Query psy14515
Match_columns 586
No_of_seqs 297 out of 1631
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 21:53:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14515.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14515hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pqp_A HD7A, histone deacetyla 100.0 3.3E-89 1.1E-93 729.4 31.8 336 2-526 64-419 (421)
2 2vqm_A HD4, histone deacetylas 100.0 9.6E-87 3.3E-91 714.1 28.1 344 2-526 36-390 (413)
3 1zz1_A Histone deacetylase-lik 100.0 1.3E-81 4.5E-86 665.6 29.3 289 1-453 40-333 (369)
4 4a69_A Histone deacetylase 3,; 100.0 4.5E-77 1.6E-81 631.2 32.8 292 1-455 26-321 (376)
5 1c3p_A Protein (HDLP (histone 100.0 2.8E-77 9.5E-82 633.7 30.1 291 1-455 25-320 (375)
6 3max_A HD2, histone deacetylas 100.0 1.8E-76 6E-81 624.3 32.1 291 1-455 26-320 (367)
7 3ew8_A HD8, histone deacetylas 100.0 1.2E-76 4E-81 628.7 30.5 291 2-455 36-329 (388)
8 3q9b_A Acetylpolyamine amidohy 100.0 6.1E-77 2.1E-81 622.5 27.5 285 2-450 31-341 (341)
9 3men_A Acetylpolyamine aminohy 100.0 2.5E-76 8.6E-81 621.3 29.4 302 2-450 52-359 (362)
10 2pqp_A HD7A, histone deacetyla 97.6 3.7E-05 1.2E-09 82.6 5.1 65 216-281 270-386 (421)
11 2vqm_A HD4, histone deacetylas 96.9 0.00071 2.4E-08 72.7 5.5 63 216-279 241-355 (413)
12 1c3p_A Protein (HDLP (histone 95.5 0.0088 3E-07 63.4 4.3 28 252-279 293-320 (375)
13 3ew8_A HD8, histone deacetylas 95.3 0.062 2.1E-06 57.2 10.0 28 252-279 302-329 (388)
14 4a69_A Histone deacetylase 3,; 94.5 0.11 3.9E-06 55.0 9.6 28 252-279 294-321 (376)
15 1zz1_A Histone deacetylase-lik 94.1 0.033 1.1E-06 58.9 4.2 26 252-277 308-333 (369)
16 3max_A HD2, histone deacetylas 93.3 0.25 8.5E-06 52.3 9.3 28 252-279 293-320 (367)
17 3q9b_A Acetylpolyamine amidohy 92.0 0.096 3.3E-06 54.9 3.9 23 252-274 319-341 (341)
18 3men_A Acetylpolyamine aminohy 91.4 0.1 3.4E-06 55.1 3.4 23 252-274 337-359 (362)
19 4hf7_A Putative acylhydrolase; 49.4 18 0.00062 33.4 5.0 33 359-395 60-93 (209)
20 1yzf_A Lipase/acylhydrolase; s 42.3 74 0.0025 27.8 7.7 61 359-427 49-110 (195)
21 2vpt_A Lipolytic enzyme; ester 41.1 42 0.0014 30.8 6.1 60 359-426 65-124 (215)
22 3kjh_A CO dehydrogenase/acetyl 35.7 25 0.00086 32.7 3.6 20 159-180 24-43 (254)
23 1g3q_A MIND ATPase, cell divis 33.9 30 0.001 32.2 3.8 16 165-180 32-47 (237)
24 3p94_A GDSL-like lipase; serin 33.7 39 0.0013 30.2 4.4 30 359-392 56-85 (204)
25 3ea0_A ATPase, para family; al 33.1 38 0.0013 31.6 4.4 18 165-182 35-52 (245)
26 3hp4_A GDSL-esterase; psychrot 33.1 58 0.002 28.7 5.4 31 358-392 47-77 (185)
27 1hyq_A MIND, cell division inh 32.3 33 0.0011 32.7 3.9 16 165-180 32-47 (263)
28 3q9l_A Septum site-determining 32.2 33 0.0011 32.4 3.8 17 165-181 32-48 (260)
29 1cp2_A CP2, nitrogenase iron p 31.8 31 0.0011 32.9 3.6 23 161-185 27-49 (269)
30 4h08_A Putative hydrolase; GDS 28.0 1.3E+02 0.0043 27.0 6.9 51 359-421 56-110 (200)
31 3dff_A Teicoplanin pseudoaglyc 27.5 62 0.0021 32.1 5.0 34 363-396 130-163 (273)
32 3pg5_A Uncharacterized protein 27.4 32 0.0011 35.2 3.0 20 165-185 31-50 (361)
33 3dci_A Arylesterase; SGNH_hydr 27.0 90 0.0031 28.9 5.9 41 375-419 94-139 (232)
34 3dfi_A Pseudoaglycone deacetyl 26.7 68 0.0023 31.7 5.2 36 362-397 126-161 (270)
35 2xj4_A MIPZ; replication, cell 25.3 45 0.0015 32.6 3.5 17 165-181 34-50 (286)
36 1ii7_A MRE11 nuclease; RAD50, 24.3 2.5E+02 0.0087 27.8 9.0 60 363-431 23-84 (333)
37 1ivn_A Thioesterase I; hydrola 23.8 2.2E+02 0.0075 25.0 7.7 30 359-392 44-73 (190)
38 3la6_A Tyrosine-protein kinase 23.0 57 0.002 32.4 3.8 14 165-178 122-135 (286)
39 3bzw_A Putative lipase; protei 22.9 1.5E+02 0.005 28.4 6.6 41 359-401 68-109 (274)
40 2q0q_A ARYL esterase; SGNH hyd 22.0 1.9E+02 0.0064 25.9 6.9 41 375-419 76-121 (216)
41 3rjt_A Lipolytic protein G-D-S 21.6 31 0.0011 30.9 1.4 29 359-391 65-93 (216)
42 1wcv_1 SOJ, segregation protei 21.0 62 0.0021 30.9 3.5 15 165-180 36-50 (257)
43 3bfv_A CAPA1, CAPB2, membrane 20.4 72 0.0025 31.3 3.8 14 165-178 112-125 (271)
44 1vjg_A Putative lipase from th 20.2 1.6E+02 0.0055 26.6 6.0 67 359-428 66-136 (218)
No 1
>2pqp_A HD7A, histone deacetylase 7A; HDAC, structural genomics, structural genomics consortium, SGC; HET: TSN; 1.80A {Homo sapiens} PDB: 2pqo_A* 2nvr_A 3c0y_A 3c0z_A 3c10_A* 2vqm_A* 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A*
Probab=100.00 E-value=3.3e-89 Score=729.35 Aligned_cols=336 Identities=38% Similarity=0.654 Sum_probs=289.5
Q ss_pred chHHHHHHHHHHcCCCCCceEeCCCCCCHHHHHccCChHHHHHHhhhcC---CCchHHHhh-h-------------hcCC
Q psy14515 2 LKHVNIKDPCKELGLVQRCKFIQPREATQEEILKKHTIEQIELLATTEG---STDVDALEQ-L-------------SSHY 64 (586)
Q Consensus 2 ~K~~~I~~~L~~~GL~~~~~~i~pr~At~eeLl~vHs~eYV~~L~~~~~---~~~~~~~~~-l-------------~~~~ 64 (586)
+|+++|+++|++.||+++|++++|++||++||++||+++||+.+..... ..+.+.+.. . ..+.
T Consensus 64 ~Rl~~i~~~L~~~Gl~~~~~~~~p~~At~eeL~~vHs~~YI~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~p~gg~~~D~ 143 (421)
T 2pqp_A 64 GRIQSIWSRLQERGLRSQCECLRGRKASLEELQSVHSERHVLLYGTNPLSRLKLDNGKLAGLLAQRMFVMLPCGGVGVDT 143 (421)
T ss_dssp HHHHHHHHHHHHTTCGGGSEEECCCCCCHHHHTTTSCHHHHHHHHCCTTCSCCCCHHHHHHHHSCCCCEECTTSCEESSS
T ss_pred HHHHHHHHHHHhcCCcccCeeeCCCCCCHHHHHhcCCHHHHHhhhcchhhhhhhhcccccccchhhhhhhccccCcCCCC
Confidence 5999999999999999999999999999999999999999986543211 011110100 0 0011
Q ss_pred CccccC-CChhhhhhhhcCchhHHhhhcccCCCCCchhhhHHHhhccHHHHHHHHhccCcccceEeecCCCCCCCccccC
Q psy14515 65 DAIYIH-PSSYKLSLLSAGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNGMAVIRPPGHHAMKSEYC 143 (586)
Q Consensus 65 d~~~~~-~~t~~~a~l~~g~~~~~~~~~~~~~~~~~~~~aa~~AaG~ti~aa~~V~~g~~~ngfAivRPPGHHA~~~~a~ 143 (586)
| ++++ +.+++ ++++++|++++|+++|++|+++|+||++|||||||++++++
T Consensus 144 D-t~~~~~~s~~---------------------------aa~~aaG~~~~a~~~v~~g~~~~afa~~rPpGHHA~~~~a~ 195 (421)
T 2pqp_A 144 D-TIWNELHSSN---------------------------AARWAAGSVTDLAFKVASRELKNGFAVVRPPGHHADHSTAM 195 (421)
T ss_dssp S-CEECTTTHHH---------------------------HHHHHHHHHHHHHHHHHTTSSSEEEECCSSCCTTCBTTBCB
T ss_pred C-cccCCccHHH---------------------------HHHHHHhHHHHHHHHHHcCccccceeeCCCCCCCCCCCCCC
Confidence 2 2222 34444 45559999999999999999999999999999999999999
Q ss_pred CccccchHHHHHHHHHhhCCCCeEEEEecccccCccceeccccCCceEEEeeccccCCCCCCCCCCCCCccccccCCccc
Q psy14515 144 GYCFFNNVALAAQHALDNTSVSRVLIVDWDVHHGQATQQMFYNDNRVVYFSIHRYEHGTFWPNLRESEYDHIGEGIGKGY 223 (586)
Q Consensus 144 GFC~fNNvAIAAk~al~~~g~~RVlIVD~DVHHGNGTQ~iFy~dp~VlyiSiHry~~g~fyP~~~~~~~~~~G~g~G~G~ 223 (586)
|||+||||||||++|+++++++||+|||||||||||||+|||+||+|||+|+|+|++|+|||+++ ..+++|.|.|+||
T Consensus 196 GFC~fNnvAiAa~~l~~~~~~~RV~ivD~DvHHGnGtq~iF~~dp~Vl~~S~H~~~~g~~yPgtG--~~~e~G~g~g~g~ 273 (421)
T 2pqp_A 196 GFCFFNSVAIACRQLQQQSKASKILIVDWDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFPGSG--AVDEVGAGSGEGF 273 (421)
T ss_dssp TTBSSCHHHHHHHHHHHHSTTCCEEEEECSSSCCHHHHHHHTTCTTEEEEEEEECGGGTSTTCCC--CTTCCCCGGGTTC
T ss_pred cchhhCHHHHHHHHHHHhcCCCeEEEEecCCCCChhHHHHhcCCCCEEEEecccCCCCCCCCCCC--ChhhccCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999889999975 6789999999999
Q ss_pred eeeecCCCCCCCchHHHHHHHHhhhhhhhcCCccccchhhhHHHHHHhhhCCCCCCCCCCCCCCCCCccccccchhHhHh
Q psy14515 224 NFNIPLNKTHMKDADYMAVFHQVLLPMVAEGGYCLKSLAEGAALTLRALLDDPCPNFETLGTPSERPKIWKEGKQCLVLA 303 (586)
Q Consensus 224 nvNVPl~~~g~~D~DYlaif~~vl~p~aleggy~~~sl~~~~~~t~~~llGdp~p~~~~~~~p~~~p~~w~~~r~~~~~~ 303 (586)
|+||||+. |+
T Consensus 274 ~vNvPl~~-gl--------------------------------------------------------------------- 283 (421)
T 2pqp_A 274 NVNVAWAG-GL--------------------------------------------------------------------- 283 (421)
T ss_dssp EEEEEECS-CS---------------------------------------------------------------------
T ss_pred eeccccCC-CC---------------------------------------------------------------------
Confidence 99999972 11
Q ss_pred hhccCccchhhhhhhhhhhhhhhhhhccCCCCCCCCccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCC
Q psy14515 304 LKHIVPQNSILSNLDRASRRFKLLTFVHLPAENTDVPLLFLLQIPGCYPHRTKSKGMSDPEYIAAFQQVILPIAYQFNPE 383 (586)
Q Consensus 304 ~~h~~~~~~i~~~~~~~~~r~a~~~~~hs~~~~~d~~~~f~~~i~~~~p~~~~~~g~gd~~yl~a~~~ivlPi~~~f~Pd 383 (586)
.+|++|.+|+.+|+.+|+|++++|+||
T Consensus 284 -----------------------------------------------------~~g~~d~~yl~~~~~~l~p~~~~F~Pd 310 (421)
T 2pqp_A 284 -----------------------------------------------------DPPMGDPEYLAAFRIVVMPIAREFSPD 310 (421)
T ss_dssp -----------------------------------------------------SSCCBHHHHHHHHHHTHHHHHHHHCCS
T ss_pred -----------------------------------------------------CCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 147999999999999999999999999
Q ss_pred EEEEEcCCcCCCCC--cCcccccCHHHHHHHHHHHHHhcCCcEEEEcCCCCCcchHHHHHHHHHHHHcCCCCCCCccccc
Q psy14515 384 LVLVSAGYDACVND--PLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYAMTLCTKALLGDPLPLLESDLD 461 (586)
Q Consensus 384 lVlvsaGfDa~~~D--plG~~~vt~~~y~~~t~~L~~la~grvv~vLEGGYn~~~ia~~~~~~~~~Llg~~~p~~~~~~~ 461 (586)
+||||||||++.+| |||+|+||+++|++||++|+.+|+||+|++||||||++++++++.+|+++|+|++++++..+.
