHHHHHhcCCCEEEEEcCCcCCCCCcCcccccCHHHHHHHH-HHHHHh
Q psy14515 358 KGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFT-HWLKAL 419 (586)
Q Consensus 358 ~g~gd~~yl~a~~~ivlPi~~~f~PdlVlvsaGfDa~~~DplG~~~vt~~~y~~~t-~~L~~l 419 (586)
.|..-.+++.-|...+.+.+..++||+|+|..|.+=.....-+.-..+.+.|.... .++..+
T Consensus 46 ~G~t~~~~~~r~~~~~~~~~~~~~pd~V~i~~G~ND~~~~~~~~~~~~~~~~~~~~~~ii~~~ 108 (193)
T cd01835 46 RGDGSEDVAARWRAEWSRRGELNVPNRLVLSVGLNDTARGGRKRPQLSARAFLFGLNQLLEEA 108 (193)
T ss_pred CCCCHHHHHHHHHHHHHhhcccCCCCEEEEEecCcccccccCcccccCHHHHHHHHHHHHHHH
Confidence 45566677888887777666668999999999986443321112245666666544 333333
No 17
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=52.12 E-value=15 Score=36.31 Aligned_cols=20 Identities=25% Similarity=0.370 Sum_probs=15.5
Q ss_pred HhhCCCCeEEEEecccccCcc
Q psy14515 159 LDNTSVSRVLIVDWDVHHGQA 179 (586)
Q Consensus 159 l~~~g~~RVlIVD~DVHHGNG 179 (586)
+.+.| +||++||+|.++||=
T Consensus 25 la~~g-~~VlliD~D~~~~~~ 44 (251)
T TIGR01969 25 LAKLG-KKVLALDADITMANL 44 (251)
T ss_pred HHHCC-CeEEEEeCCCCCccc
Confidence 33445 799999999988873
No 18
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=45.03 E-value=45 Score=31.10 Aligned_cols=42 Identities=14% Similarity=0.263 Sum_probs=25.7
Q ss_pred HHHhcCCCEEEEEcCC-cCCCCCcCcccccCHHHHHHHHHHHHHhc
Q psy14515 376 IAYQFNPELVLVSAGY-DACVNDPLGGCKVSPEAYAHFTHWLKALA 420 (586)
Q Consensus 376 i~~~f~PdlVlvsaGf-Da~~~DplG~~~vt~~~y~~~t~~L~~la 420 (586)
.+.+++||+|+|..|. |...+-+ ..-..+.|..|..++++..
T Consensus 45 ~~~~~~p~~vvi~~G~ND~~~~~~---~~~~~~~~~~lv~~i~~~~ 87 (171)
T cd04502 45 LVLPYQPRRVVLYAGDNDLASGRT---PEEVLRDFRELVNRIRAKL 87 (171)
T ss_pred hhccCCCCEEEEEEecCcccCCCC---HHHHHHHHHHHHHHHHHHC
Confidence 3457899999999998 5433322 2223445566666666543
No 19
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=43.94 E-value=1e+02 Score=33.47 Aligned_cols=74 Identities=12% Similarity=0.225 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHhc--CCCEEEEEcCCcCCCCCcCcccccCHHHHHHHHHHHHHhcCCcEEEEcCCCCCcchHHHHH
Q psy14515 364 EYIAAFQQVILPIAYQF--NPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYAM 441 (586)
Q Consensus 364 ~yl~a~~~ivlPi~~~f--~PdlVlvsaGfDa~~~DplG~~~vt~~~y~~~t~~L~~la~grvv~vLEGGYn~~~ia~~~ 441 (586)
.|.+.+-..|--++.-+ +||.|++..|.- ..|.+ ...+.+.|..+|. |.++.|.+-..++ +
T Consensus 274 ~~~~~la~~Ia~l~~~l~g~pD~IV~gGGI~--e~~~l---------~~~I~~~l~~~a~---v~~~pg~~e~~al---a 336 (351)
T TIGR02707 274 AMAYQIAKEIGKMAVVLKGKVDAIVLTGGLA--YSKYF---------VSEIIKRVSFIAP---VLVYPGEDEMEAL---A 336 (351)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCEEEEcchhh--cCHHH---------HHHHHHHHHhhCC---EEEeCCcHHHHHH---H
Confidence 45555556667777888 899999999853 22332 5677777777773 6677886655444 4
Q ss_pred HHHHHHHcCCCCC
Q psy14515 442 TLCTKALLGDPLP 454 (586)
Q Consensus 442 ~~~~~~Llg~~~p 454 (586)
+...|+|.|...|
T Consensus 337 ~ga~rv~~~~e~~ 349 (351)
T TIGR02707 337 EGALRVLRGEEKP 349 (351)
T ss_pred HhHHHHhcCCccc
Confidence 5567778886544
No 20
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=39.90 E-value=36 Score=34.77 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=15.8
Q ss_pred HhhCCCCeEEEEecccccCccceec
Q psy14515 159 LDNTSVSRVLIVDWDVHHGQATQQM 183 (586)
Q Consensus 159 l~~~g~~RVlIVD~DVHHGNGTQ~i 183 (586)
+.+.| +||++||.|.+ ||.|...
