Query psy14516
Match_columns 76
No_of_seqs 103 out of 471
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 21:54:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14516.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14516hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3c5k_A HD6, histone deacetylas 99.7 1.2E-18 4.1E-23 111.7 4.4 57 20-76 2-58 (109)
2 2ida_A Hypothetical protein; z 99.6 2E-16 6.9E-21 100.7 1.2 50 23-76 3-57 (102)
3 2g45_A Ubiquitin carboxyl-term 99.5 3.2E-15 1.1E-19 98.2 3.5 54 23-76 13-74 (129)
4 2uzg_A Ubiquitin carboxyl-term 99.5 6.8E-16 2.3E-20 96.8 -0.8 55 22-76 3-62 (97)
5 2i50_A Ubiquitin carboxyl-term 99.3 6.8E-14 2.3E-18 91.4 -1.1 55 22-76 4-77 (126)
6 3ihp_A Ubiquitin carboxyl-term 99.2 4.6E-12 1.6E-16 101.8 4.4 59 18-76 188-255 (854)
7 3mhs_A Ubiquitin carboxyl-term 99.1 2.5E-12 8.6E-17 95.3 -2.8 57 18-76 2-82 (476)
8 1wg2_A Zinc finger (AN1-like) 89.3 0.51 1.7E-05 27.3 3.7 32 41-73 14-49 (64)
9 1wfh_A Zinc finger (AN1-like) 87.4 0.53 1.8E-05 27.2 2.9 32 41-73 14-49 (64)
10 1x4w_A Hypothetical protein FL 85.9 0.63 2.2E-05 27.1 2.7 32 41-73 14-52 (67)
11 1wfp_A Zinc finger (AN1-like) 85.4 0.62 2.1E-05 27.6 2.6 32 41-73 24-59 (74)
12 1wff_A Riken cDNA 2810002D23 p 78.8 1.8 6.3E-05 26.2 3.0 32 41-73 24-60 (85)
13 1wfl_A Zinc finger protein 216 70.8 6.7 0.00023 23.1 3.9 32 41-73 24-59 (74)
14 1wfe_A Riken cDNA 2310008M20 p 70.3 5.3 0.00018 23.9 3.5 49 24-72 7-60 (86)
15 1dl6_A Transcription factor II 60.0 8.5 0.00029 21.1 2.8 27 41-67 10-43 (58)
16 2ysl_A Tripartite motif-contai 55.9 11 0.00036 20.2 2.8 28 40-67 18-45 (73)
17 6rxn_A Rubredoxin; electron tr 52.3 5.8 0.0002 21.1 1.2 11 54-64 4-14 (46)
18 1vq8_Z 50S ribosomal protein L 52.0 7 0.00024 23.2 1.6 27 41-67 26-58 (83)
19 2ysj_A Tripartite motif-contai 51.8 11 0.00039 19.6 2.4 28 40-67 18-45 (63)
20 2k1p_A Zinc finger RAN-binding 51.1 7.9 0.00027 18.9 1.5 17 52-68 4-20 (33)
21 2lk0_A RNA-binding protein 5; 50.8 8.3 0.00028 18.7 1.6 16 53-68 4-19 (32)
22 1wys_A Riken cDNA 2310008M20 p 48.1 19 0.00065 20.9 3.1 32 41-72 13-49 (75)
23 3pwf_A Rubrerythrin; non heme 47.7 7.1 0.00024 25.6 1.3 15 52-66 136-150 (170)
24 2ct2_A Tripartite motif protei 47.3 22 0.00074 19.5 3.2 28 40-67 13-44 (88)
25 1t1h_A Gspef-atpub14, armadill 46.0 21 0.00072 19.3 3.0 27 41-67 7-33 (78)
26 1pft_A TFIIB, PFTFIIBN; N-term 46.0 19 0.00064 18.6 2.6 15 53-67 23-37 (50)
27 2b0o_E UPLC1; arfgap, structur 45.0 15 0.0005 25.1 2.6 28 40-67 40-67 (301)
28 2ecj_A Tripartite motif-contai 44.9 14 0.00047 18.7 2.0 28 40-67 13-40 (58)
29 1bor_A Transcription factor PM 43.5 14 0.00049 19.1 1.9 8 44-51 28-35 (56)
30 2yur_A Retinoblastoma-binding 43.4 24 0.00083 19.1 3.0 28 40-67 13-41 (74)
31 2olm_A Nucleoporin-like protei 42.4 16 0.00056 23.4 2.4 28 40-67 23-50 (140)
32 1yk4_A Rubredoxin, RD; electro 42.3 11 0.00039 20.3 1.4 13 54-66 2-14 (52)