T Consensus 311 lIvvsaG~Da~~gD~dpLg~~~lt~~~y~~~~~~l~~~a~grvv~vlEGGY~l~~l~~~~~a~~~~L~g~~~~~l~~~~- 389 (421)
T 2pqp_A 311 LVLVSAGFDAAEGHPAPLGGYHVSAKCFGYMTQQLMNLAGGAVVLALEGGHDLTAICDASEACVAALLGNRVDPLSEEG- 389 (421)
T ss_dssp EEEEEECCTTBTTCCGGGCCCBBCHHHHHHHHHHHTTSGGGCEEEEECSCCCHHHHHHHHHHHHHHHTTCCCCGGGCGG-
T ss_pred EEEEeCCcccccccccccCCceeCHHHHHHHHHHHHHHcCCCEEEEECCCCChHHHHHHHHHHHHHHcCCCCCCCcccc-
Confidence 99999999999997 999999999999999999999999999999999999999999999999999999887764111
Q ss_pred ccccccchhhhhhhhhcCCccccccccCCCCccccccchhhhhHHHHHHHHHHHhcCcccccccc
Q psy14515 462 INSSAVTSIKVIIIINNNNSVYLYCSHRTENPFAFLSFLSLKNITETILNCIYEHRPYWNCYKFQ 526 (586)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~W~~l~~~ 526 (586)
... .++.+++++|++|+++|++||+||+..
T Consensus 390 -----------------------------~~~------~p~~~a~~~i~~v~~~~~~yW~~l~~~ 419 (421)
T 2pqp_A 390 -----------------------------WKQ------KPNLNAIRSLEAVIRVHSKYWGCMQRL 419 (421)
T ss_dssp -----------------------------GGS------CCCHHHHHHHHHHHHHHTTTCGGGCC-
T ss_pred -----------------------------ccc------ccCHHHHHHHHHHHHHHHHHhHHHHhh
Confidence 111 123449999999999999999999853
No 2
>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A*
Probab=100.00 E-value=9.6e-87 Score=714.11 Aligned_cols=344 Identities=39% Similarity=0.675 Sum_probs=292.1
Q ss_pred chHHHHHHHHHHcCCCCCceEeCCCCCCHHHHHccCChHHHHHHhhhcCCCc-hH---HHhhhhcCC-----CccccCCC
Q psy14515 2 LKHVNIKDPCKELGLVQRCKFIQPREATQEEILKKHTIEQIELLATTEGSTD-VD---ALEQLSSHY-----DAIYIHPS 72 (586)
Q Consensus 2 ~K~~~I~~~L~~~GL~~~~~~i~pr~At~eeLl~vHs~eYV~~L~~~~~~~~-~~---~~~~l~~~~-----d~~~~~~~ 72 (586)
+|+++|+++|++.||+++|++++|++||.+||++||+++||+.++....... .+ ....+...+ ....+..+
T Consensus 36 ~Rl~~i~~~L~~~gl~~~~~~~~p~~At~eeL~~vHs~~Yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~d 115 (413)
T 2vqm_A 36 GRIQSIWSRLQETGLRGKCECIRGRKATLEELQTVHSEAHTLLYGTNPLNRQKLDSKKLLGSLASVFVRLPCGGVGVDSD 115 (413)
T ss_dssp CHHHHHHHHHHHHTHHHHSEEECCCCCCHHHHTTTSCHHHHHHHHSCGGGGCC----HHHHHHHHHEEECTTSCEEECTT
T ss_pred HHHHHHHHHHHhCCCCcCCeEeCCCCCCHHHHHHhCCHHHHHHHhcCchhhhHhhhhhhccchhhhhhccccCCcCccCC
Confidence 5999999999999999999999999999999999999999998876432111 00 000110000 00001111
Q ss_pred hhhhhhhhcCchhHHhhhcccCCCCCchhhhHHHhhccHHHHHHHHhccCcccceEeecCCCCCCCccccCCccccchHH
Q psy14515 73 SYKLSLLSAGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNGMAVIRPPGHHAMKSEYCGYCFFNNVA 152 (586)
Q Consensus 73 t~~~a~l~~g~~~~~~~~~~~~~~~~~~~~aa~~AaG~ti~aa~~V~~g~~~ngfAivRPPGHHA~~~~a~GFC~fNNvA 152 (586)
+.-. ...+|.++++|+|++++|+++|++|+++|+||++|||||||++++++|||||||+|
T Consensus 116 t~~~--------------------~~~s~~aA~laaG~~l~a~~~v~~g~~~~afa~vrppGHHA~~~~a~GFC~~Nnva 175 (413)
T 2vqm_A 116 TIWN--------------------EVHSAGAARLAVGCVVELVFKVATGELKNGFAVVRPPGHHAEESTPMGFCYFNSVA 175 (413)
T ss_dssp STHH--------------------HHHHHHHHHHHHHHHHHHHHHHHTTSSSEEEECCCSCCTTCBTTBCBTTBSSCHHH
T ss_pred cccc--------------------chhHHHHHHHHHHHHHHHHHHHhcCCccceeeecccccccCcCCCCCCccccchHH
Confidence 1000 01356667779999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCeEEEEecccccCccceeccccCCceEEEeeccccCCCCCCCCCCCCCccccccCCccceeeecCCCC
Q psy14515 153 LAAQHALDNTSVSRVLIVDWDVHHGQATQQMFYNDNRVVYFSIHRYEHGTFWPNLRESEYDHIGEGIGKGYNFNIPLNKT 232 (586)
Q Consensus 153 IAAk~al~~~g~~RVlIVD~DVHHGNGTQ~iFy~dp~VlyiSiHry~~g~fyP~~~~~~~~~~G~g~G~G~nvNVPl~~~ 232 (586)
|||++|+++++++||||||||||||||||+|||+||+|||+|+|+|+++.|||+++ +.+++|.|.|+|||+||||+.
T Consensus 176 iaa~~~~~~~~~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~f~pgtG--~~~e~G~g~g~g~~~n~pl~~- 252 (413)
T 2vqm_A 176 VAAKLLQQRLSVSKILIVDWDVHHGNGTQQAFYSDPSVLYMSLHRYDDGNFFPGSG--APDEVGTGPGVGFNVNMAFTG- 252 (413)
T ss_dssp HHHHHHHHHSCCSCEEEEECSSSCCHHHHHHHTTCTTEEEEEEEECGGGCSTTCCC--CTTCCCSGGGTTCEEEEEECS-
T ss_pred HHHHHHHHhcCCCeEEEEecccCCCccHHHHHhcCcccccccchhccCCCCCCCCC--CHHHcCCCccccccccccccc-
Confidence 99999999999999999999999999999999999999999999999999999975 678999999999999999972
Q ss_pred CCCchHHHHHHHHhhhhhhhcCCccccchhhhHHHHHHhhhCCCCCCCCCCCCCCCCCccccccchhHhHhhhccCccch
Q psy14515 233 HMKDADYMAVFHQVLLPMVAEGGYCLKSLAEGAALTLRALLDDPCPNFETLGTPSERPKIWKEGKQCLVLALKHIVPQNS 312 (586)
Q Consensus 233 g~~D~DYlaif~~vl~p~aleggy~~~sl~~~~~~t~~~llGdp~p~~~~~~~p~~~p~~w~~~r~~~~~~~~h~~~~~~ 312 (586)
|+
T Consensus 253 g~------------------------------------------------------------------------------ 254 (413)
T 2vqm_A 253 GL------------------------------------------------------------------------------ 254 (413)
T ss_dssp CS------------------------------------------------------------------------------
T ss_pred cc------------------------------------------------------------------------------
Confidence 11
Q ss_pred hhhhhhhhhhhhhhhhhccCCCCCCCCccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEEcCCc
Q psy14515 313 ILSNLDRASRRFKLLTFVHLPAENTDVPLLFLLQIPGCYPHRTKSKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYD 392 (586)
Q Consensus 313 i~~~~~~~~~r~a~~~~~hs~~~~~d~~~~f~~~i~~~~p~~~~~~g~gd~~yl~a~~~ivlPi~~~f~PdlVlvsaGfD 392 (586)
.++++|.+|+.+|+.+|+|++++|+||+||||||||
T Consensus 255 --------------------------------------------~~~~~D~~y~~~~~~~v~p~~~~f~PdlivvsaG~D 290 (413)
T 2vqm_A 255 --------------------------------------------DPPMGDAEYLAAFRTVVMPIASEFAPDVVLVSSGFD 290 (413)
T ss_dssp --------------------------------------------SSCCCHHHHHHHHHHTHHHHHHHHCCSEEEEEECCT
T ss_pred --------------------------------------------CCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeCChh
Confidence 247999999999999999999999999999999999
Q ss_pred CCCC--CcCcccccCHHHHHHHHHHHHHhcCCcEEEEcCCCCCcchHHHHHHHHHHHHcCCCCCCCcccccccccccchh
Q psy14515 393 ACVN--DPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYAMTLCTKALLGDPLPLLESDLDINSSAVTSI 470 (586)
Q Consensus 393 a~~~--DplG~~~vt~~~y~~~t~~L~~la~grvv~vLEGGYn~~~ia~~~~~~~~~Llg~~~p~~~~~~~~~~~~~~~~ 470 (586)
++.+ ||||+++||+++|++|+++|+++|+||+|++||||||++++++|+.+++++|+|.+++++....
T Consensus 291 a~~~d~D~lg~~~lt~~~~~~~~~~l~~~a~~~~v~vleGGY~~~~l~~~~~~~~~~l~g~~~~~~p~~~---------- 360 (413)
T 2vqm_A 291 AVEGHPTPLGGYNLSARCFGYLTKQLMGLAGGRIVLALEGGHDLTAICDASEACVSALLGNELDPLPEKV---------- 360 (413)
T ss_dssp TBSSCTTTTCCCCBCHHHHHHHHHHHHTSGGGCEEEEECCCCCHHHHHHHHHHHHHHHTTCCCCCCCHHH----------
T ss_pred hcCCCCCCCCCcccCHHHHHHHHHHHHHhcCCCEEEEeCcCCChHHHHHHHHHHHHHHcCCCCCCCChhh----------
Confidence 9999 5699999999999999999999999999999999999999999999999999999877764111
Q ss_pred hhhhhhhcCCccccccccCCCCccccccchhhhhHHHHHHHHHHHhcCcccccccc
Q psy14515 471 KVIIIINNNNSVYLYCSHRTENPFAFLSFLSLKNITETILNCIYEHRPYWNCYKFQ 526 (586)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~W~~l~~~ 526 (586)
....++.++.++|++|+++|++||+||+..
T Consensus 361 --------------------------~~~~p~~~~~~~~~~v~~~~~~~W~~l~~~ 390 (413)
T 2vqm_A 361 --------------------------LQQRPNANAVRSMEKVMEIHSKYWRCLQRT 390 (413)
T ss_dssp --------------------------HHCCCCHHHHHHHHHHHHHHHTTCGGGTSC
T ss_pred --------------------------hhcCCChHHHHHHHHHHHHHHHHhhhhhcc
Confidence 011234559999999999999999999953
No 3
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A*
Probab=100.00 E-value=1.3e-81 Score=665.57 Aligned_cols=289 Identities=30% Similarity=0.534 Sum_probs=268.4
Q ss_pred CchHHHHHHHHHHcCCCCCceEeCCCCCCHHHHHccCChHHHHHHhhhcCCCchHHHhhhhcCCCccccCCChhhhhhhh
Q psy14515 1 MLKHVNIKDPCKELGLVQRCKFIQPREATQEEILKKHTIEQIELLATTEGSTDVDALEQLSSHYDAIYIHPSSYKLSLLS 80 (586)
Q Consensus 1 m~K~~~I~~~L~~~GL~~~~~~i~pr~At~eeLl~vHs~eYV~~L~~~~~~~~~~~~~~l~~~~d~~~~~~~t~~~a~l~ 80 (586)
++|+++|++.|++.|+++++++++|++|+.++|++||+++||++|++.+.. . . ...+ +.+++++++++++++++
T Consensus 40 p~R~~~i~~~l~~~gl~~~~~~~~p~~a~~~~l~~vH~~~Yv~~l~~~~~~-~-~-~~~l--~~~dtp~~~~~~~~a~~- 113 (369)
T 1zz1_A 40 PDTKRRFHELVCASGQIEHLTPIAAVAATDADILRAHSAAHLENMKRVSNL-P-T-GGDT--GDGITMMGNGGLEIARL- 113 (369)
T ss_dssp THHHHHHHHHHHHTTGGGGSEECCCCCCCHHHHHTTSCHHHHHHHHHHHHS-T-T-CEEC--SSSSCEECTTTHHHHHH-
T ss_pred HHHHHHHHHHHHhcCCCccceEeCCCcCCHHHHHHhccHHHHHHHHHhCcc-c-c-ceec--CCCCCCCChHHHHHHHH-
Confidence 479999999999999999999999999999999999999999999987531 0 0 1112 23357899999998888
Q ss_pred cCchhHHhhhcccCCCCCchhhhHHHhhccHHHHHHHHhccCcccceEeecCCCCCCCccccCCccccchHHHHHHHHHh
Q psy14515 81 AGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNGMAVIRPPGHHAMKSEYCGYCFFNNVALAAQHALD 160 (586)
Q Consensus 81 ~g~~~~~~~~~~~~~~~~~~~~aa~~AaG~ti~aa~~V~~g~~~ngfAivRPPGHHA~~~~a~GFC~fNNvAIAAk~al~ 160 (586)
++|+++.|+++|++|+++++||++|||||||++++++|||+|||+||||++|++
T Consensus 114 --------------------------aaG~~l~aa~~v~~g~~~~afa~~rppGHHA~~~~a~GFC~fNnvAiAa~~l~~ 167 (369)
T 1zz1_A 114 --------------------------SAGGAVELTRRVATGELSAGYALVNPPGHHAPHNAAMGFCIFNNTSVAAGYARA 167 (369)
T ss_dssp --------------------------HHHHHHHHHHHHHTTSCSEEEECCSSCCTTCCTTCCBTTBSSCHHHHHHHHHHH
T ss_pred --------------------------HHHHHHHHHHHHHhCCCcceEEEecCCccCcCCCCCCCchHhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCeEEEEecccccCccceeccccCCceEEEeeccccCCCCCC-CCCCCCCccccccCCccceeeecCCCCCCCchHH
Q psy14515 161 NTSVSRVLIVDWDVHHGQATQQMFYNDNRVVYFSIHRYEHGTFWP-NLRESEYDHIGEGIGKGYNFNIPLNKTHMKDADY 239 (586)
Q Consensus 161 ~~g~~RVlIVD~DVHHGNGTQ~iFy~dp~VlyiSiHry~~g~fyP-~~~~~~~~~~G~g~G~G~nvNVPl~~~g~~D~DY 239 (586)
++|++||+|||||||||||||+|||+||+|||+|+|++. ||| +++ ..+++|.|.|+|||+||||+
T Consensus 168 ~~g~~RV~IvD~DvHHGnGTq~iF~~d~~Vl~~SiH~~~---~yP~~tG--~~~e~G~g~g~g~~vNvPL~--------- 233 (369)
T 1zz1_A 168 VLGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLHQHL---CFPPDSG--YSTERGAGNGHGYNINVPLP--------- 233 (369)
T ss_dssp TSCCSCEEEEECSSSCCHHHHHHTTTCTTEEEEEEEETT---SSSTTCC--CTTCCCCGGGTTCEEEEEEC---------
T ss_pred hcCCCeEEEEecCCCCchhhhHHhcCCCCEEEEeccCCC---CCCCCCC--cccccCCCCCCceEEeeecC---------
Confidence 999999999999999999999999999999999999973 899 875 56899999999999999996
Q ss_pred HHHHHHhhhhhhhcCCccccchhhhHHHHHHhhhCCCCCCCCCCCCCCCCCccccccchhHhHhhhccCccchhhhhhhh
Q psy14515 240 MAVFHQVLLPMVAEGGYCLKSLAEGAALTLRALLDDPCPNFETLGTPSERPKIWKEGKQCLVLALKHIVPQNSILSNLDR 319 (586)
Q Consensus 240 laif~~vl~p~aleggy~~~sl~~~~~~t~~~llGdp~p~~~~~~~p~~~p~~w~~~r~~~~~~~~h~~~~~~i~~~~~~ 319 (586)
T Consensus 234 -------------------------------------------------------------------------------- 233 (369)