T Consensus 24 La~~G-~~VlliD~D~q-~~~~~~~ 46 (275)
T TIGR01287 24 LAEMG-KKVMIVGCDPK-ADSTRLL 46 (275)
T ss_pred HHHCC-CeEEEEeCCCC-CCccccc
Confidence 33445 79999999997 4445433
No 21
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=39.22 E-value=91 Score=29.47 Aligned_cols=30 Identities=10% Similarity=0.278 Sum_probs=22.3
Q ss_pred CCCChHHHHHHHHHHHHHHHHhcCCCEEEEEcCCc
Q psy14515 358 KGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYD 392 (586)
Q Consensus 358 ~g~gd~~yl~a~~~ivlPi~~~f~PdlVlvsaGfD 392 (586)
.|....+++.-+.. +..++||+|+|..|.+
T Consensus 49 ~G~t~~~~~~~l~~-----~~~~~pd~Vii~~G~N 78 (191)
T cd01836 49 TGATSADLLRQLAP-----LPETRFDVAVISIGVN 78 (191)
T ss_pred CCcCHHHHHHHHHh-----cccCCCCEEEEEeccc
Confidence 45556677765555 4578999999999984
No 22
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=38.97 E-value=30 Score=35.45 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=16.7
Q ss_pred HhhCCCCeEEEEecccccCccceecc
Q psy14515 159 LDNTSVSRVLIVDWDVHHGQATQQMF 184 (586)
Q Consensus 159 l~~~g~~RVlIVD~DVHHGNGTQ~iF 184 (586)
+.+.| +||++||.|.+..+ |.-++
T Consensus 25 La~~G-~rVllvD~Dpq~~~-~~~l~ 48 (273)
T PRK13232 25 LSTMG-NKILLVGCDPKADS-TRMLL 48 (273)
T ss_pred HHhhC-CCeEEEeccccccc-chhhc
Confidence 33444 79999999998765 44443
No 23
>PRK10818 cell division inhibitor MinD; Provisional
Probab=38.80 E-value=33 Score=34.79 Aligned_cols=19 Identities=11% Similarity=0.410 Sum_probs=14.9
Q ss_pred hCCCCeEEEEecccccCccc
Q psy14515 161 NTSVSRVLIVDWDVHHGQAT 180 (586)
Q Consensus 161 ~~g~~RVlIVD~DVHHGNGT 180 (586)
+.| +||++||+|.+.||-+
T Consensus 29 ~~g-~~vllvD~D~~~~~~~ 47 (270)
T PRK10818 29 QKG-KKTVVIDFDIGLRNLD 47 (270)
T ss_pred HCC-CeEEEEECCCCCCChh
Confidence 345 7999999999877643
No 24
>PF13472 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase family; PDB: 1ES9_A 1WAB_A 3DT9_A 1BWQ_A 1FXW_A 3DT6_A 1BWR_A 3DT8_A 1BWP_A 2WAA_A ....
