RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14515
(586 letters)
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 386
Score = 123 bits (309), Expect = 3e-31
Identities = 87/329 (26%), Positives = 136/329 (41%), Gaps = 67/329 (20%)
Query: 7 IKDPCKELGLVQRCKFIQPREATQEEILKKHTIEQIELLATTEGSTDVDALEQLSSHYDA 66
I +E GL +C+ ++ R+A+ EE+ H+ + L T S +L+
Sbjct: 37 IWSRLQERGLRSQCECLRGRKASLEELQSVHSERHVLLYGTNPLSRLKLDNGKLAGLLAQ 96
Query: 67 IYIHPSSYKLSLLSAGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNG 126
+ + + S + +AGS +L + E+KNG
Sbjct: 97 RMFVMLPCGGVGVDTDTIW----------NELHSSNAARWAAGSVTDLAFKVASRELKNG 146
Query: 127 MAVIRPPGHHAMKSEYCGYCFFNNVALAAQHALDNTSVSRVLIVDWDVHHGQATQQMFYN 186
AV+RPPGHHA S G+CFFN+VA+A + + S++LIVDWDVHHG TQQ FY
Sbjct: 147 FAVVRPPGHHADHSTAMGFCFFNSVAIACRQLQQQSKASKILIVDWDVHHGNGTQQTFYQ 206
Query: 187 DNRVVYFSIHRYEHGTFWPNLRESEYDHIGEGIGKGYNFNIPLNKTH---MKDADYMAVF 243
D V+Y S+HR++ G F+P D +G G G+G+N N+ M D +Y+A F
Sbjct: 207 DPSVLYISLHRHDDGNFFPG--SGAVDEVGAGSGEGFNVNVAWAGGLDPPMGDPEYLAAF 264
Query: 244 HQVLLPMVA--------------------------------------------------- 252
V++P+
Sbjct: 265 RIVVMPIAREFSPDLVLVSAGFDAAEGHPAPLGGYHVSAKCFGYMTQQLMNLAGGAVVLA 324
Query: 253 -EGGYCLKSLAEGAALTLRALLDDPCPNF 280
EGG+ L ++ + + + ALL +
Sbjct: 325 LEGGHDLTAICDASEACVAALLGNRVDPL 353
Score = 109 bits (273), Expect = 1e-26
Identities = 54/127 (42%), Positives = 79/127 (62%), Gaps = 5/127 (3%)
Query: 353 HRTKSKGMSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVND--PLGGCKVSPEAYA 410
M DPEY+AAF+ V++PIA +F+P+LVLVSAG+DA PLGG VS + +
Sbjct: 248 AGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLVLVSAGFDAAEGHPAPLGGYHVSAKCFG 307
Query: 411 HFTHWLKALAQGRIILALEGGYNISSISYAMTLCTKALLGDPL-PLLESDLD--INSSAV 467
+ T L LA G ++LALEGG+++++I A C ALLG+ + PL E N +A+
Sbjct: 308 YMTQQLMNLAGGAVVLALEGGHDLTAICDASEACVAALLGNRVDPLSEEGWKQKPNLNAI 367
Query: 468 TSIKVII 474
S++ +I
Sbjct: 368 RSLEAVI 374
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 364
Score = 108 bits (271), Expect = 2e-26
Identities = 56/321 (17%), Positives = 102/321 (31%), Gaps = 80/321 (24%)
Query: 7 IKDPCKELGLVQRCKFIQPREATQEEILKKHTIEQIELLATTEGSTDVDALEQLSSHYDA 66
+ + L ++ + ++P+ A+ EE+ HT ++ L D D + + Y
Sbjct: 28 VHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSI--EYGL 85
Query: 67 IYIHPSSYKLSLLSAGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNG 126
Y P++ + + G+TI + G K
Sbjct: 86 GYDCPAT------------------------EGIFDYAAAIGGATITAAQCLIDGMCKVA 121
Query: 127 MAVIRPPGHHAMKSEYCGYCFFNNVALAAQHALDNTSVSRVLIVDWDVHHGQATQQMFYN 186
+ HHA K E G+C+ N+ L R+L VD D+HHG + F
Sbjct: 122 I-NWSGGWHHAKKDEASGFCYLNDAVLGILRLRRK--FERILYVDLDLHHGDGVEDAFSF 178
Query: 187 DNRVVYFSIHRYEHGTFWPNLRESEYDHIGEGIGKGYNFNI------------------- 227
++V+ S+H++ G F S+ +G G G+ Y+ N+