T 1zz1_A 234 -------------------------------------------------------------------------------- 233 (369)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhhhhccCCCCCCCCccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEEcCCcCCCCCcC
Q psy14515 320 ASRRFKLLTFVHLPAENTDVPLLFLLQIPGCYPHRTKSKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPL 399 (586)
Q Consensus 320 ~~~r~a~~~~~hs~~~~~d~~~~f~~~i~~~~p~~~~~~g~gd~~yl~a~~~ivlPi~~~f~PdlVlvsaGfDa~~~Dpl 399 (586)
.|++|.+|+.+|+++|+|++++|+||+||||||||++.+|||
T Consensus 234 --------------------------------------~g~~d~~yl~~~~~~v~p~l~~f~PdlIvvsaG~Da~~~DpL 275 (369)
T 1zz1_A 234 --------------------------------------PGSGNAAYLHAMDQVVLPALRAYRPQLIIVGSGFDASMLDPL 275 (369)
T ss_dssp --------------------------------------TTCBHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBTTCTT
T ss_pred --------------------------------------CCCCHHHHHHHHHHHHHHHHHHcCCCEEEEeCCccCCCCCCC
Confidence 378999999999999999999999999999999999999999
Q ss_pred cccccCHHHHHHHHHHHHHhc----CCcEEEEcCCCCCcchHHHHHHHHHHHHcCCCC
Q psy14515 400 GGCKVSPEAYAHFTHWLKALA----QGRIILALEGGYNISSISYAMTLCTKALLGDPL 453 (586)
Q Consensus 400 G~~~vt~~~y~~~t~~L~~la----~grvv~vLEGGYn~~~ia~~~~~~~~~Llg~~~ 453 (586)
|+++||+++|.+++++|+++| +||++++|||||+++++++|+.+++++|+|.++
T Consensus 276 g~l~lt~~g~~~~~~~l~~~a~~~~~g~vv~vleGGY~~~~l~~~~~~~~~~l~g~~~ 333 (369)
T 1zz1_A 276 ARMMVTADGFRQMARRTIDCAADICDGRIVFVQEGGYSPHYLPFCGLAVIEELTGVRS 333 (369)
T ss_dssp CCCBBCHHHHHHHHHHHHHHHHHHSTTCEEEEECCCCCTTTHHHHHHHHHHHHHCCCC
T ss_pred CCcccCHHHHHHHHHHHHHHHHHhCCCCEEEEECCCCCccHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999986 799999999999999999999999999999875
No 4
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens}
Probab=100.00 E-value=4.5e-77 Score=631.23 Aligned_cols=292 Identities=23% Similarity=0.423 Sum_probs=263.5
Q ss_pred CchHHHHHHHHHHcCCCCCceEeCCCCCCHHHHHccCChHHHHHHhhhcCCCchH---HHhhhhcCCCccccCCChhhhh
Q psy14515 1 MLKHVNIKDPCKELGLVQRCKFIQPREATQEEILKKHTIEQIELLATTEGSTDVD---ALEQLSSHYDAIYIHPSSYKLS 77 (586)
Q Consensus 1 m~K~~~I~~~L~~~GL~~~~~~i~pr~At~eeLl~vHs~eYV~~L~~~~~~~~~~---~~~~l~~~~d~~~~~~~t~~~a 77 (586)
+.|+++|+++|+++||++++++++|++|+.+||++||+++||++|++.+.....+ ....+..+. +++++++++++|
T Consensus 26 p~Rl~~i~~~l~~~gl~~~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~~~~~~~~~~~~~l~~-Dtpv~~~~~e~a 104 (376)
T 4a69_A 26 PHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPTNMQGFTKSLNAFNVGD-DCPVFPGLFEFC 104 (376)
T ss_dssp THHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHCCTTTGGGGHHHHHHHTCSS-SSCCCTTHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCceEeCCCCCCHHHHHHhCCHHHHHHHHHhCcccchhhhhhhceeccCC-CCCcchHHHHHH
Confidence 4699999999999999999999999999999999999999999999876543211 122232223 367888888888
Q ss_pred hhhcCchhHHhhhcccCCCCCchhhhHHHhhccHHHHHHHHhccCcccceEeecCCC-CCCCccccCCccccchHHHHHH
Q psy14515 78 LLSAGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNGMAVIRPPG-HHAMKSEYCGYCFFNNVALAAQ 156 (586)
Q Consensus 78 ~l~~g~~~~~~~~~~~~~~~~~~~~aa~~AaG~ti~aa~~V~~g~~~ngfAivRPPG-HHA~~~~a~GFC~fNNvAIAAk 156 (586)
++ +||++|.||++|++|+.+ +|++|||| |||+++++||||+|||+||||+
T Consensus 105 ~~---------------------------aaGgtl~Aa~~v~~g~~~--~A~~~~gG~HHA~~~~a~GFC~~NdvAiAa~ 155 (376)
T 4a69_A 105 SR---------------------------YTGASLQGATQLNNKICD--IAINWAGGLHHAKKFEASGFCYVNDIVIGIL 155 (376)
T ss_dssp HH---------------------------HHHHHHHHHHHHHTTSCS--EEEETTCCCTTCBTTBCBTTBSSCHHHHHHH
T ss_pred HH---------------------------HHHHHHHHHHHHHcCCcc--eeeeCCCCCCcCCcCCCCcchhhhHHHHHHH
Confidence 87 999999999999999754 67788887 9999999999999999999999
Q ss_pred HHHhhCCCCeEEEEecccccCccceeccccCCceEEEeeccccCCCCCCCCCCCCCccccccCCccceeeecCCCCCCCc
Q psy14515 157 HALDNTSVSRVLIVDWDVHHGQATQQMFYNDNRVVYFSIHRYEHGTFWPNLRESEYDHIGEGIGKGYNFNIPLNKTHMKD 236 (586)
Q Consensus 157 ~al~~~g~~RVlIVD~DVHHGNGTQ~iFy~dp~VlyiSiHry~~g~fyP~~~~~~~~~~G~g~G~G~nvNVPl~~~g~~D 236 (586)
+|+++ .+||||||||||||||||++||+||+|||+|+|+|+.+ |||+++ +.+++|.|.|+||++||||+
T Consensus 156 ~l~~~--~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~-~fPgtG--~~~e~G~g~g~g~~vNvPL~------ 224 (376)
T 4a69_A 156 ELLKY--HPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNY-FFPGTG--DMYEVGAESGRYYCLNVPLR------ 224 (376)
T ss_dssp HHTTT--CSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECSTT-CTTCCC--CTTCCCCGGGTTSEEEEEEC------
T ss_pred HHHHh--CCcEEEEeccCCCCcchhhHhcCCCCEEEEecccCCCc-CCCCCC--CccccCCCCCCceeEeeecC------
Confidence 99876 39999999999999999999999999999999998654 899965 67899999999999999996
Q ss_pred hHHHHHHHHhhhhhhhcCCccccchhhhHHHHHHhhhCCCCCCCCCCCCCCCCCccccccchhHhHhhhccCccchhhhh
Q psy14515 237 ADYMAVFHQVLLPMVAEGGYCLKSLAEGAALTLRALLDDPCPNFETLGTPSERPKIWKEGKQCLVLALKHIVPQNSILSN 316 (586)
Q Consensus 237 ~DYlaif~~vl~p~aleggy~~~sl~~~~~~t~~~llGdp~p~~~~~~~p~~~p~~w~~~r~~~~~~~~h~~~~~~i~~~ 316 (586)
T Consensus 225 -------------------------------------------------------------------------------- 224 (376)
T 4a69_A 225 -------------------------------------------------------------------------------- 224 (376)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhhhhhhhccCCCCCCCCccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEEcCCcCCCC
Q psy14515 317 LDRASRRFKLLTFVHLPAENTDVPLLFLLQIPGCYPHRTKSKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVN 396 (586)
Q Consensus 317 ~~~~~~r~a~~~~~hs~~~~~d~~~~f~~~i~~~~p~~~~~~g~gd~~yl~a~~~ivlPi~~~f~PdlVlvsaGfDa~~~ 396 (586)
.|++|.+|+.+|+.+|+|++++|+||+||||||||++.+
T Consensus 225 -----------------------------------------~G~~D~~yl~~~~~~l~p~~~~f~Pd~IvvsaG~Da~~~ 263 (376)
T 4a69_A 225 -----------------------------------------DGIDDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGC 263 (376)
T ss_dssp -----------------------------------------TTCBHHHHHHHHHHHHHHHHHHHCCSEEEEECCGGGBTT
T ss_pred -----------------------------------------CCCCHHHHHHHHHHHHHHHHHHhCCCEEEEeCcccCCCC
Confidence 378999999999999999999999999999999999999
Q ss_pred CcCcccccCHHHHHHHHHHHHHhcCCcEEEEcCCCCCcchHHHHHHHHHHHHcCCCCCC
Q psy14515 397 DPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYAMTLCTKALLGDPLPL 455 (586)
Q Consensus 397 DplG~~~vt~~~y~~~t~~L~~la~grvv~vLEGGYn~~~ia~~~~~~~~~Llg~~~p~ 455 (586)
||||+++||+++|++++++|+++ ++|+++++||||++.++++||+.++..|+|.++|.
T Consensus 264 DpLg~l~Lt~~g~~~~~~~l~~~-~~p~v~v~eGGY~~~~var~w~~~~a~l~g~~~~~ 321 (376)
T 4a69_A 264 DRLGCFNLSIRGHGECVEYVKSF-NIPLLVLGGGGYTVRNVARCWTYETSLLVEEAISE 321 (376)
T ss_dssp CSSCCCBBCHHHHHHHHHHHHTT-CCCEEEECCCCCSHHHHHHHHHHHHHHHTTCCCCS
T ss_pred CcccCeecCHHHHHHHHHHHHHc-CCCEEEEECCCCChhHHHHHHHHHHHHhcCCCccC
Confidence 99999999999999999999998 58999999999999999999999999999998764
No 5
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A*
Probab=100.00 E-value=2.8e-77 Score=633.71 Aligned_cols=291 Identities=28% Similarity=0.431 Sum_probs=261.2
Q ss_pred CchHHHHHHHHHHcCCCCCceEeCCCCCCHHHHHccCChHHHHHHhhhcCCC--chHHHhhhhcCCCccccCCChhhhhh
Q psy14515 1 MLKHVNIKDPCKELGLVQRCKFIQPREATQEEILKKHTIEQIELLATTEGST--DVDALEQLSSHYDAIYIHPSSYKLSL 78 (586)
Q Consensus 1 m~K~~~I~~~L~~~GL~~~~~~i~pr~At~eeLl~vHs~eYV~~L~~~~~~~--~~~~~~~l~~~~d~~~~~~~t~~~a~ 78 (586)
++|+++|++.|+++|+++++++++|++|+.++|++||+++||++|++.+... ..+.+..+....++++++++++++|+
T Consensus 25 p~R~~~i~~~l~~~gl~~~~~~~~p~~at~~~l~~vH~~~Yv~~l~~~~~~~~~~~~~~~~~~l~~~dtp~~~~~~~~a~ 104 (375)
T 1c3p_A 25 IPRVSLLLRFKDAMNLIDEKELIKSRPATKEELLLFHTEDYINTLMEAERCQCVPKGAREKYNIGGYENPVSYAMFTGSS 104 (375)
T ss_dssp SCCHHHHHHHHHHTTCCCGGGEEECCCCCHHHHTTTSCHHHHHHHHHHHHHTSCCTTHHHHHCCSSSSSCSSTTTTHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCeEeCCCCCCHHHHHHhCCHHHHHHHHHhccccCCChHHhhccccCCCCcccChhHHHHHH
Confidence 4799999999999999999999999999999999999999999998875321 11223333332345688888888888
Q ss_pred hhcCchhHHhhhcccCCCCCchhhhHHHhhccHHHHHHHHhccCcccceEeecCCC--CCCCccccCCccccchHHHHHH
Q psy14515 79 LSAGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNGMAVIRPPG--HHAMKSEYCGYCFFNNVALAAQ 156 (586)
Q Consensus 79 l~~g~~~~~~~~~~~~~~~~~~~~aa~~AaG~ti~aa~~V~~g~~~ngfAivRPPG--HHA~~~~a~GFC~fNNvAIAAk 156 (586)
+ +||++++||++|++|+ .| +|||| |||++++++|||+|||+||||+
T Consensus 105 ~---------------------------aaGg~l~aa~~v~~g~----~a-~~ppGG~HHA~~~~a~GFC~fNnvAiAa~ 152 (375)
T 1c3p_A 105 L---------------------------ATGSTVQAIEEFLKGN----VA-FNPAGGMHHAFKSRANGFCYINNPAVGIE 152 (375)
T ss_dssp H---------------------------HHHHHHHHHHHHHTTC----EE-EETTCCCTTCBTTBCBTTBSSCHHHHHHH
T ss_pred H---------------------------HhhHHHHHHHHHHcCC----ce-eecCcccceeeeccCCCceeecHHHHHHH
Confidence 7 9999999999999997 34 56777 9999999999999999999999
Q ss_pred HHHhhCCCCeEEEEecccccCccceeccccCCceEEEeeccccCCCCCCCCCCCCCcccc-ccCCccceeeecCCCCCCC
Q psy14515 157 HALDNTSVSRVLIVDWDVHHGQATQQMFYNDNRVVYFSIHRYEHGTFWPNLRESEYDHIG-EGIGKGYNFNIPLNKTHMK 235 (586)
Q Consensus 157 ~al~~~g~~RVlIVD~DVHHGNGTQ~iFy~dp~VlyiSiHry~~g~fyP~~~~~~~~~~G-~g~G~G~nvNVPl~~~g~~ 235 (586)
+|+++ +.+||+|||||||||||||+|||+||+|||+|+|+++ ..|||+++ ..+++| .|.|+|||+||||+
T Consensus 153 ~l~~~-g~~RV~IvD~DvHHGnGtq~iF~~dp~Vl~~SiH~~~-~~ffPgtG--~~~e~G~~g~g~g~~vNvPL~----- 223 (375)
T 1c3p_A 153 YLRKK-GFKRILYIDLDAHHCDGVQEAFYDTDQVFVLSLHQSP-EYAFPFEK--GFLEEIGEGKGKGYNLNIPLP----- 223 (375)
T ss_dssp HHHHT-TCCCEEEEECSSSCCHHHHHHHTTCSSEEEEEEEECT-TTSTTSSS--CCTTCCCCGGGTTSEEEEEEC-----
T ss_pred HHHHh-CCCeEEEEecCCCCCHHHHHHhccCCCEEEEecccCC-CCCCCCCC--CccccCCcCCCCceEEEEeCC-----
Confidence 99865 6799999999999999999999999999999999975 34899875 678999 99999999999996
Q ss_pred chHHHHHHHHhhhhhhhcCCccccchhhhHHHHHHhhhCCCCCCCCCCCCCCCCCccccccchhHhHhhhccCccchhhh
Q psy14515 236 DADYMAVFHQVLLPMVAEGGYCLKSLAEGAALTLRALLDDPCPNFETLGTPSERPKIWKEGKQCLVLALKHIVPQNSILS 315 (586)
Q Consensus 236 D~DYlaif~~vl~p~aleggy~~~sl~~~~~~t~~~llGdp~p~~~~~~~p~~~p~~w~~~r~~~~~~~~h~~~~~~i~~ 315 (586)
T Consensus 224 -------------------------------------------------------------------------------- 223 (375)
T 1c3p_A 224 -------------------------------------------------------------------------------- 223 (375)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhhhhhhhhccCCCCCCCCccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEEcCCcCCC
Q psy14515 316 NLDRASRRFKLLTFVHLPAENTDVPLLFLLQIPGCYPHRTKSKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACV 395 (586)
Q Consensus 316 ~~~~~~~r~a~~~~~hs~~~~~d~~~~f~~~i~~~~p~~~~~~g~gd~~yl~a~~~ivlPi~~~f~PdlVlvsaGfDa~~ 395 (586)
.|++|.+|+.+|+.+|+|++++|+||+||||||||++.