33 2v3b_B Rubredoxin 2, rubredoxi 41.9 11 0.00039 20.5 1.4 13 54-66 3-15 (55)
34 2ecv_A Tripartite motif-contai 41.7 20 0.00067 19.3 2.4 27 41-67 18-44 (85)
35 2d8t_A Dactylidin, ring finger 41.2 22 0.00074 19.0 2.5 27 41-67 14-40 (71)
36 2akl_A PHNA-like protein PA012 41.2 12 0.0004 24.5 1.5 23 42-64 27-54 (138)
37 2iqj_A Stromal membrane-associ 38.7 16 0.00055 23.2 1.9 28 40-67 25-52 (134)
38 2p57_A GTPase-activating prote 38.4 18 0.0006 23.6 2.1 28 40-67 35-62 (144)
39 1chc_A Equine herpes virus-1 r 37.6 31 0.001 18.0 2.7 26 42-67 5-31 (68)
40 2ecn_A Ring finger protein 141 37.5 29 0.001 18.2 2.7 26 40-66 13-38 (70)
41 1x4v_A Hypothetical protein LO 37.5 17 0.0006 20.4 1.7 32 41-72 11-47 (63)
42 2ecw_A Tripartite motif-contai 37.4 31 0.0011 18.5 2.8 26 41-66 18-43 (85)
43 1yuz_A Nigerythrin; rubrythrin 37.4 12 0.00042 25.0 1.2 14 53-66 170-183 (202)
44 2djb_A Polycomb group ring fin 37.1 30 0.001 18.5 2.6 28 40-67 13-41 (72)
45 2owa_A Arfgap-like finger doma 36.6 18 0.00062 23.2 1.9 28 40-67 34-61 (138)
46 2csy_A Zinc finger protein 183 36.5 29 0.001 18.9 2.6 26 41-66 14-39 (81)
47 1dx8_A Rubredoxin; electron tr 36.4 14 0.00048 21.1 1.2 13 53-65 6-18 (70)
48 2kiz_A E3 ubiquitin-protein li 36.2 34 0.0012 17.9 2.8 26 41-66 13-41 (69)
49 2kn9_A Rubredoxin; metalloprot 36.2 15 0.00052 21.8 1.4 14 53-66 26-39 (81)
50 4gzn_C ZFP-57, zinc finger pro 35.8 8.1 0.00028 20.7 0.1 25 52-76 30-55 (60)
51 2lvu_A Zinc finger and BTB dom 42.0 7.7 0.00026 15.8 0.0 22 55-76 3-25 (26)
52 2ecm_A Ring finger and CHY zin 34.9 41 0.0014 16.6 2.9 26 42-67 5-34 (55)
53 1wfk_A Zinc finger, FYVE domai 34.7 30 0.001 20.2 2.5 27 41-67 8-38 (88)
54 1s24_A Rubredoxin 2; electron 34.7 16 0.00055 21.9 1.3 15 52-66 33-47 (87)
55 2crw_A ARF GAP 3, ADP-ribosyla 34.4 22 0.00076 23.1 2.1 28 40-67 27-54 (149)
56 2crr_A Stromal membrane-associ 34.3 20 0.00067 23.0 1.8 28 40-67 27-54 (141)
57 1x4u_A Zinc finger, FYVE domai 33.9 26 0.00089 20.0 2.2 27 41-67 13-43 (84)
58 3fl2_A E3 ubiquitin-protein li 33.9 25 0.00085 20.9 2.1 27 41-67 51-77 (124)
59 1e8j_A Rubredoxin; iron-sulfur 33.7 13 0.00044 20.1 0.7 12 54-65 3-14 (52)
60 4rxn_A Rubredoxin; electron tr 33.4 16 0.00055 20.0 1.1 12 54-65 3-14 (54)
61 1lko_A Rubrerythrin all-iron(I 33.3 15 0.0005 24.3 1.1 14 54-67 155-168 (191)
62 2ea6_A Ring finger protein 4; 32.9 21 0.0007 18.6 1.5 28 40-67 13-47 (69)
63 3lrq_A E3 ubiquitin-protein li 32.9 27 0.00091 20.2 2.1 27 41-67 21-48 (100)
64 4ayc_A E3 ubiquitin-protein li 32.7 25 0.00086 21.4 2.1 25 43-67 54-78 (138)
65 3l11_A E3 ubiquitin-protein li 32.3 23 0.00077 20.8 1.7 25 42-66 15-39 (115)
66 2fc7_A ZZZ3 protein; structure 32.0 71 0.0024 18.4 3.9 21 42-62 21-44 (82)
67 3o47_A ADP-ribosylation factor 31.7 24 0.00083 24.5 2.0 28 40-67 35-62 (329)
68 2lvr_A Zinc finger and BTB dom 37.9 9.9 0.00034 15.7 0.0 21 55-75 4-25 (30)