Sbjct: 179 TSKVMTVSLHKFSPGFFPGTGDVSD---VGLGKGRYYSVNVPIQDGIQDEKYYQICESVL 235
Query: 228 ------------------------PLNKTHMKDADYMAVFHQVL-----LPMVAEGGYCL 258
P+ +M +L ++ GGY L
Sbjct: 236 KEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNL 295
Query: 259 KSLAEGAALTLRALLDDPCPN 279
+ A +L +
Sbjct: 296 ANTARCWTYLTGVILGKTLSS 316
Score = 92.2 bits (228), Expect = 8e-21
Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 1/95 (1%)
Query: 360 MSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKAL 419
+ D +Y + V+ + FNP+ V++ G D DP+ ++P ++
Sbjct: 222 IQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQW 281
Query: 420 AQGRIILALEGGYNISSISYAMTLCTKALLGDPLP 454
++ GGYN+++ + T T +LG L
Sbjct: 282 Q-LATLILGGGGYNLANTARCWTYLTGVILGKTLS 315
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId:
63363]}
Length = 372
Score = 100 bits (250), Expect = 1e-23
Identities = 69/322 (21%), Positives = 111/322 (34%), Gaps = 81/322 (25%)
Query: 7 IKDPCKELGLVQRCKFIQPREATQEEILKKHTIEQIELLATTEGSTDVDALEQLSSHYDA 66
+ + L+ + I+ R AT+EE+L HT + I L E V +
Sbjct: 30 LLRFKDAMNLIDEKELIKSRPATKEELLLFHTEDYINTLMEAERCQCVP-KGAREKYNIG 88
Query: 67 IYIHPSSYKLSLLSAGSTIELRRNQKRNGSHSSSYKLSLLSAGSTIELVDNICRGEIKNG 126
Y +P SY + + S L+ GST++ ++ + N
Sbjct: 89 GYENPVSY------------------------AMFTGSSLATGSTVQAIEEFLK---GNV 121
Query: 127 MAVIRPPGHHAMKSEYCGYCFFNNVALAAQHALDNTSVSRVLIVDWDVHHGQATQQMFYN 186
HHA KS G+C+ NN A+ ++ L R+L +D D HH Q+ FY+
Sbjct: 122 AFNPAGGMHHAFKSRANGFCYINNPAVGIEY-LRKKGFKRILYIDLDAHHCDGVQEAFYD 180
Query: 187 DNRVVYFSIHRYEHGTFWPNLRESEYDHIGEGIGKGYNFNIPLNKTHMKDADYMAVFHQV 246
++ F + ++ + + + IGEG GKGYN NIPL K + D +++ +
Sbjct: 181 TDQ--VFVLSLHQSPEYAFPFEKGFLEEIGEGKGKGYNLNIPLPK-GLNDNEFLFALEKS 237
Query: 247 LLP-------------------------------------------------MVAEGGYC 257
L + GGY
Sbjct: 238 LEIVKEVFEPEVYLLQLGTDPLLEDYLSKFNLSNVAFLKAFNIVREVFGEGVYLGGGGYH 297
Query: 258 LKSLAEGAALTLRALLDDPCPN 279
+LA L L P
Sbjct: 298 PYALARAWTLIWCELSGREVPE 319
Score = 91.9 bits (227), Expect = 1e-20
Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 360 MSDPEYIAAFQQVILPIAYQFNPELVLVSAGYDACVNDPLGGCKVSPEAYAHFTHWLKAL 419
++D E++ A ++ + + F PE+ L+ G D + D L +S A+ + ++ +
Sbjct: 225 LNDNEFLFALEKSLEIVKEVFEPEVYLLQLGTDPLLEDYLSKFNLSNVAFLKAFNIVREV 284
Query: 420 AQGRIILALEGGYNISSISYAMTLCTKALLGDPLP 454
G + GGY+ +++ A TL L G +P
Sbjct: 285 F-GEGVYLGGGGYHPYALARAWTLIWCELSGREVP 318
>d1x1na1 c.1.8.1 (A:2-524) Amylomaltase MalQ {Potato (Solanum
tuberosum) [TaxId: 4113]}
Length = 523
Score = 27.8 bits (61), Expect = 4.2
Identities = 14/86 (16%), Positives = 29/86 (33%), Gaps = 4/86 (4%)
Query: 166 RVLIVDWDVHHGQATQQMFYNDNRVVYFSIHRYEHGT-FWPNLRESEYDHIGEGIGKGYN 224
VL + + N+VVY H + +W L + E ++ + +
Sbjct: 389 AVLQFAFGSDAENPHLPHNHEQNQVVYTGTHDNDTIRGWWDTLPQEEKSNVLKYLSNIEE 448
Query: 225 FNIPLNKTHMKDADYMAVFHQVLLPM 250
I + + +V ++PM
