BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14516
(76 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9UBN7|HDAC6_HUMAN Histone deacetylase 6 OS=Homo sapiens GN=HDAC6 PE=1 SV=2
Length = 1215
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 9 QALVNEEMFL-VTPLADCPHTPLVAPVPQSGVDVKAPCVDCASVAENWVCLICYQVRCGR 67
+ L ++ +F VTPL CPH V P+P +G+DV PC DC ++ ENWVCL CYQV CGR
Sbjct: 1096 RGLTDQAIFYAVTPLPWCPHLVAVCPIPAAGLDVTQPCGDCGTIQENWVCLSCYQVYCGR 1155
Query: 68 YIEEH 72
YI H
Sbjct: 1156 YINGH 1160
>sp|Q9Z2V5|HDAC6_MOUSE Histone deacetylase 6 OS=Mus musculus GN=Hdac6 PE=1 SV=3
Length = 1149
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 38/57 (66%)
Query: 16 MFLVTPLADCPHTPLVAPVPQSGVDVKAPCVDCASVAENWVCLICYQVRCGRYIEEH 72
+ VTPL+ CPH V P+P +G+DV PC C +V ENWVCL CYQV C RY+ H
Sbjct: 1038 FYAVTPLSWCPHLMAVCPIPAAGLDVSQPCKTCGTVQENWVCLTCYQVYCSRYVNAH 1094
>sp|Q20296|HDA6_CAEEL Histone deacetylase 6 OS=Caenorhabditis elegans GN=hda-6 PE=2 SV=2
Length = 955
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%)
Query: 19 VTPLADCPHTPLVAPVPQSGVDVKAPCVDCASVAENWVCLICYQVRCGRYIEEHS 73
V PLA CPH V P+P + ++ + C +C AE W CL CY+ CGR++ EH+
Sbjct: 849 VVPLATCPHLKEVKPLPPAKINARTACSECQIGAEVWTCLTCYKYNCGRFVNEHA 903
>sp|Q0V9G5|UBP44_XENTR Ubiquitin carboxyl-terminal hydrolase 44 OS=Xenopus tropicalis
GN=usp44 PE=2 SV=1
Length = 652
Score = 45.4 bits (106), Expect = 9e-05, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 19/29 (65%)
Query: 45 CVDCASVAENWVCLICYQVRCGRYIEEHS 73
CVDC + W CL C V CGRYIEEH+
Sbjct: 26 CVDCNTTESVWACLSCSHVACGRYIEEHA 54
>sp|Q6NTR6|UP44A_XENLA Ubiquitin carboxyl-terminal hydrolase 44-A OS=Xenopus laevis
GN=usp44-a PE=2 SV=1
Length = 690
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 19/29 (65%)
Query: 45 CVDCASVAENWVCLICYQVRCGRYIEEHS 73
CVDC + W CL C V CGRYIEEH+
Sbjct: 26 CVDCNTTESVWACLSCSHVACGRYIEEHA 54
>sp|D2HBJ8|UBP44_AILME Ubiquitin carboxyl-terminal hydrolase 44 OS=Ailuropoda
melanoleuca GN=USP44 PE=3 SV=1
Length = 711
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 19/29 (65%)
Query: 45 CVDCASVAENWVCLICYQVRCGRYIEEHS 73
CVDC + W CL C V CGRYIEEH+
Sbjct: 29 CVDCNTTESIWACLSCSHVACGRYIEEHA 57
>sp|Q5XGZ2|UP44B_XENLA Ubiquitin carboxyl-terminal hydrolase 44-B OS=Xenopus laevis
GN=usp44-b PE=2 SV=1
Length = 690
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 19/29 (65%)
Query: 45 CVDCASVAENWVCLICYQVRCGRYIEEHS 73
CVDC + W CL C V CGRYIEEH+
Sbjct: 26 CVDCNTTESVWACLSCSHVACGRYIEEHA 54
>sp|Q9H0E7|UBP44_HUMAN Ubiquitin carboxyl-terminal hydrolase 44 OS=Homo sapiens GN=USP44
PE=1 SV=2
Length = 712
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 20/32 (62%)
Query: 42 KAPCVDCASVAENWVCLICYQVRCGRYIEEHS 73
K CVDC + W CL C V CGRYIEEH+
Sbjct: 26 KWHCVDCNTTESIWACLSCSHVACGRYIEEHA 57
>sp|Q7ZUM8|UBP44_DANRE Ubiquitin carboxyl-terminal hydrolase 44 OS=Danio rerio GN=usp44
PE=2 SV=1
Length = 695
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 20/32 (62%)
Query: 42 KAPCVDCASVAENWVCLICYQVRCGRYIEEHS 73
K CVDC + W CL C V CGRYIEEH+
Sbjct: 23 KWHCVDCNTTESVWACLSCSHVACGRYIEEHA 54
>sp|Q95QN6|YQOE_CAEEL Uncharacterized RING finger protein EEED8.16 OS=Caenorhabditis
elegans GN=EEED8.16 PE=4 SV=1
Length = 590
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 29 PLVAPVPQSGVDVKAPCVDCASVAENWVCLICYQVRCGRYIEEHS 73
P+ V V + C DC + W+CLIC + CGRY E+H+
Sbjct: 294 PVCRYVQSPEVVAEQRCNDCGMSNDLWICLICGNIGCGRYAEQHA 338
>sp|Q6P9L4|UBP49_MOUSE Ubiquitin carboxyl-terminal hydrolase 49 OS=Mus musculus GN=Usp49
PE=2 SV=1
Length = 685
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 45 CVDCASVAENWVCLICYQVRCGRYIEEHS 73
C+ CA+ W CL C V CGRYIE+H+
Sbjct: 26 CLQCATTESAWACLKCSHVACGRYIEDHA 54
>sp|Q70CQ1|UBP49_HUMAN Ubiquitin carboxyl-terminal hydrolase 49 OS=Homo sapiens GN=USP49
PE=2 SV=1