69 3ihp_A Ubiquitin carboxyl-term 31.4 30 0.001 27.9 2.7 46 26-72 30-80 (854)
70 2kvh_A Zinc finger and BTB dom 31.4 7.8 0.00027 16.0 -0.4 22 54-75 3-25 (27)
71 3dwd_A ADP-ribosylation factor 31.1 25 0.00086 23.0 1.9 28 40-67 36-63 (147)
72 2ecy_A TNF receptor-associated 30.8 16 0.00054 19.3 0.8 26 41-66 14-39 (66)
73 2e5r_A Dystrobrevin alpha; ZZ 30.7 55 0.0019 17.9 3.1 34 43-76 12-55 (63)
74 3t7l_A Zinc finger FYVE domain 29.9 23 0.00078 20.7 1.4 26 42-67 20-49 (90)
75 3hct_A TNF receptor-associated 29.8 39 0.0013 19.9 2.5 28 40-67 16-43 (118)
76 1vfy_A Phosphatidylinositol-3- 29.7 20 0.00068 20.0 1.1 25 43-67 12-40 (73)
77 3j20_Y 30S ribosomal protein S 29.6 39 0.0013 17.9 2.2 20 45-64 22-47 (50)
78 1fp0_A KAP-1 corepressor; PHD 29.5 84 0.0029 18.6 4.0 20 41-60 24-43 (88)
79 2egp_A Tripartite motif-contai 29.2 16 0.00056 19.6 0.7 25 42-66 12-36 (79)
80 3knv_A TNF receptor-associated 29.0 37 0.0013 21.1 2.4 28 40-67 29-56 (141)
81 1jm7_A BRCA1, breast cancer ty 28.8 27 0.00092 20.0 1.6 23 44-66 23-45 (112)
82 1bbo_A Human enhancer-binding 28.3 18 0.00061 17.6 0.7 23 53-75 28-51 (57)
83 3ztg_A E3 ubiquitin-protein li 27.6 29 0.00099 19.3 1.6 26 41-66 12-38 (92)
84 2lvt_A Zinc finger and BTB dom 33.4 13 0.00045 15.4 0.0 21 56-76 4-25 (29)
85 1jm7_B BARD1, BRCA1-associated 27.1 36 0.0012 20.0 2.0 22 45-66 25-47 (117)
86 2yw8_A RUN and FYVE domain-con 27.0 30 0.001 19.7 1.6 27 41-67 18-48 (82)
87 2m0d_A Zinc finger and BTB dom 26.8 12 0.00041 15.3 -0.2 11 55-65 4-14 (30)
88 2kvg_A Zinc finger and BTB dom 26.7 13 0.00045 15.3 -0.0 22 55-76 4-26 (27)
89 1iym_A EL5; ring-H2 finger, ub 26.4 63 0.0021 15.9 2.7 26 42-67 5-34 (55)
90 1y02_A CARP2, FYVE-ring finger 26.0 31 0.001 21.6 1.6 26 42-67 19-48 (120)
91 1srk_A Zinc finger protein ZFP 25.9 15 0.0005 16.0 0.0 22 53-74 6-28 (35)
92 2xeu_A Ring finger protein 4; 25.8 20 0.00068 18.3 0.6 25 43-67 4-35 (64)
93 2cr8_A MDM4 protein; ZF-ranbp 25.6 33 0.0011 18.9 1.5 11 52-62 9-19 (53)
94 2lce_A B-cell lymphoma 6 prote 25.5 16 0.00055 19.1 0.2 23 52-74 43-66 (74)
95 2cot_A Zinc finger protein 435 25.5 34 0.0011 17.8 1.5 25 52-76 44-69 (77)
96 3ng2_A RNF4, snurf, ring finge 25.3 21 0.00072 18.7 0.6 27 41-67 9-42 (71)
97 2dj8_A Protein CBFA2T1; zinc f 25.1 23 0.00079 19.0 0.8 26 41-67 14-40 (60)
98 1x4j_A Ring finger protein 38; 25.1 54 0.0019 17.5 2.4 27 41-67 22-51 (75)
99 1rik_A E6APC1 peptide; E6-bind 25.0 15 0.00051 15.0 -0.0 20 55-74 3-23 (29)
100 4ic3_A E3 ubiquitin-protein li 24.7 38 0.0013 18.4 1.7 26 41-66 23-49 (74)
101 3sub_A ADP-ribosylation factor 24.6 31 0.001 23.0 1.4 27 41-67 21-47 (163)
102 3zyq_A Hepatocyte growth facto 24.6 32 0.0011 23.2 1.6 26 42-67 164-193 (226)
103 1z2q_A LM5-1; membrane protein 24.3 33 0.0011 19.6 1.4 27 41-67 20-50 (84)
104 3cc2_Z 50S ribosomal protein L 24.2 34 0.0012 21.6 1.6 27 41-67 59-91 (116)