Probab=37.85 E-value=53 Score=29.49 Aligned_cols=69 Identities=26% Similarity=0.494 Sum_probs=37.5
Q ss_pred CCCChHHHHHHHHHHHHHHHHhcCCCEEEEEcCCcCCCCCcCcccccCHHHHHH-HHHHHHHhc-CCcEEEEcC
Q psy14515 358 KGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAH-FTHWLKALA-QGRIILALE 429 (586)
Q Consensus 358 ~g~gd~~yl~a~~~ivlPi~~~f~PdlVlvsaGfDa~~~DplG~~~vt~~~y~~-~t~~L~~la-~grvv~vLE 429 (586)
.|..-.+++..+...+++ +...+||+|+|+.|..=.... .....+.+.|.. +..++..+. .++++++..
T Consensus 39 ~G~~~~~~~~~~~~~~~~-~~~~~~d~vvi~~G~ND~~~~--~~~~~~~~~~~~~l~~~i~~~~~~~~vi~~~~ 109 (179)
T PF13472_consen 39 SGATSSDFLARLQRDVLR-FKDPKPDLVVISFGTNDVLNG--DENDTSPEQYEQNLRRIIEQLRPHGPVILVSP 109 (179)
T ss_dssp TT-BHHHHHHHHHHHCHH-HCGTTCSEEEEE--HHHHCTC--TTCHHHHHHHHHHHHHHHHHHHTTSEEEEEE-
T ss_pred cCccHhHHHHHHHHHHhh-hccCCCCEEEEEccccccccc--ccccccHHHHHHHHHHHHHhhcccCcEEEecC
Confidence 455666777777777666 689999999999996433321 123334444433 333344332 346665553
No 25
>CHL00175 minD septum-site determining protein; Validated
Probab=36.64 E-value=38 Score=34.69 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=16.9
Q ss_pred HhhCCCCeEEEEecccccCccce
Q psy14515 159 LDNTSVSRVLIVDWDVHHGQATQ 181 (586)
Q Consensus 159 l~~~g~~RVlIVD~DVHHGNGTQ 181 (586)
+.+.| +||++||.|.++||-+.
T Consensus 40 La~~g-~~vlliD~D~~~~~l~~ 61 (281)
T CHL00175 40 IARLG-YRVALIDADIGLRNLDL 61 (281)
T ss_pred HHhCC-CeEEEEeCCCCCCChhh
Confidence 33445 79999999999888554
No 26
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=35.28 E-value=1.4e+02 Score=27.59 Aligned_cols=15 Identities=13% Similarity=0.532 Sum_probs=12.9
Q ss_pred hcCCCEEEEEcCCcC
Q psy14515 379 QFNPELVLVSAGYDA 393 (586)
Q Consensus 379 ~f~PdlVlvsaGfDa 393 (586)
.++||+|+|+.|..=
T Consensus 46 ~~~pd~vvl~~G~ND 60 (169)
T cd01828 46 ALQPKAIFIMIGIND 60 (169)
T ss_pred ccCCCEEEEEeeccC
Confidence 679999999999653
No 27
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=32.87 E-value=2.1e+02 Score=27.53 Aligned_cols=60 Identities=22% Similarity=0.398 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCEEEEEcCCcCCCCCcCcccccCHHHHHHHHHHHHHhc--CCcEEEEcCC
Q psy14515 362 DPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALA--QGRIILALEG 430 (586)
Q Consensus 362 d~~yl~a~~~ivlPi~~~f~PdlVlvsaGfDa~~~DplG~~~vt~~~y~~~t~~L~~la--~grvv~vLEG 430 (586)
..+.+.+|+.++ -.+.+.+||+||++ ||-......+...+..+...+..+. +.++++ +.|
T Consensus 23 ~~~~~~~~~~~~-~~~~~~~~d~i~~~-------GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~G 84 (223)
T cd00840 23 REDQFEAFEEIV-ELAIEEKVDFVLIA-------GDLFDSNNPSPEALELLIEALRRLKEAGIPVFI-IAG 84 (223)
T ss_pred hHHHHHHHHHHH-HHHHhcCCCEEEEC-------CcccCCCCCCHHHHHHHHHHHHHHHHCCCCEEE-ecC
Confidence 356778888764 56678899987763 3444433456677888888888884 445544 444
No 28