T Consensus 224 ------------------------------------------~g~~D~~yl~a~~~~l~p~l~~F~PdlIvvsaG~Da~~ 261 (375)
T 1c3p_A 224 ------------------------------------------KGLNDNEFLFALEKSLEIVKEVFEPEVYLLQLGTDPLL 261 (375)
T ss_dssp ------------------------------------------TTCCHHHHHHHHHHHHHHHHHHCCCSEEEEECCSTTBT
T ss_pred ------------------------------------------CCCCHHHHHHHHHHHHHHHHHHhCCCEEEEECCccccC
Confidence 37899999999999999999999999999999999999
Q ss_pred CCcCcccccCHHHHHHHHHHHHHhcCCcEEEEcCCCCCcchHHHHHHHHHHHHcCCCCCC
Q psy14515 396 NDPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYAMTLCTKALLGDPLPL 455 (586)
Q Consensus 396 ~DplG~~~vt~~~y~~~t~~L~~la~grvv~vLEGGYn~~~ia~~~~~~~~~Llg~~~p~ 455 (586)
+||||+++||+++|.+++++|+++|. ++|++|||||++.++++||++++++|+|.++|.
T Consensus 262 ~DpLg~l~lt~~g~~~~~~~l~~~a~-~vv~vleGGY~~~~l~~~~~~~~~~l~g~~~~~ 320 (375)
T 1c3p_A 262 EDYLSKFNLSNVAFLKAFNIVREVFG-EGVYLGGGGYHPYALARAWTLIWCELSGREVPE 320 (375)
T ss_dssp TCTTCSCCBCHHHHHHHHHHHHHHHC-SCEEECCCCCCHHHHHHHHHHHHHHHHTCCCCS
T ss_pred CCCCCCcccCHHHHHHHHHHHHHhcc-ceEEEECCCCChHHHHHHHHHHHHHHcCCCCCc
Confidence 99999999999999999999999995 599999999999999999999999999998664
No 6
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens}
Probab=100.00 E-value=1.8e-76 Score=624.32 Aligned_cols=291 Identities=27% Similarity=0.473 Sum_probs=263.3
Q ss_pred CchHHHHHHHHHHcCCCCCceEeCCCCCCHHHHHccCChHHHHHHhhhcCCCch---HHHhhhhcCCCccccCCChhhhh
Q psy14515 1 MLKHVNIKDPCKELGLVQRCKFIQPREATQEEILKKHTIEQIELLATTEGSTDV---DALEQLSSHYDAIYIHPSSYKLS 77 (586)
Q Consensus 1 m~K~~~I~~~L~~~GL~~~~~~i~pr~At~eeLl~vHs~eYV~~L~~~~~~~~~---~~~~~l~~~~d~~~~~~~t~~~a 77 (586)
..|+++|+++|+++||++++++++|++|+.+||++||+++||++|++.+..... ..+..+..+. ++++++++++++
T Consensus 26 P~Rl~~i~~~L~~~gl~~~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~~~~~~~~~~~~~l~~-Dtp~~~~~~e~a 104 (367)
T 3max_A 26 PHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMTKYHSDEYIKFLRSIRPDNMSEYSKQMQRFNVGE-DCPVFDGLFEFC 104 (367)
T ss_dssp THHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHCCGGGGGGCHHHHHHTTCSS-SSCCCTTHHHHH
T ss_pred HHHHHHHHHHHHhcCCcccCeeeCCCCCCHHHHHhhCCHHHHHHHHHhCccccchhhhHhhhcCCCC-CCCCchHHHHHH
Confidence 369999999999999999999999999999999999999999999986532211 1122233322 467888888888
Q ss_pred hhhcCchhHHhhhcccCCCCCchhhhHHHhhccHHHHHHHHhccCcccceEeecCCC-CCCCccccCCccccchHHHHHH
Q psy14515 78 LLSAGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNGMAVIRPPG-HHAMKSEYCGYCFFNNVALAAQ 156 (586)
Q Consensus 78 ~l~~g~~~~~~~~~~~~~~~~~~~~aa~~AaG~ti~aa~~V~~g~~~ngfAivRPPG-HHA~~~~a~GFC~fNNvAIAAk 156 (586)
++ +||+++.||++|++|+ +++|++|||| |||++++++|||+|||+||||+
T Consensus 105 ~~---------------------------aaGgsl~aa~~v~~~~--~~~Ai~~pgG~HHA~~~~a~GFC~~NdvaiAa~ 155 (367)
T 3max_A 105 QL---------------------------STGGSVAGAVKLNRQQ--TDMAVNWAGGLHHAKKSEASGFCYVNDIVLAIL 155 (367)
T ss_dssp HH---------------------------HHHHHHHHHHHHHTTS--CSEEEETTCCCTTCBTTBCBTTBCSCHHHHHHH
T ss_pred HH---------------------------HHHHHHHHHHHhcccC--cceEecCCCCCCcCCcCCCCCchhhhHHHHHHH
Confidence 77 9999999999998875 5799999999 9999999999999999999999
Q ss_pred HHHhhCCCCeEEEEecccccCccceeccccCCceEEEeeccccCCCCCCCCCCCCCccccccCCccceeeecCCCCCCCc
Q psy14515 157 HALDNTSVSRVLIVDWDVHHGQATQQMFYNDNRVVYFSIHRYEHGTFWPNLRESEYDHIGEGIGKGYNFNIPLNKTHMKD 236 (586)
Q Consensus 157 ~al~~~g~~RVlIVD~DVHHGNGTQ~iFy~dp~VlyiSiHry~~g~fyP~~~~~~~~~~G~g~G~G~nvNVPl~~~g~~D 236 (586)
+|++. .+||+|||||||||||||++||+||+|||+|+|++ |.|||+++ +.+++|.|.|+||++||||+
T Consensus 156 ~l~~~--~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~--~~~fPgtg--~~~e~G~g~g~g~~vNvPL~------ 223 (367)
T 3max_A 156 ELLKY--HQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKY--GEYFPGTG--DLRDIGAGKGKYYAVNFPMR------ 223 (367)
T ss_dssp HHTTT--CSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEEC--SSCTTCCC--CTTCCCCGGGTTCEEEEEEC------
T ss_pred HHHHc--CCcEEEEecCCCCCchhhHHhcCCCCEEEEecccC--CCCCCCCC--CccccCCCCCCceEEEEecC------
Confidence 99865 49999999999999999999999999999999997 46999875 67899999999999999996
Q ss_pred hHHHHHHHHhhhhhhhcCCccccchhhhHHHHHHhhhCCCCCCCCCCCCCCCCCccccccchhHhHhhhccCccchhhhh
Q psy14515 237 ADYMAVFHQVLLPMVAEGGYCLKSLAEGAALTLRALLDDPCPNFETLGTPSERPKIWKEGKQCLVLALKHIVPQNSILSN 316 (586)
Q Consensus 237 ~DYlaif~~vl~p~aleggy~~~sl~~~~~~t~~~llGdp~p~~~~~~~p~~~p~~w~~~r~~~~~~~~h~~~~~~i~~~ 316 (586)
T Consensus 224 -------------------------------------------------------------------------------- 223 (367)
T 3max_A 224 -------------------------------------------------------------------------------- 223 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhhhhhhhccCCCCCCCCccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEEcCCcCCCC
Q psy14515 317 LDRASRRFKLLTFVHLPAENTDVPLLFLLQIPGCYPHRTKSKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVN 396 (586)
Q Consensus 317 ~~~~~~r~a~~~~~hs~~~~~d~~~~f~~~i~~~~p~~~~~~g~gd~~yl~a~~~ivlPi~~~f~PdlVlvsaGfDa~~~ 396 (586)
.|++|.+|+.+|+.+|+|++++|+||+||||||||++.+
T Consensus 224 -----------------------------------------~g~~d~~y~~~~~~~~~~~~~~f~Pd~ivvsaG~D~~~~ 262 (367)
T 3max_A 224 -----------------------------------------DGIDDESYGQIFKPIISKVMEMYQPSAVVLQCGADSLSG 262 (367)
T ss_dssp -----------------------------------------TTCCHHHHHHHHHHHHHHHHHHHCCSEEEEECCGGGBTT
T ss_pred -----------------------------------------CCCCHHHHHHHHHHHHHHHHHHhCCCEEEEECCccCcCC
Confidence 378999999999999999999999999999999999999
Q ss_pred CcCcccccCHHHHHHHHHHHHHhcCCcEEEEcCCCCCcchHHHHHHHHHHHHcCCCCCC
Q psy14515 397 DPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYAMTLCTKALLGDPLPL 455 (586)
Q Consensus 397 DplG~~~vt~~~y~~~t~~L~~la~grvv~vLEGGYn~~~ia~~~~~~~~~Llg~~~p~ 455 (586)
||||+++||+++|.+++++++++ ++|+++++||||++.++++||+.++..++|.++|.