105 2jun_A Midline-1; B-BOX, TRIM, 24.2 53 0.0018 18.7 2.3 26 43-68 4-32 (101)
106 2ckl_A Polycomb group ring fin 24.2 44 0.0015 19.3 2.0 27 41-67 14-41 (108)
107 2yts_A Zinc finger protein 484 24.1 20 0.00069 16.7 0.4 22 53-74 11-33 (46)
108 1joc_A EEA1, early endosomal a 23.7 35 0.0012 21.1 1.5 27 41-67 68-98 (125)
109 2kvf_A Zinc finger and BTB dom 23.5 16 0.00056 14.9 -0.1 21 55-75 4-25 (28)
110 2c2l_A CHIP, carboxy terminus 23.1 78 0.0027 20.7 3.3 30 40-69 206-235 (281)
111 2els_A Zinc finger protein 406 23.1 9.9 0.00034 16.8 -0.9 16 52-67 7-22 (36)
112 2epr_A POZ-, at HOOK-, and zin 23.0 25 0.00086 16.7 0.6 14 53-66 11-24 (48)
113 2kr4_A Ubiquitin conjugation f 22.9 30 0.001 19.6 1.0 29 40-68 12-40 (85)
114 1rmd_A RAG1; V(D)J recombinati 22.8 54 0.0018 19.1 2.2 27 41-67 22-48 (116)
115 2elv_A Zinc finger protein 406 22.7 22 0.00075 15.6 0.3 24 53-76 8-32 (36)
116 1znf_A 31ST zinc finger from X 22.7 12 0.00041 15.1 -0.6 8 57-64 4-11 (27)
117 3hcs_A TNF receptor-associated 22.3 60 0.0021 20.2 2.5 28 40-67 16-43 (170)
118 2kre_A Ubiquitin conjugation f 22.1 39 0.0013 19.8 1.5 30 40-69 27-56 (100)
119 3k7a_M Transcription initiatio 21.9 43 0.0015 23.8 1.9 10 41-50 41-50 (345)
120 2elx_A Zinc finger protein 406 21.6 17 0.00059 15.6 -0.2 14 53-66 6-19 (35)
121 2c6a_A Ubiquitin-protein ligas 21.6 33 0.0011 18.4 0.9 12 53-64 12-23 (46)
122 2yqq_A Zinc finger HIT domain- 21.1 54 0.0018 18.0 1.8 24 43-67 13-36 (56)
123 2y43_A E3 ubiquitin-protein li 21.0 60 0.002 18.3 2.1 26 41-66 21-47 (99)
124 1qxf_A GR2, 30S ribosomal prot 20.8 61 0.0021 18.5 2.0 26 43-68 8-40 (66)
125 3jue_A Arfgap with coiled-coil 20.6 53 0.0018 23.3 2.2 28 40-67 43-70 (368)
126 2kfq_A FP1; protein, de novo p 20.5 19 0.00064 15.6 -0.2 21 56-76 4-25 (32)
127 2m0e_A Zinc finger and BTB dom 20.0 12 0.00042 15.1 -0.9 11 56-66 4-14 (29)
No 1
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=99.74 E-value=1.2e-18 Score=111.71 Aligned_cols=57 Identities=54% Similarity=1.201 Sum_probs=50.2
Q ss_pred eeCCCCCCccCcccCCCCCCCCccccCcCCCCCCeeeecccCceeecCCCcchhccC
Q psy14516 20 TPLADCPHTPLVAPVPQSGVDVKAPCVDCASVAENWVCLICYQVRCGRYIEEHSNEF 76 (76)
Q Consensus 20 ~p~~~CpHl~~l~~~~~~~~~~~~~C~~C~~~~~~W~CL~Cg~v~CgR~~~~Ha~~H 76 (76)
+|+.+|||+..+.++++..++....|++|+...++|+||+||+||||||.++||++|
T Consensus 2 ~~~~~C~Hl~~l~~~~~~~~~~~~~C~~C~~~~~~W~CL~CG~vgCgr~~~~HA~~H 58 (109)
T 3c5k_A 2 SPLPWCPHLVAVCPIPAAGLDVTQPCGDCGTIQENWVCLSCYQVYCGRYINGHMLQH 58 (109)
T ss_dssp CCBSCCTTGGGCCCCCTTCCCTTCCCTTTCCCSSEEEETTTCCEEECTTTTCHHHHH
T ss_pred CCCCCCcCcccccccCCCCCCcCCcCccccCCCCeeeeeecCccccCCCcChHHHHH
Confidence 578899999988765544445678899999999999999999999999999999987
No 2
>2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5
Probab=99.58 E-value=2e-16 Score=100.70 Aligned_cols=50 Identities=20% Similarity=0.480 Sum_probs=43.2
Q ss_pred CCCCCccCcccCCCCCCCCccccCcCCCCC----CeeeecccCceeecCC-CcchhccC