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=31.87 E-value=54 Score=30.45 Aligned_cols=18 Identities=17% Similarity=0.270 Sum_probs=13.9
Q ss_pred hCCCCeEEEEecccccCcc
Q psy14515 161 NTSVSRVLIVDWDVHHGQA 179 (586)
Q Consensus 161 ~~g~~RVlIVD~DVHHGNG 179 (586)
+.| .||++||.|...||-
T Consensus 26 ~~g-~~vllvD~D~~~~~~ 43 (179)
T cd02036 26 QLG-YKVVLIDADLGLRNL 43 (179)
T ss_pred hCC-CeEEEEeCCCCCCCc
Confidence 344 699999999987653
No 29
>KOG4013|consensus
Probab=31.67 E-value=57 Score=33.09 Aligned_cols=63 Identities=16% Similarity=0.327 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEcCCcCCCCCcCcccccCHHHHHHHHHHHHHhcCCcEEEEcCCCCCcchHHHHHH
Q psy14515 364 EYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYAMT 442 (586)
Q Consensus 364 ~yl~a~~~ivlPi~~~f~PdlVlvsaGfDa~~~DplG~~~vt~~~y~~~t~~L~~la~grvv~vLEGGYn~~~ia~~~~ 442 (586)
|+..+++..++-+..+- +++.|||..+-|-+ .+.+.|..+++|++++.=.+|-|.+++++-++
T Consensus 137 D~k~~lE~~l~~lGF~r-----vLtSG~~psAldGv-----------~~i~~lie~hkg~i~VmpG~Gi~~sNl~~ile 199 (255)
T KOG4013|consen 137 DWKTCLEDALLDLGFKR-----VLTSGQEPSALDGV-----------YIIRELIELHKGKIDVMPGCGINSSNLANILE 199 (255)
T ss_pred CHHHHHHHHHHHhhHHH-----HhhcCCCcccccch-----------HHHHHHHHHhcCCEEEecCCCcchHHHHHHHh
Confidence 34555555554443221 46889999888876 47788888999999999999999988876544
No 30
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=31.24 E-value=52 Score=33.78 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=17.0
Q ss_pred CCChHHHHHHHHHHHHHhhhc
Q psy14515 564 IQSQEFVRLCDERLDSLIASK 584 (586)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~ 584 (586)
+.+++-.++.-|++.++|+..
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~ 276 (279)
T PRK13230 256 PLEEEEIDQIGEKIKELIKKQ 276 (279)
T ss_pred CCCHHHHHHHHHHHHHHhhcc
Confidence 567788888999999998754
No 31
>PHA02518 ParA-like protein; Provisional
Probab=29.11 E-value=57 Score=31.36 Aligned_cols=20 Identities=40% Similarity=0.652 Sum_probs=13.5
Q ss_pred HhhCCCCeEEEEecccccCccc
Q psy14515 159 LDNTSVSRVLIVDWDVHHGQAT 180 (586)
Q Consensus 159 l~~~g~~RVlIVD~DVHHGNGT 180 (586)
+.+.| +||++||.|. +++-+
T Consensus 25 la~~g-~~vlliD~D~-q~~~~ 44 (211)
T PHA02518 25 LHADG-HKVLLVDLDP-QGSST 44 (211)
T ss_pred HHhCC-CeEEEEeCCC-CCChH
Confidence 33444 7999999996 44443
No 32
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=28.67 E-value=40 Score=31.90 Aligned_cols=15 Identities=27% Similarity=0.397 Sum_probs=12.9
Q ss_pred CeEEEEecccccCcc
Q psy14515 165 SRVLIVDWDVHHGQA 179 (586)
Q Consensus 165 ~RVlIVD~DVHHGNG 179 (586)
+||++||.|.+.+|-
T Consensus 25 ~~vlliD~D~~~~~~ 39 (179)
T cd03110 25 KNVVLADCDVDAPNL 39 (179)
T ss_pred hCcEEEECCCCCCch
Confidence 699999999998664
No 33
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=26.96 E-value=66 Score=33.66 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=15.7