T Consensus 263 Dplg~~~lt~~g~~~~~~~~~~~-~~p~v~~~eGGY~~~~var~wt~~ta~~~~~~i~~ 320 (367)
T 3max_A 263 DRLGCFNLTVKGHAKCVEVVKTF-NLPLLMLGGGGYTIRNVARCWTYETAVALDCEIPN 320 (367)
T ss_dssp CSSCCCCBCHHHHHHHHHHHHTT-CCCEEEECCCCCSHHHHHHHHHHHHHHHTTCCCCS
T ss_pred CCCCCeeeCHHHHHHHHHHHHhc-CCCEEEEeCCCCChhHHHHHHHHHHHHHhhccccc
Confidence 99999999999999999999997 68999999999999999999999999999998874
No 7
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A*
Probab=100.00 E-value=1.2e-76 Score=628.71 Aligned_cols=291 Identities=23% Similarity=0.432 Sum_probs=261.6
Q ss_pred chHHHHHHHHHHcCCCCCceEeCCCCCCHHHHHccCChHHHHHHhhhcCCCc--hHHHhhhhcCCCccccCCChhhhhhh
Q psy14515 2 LKHVNIKDPCKELGLVQRCKFIQPREATQEEILKKHTIEQIELLATTEGSTD--VDALEQLSSHYDAIYIHPSSYKLSLL 79 (586)
Q Consensus 2 ~K~~~I~~~L~~~GL~~~~~~i~pr~At~eeLl~vHs~eYV~~L~~~~~~~~--~~~~~~l~~~~d~~~~~~~t~~~a~l 79 (586)
+|+++|+++|+++||++++++++|++|+.++|++||+++||++|++.+.... ......+...+| ++++++++++|++
T Consensus 36 ~Rl~~i~~ll~~~gl~~~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~~~~~~~~~~~~lg~D-tp~~~~~~e~a~~ 114 (388)
T 3ew8_A 36 KRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSIEYGLGYL-CPATEGIFDYAAA 114 (388)
T ss_dssp THHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHHHHHC--------CCSCSSS-SCCCTTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcccCeEeCCCCCCHHHHHhhCCHHHHHHHHHhcccccccchhhhhccCCCC-CCCChhHHHHHHH
Confidence 5999999999999999999999999999999999999999999998653211 111222333333 5788888888777
Q ss_pred hcCchhHHhhhcccCCCCCchhhhHHHhhccHHHHHHHHhccCcccceEeecCCC-CCCCccccCCccccchHHHHHHHH
Q psy14515 80 SAGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNGMAVIRPPG-HHAMKSEYCGYCFFNNVALAAQHA 158 (586)
Q Consensus 80 ~~g~~~~~~~~~~~~~~~~~~~~aa~~AaG~ti~aa~~V~~g~~~ngfAivRPPG-HHA~~~~a~GFC~fNNvAIAAk~a 158 (586)
+||++|.||++|++|+. .+|++|||| |||++++++|||+|||+||||++|
T Consensus 115 ---------------------------aaGgsl~Aa~~v~~g~~--~~Ai~~pGG~HHA~~~~a~GFC~~NdiaiAa~~l 165 (388)
T 3ew8_A 115 ---------------------------IGGATITAAQCLIDGMC--KVAINWSGGWHHAKKDEASGFCYLNDAVLGILRL 165 (388)
T ss_dssp ---------------------------HHHHHHHHHHHHHTTSC--SEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHH
T ss_pred ---------------------------HHHHHHHHHHHHHcCCC--ceeeecCCcccceeecCCCCchhhhHHHHHHHHH
Confidence 99999999999999975 478999999 999999999999999999999999
Q ss_pred HhhCCCCeEEEEecccccCccceeccccCCceEEEeeccccCCCCCCCCCCCCCccccccCCccceeeecCCCCCCCchH
Q psy14515 159 LDNTSVSRVLIVDWDVHHGQATQQMFYNDNRVVYFSIHRYEHGTFWPNLRESEYDHIGEGIGKGYNFNIPLNKTHMKDAD 238 (586)
Q Consensus 159 l~~~g~~RVlIVD~DVHHGNGTQ~iFy~dp~VlyiSiHry~~g~fyP~~~~~~~~~~G~g~G~G~nvNVPl~~~g~~D~D 238 (586)
++. .+||+|||||||||||||++||+||+|||+|+|+|+.+ |||+++ ..+++|.|.|+||||||||+
T Consensus 166 ~~~--~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~-~fPgtG--~~~e~G~g~g~g~~vNvPL~-------- 232 (388)
T 3ew8_A 166 RRK--FERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPG-FFPGTG--DVSDVGLGKGRYYSVNVPIQ-------- 232 (388)
T ss_dssp TTT--CSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECCTT-CTTCCC--CTTCCCCGGGTTSEEEEEEC--------
T ss_pred Hhc--CCeEEEEecCCCCChhHHHHhccCCCEEEEecCCCCCC-CCCCCC--CcccccCCCCcceeeeccCC--------
Confidence 864 69999999999999999999999999999999999765 999975 67899999999999999996
Q ss_pred HHHHHHHhhhhhhhcCCccccchhhhHHHHHHhhhCCCCCCCCCCCCCCCCCccccccchhHhHhhhccCccchhhhhhh
Q psy14515 239 YMAVFHQVLLPMVAEGGYCLKSLAEGAALTLRALLDDPCPNFETLGTPSERPKIWKEGKQCLVLALKHIVPQNSILSNLD 318 (586)
Q Consensus 239 Ylaif~~vl~p~aleggy~~~sl~~~~~~t~~~llGdp~p~~~~~~~p~~~p~~w~~~r~~~~~~~~h~~~~~~i~~~~~ 318 (586)
T Consensus 233 -------------------------------------------------------------------------------- 232 (388)
T 3ew8_A 233 -------------------------------------------------------------------------------- 232 (388)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhhhhhccCCCCCCCCccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEEcCCcCCCCCc
Q psy14515 319 RASRRFKLLTFVHLPAENTDVPLLFLLQIPGCYPHRTKSKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDP 398 (586)
Q Consensus 319 ~~~~r~a~~~~~hs~~~~~d~~~~f~~~i~~~~p~~~~~~g~gd~~yl~a~~~ivlPi~~~f~PdlVlvsaGfDa~~~Dp 398 (586)
.|++|.+|+.+|+.+|+|++++|+||+||||||||++.+||
T Consensus 233 ---------------------------------------~G~~d~~y~~~~~~~l~p~~~~F~PdlIvvsaG~Da~~~Dp 273 (388)
T 3ew8_A 233 ---------------------------------------DGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDP 273 (388)
T ss_dssp ---------------------------------------TTCCHHHHHHHHHHHHHHHHHHHCCSEEEEECCSTTBTTCT
T ss_pred ---------------------------------------CCCCHHHHHHHHHHHHHHHHHHhCCCEEEEECCccCCCCCC
Confidence 37899999999999999999999999999999999999999
Q ss_pred CcccccCHHHHHHHHHHHHHhcCCcEEEEcCCCCCcchHHHHHHHHHHHHcCCCCCC
Q psy14515 399 LGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYAMTLCTKALLGDPLPL 455 (586)
Q Consensus 399 lG~~~vt~~~y~~~t~~L~~la~grvv~vLEGGYn~~~ia~~~~~~~~~Llg~~~p~ 455 (586)
||+++||+++|++++++|+++. .++++++||||++.++++||+.++..|+|.++|.
T Consensus 274 Lg~l~lt~~g~~~~~~~l~~~~-~p~l~~~gGGY~~~~var~w~~~~~~l~g~~l~~ 329 (388)
T 3ew8_A 274 MCSFNMTPVGIGKCLKYILQWQ-LATLILGGGGYNLANTARCWTYLTGVILGKTLSS 329 (388)
T ss_dssp TCCCCBCHHHHHHHHHHHHTTC-CEEEEECCCCCSHHHHHHHHHHHHHHHHTCCCCS
T ss_pred CCCCcCCHHHHHHHHHHHHhcC-CCEEEEECCCCChhHHHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999999874 7999999999999999999999999999998764
No 8
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A*
Probab=100.00 E-value=6.1e-77 Score=622.54 Aligned_cols=285 Identities=28% Similarity=0.479 Sum_probs=248.0
Q ss_pred chHHHHHHHHHHcCCCCCceEeCCCCCCHHHHHccCChHHHHHHhhhcCCCch-----H---------------------
Q psy14515 2 LKHVNIKDPCKELGLVQRCKFIQPREATQEEILKKHTIEQIELLATTEGSTDV-----D--------------------- 55 (586)
Q Consensus 2 ~K~~~I~~~L~~~GL~~~~~~i~pr~At~eeLl~vHs~eYV~~L~~~~~~~~~-----~--------------------- 55 (586)
+|+++|+++|+++||. ++++|++|+.++|++||+++||++|++.+..+.. +
T Consensus 31 ~Rl~~i~~~L~~~gl~---~~~~p~~at~e~L~~vHs~~Yi~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~p~~~~~ 107 (341)
T 3q9b_A 31 FRAEWILAAVKEAGFD---DVVAPARHGLETVLKVHDAGYLNFLETAWDRWKAAGYKGEAIATSFPVRRTSPRIPTDIEG 107 (341)
T ss_dssp HHHHHHHHHHHHTTCC---CEECCCCCCSTTGGGTSCHHHHHHHHHHHHHHHHTTCSSCBCCCBCCCTTCCCCCCSSHHH
T ss_pred HHHHHHHHHHHhCCCC---ceeCCCCCCHHHHHHhCCHHHHHHHHHhhhhhhhcccccccccccccccccccccccchhc
Confidence 5899999999999986 4899999999999999999999999986421000 0
Q ss_pred HHhhhhcCCCccccCCChhhhhhhhcCchhHHhhhcccCCCCCchhhhHHHhhccHHHHHHHHhccCcccceEeecCCCC
Q psy14515 56 ALEQLSSHYDAIYIHPSSYKLSLLSAGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNGMAVIRPPGH 135 (586)
Q Consensus 56 ~~~~l~~~~d~~~~~~~t~~~a~l~~g~~~~~~~~~~~~~~~~~~~~aa~~AaG~ti~aa~~V~~g~~~ngfAivRPPGH 135 (586)
....... .+++++++++++ +++++||+++.|+++|++|+ +++||++|||||
T Consensus 108 ~~g~~~~-d~dt~~~~~~~~---------------------------aa~~aaG~~l~a~~~v~~g~-~~afal~rppGH 158 (341)
T 3q9b_A 108 QIGYYCN-AAETAISPGTWE---------------------------AALSSMASAIDGADLIAAGH-KAAFSLCRPPGH 158 (341)
T ss_dssp HHHHTBS-BTTCCBCTTHHH---------------------------HHHHHHHHHHHHHHHHHHTC-SEEEECCSSCCT
T ss_pred ccceecc-CCCCCcChhHHH---------------------------HHHHHHHHHHHHHHHHHhCC-CceEecCCCCCC
Confidence 0000000 112444555544 55559999999999999998 899999999999
Q ss_pred CCCccccCCccccchHHHHHHHHHhhCCCCeEEEEecccccCccceeccccCCceEEEeeccccCCCCCCCCCCCCCccc
Q psy14515 136 HAMKSEYCGYCFFNNVALAAQHALDNTSVSRVLIVDWDVHHGQATQQMFYNDNRVVYFSIHRYEHGTFWPNLRESEYDHI 215 (586)
Q Consensus 136 HA~~~~a~GFC~fNNvAIAAk~al~~~g~~RVlIVD~DVHHGNGTQ~iFy~dp~VlyiSiHry~~g~fyP~~~~~~~~~~ 215 (586)
||++++++|||+|||+||||++|+++ |++||+|||||||||||||+|||+||+|||+|+|+++ +.|||+. .+..+++
T Consensus 159 HA~~~~a~GFC~~NnvaiAa~~l~~~-g~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~-~~~yP~~-tG~~~e~ 235 (341)
T 3q9b_A 159 HAGIDMFGGYCFINNAAVAAQRLLDK-GAKKIAILDVDFHHGNGTQDIFYERGDVFFASLHGDP-AEAFPHF-LGYAEET 235 (341)
T ss_dssp TCBTTBBBTTBSSCHHHHHHHHHHHT-TCSCEEEEECSSSCCHHHHHHHTTCTTEEEEEEEECG-GGSTTCS-SCCTTCC
T ss_pred CCCCCCCCCccccCHHHHHHHHHHHc-CCCeEEEEecCCCCCcchhHHhcCCCCEEEEeccCCC-ccCCCCC-CCccccc
Confidence 99999999999999999999999975 7999999999999999999999999999999999964 4599983 2367899
Q ss_pred cccCCccceeeecCCCCCCCchHHHHHHHHhhhhhhhcCCccccchhhhHHHHHHhhhCCCCCCCCCCCCCCCCCccccc
Q psy14515 216 GEGIGKGYNFNIPLNKTHMKDADYMAVFHQVLLPMVAEGGYCLKSLAEGAALTLRALLDDPCPNFETLGTPSERPKIWKE 295 (586)
Q Consensus 216 G~g~G~G~nvNVPl~~~g~~D~DYlaif~~vl~p~aleggy~~~sl~~~~~~t~~~llGdp~p~~~~~~~p~~~p~~w~~ 295 (586)
|.|.|+|||+||||+
T Consensus 236 G~g~g~g~~vNvpL~----------------------------------------------------------------- 250 (341)
T 3q9b_A 236 GKGAGAGTTANYPMG----------------------------------------------------------------- 250 (341)
T ss_dssp CCGGGTTCEEEEEEC-----------------------------------------------------------------
T ss_pred CCCCCCceeEeeecC-----------------------------------------------------------------
Confidence 999999999999996
Q ss_pred cchhHhHhhhccCccchhhhhhhhhhhhhhhhhhccCCCCCCCCccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q psy14515 296 GKQCLVLALKHIVPQNSILSNLDRASRRFKLLTFVHLPAENTDVPLLFLLQIPGCYPHRTKSKGMSDPEYIAAFQQVILP 375 (586)
Q Consensus 296 ~r~~~~~~~~h~~~~~~i~~~~~~~~~r~a~~~~~hs~~~~~d~~~~f~~~i~~~~p~~~~~~g~gd~~yl~a~~~ivlP 375 (586)
.|++|.+|+.+|+.+ +|
T Consensus 251 --------------------------------------------------------------~g~~d~~y~~~~~~~-l~ 267 (341)
T 3q9b_A 251 --------------------------------------------------------------RGTPYSVWGEALTDS-LK 267 (341)
T ss_dssp --------------------------------------------------------------TTCBHHHHHHHHHHH-HH
T ss_pred --------------------------------------------------------------CCCChHHHHHHHHHH-HH
Confidence 378899999999885 57
Q ss_pred HHHhcCCCEEEEEcCCcCCCCCcCcccccCHHHHHHHHHHHHHhcCCcEEEEcCCCCCcchHHHHHHHHHHHHcC
Q psy14515 376 IAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYAMTLCTKALLG 450 (586)
Q Consensus 376 i~~~f~PdlVlvsaGfDa~~~DplG~~~vt~~~y~~~t~~L~~la~grvv~vLEGGYn~~~ia~~~~~~~~~Llg 450 (586)
.+++|+||+||||||||++.+||||+++||+++|.+++++|++++ +|++++|||||+++++++|+.+++++|.|
T Consensus 268 ~l~~f~Pd~ivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~~-~~~v~vleGGY~~~~l~~~~~~~l~g~~~ 341 (341)
T 3q9b_A 268 RIAAFGAEAIVVSLGVDTFEQDPISFFKLTSPDYITMGRTIAASG-VPLLVVMEGGYGVPEIGLNVANVLKGVAG 341 (341)
T ss_dssp HHHHHTCSCEEEEECCTTBTTCTTCCCBBCTTHHHHHHHHHHTTS-SCEEEEECCCCCCTTHHHHHHHHHHHHHC
T ss_pred HHHhhCCCEEEEeCCccccCCCCCCCccCCHHHHHHHHHHHHHhC-CCEEEEECCCCChHHHHHHHHHHHHHhcC
Confidence 889999999999999999999999999999999999999999986 79999999999999999999999999865
No 9
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B}
Probab=100.00 E-value=2.5e-76 Score=621.33 Aligned_cols=302 Identities=25% Similarity=0.429 Sum_probs=248.5
Q ss_pred chHHHHHHHHHHcCCCCCceEeCCCCCCHHHHHccCChHHHHHHhhhcCCCch----HHHhhhhcCCCccccCCChhhhh
Q psy14515 2 LKHVNIKDPCKELGLVQRCKFIQPREATQEEILKKHTIEQIELLATTEGSTDV----DALEQLSSHYDAIYIHPSSYKLS 77 (586)
Q Consensus 2 ~K~~~I~~~L~~~GL~~~~~~i~pr~At~eeLl~vHs~eYV~~L~~~~~~~~~----~~~~~l~~~~d~~~~~~~t~~~a 77 (586)
+|+++|+++|+++|| ++++|++|+.++|++||+++||++|++.+..+.. ...+.++ .+| |.+..