Q psy14516 23 ADCPHTPLVAPVPQSGVDVKAPCVDCASVA----ENWVCLICYQVRCGRY-IEEHSNEF 76 (76)
Q Consensus 23 ~~CpHl~~l~~~~~~~~~~~~~C~~C~~~~----~~W~CL~Cg~v~CgR~-~~~Ha~~H 76 (76)
..|||+..++.+++ ..+.|.+|+..+ ++|+||+||+|||||| .|+||++|
T Consensus 3 ~~C~Hl~~~~~~~p----~~~~C~~C~~~~~~Wv~LwlCL~CG~VGC~r~s~~~HA~~H 57 (102)
T 2ida_A 3 MGCRHVAGIRTVTP----SALGCEECLKIGSPWVHLRICRTCGHVGCCDDSPHKHATRH 57 (102)
T ss_dssp CCCGGGGGCCCCCC----SSSSCHHHHTTTCCCSCBEEESSSCCCCBCTTSTTCHHHHH
T ss_pred CcCcCccccccCCC----CCCcCccccccCCcchheeeeeEcCCCcccCCCccHHHHHH
Confidence 35999998886544 368899999997 7778999999999998 99999987
No 3
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=99.53 E-value=3.2e-15 Score=98.22 Aligned_cols=54 Identities=19% Similarity=0.343 Sum_probs=44.8
Q ss_pred CCCCCccCcccCCCC-CC-CCccccCcCCCCCCeeeecccCceeecCCC------cchhccC
Q psy14516 23 ADCPHTPLVAPVPQS-GV-DVKAPCVDCASVAENWVCLICYQVRCGRYI------EEHSNEF 76 (76)
Q Consensus 23 ~~CpHl~~l~~~~~~-~~-~~~~~C~~C~~~~~~W~CL~Cg~v~CgR~~------~~Ha~~H 76 (76)
..|||+..+.+++.. .+ +..+.|++|+...++|+||+||+||||||. ++||++|
T Consensus 13 ~~C~h~~~l~q~~~~~~~~~~~~~C~~C~~~~~LwlCL~CG~vgCgr~~~~g~g~~~HA~~H 74 (129)
T 2g45_A 13 QVSKHAFSLKQLDNPARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEH 74 (129)
T ss_dssp EECTTTTTCCCCSSCCCCCCCBCCCSSSSCCSSEEEETTTCCEEECCBCTTSCBCCSHHHHH
T ss_pred CCCCCcCcccccccccccCCCCCcCccccCcCceEEeccCCccccCccccCCCCcCcHHHHH
Confidence 579999987764322 22 356789999999999999999999999986 9999987
No 4
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=99.52 E-value=6.8e-16 Score=96.82 Aligned_cols=55 Identities=29% Similarity=0.648 Sum_probs=44.6
Q ss_pred CCCCCCccCcccCCCCCC--CCccccCcCC-CCCCeeeecc--cCceeecCCCcchhccC
Q psy14516 22 LADCPHTPLVAPVPQSGV--DVKAPCVDCA-SVAENWVCLI--CYQVRCGRYIEEHSNEF 76 (76)
Q Consensus 22 ~~~CpHl~~l~~~~~~~~--~~~~~C~~C~-~~~~~W~CL~--Cg~v~CgR~~~~Ha~~H 76 (76)
...|||+..+.++++..+ +..+.|++|+ ...++|+||+ ||+||||||.++||++|
T Consensus 3 ~~~C~Hl~~~~~~~~~~~~~~~~~~C~~C~~~~~~lw~CL~~~Cg~vgCgr~~~~Ha~~H 62 (97)
T 2uzg_A 3 RNHCPHLDSVGEITKEDLIQKSLGTCQDCKVQGPNLWACLENRCSYVGCGESQVDHSTIH 62 (97)
T ss_dssp CCSCHHHHHSCCCCHHHHHHHTTTCCSSSCCCCSSCEEECCTTCCCEECCTTTTCHHHHH
T ss_pred CCCCcCcchhcccCcccccCCCCCcCcCcCCCCCCceeeecccCCCcccCCCcChHHHHH
Confidence 468999998776543221 3567899999 5566799999 99999999999999987
No 5
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens}
Probab=99.33 E-value=6.8e-14 Score=91.38 Aligned_cols=55 Identities=27% Similarity=0.511 Sum_probs=40.3
Q ss_pred CCCCCCccCcccCCC---CCC-CCccccCcCCC--------------CCCeeeecccCceeecCC-CcchhccC
Q psy14516 22 LADCPHTPLVAPVPQ---SGV-DVKAPCVDCAS--------------VAENWVCLICYQVRCGRY-IEEHSNEF 76 (76)
Q Consensus 22 ~~~CpHl~~l~~~~~---~~~-~~~~~C~~C~~--------------~~~~W~CL~Cg~v~CgR~-~~~Ha~~H 76 (76)
+..|||+..+..++. ... ...+.|.+|.. ..++|+||+||+|||||| .++||++|