Q ss_pred hCCCCeEEEEecccccCccceecc
Q psy14515 161 NTSVSRVLIVDWDVHHGQATQQMF 184 (586)
Q Consensus 161 ~~g~~RVlIVD~DVHHGNGTQ~iF 184 (586)
+.| +|||+||+|.++.+ |.-.|
T Consensus 30 ~~g-~kVLliD~D~q~~~-~~~~~ 51 (295)
T PRK13234 30 EMG-QKILIVGCDPKADS-TRLIL 51 (295)
T ss_pred HCC-CeEEEEeccccccc-ccccc
Confidence 344 69999999998655 44343
No 34
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=26.63 E-value=1.9e+02 Score=26.92 Aligned_cols=19 Identities=26% Similarity=0.441 Sum_probs=15.9
Q ss_pred HHHHhcCCCEEEEEcCCcC
Q psy14515 375 PIAYQFNPELVLVSAGYDA 393 (586)
Q Consensus 375 Pi~~~f~PdlVlvsaGfDa 393 (586)
+.+.+.+||+|+|..|..=
T Consensus 50 ~~l~~~~pd~Vii~~G~ND 68 (189)
T cd01825 50 AQLAALPPDLVILSYGTNE 68 (189)
T ss_pred HHHhhCCCCEEEEECCCcc
Confidence 4667899999999999654
No 35
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=26.48 E-value=71 Score=31.72 Aligned_cols=14 Identities=21% Similarity=0.458 Sum_probs=12.3
Q ss_pred CeEEEEecccccCc
Q psy14515 165 SRVLIVDWDVHHGQ 178 (586)
Q Consensus 165 ~RVlIVD~DVHHGN 178 (586)
+||++||.|...||
T Consensus 31 ~~vlliD~D~~~~~ 44 (261)
T TIGR01968 31 KKVVLIDADIGLRN 44 (261)
T ss_pred CeEEEEECCCCCCC
Confidence 69999999997766
No 36
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=26.46 E-value=2.6e+02 Score=25.84 Aligned_cols=56 Identities=18% Similarity=0.231 Sum_probs=29.7
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCCCEEEEEcCCcCCCCCcCcccccCHHHHHHHHHHHHHhc
Q psy14515 359 GMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALA 420 (586)
Q Consensus 359 g~gd~~yl~a~~~ivlPi~~~f~PdlVlvsaGfDa~~~DplG~~~vt~~~y~~~t~~L~~la 420 (586)
|..-.+++..+ .+-+..++||+|+|..|..=..... ...-..+.|..|...+++..
T Consensus 33 G~t~~~~~~~~----~~~~~~~~pd~v~i~~G~ND~~~~~--~~~~~~~~~~~l~~~~~~~~ 88 (174)
T cd01841 33 GISSRQYLEHI----EPQLIQKNPSKVFLFLGTNDIGKEV--SSNQFIKWYRDIIEQIREEF 88 (174)
T ss_pred cccHHHHHHHH----HHHHHhcCCCEEEEEeccccCCCCC--CHHHHHHHHHHHHHHHHHHC
Confidence 44444454444 3444578999999999985332211 11112334455555555543
No 37
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=26.00 E-value=78 Score=31.06 Aligned_cols=19 Identities=26% Similarity=0.422 Sum_probs=14.3
Q ss_pred CeEEEEecccccCccceecc
Q psy14515 165 SRVLIVDWDVHHGQATQQMF 184 (586)
Q Consensus 165 ~RVlIVD~DVHHGNGTQ~iF 184 (586)
+||++||.|.+ ||.|...+
T Consensus 29 ~rvLliD~D~q-~~~~~~~~ 47 (212)
T cd02117 29 KKVLQVGCDPK-ADSTRLLL 47 (212)
T ss_pred CcEEEEeCCCC-CCcccccc
Confidence 69999999965 66666544
No 38
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=25.67 E-value=82 Score=31.70 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=15.5
Q ss_pred hCCCCeEEEEecccccCccceec
Q psy14515 161 NTSVSRVLIVDWDVHHGQATQQM 183 (586)
Q Consensus 161 ~~g~~RVlIVD~DVHHGNGTQ~i 183 (586)
+.| +||++||.|- +||-|...