T Consensus 52 ~Rl~~i~~~L~~~gl----~~~~p~~At~e~L~~vHs~~YI~~l~~~~~~~~~~~~~~~~e~~p----~~~--p~~~~-- 119 (362)
T 3men_A 52 ERAARLVAAAFAMGF----PVREPDDFGIAPIAAVHDTHYLRFLETVHREWKAMPEDWGDEAMS----NIF--VREPN-- 119 (362)
T ss_dssp HHHHHHHHHHHHTTC----CEECCCCCCSHHHHTTSCHHHHHHHHHHHHHHHTSCGGGCSSBCC----CBC--CCSSC--
T ss_pred HHHHHHHHHHHhCCC----eEeCCCCCCHHHHHHhCCHHHHHHHHHhhhhhhhccccccccccc----ccc--ccccc--
Confidence 589999999999998 5899999999999999999999999886421000 0000000 000 00000
Q ss_pred hhhcCch--hHHhhhcccCCCCCchhhhHHHhhccHHHHHHHHhccCcccceEeecCCCCCCCccccCCccccchHHHHH
Q psy14515 78 LLSAGST--IELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNGMAVIRPPGHHAMKSEYCGYCFFNNVALAA 155 (586)
Q Consensus 78 ~l~~g~~--~~~~~~~~~~~~~~~~~~aa~~AaG~ti~aa~~V~~g~~~ngfAivRPPGHHA~~~~a~GFC~fNNvAIAA 155 (586)
..++.. ...-.....+..+.++|.++++++|+++.||++|++|+ +++||++|||||||++++++|||||||+||||
T Consensus 120 -~p~~~~~~~g~~~~d~Dtpv~~~~~~aa~~aaG~~l~aa~~v~~g~-~~afal~rPpGHHA~~~~a~GFC~fNnvAiAa 197 (362)
T 3men_A 120 -ALRGVLAQAARHLADGSCPVGEHTWRAAYWSAQSALAAAAAVRDGA-PAAYALCRPPGHHARVDAAGGFCYLNNAAIAA 197 (362)
T ss_dssp -CCCSHHHHHHHHBCBTTCCBCTTHHHHHHHHHHHHHHHHHHHHTTC-SEEEECCSSCCTTCBTTBBBTTBSSCHHHHHH
T ss_pred -ccccccccccccccCCCCccchhHHHHHHHHHHHHHHHHHHHHcCC-CceEEeCCCCCCCCCCCCCCCccccCHHHHHH
Confidence 000000 00000012233444555556669999999999999999 99999999999999999999999999999999
Q ss_pred HHHHhhCCCCeEEEEecccccCccceeccccCCceEEEeeccccCCCCCCCCCCCCCccccccCCccceeeecCCCCCCC
Q psy14515 156 QHALDNTSVSRVLIVDWDVHHGQATQQMFYNDNRVVYFSIHRYEHGTFWPNLRESEYDHIGEGIGKGYNFNIPLNKTHMK 235 (586)
Q Consensus 156 k~al~~~g~~RVlIVD~DVHHGNGTQ~iFy~dp~VlyiSiHry~~g~fyP~~~~~~~~~~G~g~G~G~nvNVPl~~~g~~ 235 (586)
++|+++ .+||+|||||||||||||+|||+||+|||+|+|+++ +.|||+. .+..+++|.|.|+|||+||||+
T Consensus 198 ~~l~~~--~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~-~~~yP~~-tG~~~e~G~g~g~g~~vNvPL~----- 268 (362)
T 3men_A 198 QALRAR--HARVAVLDTDMHHGQGIQEIFYARRDVLYVSIHGDP-TNFYPAV-AGFDDERGAGEGLGYNVNLPMP----- 268 (362)
T ss_dssp HHHTTT--CSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECC-TTSTTCS-SCCTTCCCSGGGTTSEEEEEEC-----
T ss_pred HHHHHc--CCeEEEEeCcCCCchhHhHHhcCCCCEEEEEecCCC-ccCCCCC-CCccccccCCCCCceeEeeccC-----
Confidence 999876 599999999999999999999999999999999964 4699983 2357899999999999999996
Q ss_pred chHHHHHHHHhhhhhhhcCCccccchhhhHHHHHHhhhCCCCCCCCCCCCCCCCCccccccchhHhHhhhccCccchhhh
Q psy14515 236 DADYMAVFHQVLLPMVAEGGYCLKSLAEGAALTLRALLDDPCPNFETLGTPSERPKIWKEGKQCLVLALKHIVPQNSILS 315 (586)
Q Consensus 236 D~DYlaif~~vl~p~aleggy~~~sl~~~~~~t~~~llGdp~p~~~~~~~p~~~p~~w~~~r~~~~~~~~h~~~~~~i~~ 315 (586)
T Consensus 269 -------------------------------------------------------------------------------- 268 (362)
T 3men_A 269 -------------------------------------------------------------------------------- 268 (362)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhhhhhhhhccCCCCCCCCccccccccCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEEcCCcCCC
Q psy14515 316 NLDRASRRFKLLTFVHLPAENTDVPLLFLLQIPGCYPHRTKSKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACV 395 (586)
Q Consensus 316 ~~~~~~~r~a~~~~~hs~~~~~d~~~~f~~~i~~~~p~~~~~~g~gd~~yl~a~~~ivlPi~~~f~PdlVlvsaGfDa~~ 395 (586)
.|++|.+|+.+|+.+ +|++++|+||+||||||||++.
T Consensus 269 ------------------------------------------~g~~d~~yl~~~~~~-l~~l~~f~PdlIvvsaG~Da~~ 305 (362)
T 3men_A 269 ------------------------------------------HGSSEAAFFERVDDA-LRELRRFAPDALVLSLGFDVYR 305 (362)
T ss_dssp ------------------------------------------TTBCHHHHHHHHHHH-HHHHHHHCCSEEEEEECSTTBT
T ss_pred ------------------------------------------CCCChHHHHHHHHHH-HHHHHhcCCCEEEEECcccCcC
Confidence 378899999999885 5889999999999999999999
Q ss_pred CCcCcccccCHHHHHHHHHHHHHhcCCcEEEEcCCCCCcchHHHHHHHHHHHHcC
Q psy14515 396 NDPLGGCKVSPEAYAHFTHWLKALAQGRIILALEGGYNISSISYAMTLCTKALLG 450 (586)
Q Consensus 396 ~DplG~~~vt~~~y~~~t~~L~~la~grvv~vLEGGYn~~~ia~~~~~~~~~Llg 450 (586)
+||||+++||+++|.+++++|++++ +|++++|||||+++++++|+.+++++|.|
T Consensus 306 ~Dplg~l~lt~~~~~~~~~~l~~~~-~~~v~vleGGY~~~~l~~~~~a~l~~l~~ 359 (362)
T 3men_A 306 DDPQSQVAVTTDGFGRLGHLIGALR-LPTVIVQEGGYHIESLEANARSFFGGFGA 359 (362)
T ss_dssp TCTTCCBCBCHHHHHHHHHHHHTTC-CCEEEEECCCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCccCCHHHHHHHHHHHHhhC-CCEEEEECCCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999986 89999999999999999999999999986
No 10
>2pqp_A HD7A, histone deacetylase 7A; HDAC, structural genomics, structural genomics consortium, SGC; HET: TSN; 1.80A {Homo sapiens} PDB: 2pqo_A* 2nvr_A 3c0y_A 3c0z_A 3c10_A* 2vqm_A* 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A*
Probab=97.62 E-value=3.7e-05 Score=82.62 Aligned_cols=65 Identities=28% Similarity=0.517 Sum_probs=52.1
Q ss_pred cccCCccceeeecCCCCCCCchHHHHHHHHhhhhhh--------------------------------------------
Q psy14515 216 GEGIGKGYNFNIPLNKTHMKDADYMAVFHQVLLPMV-------------------------------------------- 251 (586)
Q Consensus 216 G~g~G~G~nvNVPl~~~g~~D~DYlaif~~vl~p~a-------------------------------------------- 251 (586)
|.|--...-++..++ .+++|++|+.+|+.+++|++
T Consensus 270 g~g~~vNvPl~~gl~-~g~~d~~yl~~~~~~l~p~~~~F~PdlIvvsaG~Da~~gD~dpLg~~~lt~~~y~~~~~~l~~~ 348 (421)
T 2pqp_A 270 GEGFNVNVAWAGGLD-PPMGDPEYLAAFRIVVMPIAREFSPDLVLVSAGFDAAEGHPAPLGGYHVSAKCFGYMTQQLMNL 348 (421)
T ss_dssp GTTCEEEEEECSCSS-SCCBHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBTTCCGGGCCCBBCHHHHHHHHHHHTTS
T ss_pred CccceeccccCCCCC-CCCCHHHHHHHHHHHHHHHHHHhCCCEEEEeCCcccccccccccCCceeCHHHHHHHHHHHHHH
Confidence 334334444555554 57899999999999998885
Q ss_pred --------hcCCccccchhhhHHHHHHhhhCCCCCCCC
Q psy14515 252 --------AEGGYCLKSLAEGAALTLRALLDDPCPNFE 281 (586)
Q Consensus 252 --------leggy~~~sl~~~~~~t~~~llGdp~p~~~ 281 (586)
|||||++.+|++++++++++|+|++.+.++
T Consensus 349 a~grvv~vlEGGY~l~~l~~~~~a~~~~L~g~~~~~l~ 386 (421)
T 2pqp_A 349 AGGAVVLALEGGHDLTAICDASEACVAALLGNRVDPLS 386 (421)
T ss_dssp GGGCEEEEECSCCCHHHHHHHHHHHHHHHTTCCCCGGG
T ss_pred cCCCEEEEECCCCChHHHHHHHHHHHHHHcCCCCCCCc
Confidence 999999999999999999999999877543
No 11
>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A*
Probab=96.91 E-value=0.00071 Score=72.67 Aligned_cols=63 Identities=30% Similarity=0.537 Sum_probs=55.0
Q ss_pred cccCCccceeeecCCCCCCCchHHHHHHHHhhhhhh--------------------------------------------
Q psy14515 216 GEGIGKGYNFNIPLNKTHMKDADYMAVFHQVLLPMV-------------------------------------------- 251 (586)
Q Consensus 216 G~g~G~G~nvNVPl~~~g~~D~DYlaif~~vl~p~a-------------------------------------------- 251 (586)
|.|--...-++.+++ .+++|++|+.+|+.+++|++
T Consensus 241 g~g~~~n~pl~~g~~-~~~~D~~y~~~~~~~v~p~~~~f~PdlivvsaG~Da~~~d~D~lg~~~lt~~~~~~~~~~l~~~ 319 (413)
T 2vqm_A 241 GVGFNVNMAFTGGLD-PPMGDAEYLAAFRTVVMPIASEFAPDVVLVSSGFDAVEGHPTPLGGYNLSARCFGYLTKQLMGL 319 (413)
T ss_dssp GTTCEEEEEECSCSS-SCCCHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBSSCTTTTCCCCBCHHHHHHHHHHHHTS
T ss_pred ccccccccccccccC-CCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeCChhhcCCCCCCCCCcccCHHHHHHHHHHHHHh
Confidence 555566677888886 68999999999999999986
Q ss_pred --------hcCCccccchhhhHHHHHHhhhCCCCCC
Q psy14515 252 --------AEGGYCLKSLAEGAALTLRALLDDPCPN 279 (586)
Q Consensus 252 --------leggy~~~sl~~~~~~t~~~llGdp~p~ 279 (586)
+||||++++++.++...+++|+|++.+.
T Consensus 320 a~~~~v~vleGGY~~~~l~~~~~~~~~~l~g~~~~~ 355 (413)
T 2vqm_A 320 AGGRIVLALEGGHDLTAICDASEACVSALLGNELDP 355 (413)
T ss_dssp GGGCEEEEECCCCCHHHHHHHHHHHHHHHTTCCCCC
T ss_pred cCCCEEEEeCcCCChHHHHHHHHHHHHHHcCCCCCC
Confidence 8999999999999999999999987643
No 12
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A*
Probab=95.47 E-value=0.0088 Score=63.43 Aligned_cols=28 Identities=29% Similarity=0.366 Sum_probs=26.2
Q ss_pred hcCCccccchhhhHHHHHHhhhCCCCCC
Q psy14515 252 AEGGYCLKSLAEGAALTLRALLDDPCPN 279 (586)
Q Consensus 252 leggy~~~sl~~~~~~t~~~llGdp~p~ 279 (586)
+||||+..+++.+++..+++|+|++.|.
T Consensus 293 leGGY~~~~l~~~~~~~~~~l~g~~~~~ 320 (375)
T 1c3p_A 293 GGGGYHPYALARAWTLIWCELSGREVPE 320 (375)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHTCCCCS
T ss_pred ECCCCChHHHHHHHHHHHHHHcCCCCCc
Confidence 8999999999999999999999998763
No 13
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A*
Probab=95.26 E-value=0.062 Score=57.24 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=25.7
Q ss_pred hcCCccccchhhhHHHHHHhhhCCCCCC
Q psy14515 252 AEGGYCLKSLAEGAALTLRALLDDPCPN 279 (586)
Q Consensus 252 leggy~~~sl~~~~~~t~~~llGdp~p~ 279 (586)
+||||+.++++.+.+.....++|.+.|.
T Consensus 302 ~gGGY~~~~var~w~~~~~~l~g~~l~~ 329 (388)
T 3ew8_A 302 GGGGYNLANTARCWTYLTGVILGKTLSS 329 (388)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHTCCCCS
T ss_pred ECCCCChhHHHHHHHHHHHHHcCCCCCC
Confidence 6899999999999999999999998763
No 14
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens}
Probab=94.54 E-value=0.11 Score=55.03 Aligned_cols=28 Identities=18% Similarity=0.407 Sum_probs=25.4
Q ss_pred hcCCccccchhhhHHHHHHhhhCCCCCC
Q psy14515 252 AEGGYCLKSLAEGAALTLRALLDDPCPN 279 (586)
Q Consensus 252 leggy~~~sl~~~~~~t~~~llGdp~p~ 279 (586)
+||||+.++++.+.+.....++|.+.|.
T Consensus 294 ~eGGY~~~~var~w~~~~a~l~g~~~~~ 321 (376)
T 4a69_A 294 GGGGYTVRNVARCWTYETSLLVEEAISE 321 (376)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHTTCCCCS
T ss_pred ECCCCChhHHHHHHHHHHHHhcCCCccC
Confidence 7999999999999999999999998763
No 15
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A*
Probab=94.05 E-value=0.033 Score=58.93 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=24.6
Q ss_pred hcCCccccchhhhHHHHHHhhhCCCC
Q psy14515 252 AEGGYCLKSLAEGAALTLRALLDDPC 277 (586)
Q Consensus 252 leggy~~~sl~~~~~~t~~~llGdp~ 277 (586)
+||||+.++++.++...+++|+|.+.