T Consensus 4 ~~~C~H~~~~~~l~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~Lw~CL~CG~vgCgr~~~~~Ha~~H 77 (126)
T 2i50_A 4 MPVCRHIRKGLEQGNLKKALVNVEWNICQDCKTDNKVKDKAEEETEEKPSVWLCLKCGHQGCGRNSQEQHALKH 77 (126)
T ss_dssp -CCCSCHHHHCCHHHHHHHHSSCCSSSCHHHHTCTTSSCSSCTTTCCCCCEEEETTTCCEEECTTSSSCHHHHH
T ss_pred CCCCcChhhccccccccccccCCCCCcCccccccccccccccccccccccceeeeeCCccccCCCCcchHHHHH
Confidence 468999986432211 111 13467888886 689999999999999998 68999987
No 6
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=99.23 E-value=4.6e-12 Score=101.80 Aligned_cols=59 Identities=17% Similarity=0.299 Sum_probs=45.5
Q ss_pred eeeeC-CCCCCccCcccCCC-CCC-CCccccCcCCCCCCeeeecccCceeecCCC------cchhccC
Q psy14516 18 LVTPL-ADCPHTPLVAPVPQ-SGV-DVKAPCVDCASVAENWVCLICYQVRCGRYI------EEHSNEF 76 (76)
Q Consensus 18 av~p~-~~CpHl~~l~~~~~-~~~-~~~~~C~~C~~~~~~W~CL~Cg~v~CgR~~------~~Ha~~H 76 (76)
|...+ ..|+|+..+.+++. ..+ ...+.|.+|+...++|+||+||+|||||+. ++||++|
T Consensus 188 w~~~~~~~c~h~~~~~~~~~~~~~~~~~~~C~~c~~~~~lw~CL~Cg~vgC~r~~~~~~~~~~ha~~H 255 (854)
T 3ihp_A 188 WDGEVRQVSKHAFSLKQLDNPARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEH 255 (854)
T ss_dssp ----CCCBCTTTTTCCCCSSCCCCCSSCCCCSSSCCCSSEEEETTTCCEEECCBC-CCCBCCSHHHHH
T ss_pred hcCccCCCCcCccccccccccccCCCCCCcCcCcCCcCceEEEecCCCccccccccCCCCCchHHHHH
Confidence 55555 78999998765442 222 356889999999999999999999999975 8999987
No 7
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=99.10 E-value=2.5e-12 Score=95.28 Aligned_cols=57 Identities=19% Similarity=0.385 Sum_probs=40.8
Q ss_pred eeeeCCCCCCccCcccC---------------------CCC-CCCCccccCcCCCC--CCeeeecccCceeecCCCcchh
Q psy14516 18 LVTPLADCPHTPLVAPV---------------------PQS-GVDVKAPCVDCASV--AENWVCLICYQVRCGRYIEEHS 73 (76)
Q Consensus 18 av~p~~~CpHl~~l~~~---------------------~~~-~~~~~~~C~~C~~~--~~~W~CL~Cg~v~CgR~~~~Ha 73 (76)
||.||.+|||+..+-.. +.. .......|++|... .++|+||+||++|||+ ++||
T Consensus 2 ~~~~~~~C~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~~~~~~~~cl~cg~~~c~~--~~h~ 79 (476)
T 3mhs_A 2 AAAAMSICPHIQQVFQNEKSKDGVLKTCNAARYILNHSVPKEKFLNTMKCGTCHEINSGATFMCLQCGFCGCWN--HSHF 79 (476)
T ss_dssp ---CCCCCHHHHHHTTSHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHSBCTTTCCBCSSSEEEESSSSCEEETT--TTHH
T ss_pred CcccccCCcCHHHHhcchhhHHHHHHHhHHHHHhhccCchhhcccCCCCcccccCCCCCCceEeCCCCCCccCC--chHH
Confidence 68899999999986210 000 00123569999988 7999999999999998 8898
Q ss_pred ccC
Q psy14516 74 NEF 76 (76)
Q Consensus 74 ~~H 76 (76)
.+|
T Consensus 80 ~~H 82 (476)
T 3mhs_A 80 LSH 82 (476)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
No 8
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=89.29 E-value=0.51 Score=27.27 Aligned_cols=32 Identities=28% Similarity=0.693 Sum_probs=25.0
Q ss_pred CccccCcCCCCCCe--eeecccCceeecC--CCcchh
Q psy14516 41 VKAPCVDCASVAEN--WVCLICYQVRCGR--YIEEHS 73 (76)
Q Consensus 41 ~~~~C~~C~~~~~~--W~CL~Cg~v~CgR--~~~~Ha 73 (76)
...+|..|.....+ ..| .||.++|+. |...|.