T Consensus 27 ~~G-~kVlliD~Dp-q~n~~~~~ 47 (270)
T cd02040 27 EMG-KKVMIVGCDP-KADSTRLL 47 (270)
T ss_pred hCC-CeEEEEEcCC-CCCchhhh
Confidence 344 6999999999 47766544
No 39
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=24.84 E-value=75 Score=33.43 Aligned_cols=14 Identities=36% Similarity=0.501 Sum_probs=11.9
Q ss_pred CeEEEEecccccCc
Q psy14515 165 SRVLIVDWDVHHGQ 178 (586)
Q Consensus 165 ~RVlIVD~DVHHGN 178 (586)
+||++||+|..+++
T Consensus 29 ~rVLlID~Dpq~~~ 42 (296)
T TIGR02016 29 KRVLQLGCDPKHDS 42 (296)
T ss_pred CeEEEEEecCCCCc
Confidence 69999999998643
No 40
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=23.79 E-value=2.7e+02 Score=25.58 Aligned_cols=26 Identities=23% Similarity=0.393 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEcCCc
Q psy14515 363 PEYIAAFQQVILPIAYQFNPELVLVSAGYD 392 (586)
Q Consensus 363 ~~yl~a~~~ivlPi~~~f~PdlVlvsaGfD 392 (586)
.+.+..+.. .+..++||+|+|..|.+
T Consensus 50 ~~~~~~l~~----~~~~~~pd~v~i~~G~N 75 (177)
T cd01822 50 AGGLARLPA----LLAQHKPDLVILELGGN 75 (177)
T ss_pred HHHHHHHHH----HHHhcCCCEEEEeccCc
Confidence 344444444 33458999999999975
No 41
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=22.94 E-value=3.5e+02 Score=22.85 Aligned_cols=49 Identities=14% Similarity=0.244 Sum_probs=33.2
Q ss_pred HHHHHHHHHhcCCCEEEEEcCCcCCCCCcCcccccCHHHHHHHHHHHHHhcCCcEEEE
Q psy14515 370 QQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALAQGRIILA 427 (586)
Q Consensus 370 ~~ivlPi~~~f~PdlVlvsaGfDa~~~DplG~~~vt~~~y~~~t~~L~~la~grvv~v 427 (586)
...|+-.+.+.++|+|++.+=--....+-+ ++..+..|..-+..+|+++
T Consensus 91 ~~~i~~~~~~~~~dliv~G~~~~~~~~~~~---------~gs~~~~l~~~~~~pVlvv 139 (140)
T PF00582_consen 91 ADAIIEFAEEHNADLIVMGSRGRSGLERLL---------FGSVAEKLLRHAPCPVLVV 139 (140)
T ss_dssp HHHHHHHHHHTTCSEEEEESSSTTSTTTSS---------SHHHHHHHHHHTSSEEEEE
T ss_pred chhhhhccccccceeEEEeccCCCCccCCC---------cCCHHHHHHHcCCCCEEEe
Confidence 345677889999999999874322222222 5667777777777777664
No 42
>KOG3035|consensus
Probab=22.89 E-value=1.2e+02 Score=31.34 Aligned_cols=155 Identities=15% Similarity=0.199 Sum_probs=83.0
Q ss_pred cCCCEEEEEcCCcCCCCCcCcccccCHHHHHH-HHHHHHHhcCCcEEEEcCCCCCcchHHHHHHHHHHHHc-CCCCCCCc
Q psy14515 380 FNPELVLVSAGYDACVNDPLGGCKVSPEAYAH-FTHWLKALAQGRIILALEGGYNISSISYAMTLCTKALL-GDPLPLLE 457 (586)
Q Consensus 380 f~PdlVlvsaGfDa~~~DplG~~~vt~~~y~~-~t~~L~~la~grvv~vLEGGYn~~~ia~~~~~~~~~Ll-g~~~p~~~ 457 (586)
..|.+||+ ||.+-.+..++.||+. +......-| .|++=.=+|||-. .+...+-+.+. |+..++
T Consensus 5 ~rp~i~LF--------GdSItq~sF~~gGwGA~Lad~y~Rka--Dv~~RGysGynSR---wALkvL~~ifp~~~s~~p-- 69 (245)
T KOG3035|consen 5 MRPRIVLF--------GDSITQFSFTDGGWGAALADLYSRKA--DVLLRGYSGYNSR---WALKVLPEIFPKGSSIQP-- 69 (245)
T ss_pred ccccEEEe--------cchhhhhcccCCchhHHHHHHHHHhh--hhhhcccccchhH---HHHHHhhhhccccccCCc--