T Consensus 308 leGGY~~~~l~~~~~~~~~~l~g~~~ 333 (369)
T 1zz1_A 308 QEGGYSPHYLPFCGLAVIEELTGVRS 333 (369)
T ss_dssp ECCCCCTTTHHHHHHHHHHHHHCCCC
T ss_pred ECCCCCccHHHHHHHHHHHHHhCCCC
Confidence 89999999999999999999999864
No 16
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens}
Probab=93.33 E-value=0.25 Score=52.26 Aligned_cols=28 Identities=29% Similarity=0.458 Sum_probs=25.5
Q ss_pred hcCCccccchhhhHHHHHHhhhCCCCCC
Q psy14515 252 AEGGYCLKSLAEGAALTLRALLDDPCPN 279 (586)
Q Consensus 252 leggy~~~sl~~~~~~t~~~llGdp~p~ 279 (586)
+||||+.++++.+.+.-..+++|.+.|.
T Consensus 293 ~eGGY~~~~var~wt~~ta~~~~~~i~~ 320 (367)
T 3max_A 293 GGGGYTIRNVARCWTYETAVALDCEIPN 320 (367)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHTTCCCCS
T ss_pred eCCCCChhHHHHHHHHHHHHHhhccccc
Confidence 8999999999999999999999998763
No 17
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A*
Probab=91.97 E-value=0.096 Score=54.88 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=21.4
Q ss_pred hcCCccccchhhhHHHHHHhhhC
Q psy14515 252 AEGGYCLKSLAEGAALTLRALLD 274 (586)
Q Consensus 252 leggy~~~sl~~~~~~t~~~llG 274 (586)
+||||+.++|++++..+++.|.|
T Consensus 319 leGGY~~~~l~~~~~~~l~g~~~ 341 (341)
T 3q9b_A 319 MEGGYGVPEIGLNVANVLKGVAG 341 (341)
T ss_dssp ECCCCCCTTHHHHHHHHHHHHHC
T ss_pred ECCCCChHHHHHHHHHHHHHhcC
Confidence 99999999999999999998864
No 18
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B}
Probab=91.44 E-value=0.1 Score=55.14 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=21.9
Q ss_pred hcCCccccchhhhHHHHHHhhhC
Q psy14515 252 AEGGYCLKSLAEGAALTLRALLD 274 (586)
Q Consensus 252 leggy~~~sl~~~~~~t~~~llG 274 (586)
+||||+.++|++++..++++|.|
T Consensus 337 leGGY~~~~l~~~~~a~l~~l~~ 359 (362)
T 3men_A 337 QEGGYHIESLEANARSFFGGFGA 359 (362)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHTC
T ss_pred ECCCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999876
No 19
>4hf7_A Putative acylhydrolase; PF13472 family, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: OSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=49.40 E-value=18 Score=33.43 Aligned_cols=33 Identities=24% Similarity=0.575 Sum_probs=21.5
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCCCEEEEEcCC-cCCC
Q psy14515 359 GMSDPEYIAAFQQVILPIAYQFNPELVLVSAGY-DACV 395 (586)
Q Consensus 359 g~gd~~yl~a~~~ivlPi~~~f~PdlVlvsaGf-Da~~ 395 (586)
|..-.+.+.-|.+.| -.++||+|+|..|. |...
T Consensus 60 G~tt~~~l~r~~~~v----~~~~Pd~vvi~~G~ND~~~ 93 (209)
T 4hf7_A 60 GQTSYQFLLRFREDV----INLSPALVVINAGTNDVAE 93 (209)
T ss_dssp TCCHHHHHHHHHHHT----GGGCCSEEEECCCHHHHTT
T ss_pred cccHHHHHHHHHHHH----HhcCCCEEEEEeCCCcCcc
Confidence 444455555555543 35799999999997 4443
No 20
>1yzf_A Lipase/acylhydrolase; structural GENO PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.90A {Enterococcus faecalis} SCOP: c.23.10.5
Probab=42.32 E-value=74 Score=27.82 Aligned_cols=61 Identities=10% Similarity=0.227 Sum_probs=34.3
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCCCEEEEEcCCcCCCCCcCcccccCHHHHHH-HHHHHHHhcCCcEEEE
Q psy14515 359 GMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAH-FTHWLKALAQGRIILA 427 (586)
Q Consensus 359 g~gd~~yl~a~~~ivlPi~~~f~PdlVlvsaGfDa~~~DplG~~~vt~~~y~~-~t~~L~~la~grvv~v 427 (586)
|..-.+.+.-+... +...+||+|+|+.|..=.. ....++++.|.. +..++..+-+.+++++
T Consensus 49 G~~~~~~~~~~~~~----~~~~~pd~vvi~~G~ND~~----~~~~~~~~~~~~~l~~~i~~~~~~~vi~~ 110 (195)
T 1yzf_A 49 GDTTEDGLKRLNKE----VLIEKPDEVVIFFGANDAS----LDRNITVATFRENLETMIHEIGSEKVILI 110 (195)
T ss_dssp TCCHHHHHHHHHHH----TGGGCCSEEEEECCTTTTC----TTSCCCHHHHHHHHHHHHHHHCGGGEEEE
T ss_pred CCCHHHHHHHHHHh----hhhcCCCEEEEEeeccccC----ccCCCCHHHHHHHHHHHHHHhcCCEEEEE
Confidence 55555555555443 3458999999999974332 122456666543 4444444443344443
No 21
>2vpt_A Lipolytic enzyme; esterase, hydrolase; 1.40A {Clostridium thermocellum}
Probab=41.07 E-value=42 Score=30.84 Aligned_cols=60 Identities=12% Similarity=0.238 Sum_probs=38.2
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCCCEEEEEcCCcCCCCCcCcccccCHHHHHHHHHHHHHhcCCcEEE
Q psy14515 359 GMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALAQGRIIL 426 (586)
Q Consensus 359 g~gd~~yl~a~~~ivlPi~~~f~PdlVlvsaGfDa~~~DplG~~~vt~~~y~~~t~~L~~la~grvv~ 426 (586)
|..-.+.+.-+...+ ..++||+|+|..|..=. ..+...+.+.|..|...+++...+..++
T Consensus 65 G~~~~~~~~~l~~~l----~~~~pd~vvi~~G~ND~----~~~~~~~~~~l~~li~~i~~~~p~~~ii 124 (215)
T 2vpt_A 65 GWTIPQIASNINNWL----NTHNPDVVFLWIGGNDL----LLNGNLNATGLSNLIDQIFTVKPNVTLF 124 (215)
T ss_dssp TCCHHHHHHHHHHHH----HHHCCSEEEEECCHHHH----HHHCCCCHHHHHHHHHHHHHHCTTCEEE
T ss_pred chhHHHHHHHHHHHh----hccCCCEEEEEcccccc----CCCCChhHHHHHHHHHHHHHhCCCCEEE
Confidence 444455665555433 46799999999996422 2222345788999999998875443333
No 22
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=35.66 E-value=25 Score=32.72 Aligned_cols=20 Identities=15% Similarity=0.170 Sum_probs=14.4
Q ss_pred HhhCCCCeEEEEecccccCccc
Q psy14515 159 LDNTSVSRVLIVDWDVHHGQAT 180 (586)
Q Consensus 159 l~~~g~~RVlIVD~DVHHGNGT 180 (586)
+.+.| +||++||+|.+ ||=+
T Consensus 24 la~~g-~~VlliD~D~~-~~l~ 43 (254)
T 3kjh_A 24 MASDY-DKIYAVDGDPD-SCLG 43 (254)
T ss_dssp HTTTC-SCEEEEEECTT-SCHH
T ss_pred HHHCC-CeEEEEeCCCC-cChH
Confidence 33445 89999999995 5533
No 23
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=33.85 E-value=30 Score=32.24 Aligned_cols=16 Identities=31% Similarity=0.409 Sum_probs=13.6
Q ss_pred CeEEEEecccccCccc
Q psy14515 165 SRVLIVDWDVHHGQAT 180 (586)
Q Consensus 165 ~RVlIVD~DVHHGNGT 180 (586)
+||++||+|..+||=+
T Consensus 32 ~~VlliD~D~~~~~l~ 47 (237)
T 1g3q_A 32 RKVLAVDGDLTMANLS 47 (237)
T ss_dssp CCEEEEECCTTSCCHH
T ss_pred CeEEEEeCCCCCCChh
Confidence 6999999999887644
No 24
>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo structural genomics, joint center for structural genomics; HET: MSE PG4; 1.93A {Parabacteroides distasonis}
Probab=33.70 E-value=39 Score=30.18 Aligned_cols=30 Identities=27% Similarity=0.542 Sum_probs=20.3
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCCCEEEEEcCCc
Q psy14515 359 GMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYD 392 (586)
Q Consensus 359 g~gd~~yl~a~~~ivlPi~~~f~PdlVlvsaGfD 392 (586)
|..-.+.+..+... +..++||+|+|..|..
T Consensus 56 G~~~~~~~~~~~~~----~~~~~pd~vvi~~G~N 85 (204)
T 3p94_A 56 GQTTSEMLVRFRQD----VINLKPKAVVILAGIN 85 (204)
T ss_dssp TCCHHHHHHHHHHH----TGGGCEEEEEEECCHH
T ss_pred cccHHHHHHHHHHH----HHhCCCCEEEEEeecC
Confidence 44555555555443 3458999999999974
No 25
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=33.08 E-value=38 Score=31.63 Aligned_cols=18 Identities=28% Similarity=0.305 Sum_probs=14.8
Q ss_pred CeEEEEecccccCcccee
Q psy14515 165 SRVLIVDWDVHHGQATQQ 182 (586)
Q Consensus 165 ~RVlIVD~DVHHGNGTQ~ 182 (586)
+||++||+|..+||=+..
T Consensus 35 ~~VlliD~D~~~~~l~~~ 52 (245)
T 3ea0_A 35 IHVLAVDISLPFGDLDMY 52 (245)
T ss_dssp CCEEEEECCTTTCCGGGG
T ss_pred CCEEEEECCCCCCCHHHH
Confidence 799999999988765544
No 26
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=33.05 E-value=58 Score=28.67 Aligned_cols=31 Identities=19% Similarity=0.385 Sum_probs=21.5
Q ss_pred CCCChHHHHHHHHHHHHHHHHhcCCCEEEEEcCCc
Q psy14515 358 KGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYD 392 (586)
Q Consensus 358 ~g~gd~~yl~a~~~ivlPi~~~f~PdlVlvsaGfD 392 (586)
.|....+.+..+.. .+.+++||+|+|..|..
T Consensus 47 ~G~~~~~~~~~~~~----~~~~~~pd~vvi~~G~N 77 (185)
T 3hp4_A 47 SGETSGGALRRLDA----LLEQYEPTHVLIELGAN 77 (185)
T ss_dssp TTCCHHHHHHHHHH----HHHHHCCSEEEEECCHH
T ss_pred CCccHHHHHHHHHH----HHhhcCCCEEEEEeecc
Confidence 35555566665555 34567999999999963
No 27
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=32.30 E-value=33 Score=32.68 Aligned_cols=16 Identities=31% Similarity=0.339 Sum_probs=13.6
Q ss_pred CeEEEEecccccCccc
Q psy14515 165 SRVLIVDWDVHHGQAT 180 (586)
Q Consensus 165 ~RVlIVD~DVHHGNGT 180 (586)
+||++||+|.+.||=+
T Consensus 32 ~~VlliD~D~~~~~l~ 47 (263)
T 1hyq_A 32 HDVTIVDADITMANLE 47 (263)
T ss_dssp CCEEEEECCCSSSSHH
T ss_pred CcEEEEECCCCCCCcc
Confidence 6999999999887644
No 28
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=32.20 E-value=33 Score=32.38 Aligned_cols=17 Identities=6% Similarity=0.305 Sum_probs=13.7
Q ss_pred CeEEEEecccccCccce
Q psy14515 165 SRVLIVDWDVHHGQATQ 181 (586)
Q Consensus 165 ~RVlIVD~DVHHGNGTQ 181 (586)
+||++||+|..+||=+.
T Consensus 32 ~~VlliD~D~~~~~~~~ 48 (260)
T 3q9l_A 32 KKTVVIDFAIGLRNLDL 48 (260)
T ss_dssp CCEEEEECCCSSCCHHH
T ss_pred CcEEEEECCCCCCChhH
Confidence 69999999998776443
No 29
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=31.82 E-value=31 Score=32.94 Aligned_cols=23 Identities=13% Similarity=0.293 Sum_probs=16.3
Q ss_pred hCCCCeEEEEecccccCccceeccc
Q psy14515 161 NTSVSRVLIVDWDVHHGQATQQMFY 185 (586)
Q Consensus 161 ~~g~~RVlIVD~DVHHGNGTQ~iFy 185 (586)
+.| +||++||+|. +|+.+...+.
T Consensus 27 ~~G-~~VlliD~D~-q~~~~~~~~~ 49 (269)
T 1cp2_A 27 AMG-KTIMVVGCDP-KADSTRLLLG 49 (269)
T ss_dssp TTT-CCEEEEEECT-TSCSSHHHHT
T ss_pred HCC-CcEEEEcCCC-CCCHHHHhcC
Confidence 334 6999999996 4666665553
No 30
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=27.96 E-value=1.3e+02 Score=27.00 Aligned_cols=51 Identities=14% Similarity=0.306 Sum_probs=30.8
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCCCEEEEEcCCcCCCCCcCcccccCHHHHH----HHHHHHHHhcC
Q psy14515 359 GMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYA----HFTHWLKALAQ 421 (586)
Q Consensus 359 g~gd~~yl~a~~~ivlPi~~~f~PdlVlvsaGfDa~~~DplG~~~vt~~~y~----~~t~~L~~la~ 421 (586)
+.+....+..+.. .+...+||+|+|..|.. | ..++++.|. .|...++....