T Consensus 14 ~~~rC~~C~kkvgl~~f~C-rCg~~FC~~HR~~e~H~ 49 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVMGFKC-KCGSTFCGSHRYPEKHE 49 (64)
T ss_dssp CSCSCTTTCCCCTTSCEEC-TTSCEECSSSCSSTTTT
T ss_pred cCCcChhhCCcccccCeEe-ecCCEecccCCCccccC
Confidence 56789999987554 679 899999994 666664
No 9
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=87.40 E-value=0.53 Score=27.23 Aligned_cols=32 Identities=28% Similarity=0.624 Sum_probs=24.8
Q ss_pred CccccCcCCCCCCe--eeecccCceeecC--CCcchh
Q psy14516 41 VKAPCVDCASVAEN--WVCLICYQVRCGR--YIEEHS 73 (76)
Q Consensus 41 ~~~~C~~C~~~~~~--W~CL~Cg~v~CgR--~~~~Ha 73 (76)
...+|..|.....+ ..| .||.++|++ |...|.
T Consensus 14 ~~~rC~~C~kkvgl~~f~C-rCg~~FC~~HRy~e~H~ 49 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLTGFMC-RCGTTFCGSHRYPEVHG 49 (64)
T ss_dssp SCCCCTTTCCCCCTTCEEC-SSSCEECTTTCSTTTTT
T ss_pred cCCcChhhCCccCccCEEe-ecCCEeccccCCcccCC
Confidence 56789999986554 679 799999994 666664
No 10
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.92 E-value=0.63 Score=27.08 Aligned_cols=32 Identities=28% Similarity=0.504 Sum_probs=25.9
Q ss_pred CccccCcCCCCCCe-----eeecccCceeecC--CCcchh
Q psy14516 41 VKAPCVDCASVAEN-----WVCLICYQVRCGR--YIEEHS 73 (76)
Q Consensus 41 ~~~~C~~C~~~~~~-----W~CL~Cg~v~CgR--~~~~Ha 73 (76)
...+|..|.....+ ..| .||.+.|+. |...|.
T Consensus 14 ~~~rC~~C~kk~gL~~~egf~C-rCg~~FC~~HRy~e~H~ 52 (67)
T 1x4w_A 14 SRRRCFQCQTKLELVQQELGSC-RCGYVFCMLHRLPEQHD 52 (67)
T ss_dssp CTTBCSSSCCBCCHHHHHHHCC-SSSCCCCTTTCSTGGGT
T ss_pred cCCcchhhCCeecccccCceEe-cCCCEehhccCCccccC
Confidence 46789999988877 479 999999994 666774
No 11
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=85.40 E-value=0.62 Score=27.63 Aligned_cols=32 Identities=28% Similarity=0.713 Sum_probs=24.8
Q ss_pred CccccCcCCCCCCe--eeecccCceeecC--CCcchh
Q psy14516 41 VKAPCVDCASVAEN--WVCLICYQVRCGR--YIEEHS 73 (76)
Q Consensus 41 ~~~~C~~C~~~~~~--W~CL~Cg~v~CgR--~~~~Ha 73 (76)
...+|..|.....+ ..| .||.++|+. |...|.