Confidence 45777775 7889899999998864 334444433 4666667788763 22222222221 222211
Q ss_pred ccccccccccchhhhhhhhhcCCccccccccCCCCccccccchhhhhHHHHHHHHHHHhcCccccccccccccccCCCCC
Q psy14515 458 SDLDINSSAVTSIKVIIIINNNNSVYLYCSHRTENPFAFLSFLSLKNITETILNCIYEHRPYWNCYKFQDISTEGAHSSP 537 (586)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~W~~l~~~~~~~~~~~~~~ 537 (586)
.-|+||.--|++. +......-+.+|.++ -++.|+++.+..+.+|.-.+.- .-.|
T Consensus 70 ------------~lvtVffGaNDs~-l~~~~~~~~hvPl~E------y~dNlr~iv~~lks~~~~~riI-------litP 123 (245)
T KOG3035|consen 70 ------------VLVTVFFGANDSC-LPEPSSLGQHVPLEE------YKDNLRKIVSHLKSLSPETRII-------LITP 123 (245)
T ss_pred ------------eEEEEEecCcccc-CCCCCCCCCccCHHH------HHHHHHHHHHHhhccCCcceEE-------EecC
Confidence 1245666555542 211100001244455 7888888888888888544421 1222
Q ss_pred Ccccc-ccccccCCCc-ccceeecccccCCChHHHHHHHH
Q psy14515 538 LHIPR-AEFKYEGNPK-QEIYATRDCYPIQSQEFVRLCDE 575 (586)
Q Consensus 538 ~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 575 (586)
-.+-+ +.++|+..+- -...+|-+..-+.++..+.+|.|
T Consensus 124 pp~de~~~~~~~~e~~~~~~~RtNe~~~~Ya~ac~~la~e 163 (245)
T KOG3035|consen 124 PPVDEEAWEKQEQEPYVLGPERTNETVGTYAKACANLAQE 163 (245)
T ss_pred CCcCHHHHHHHhccchhccchhhhhHHHHHHHHHHHHHHH
Confidence 22333 3456664443 34456666666677777777765
No 43
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=22.56 E-value=90 Score=31.67 Aligned_cols=17 Identities=29% Similarity=0.325 Sum_probs=13.4
Q ss_pred CeEEEEecccccCcccee
Q psy14515 165 SRVLIVDWDVHHGQATQQ 182 (586)
Q Consensus 165 ~RVlIVD~DVHHGNGTQ~ 182 (586)
+|||+||.|- +||-|+-
T Consensus 29 ~rVLliD~D~-q~~~~~~ 45 (268)
T TIGR01281 29 KRVLQIGCDP-KHDSTFT 45 (268)
T ss_pred CeEEEEecCc-cccccce
Confidence 6999999997 4666653
No 44
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=22.54 E-value=86 Score=31.85 Aligned_cols=20 Identities=20% Similarity=0.242 Sum_probs=14.4
Q ss_pred hCCCCeEEEEecccccCcccee
Q psy14515 161 NTSVSRVLIVDWDVHHGQATQQ 182 (586)
Q Consensus 161 ~~g~~RVlIVD~DVHHGNGTQ~ 182 (586)
+.| +|||+||.|- +||=|+.
T Consensus 28 ~~G-~kVLliD~Dp-q~~~t~~ 47 (270)
T PRK13185 28 KLG-KKVLQIGCDP-KHDSTFT 47 (270)
T ss_pred HCC-CeEEEEeccC-Ccchhhh
Confidence 344 6999999997 4666643
No 45
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=22.46 E-value=1.7e+02 Score=25.58 Aligned_cols=54 Identities=11% Similarity=0.100 Sum_probs=29.6
Q ss_pred HHHHHHHhcCCCEEEEEcCCcCCCCCcCcccccCHHHHHHHHHHHHHhcCCcEEEEcCCCCCcchHH
Q psy14515 372 VILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSIS 438 (586)
Q Consensus 372 ivlPi~~~f~PdlVlvsaGfDa~~~DplG~~~vt~~~y~~~t~~L~~la~grvv~vLEGGYn~~~ia 438 (586)
-+.-.+.+++||+|.+|+-+. -+-.....+.+.++... .++.+++.| ...+...