T Consensus 56 ~~~~~~~~~~~~~----~~~~~~pd~Vvi~~G~N----D----~~~~~~~~~~~l~~ii~~l~~~~p 110 (200)
T 4h08_A 56 SVGDPALIEELAV----VLKNTKFDVIHFNNGLH----G----FDYTEEEYDKSFPKLIKIIRKYAP 110 (200)
T ss_dssp CTTCHHHHHHHHH----HHHHSCCSEEEECCCSS----C----TTSCHHHHHHHHHHHHHHHHHHCT
T ss_pred CccHHHHHHHHHH----HHhcCCCCeEEEEeeeC----C----CCCCHHHHHHHHHHHHHHHhhhCC
Confidence 4445555554443 44678999999999965 3 235666554 45555555543
No 31
>3dff_A Teicoplanin pseudoaglycone deacetylases ORF2; lipoglycopeptide, zinc dependen hydrolase; HET: MSE PG4; 1.60A {Actinoplanes teichomyceticus} PDB: 2x9l_A* 3dfk_A* 3dfm_A 2xad_A*
Probab=27.49 E-value=62 Score=32.12 Aligned_cols=34 Identities=21% Similarity=0.343 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEcCCcCCCC
Q psy14515 363 PEYIAAFQQVILPIAYQFNPELVLVSAGYDACVN 396 (586)
Q Consensus 363 ~~yl~a~~~ivlPi~~~f~PdlVlvsaGfDa~~~ 396 (586)
..+...+...|.-++++|+||+||.-.|.|.|.+
T Consensus 130 ~~~~~~l~~~l~~~ir~~~PdvV~t~~~~d~HpD 163 (273)
T 3dff_A 130 HDLVGEVADDIRSIIDEFDPTLVVTCAAIGEHPD 163 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSEEEEECCTTCCHH
T ss_pred cchHHHHHHHHHHHHHHcCCCEEEECCCCCCChH
Confidence 3466778888889999999999999877776554
No 32
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=27.43 E-value=32 Score=35.24 Aligned_cols=20 Identities=50% Similarity=0.531 Sum_probs=16.5
Q ss_pred CeEEEEecccccCccceeccc
Q psy14515 165 SRVLIVDWDVHHGQATQQMFY 185 (586)
Q Consensus 165 ~RVlIVD~DVHHGNGTQ~iFy 185 (586)
+||++||+|.. ||.+..++.
T Consensus 31 ~rVLlID~D~q-~~~~~~l~~ 50 (361)
T 3pg5_A 31 KRVLYVDCDPQ-CNATQLMLT 50 (361)
T ss_dssp CCEEEEECCTT-CTTHHHHSC
T ss_pred CcEEEEEcCCC-CChhhhhcC
Confidence 79999999977 788777654
No 33
>3dci_A Arylesterase; SGNH_hydrolase SUBF structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Agrobacterium tumefaciens str}
Probab=27.02 E-value=90 Score=28.95 Aligned_cols=41 Identities=17% Similarity=0.157 Sum_probs=25.1
Q ss_pred HHHHhcCC-CEEEEEcCCcCCCCCcCcccccCHHHHH----HHHHHHHHh
Q psy14515 375 PIAYQFNP-ELVLVSAGYDACVNDPLGGCKVSPEAYA----HFTHWLKAL 419 (586)
Q Consensus 375 Pi~~~f~P-dlVlvsaGfDa~~~DplG~~~vt~~~y~----~~t~~L~~l 419 (586)
..+..++| |+|+|..|.+ |-.....++++.|. .|...+++.
T Consensus 94 ~~l~~~~p~d~VvI~~GtN----D~~~~~~~~~~~~~~~l~~li~~ir~~ 139 (232)
T 3dci_A 94 VALSCHMPLDLVIIMLGTN----DIKPVHGGRAEAAVSGMRRLAQIVETF 139 (232)
T ss_dssp HHHHHHCSCSEEEEECCTT----TTSGGGTSSHHHHHHHHHHHHHHHHHC
T ss_pred HHHhhCCCCCEEEEEeccC----CCccccCCCHHHHHHHHHHHHHHHHHh
Confidence 44567899 9999999964 43333334555544 445555554
No 34
>3dfi_A Pseudoaglycone deacetylase DBV21; single alpha-beta domain, hydrolase; 2.10A {Actinoplanes teichomyceticus}
Probab=26.74 E-value=68 Score=31.70 Aligned_cols=36 Identities=19% Similarity=0.328 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCEEEEEcCCcCCCCC
Q psy14515 362 DPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVND 397 (586)
Q Consensus 362 d~~yl~a~~~ivlPi~~~f~PdlVlvsaGfDa~~~D 397 (586)
+..+...+...|..++++|+||+||.-.|.|.|.+.
T Consensus 126 ~~~~~~~~~~~l~~~ir~~~PdvV~t~~~~d~HpDH 161 (270)
T 3dfi_A 126 NHDLVAAIREDIESMIAECDPTLVLTCVAIGKHPDH 161 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSEEEEECCTTCCHHH
T ss_pred ccchHHHHHHHHHHHHHHcCCCEEEeCCCCCCChhH
Confidence 334566788888899999999999998777766553
No 35
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=25.27 E-value=45 Score=32.62 Aligned_cols=17 Identities=18% Similarity=0.524 Sum_probs=13.7
Q ss_pred CeEEEEecccccCccce
Q psy14515 165 SRVLIVDWDVHHGQATQ 181 (586)
Q Consensus 165 ~RVlIVD~DVHHGNGTQ 181 (586)
+||++||+|..+|+-+.
T Consensus 34 ~~VlliD~D~~q~~l~~ 50 (286)
T 2xj4_A 34 AKVAVIDLDLRQRTSAR 50 (286)
T ss_dssp CCEEEEECCTTTCHHHH
T ss_pred CcEEEEECCCCCCCHHH
Confidence 69999999997766543
No 36
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=24.31 E-value=2.5e+02 Score=27.83 Aligned_cols=60 Identities=23% Similarity=0.361 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEcCCcCCCCCcCcccccCHHHHHHHHHHHHHhcC--CcEEEEcCCC
Q psy14515 363 PEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKALAQ--GRIILALEGG 431 (586)
Q Consensus 363 ~~yl~a~~~ivlPi~~~f~PdlVlvsaGfDa~~~DplG~~~vt~~~y~~~t~~L~~la~--grvv~vLEGG 431 (586)
.++..+|..++ -.+.+.+||+||++- |-.-.-.-+++.+..+...|..+.. .+++++ -|-
T Consensus 23 ~~~~~~~~~~~-~~~~~~~~D~vl~~G-------Dl~d~~~~~~~~~~~~~~~l~~l~~~~~~v~~v-~GN 84 (333)
T 1ii7_A 23 EEFAEAFKNAL-EIAVQENVDFILIAG-------DLFHSSRPSPGTLKKAIALLQIPKEHSIPVFAI-EGN 84 (333)
T ss_dssp HHHHHHHHHHH-HHHHHTTCSEEEEES-------CSBSSSSCCHHHHHHHHHHHHHHHTTTCCEEEE-CCT
T ss_pred HHHHHHHHHHH-HHHHhcCCCEEEECC-------CcCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEe-CCc
Confidence 35667777655 466788999988853 3222222355667777777877753 355554 443
No 37
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=23.76 E-value=2.2e+02 Score=25.04 Aligned_cols=30 Identities=27% Similarity=0.385 Sum_probs=19.4
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCCCEEEEEcCCc
Q psy14515 359 GMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYD 392 (586)
Q Consensus 359 g~gd~~yl~a~~~ivlPi~~~f~PdlVlvsaGfD 392 (586)
|..-.+.+.-+. ..+..++||+|+|..|..
T Consensus 44 G~~~~~~~~~~~----~~~~~~~pd~Vii~~G~N 73 (190)
T 1ivn_A 44 GDTSQQGLARLP----ALLKQHQPRWVLVELGGN 73 (190)
T ss_dssp TCCHHHHHHHHH----HHHHHHCCSEEEEECCTT
T ss_pred CchHHHHHHHHH----HHHHhcCCCEEEEEeecc
Confidence 333344554444 344567999999999964
No 38
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=23.02 E-value=57 Score=32.41 Aligned_cols=14 Identities=43% Similarity=0.814 Sum_probs=12.2
Q ss_pred CeEEEEecccccCc
Q psy14515 165 SRVLIVDWDVHHGQ 178 (586)
Q Consensus 165 ~RVlIVD~DVHHGN 178 (586)
+||++||.|...++
T Consensus 122 ~rVLLID~D~~~~~ 135 (286)
T 3la6_A 122 KRVLLIDCDMRKGY 135 (286)
T ss_dssp CCEEEEECCTTTCC
T ss_pred CCEEEEeccCCCCC
Confidence 79999999998754
No 39
>3bzw_A Putative lipase; protein structure initiative II, (PSI-II), NYSGXRC, structural genomics; 1.87A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.23.10.9
Probab=22.87 E-value=1.5e+02 Score=28.38 Aligned_cols=41 Identities=17% Similarity=0.104 Sum_probs=24.3
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCCCEEEEEcCC-cCCCCCcCcc
Q psy14515 359 GMSDPEYIAAFQQVILPIAYQFNPELVLVSAGY-DACVNDPLGG 401 (586)
Q Consensus 359 g~gd~~yl~a~~~ivlPi~~~f~PdlVlvsaGf-Da~~~DplG~ 401 (586)
|..-.+.+..|..+ +.. ...+||+|+|..|. |...+.|++.
T Consensus 68 G~tt~~~~~~~~~~-l~~-~~~~pd~V~I~~G~ND~~~~~~~~~ 109 (274)
T 3bzw_A 68 GRQWDDVPRQAEKL-KKE-HGGEVDAILVFMGTNDYNSSVPIGE 109 (274)
T ss_dssp TCCGGGHHHHHHHH-HHH-HTTTCCEEEEECCHHHHHTTCCCCC
T ss_pred CCCHHHHHHHHHHH-Hhc-cCCCCCEEEEEEecccCcccCCCcc
Confidence 33333455556552 221 23789999999997 5555556553
No 40
>2q0q_A ARYL esterase; SGNH hydrolase, oligomeric enzyme, acyl transfer, ARYL ester hydrolase; 1.50A {Mycobacterium smegmatis} PDB: 2q0s_A*
Probab=22.04 E-value=1.9e+02 Score=25.88 Aligned_cols=41 Identities=12% Similarity=0.135 Sum_probs=23.7
Q ss_pred HHHHhcCC-CEEEEEcCCcCCCCCcCcccccCHHHH----HHHHHHHHHh
Q psy14515 375 PIAYQFNP-ELVLVSAGYDACVNDPLGGCKVSPEAY----AHFTHWLKAL 419 (586)
Q Consensus 375 Pi~~~f~P-dlVlvsaGfDa~~~DplG~~~vt~~~y----~~~t~~L~~l 419 (586)
..+..++| |+|+|..|..= -.....++++.| ..+...+++.
T Consensus 76 ~~l~~~~p~d~vvi~~G~ND----~~~~~~~~~~~~~~~l~~li~~~~~~ 121 (216)
T 2q0q_A 76 SCLATHLPLDLVIIMLGTND----TKAYFRRTPLDIALGMSVLVTQVLTS 121 (216)
T ss_dssp HHHHHHCSCSEEEEECCTGG----GSGGGCCCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHhCCCCCEEEEEecCcc----cchhcCCCHHHHHHHHHHHHHHHHHh
Confidence 34456788 99999999742 222234555554 3444444443
No 41
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for structural genomics, MCSG, H; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=21.57 E-value=31 Score=30.94 Aligned_cols=29 Identities=14% Similarity=0.282 Sum_probs=19.1
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCCCEEEEEcCC
Q psy14515 359 GMSDPEYIAAFQQVILPIAYQFNPELVLVSAGY 391 (586)
Q Consensus 359 g~gd~~yl~a~~~ivlPi~~~f~PdlVlvsaGf 391 (586)
|..-.+++..+.. .+...+||+|+|..|.
T Consensus 65 G~~~~~~~~~~~~----~~~~~~pd~vvi~~G~ 93 (216)
T 3rjt_A 65 GNTVADVARRWED----DVMALQPDYVSLMIGV 93 (216)
T ss_dssp TCCHHHHHHHHHH----HTGGGCCSEEEEECCH
T ss_pred CccHHHHHHHHHh----HHhhcCCCEEEEEeec
Confidence 4444455544433 3456799999999996
No 42
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=21.00 E-value=62 Score=30.91 Aligned_cols=15 Identities=60% Similarity=0.860 Sum_probs=12.3
Q ss_pred CeEEEEecccccCccc
Q psy14515 165 SRVLIVDWDVHHGQAT 180 (586)
Q Consensus 165 ~RVlIVD~DVHHGNGT 180 (586)
+||++||+|. +||-+
T Consensus 36 ~~VlliD~D~-~~~~~ 50 (257)
T 1wcv_1 36 KRVLLVDLDP-QGNAT 50 (257)
T ss_dssp CCEEEEECCT-TCHHH
T ss_pred CCEEEEECCC-CcCHH
Confidence 7999999998 47654
No 43
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=20.36 E-value=72 Score=31.30 Aligned_cols=14 Identities=36% Similarity=0.449 Sum_probs=12.2
Q ss_pred CeEEEEecccccCc
Q psy14515 165 SRVLIVDWDVHHGQ 178 (586)
Q Consensus 165 ~RVlIVD~DVHHGN 178 (586)
+||++||.|...++
T Consensus 112 ~rVLLID~D~~~~~ 125 (271)
T 3bfv_A 112 YKTLIVDGDMRKPT 125 (271)
T ss_dssp CCEEEEECCSSSCC
T ss_pred CeEEEEeCCCCCcc
Confidence 79999999997764
No 44
>1vjg_A Putative lipase from the G-D-S-L family; structural genomics center for structural genomics, JCSG, protein structure INI PSI, hydrolase; 2.01A {Nostoc SP} SCOP: c.23.10.6 PDB: 1z8h_A
Probab=20.16 E-value=1.6e+02 Score=26.63 Aligned_cols=67 Identities=15% Similarity=0.051 Sum_probs=34.5
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCCCEEEEEcCCcCCCCCcCcccccCHHH----HHHHHHHHHHhcCCcEEEEc
Q psy14515 359 GMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEA----YAHFTHWLKALAQGRIILAL 428 (586)
Q Consensus 359 g~gd~~yl~a~~~ivlPi~~~f~PdlVlvsaGfDa~~~DplG~~~vt~~~----y~~~t~~L~~la~grvv~vL 428 (586)
|..-.+.+..+..-+++.+...+||+|+|+.|..=... ..+...++++. |..+...+++. .+|+++-
T Consensus 66 G~t~~~~~~~~~~~~~~~~~~~~pd~vvi~~G~ND~~~-~~~~~~~~~~~~~~~l~~li~~l~~~--~~iil~~ 136 (218)
T 1vjg_A 66 RDTSSDIAKRWLQEVSLRLHKEYNSLVVFSFGLNDTTL-ENGKPRVSIAETIKNTREILTQAKKL--YPVLMIS 136 (218)
T ss_dssp TCCHHHHHHHHHHHHHTTCCTTSEEEEEEECCHHHHCE-ETTEESSCHHHHHHHHHHHHHHHHHH--SCEEEEC
T ss_pred CcCHHHHHHHhHHhhhhhhccCCCCEEEEEecCCcchh-hcccccCCHHHHHHHHHHHHHHHHHh--CcEEEEC
Confidence 45555565555543332222359999999999732210 00012344444 44455555554 4676664
Done!