Sbjct: 449 EEISR---GLIEGAVSSVARIAIIPM 471
>d1vdra_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type
{Haloferax volcanii [TaxId: 2246]}
Length = 157
Score = 27.0 bits (59), Expect = 4.9
Identities = 9/52 (17%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 177 GQATQQMFYNDNRVVYFSIHR-YEHGTFWPNLRESEYDHIGEGIGKGYNFNI 227
+ +R+V + YE T++P +E++ E +G+
Sbjct: 102 AAIYALFQPHLDRMVLSRVPGEYEGDTYYPEWDAAEWELDAETDHEGFTLQE 153
>d1ihpa_ c.60.1.2 (A:) Phytase
(myo-inositol-hexakisphosphate-3-phosphohydrolase)
{Aspergillus ficuum [TaxId: 5058]}
Length = 438
Score = 27.5 bits (60), Expect = 5.0
Identities = 14/75 (18%), Positives = 24/75 (32%), Gaps = 1/75 (1%)
Query: 460 LDINSSAVTSIKVIIIINNNNSVYLYCSHRTENPFAFLSFLSLKNITETILNCIYEHRPY 519
D SS T N+++Y SH + L L L N T+ + E+
Sbjct: 304 HDDTSSNHTLDSSPATFPLNSTLYADFSHD-NGIISILFALGLYNGTKPLSTTTVENITQ 362
Query: 520 WNCYKFQDISTEGAH 534
+ + +
Sbjct: 363 TDGFSSAWTVPFASR 377
>d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon
Aeropyrum pernix [TaxId: 56636]}
Length = 234
Score = 26.9 bits (59), Expect = 6.1
Identities = 12/76 (15%), Positives = 23/76 (30%), Gaps = 1/76 (1%)
Query: 103 LSLLSAGSTIELVDNICRGEIKNGMA-VIRPPGHHAMKSEYCGYCFFNNVALAAQHALDN 161
+LLS +T E V N+ R G + P + S ++
Sbjct: 26 STLLSPRATEEDVRNLVREASDYGFRCAVLTPVYTVKISGLAEKLGVKLCSVIGFPLGQA 85
Query: 162 TSVSRVLIVDWDVHHG 177
+++ + G
Sbjct: 86 PLEVKLVEAQTVLEAG 101
>d1nj8a1 c.51.1.1 (A:268-393) Prolyl-tRNA synthetase (ProRS) domain
{Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]}
Length = 126
Score = 26.2 bits (57), Expect = 6.1
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 358 KGMSDPEYIAAFQQVILPIAYQFNPELVL 386
KG+ P +A Q VI+P+ ++ ++V+
Sbjct: 1 KGLILPPIVAPIQVVIVPLIFKGKEDIVM 29
>d1qwoa_ c.60.1.2 (A:) Phytase
(myo-inositol-hexakisphosphate-3-phosphohydrolase)
{Aspergillus fumigatus [TaxId: 5085]}
Length = 435
Score = 27.1 bits (59), Expect = 6.8
Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 1/75 (1%)
Query: 460 LDINSSAVTSIKVIIIINNNNSVYLYCSHRTENPFAFLSFLSLKNITETILNCIYEHRPY 519
D S+ T + N ++Y+ SH + + L L N TE + E
Sbjct: 302 QDHTSTNSTLVSNPATFPLNATMYVDFSHD-NSMVSIFFALGLYNGTEPLSRTSVESAKE 360
Query: 520 WNCYKFQDISTEGAH 534
+ Y + GA
Sbjct: 361 LDGYSASWVVPFGAR 375
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.413
Gapped
Lambda K H
0.267 0.0446 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,195,017
Number of extensions: 102998
Number of successful extensions: 223
Number of sequences better than 10.0: 1
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 16
Length of query: 586
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 496
Effective length of database: 1,171,896
Effective search space: 581260416
Effective search space used: 581260416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.7 bits)