T Consensus 42 ~l~~~~~~~~pd~V~iS~~~~-----------~~~~~~~~l~~~~k~~~-p~~~iv~GG-~~~t~~~ 95 (121)
T PF02310_consen 42 ELVEALRAERPDVVGISVSMT-----------PNLPEAKRLARAIKERN-PNIPIVVGG-PHATADP 95 (121)
T ss_dssp HHHHHHHHTTCSEEEEEESSS-----------THHHHHHHHHHHHHTTC-TTSEEEEEE-SSSGHHH
T ss_pred HHHHHHhcCCCcEEEEEccCc-----------CcHHHHHHHHHHHHhcC-CCCEEEEEC-CchhcCh
Confidence 345567889999999998421 12223445555555543 234554444 4444333
No 46
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=21.99 E-value=1.9e+02 Score=26.36 Aligned_cols=31 Identities=23% Similarity=0.284 Sum_probs=20.6
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCCCEEEEEcCCcC
Q psy14515 359 GMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDA 393 (586)
Q Consensus 359 g~gd~~yl~a~~~ivlPi~~~f~PdlVlvsaGfDa 393 (586)
|-.-.+....+.. .+.+++||+|+|..|.+=
T Consensus 22 G~~~~~~~~~~~~----~~~~~~pd~vvi~~G~ND 52 (157)
T cd01833 22 GYLIDQIAAAAAD----WVLAAKPDVVLLHLGTND 52 (157)
T ss_pred CccHHHHHHHhhh----ccccCCCCEEEEeccCcc
Confidence 3334455555543 445689999999999863
No 47
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=21.43 E-value=91 Score=31.80 Aligned_cols=14 Identities=21% Similarity=0.294 Sum_probs=11.9
Q ss_pred CeEEEEecccccCc
Q psy14515 165 SRVLIVDWDVHHGQ 178 (586)
Q Consensus 165 ~RVlIVD~DVHHGN 178 (586)
+|||+||+|.++.+
T Consensus 32 ~rvLliD~Dpq~~~ 45 (275)
T PRK13233 32 KKVFIHGCDPKADS 45 (275)
T ss_pred CeEEEeccCcCcCh
Confidence 69999999998644
No 48
>PF02701 zf-Dof: Dof domain, zinc finger; InterPro: IPR003851 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry consists of proteins containing a Dof domain, which is a zinc finger DNA-binding domain that shows resemblance to the Cys2 zinc finger, although it has a longer putative loop where an extra Cys residue is conserved []. AOBP, a DNA-binding protein in pumpkin (Cucurbita maxima), contains a 52 amino acid Dof domain, which is highly conserved in several DNA-binding proteins of higher plants. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent
Probab=21.39 E-value=30 Score=28.71 Aligned_cols=9 Identities=33% Similarity=1.172 Sum_probs=7.2
Q ss_pred CCccccchH
Q psy14515 143 CGYCFFNNV 151 (586)
Q Consensus 143 ~GFC~fNNv 151 (586)
-=||||||-
T Consensus 16 TKFcYyNNy 24 (63)
T PF02701_consen 16 TKFCYYNNY 24 (63)
T ss_pred CEEEeecCC
Confidence 459999985
No 49
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=20.11 E-value=1e+02 Score=30.39 Aligned_cols=14 Identities=29% Similarity=0.316 Sum_probs=11.1
Q ss_pred hCCCCeEEEEecccc
Q psy14515 161 NTSVSRVLIVDWDVH 175 (586)
Q Consensus 161 ~~g~~RVlIVD~DVH 175 (586)
+.| +||++||.|..
T Consensus 28 ~~g-~~VlliD~D~q 41 (246)
T TIGR03371 28 LLG-EPVLAIDLDPQ 41 (246)
T ss_pred hCC-CcEEEEeCCCc
Confidence 344 69999999983
Done!