Length = 688
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 45 CVDCASVAENWVCLICYQVRCGRYIEEHS 73
C++CA+ W CL C V CGRYIE+H+
Sbjct: 26 CLECATTESVWACLKCSHVACGRYIEDHA 54
>sp|P38748|ETP1_YEAST RING finger protein ETP1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=ETP1 PE=1 SV=1
Length = 585
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 43 APCVDCASVAENWVCLICYQVRCGRYIEEHS 73
A C C S W+CLIC V CGRY +H+
Sbjct: 299 AHCATCGSTDNLWICLICGNVGCGRYNSKHA 329
>sp|Q7Z569|BRAP_HUMAN BRCA1-associated protein OS=Homo sapiens GN=BRAP PE=1 SV=2
Length = 592
Score = 37.7 bits (86), Expect = 0.023, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 45 CVDCASVAENWVCLICYQVRCGRYIEEHS 73
C +C W+CLIC + CGRY+ H+
Sbjct: 317 CFECGVQENLWICLICGHIGCGRYVSRHA 345
>sp|O13747|EPT1_SCHPO RING finger protein ETP1 homolog OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC16E8.13 PE=3 SV=1
Length = 547
Score = 37.0 bits (84), Expect = 0.037, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 23 ADCPHTPLVAPVPQSGVDVKAPCVDCASVAENWVCLICYQVRCGRYIEEHSNE 75
+ CP V S + ++ C C + W+CLIC + CGRY + H+ +
Sbjct: 242 SSCPVCRYTQKVQSS--EFQSKCTVCCYDKDLWICLICGNIGCGRYHDAHAKQ 292
>sp|Q99MP8|BRAP_MOUSE BRCA1-associated protein OS=Mus musculus GN=Brap PE=1 SV=1
Length = 591
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 44 PCVDCASVAEN-WVCLICYQVRCGRYIEEHS 73
C +C V EN W+CLIC + CGRY+ H+
Sbjct: 315 KCFECG-VQENLWICLICGHIGCGRYVSRHA 344
>sp|Q8C2S0|UBP44_MOUSE Ubiquitin carboxyl-terminal hydrolase 44 OS=Mus musculus GN=Usp44
PE=2 SV=3
Length = 711
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 42 KAPCVDCASVAENWVCLICYQVRCGRYIEEHS 73
K C+ C + W CL C V CG+YI+EH+
Sbjct: 23 KWYCMVCNTTESIWACLSCSHVACGKYIQEHA 54
>sp|Q54QE6|SIR2A_DICDI NAD-dependent deacetylase sir2A OS=Dictyostelium discoideum
GN=sir2A PE=2 SV=1
Length = 512
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 45 CVDCASVAENWVCLICYQVRCGRYIEEHSNE 75
C C +ENW+C+ C V C R++ H+ E
Sbjct: 34 CHACNDESENWICMTCGVVSCSRHVNGHAGE 64
>sp|Q91W36|UBP3_MOUSE Ubiquitin carboxyl-terminal hydrolase 3 OS=Mus musculus GN=Usp3
PE=2 SV=1
Length = 520
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 8/59 (13%)
Query: 24 DCPH-------TPLVAPVPQSGVDVKAPCVDCASVAENWVCLICYQVRCGRYIEEHSNE 75
+CPH P A P +G C C S WVCL C V CGRY+ H+ +
Sbjct: 2 ECPHLSSSVCIAPDSAKFP-NGSPSSWCCSVCRSNKSPWVCLTCSSVHCGRYVNGHAKK 59
>sp|Q9Y6I4|UBP3_HUMAN Ubiquitin carboxyl-terminal hydrolase 3 OS=Homo sapiens GN=USP3
PE=1 SV=2
Length = 520
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 8/59 (13%)
Query: 24 DCPH-------TPLVAPVPQSGVDVKAPCVDCASVAENWVCLICYQVRCGRYIEEHSNE 75
+CPH P A P +G C C S WVCL C V CGRY+ H+ +
Sbjct: 2 ECPHLSSSVCIAPDSAKFP-NGSPSSWCCSVCRSNKSPWVCLTCSSVHCGRYVNGHAKK 59
>sp|P38237|UBP14_YEAST Ubiquitin carboxyl-terminal hydrolase 14 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=UBP14 PE=1
SV=2
Length = 781
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 9 QALVNEEMFLVTPLADCPHTP--LVAPVPQSGVDVKAPCVDCASVAENWVCLICYQVRCG 66
Q +++ V ++ CPHT + P++ V++ C C W+CL C + CG
Sbjct: 155 QDFEDKKNSWVLEISTCPHTENFQIPSKPENTVNLNQ-CSSCDLTQNLWLCLHCGNIGCG 213
Query: 67 RY---IEEHS 73
R I+ HS
Sbjct: 214 REQIGIDGHS 223
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.452
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,941,874
Number of Sequences: 539616
Number of extensions: 974666
Number of successful extensions: 2078
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2056
Number of HSP's gapped (non-prelim): 25
length of query: 76
length of database: 191,569,459
effective HSP length: 47
effective length of query: 29
effective length of database: 166,207,507
effective search space: 4820017703
effective search space used: 4820017703
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)