T Consensus 24 ~~~RC~~C~kkvgL~~f~C-rCg~~FCs~HRy~e~H~ 59 (74)
T 1wfp_A 24 TATRCLSCNKKVGVTGFKC-RCGSTFCGTHRYPESHE 59 (74)
T ss_dssp CCCBCSSSCCBCTTTCEEC-TTSCEECTTTCSTTTSC
T ss_pred cCccchhhcCcccccceEe-ccCCEeccccCCCcCCC
Confidence 56789999876554 779 899999995 666663
No 12
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=78.80 E-value=1.8 Score=26.15 Aligned_cols=32 Identities=25% Similarity=0.598 Sum_probs=24.2
Q ss_pred CccccCcCCCCCCe---eeecccCceeecC--CCcchh
Q psy14516 41 VKAPCVDCASVAEN---WVCLICYQVRCGR--YIEEHS 73 (76)
Q Consensus 41 ~~~~C~~C~~~~~~---W~CL~Cg~v~CgR--~~~~Ha 73 (76)
...+|..|.....+ ..| .||.++|++ |...|.
T Consensus 24 ~~~rC~~C~kkvgl~~~f~C-rCg~~FC~~HRy~e~H~ 60 (85)
T 1wff_A 24 IMKHCFLCGKKTGLATSFEC-RCGNNFCASHRYAEAHG 60 (85)
T ss_dssp CCCBCSSSCCBCSSSSCEEC-TTCCEECTTTCSTGGGT
T ss_pred cCccchhhCCeecccCCeEc-CCCCEecccCCCccCCC
Confidence 45789999976554 679 599999995 667664
No 13
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=70.84 E-value=6.7 Score=23.11 Aligned_cols=32 Identities=31% Similarity=0.738 Sum_probs=24.0
Q ss_pred CccccCcCCCCCCe--eeecccCceeec--CCCcchh
Q psy14516 41 VKAPCVDCASVAEN--WVCLICYQVRCG--RYIEEHS 73 (76)
Q Consensus 41 ~~~~C~~C~~~~~~--W~CL~Cg~v~Cg--R~~~~Ha 73 (76)
...+|..|...-.+ ..|- ||.++|+ ||...|.
T Consensus 24 ~~nRC~~CrKkvgL~gf~Cr-Cg~~FCs~HRy~e~H~ 59 (74)
T 1wfl_A 24 KKNRCFMCRKKVGLTGFDCR-CGNLFCGLHRYSDKHN 59 (74)
T ss_dssp CTTBCSSSCCBCGGGCEECT-TSCEECSSSCSTTTTT
T ss_pred cCCcChhhCCcccccCeecC-CCCEechhcCCCccCC
Confidence 45689999886443 5688 9999999 4666664
No 14
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=70.29 E-value=5.3 Score=23.88 Aligned_cols=49 Identities=22% Similarity=0.451 Sum_probs=29.5
Q ss_pred CCCCccCcccCCCCCCCCccccCc--CCCCCCee-eecccCceeecC--CCcch
Q psy14516 24 DCPHTPLVAPVPQSGVDVKAPCVD--CASVAENW-VCLICYQVRCGR--YIEEH 72 (76)
Q Consensus 24 ~CpHl~~l~~~~~~~~~~~~~C~~--C~~~~~~W-~CL~Cg~v~CgR--~~~~H 72 (76)
.||=+......+........+|.. |....-+- .|-.|+..+|.. +...|
T Consensus 7 ~C~~~~~~~~~~~~~~~~~~~C~~~~Ck~~~~l~f~C~~C~~~FC~~HR~~e~H 60 (86)
T 1wfe_A 7 GCSEVNVVKERPKTDEHKSYSCSFKGCTDVELVAVICPYCEKNFCLRHRHQSDH 60 (86)
T ss_dssp CCCCCCCCCCCCCCSCSCCEECCSTTCCCEESSCEECTTTCCEECGGGCSTGGG
T ss_pred cCCCcccccccccccCCCCCCCCCcCCCCCCccceECCCCCcccccccCCccCC
Confidence 466554322112222335677887 88764433 499999999994 55555
No 15
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=60.04 E-value=8.5 Score=21.07 Aligned_cols=27 Identities=22% Similarity=0.409 Sum_probs=18.3
Q ss_pred CccccCcCCC-------CCCeeeecccCceeecC
Q psy14516 41 VKAPCVDCAS-------VAENWVCLICYQVRCGR 67 (76)
Q Consensus 41 ~~~~C~~C~~-------~~~~W~CL~Cg~v~CgR 67 (76)
....|.+|+. ...-++|..||.|.=.+
T Consensus 10 ~~~~Cp~C~~~~lv~D~~~ge~vC~~CGlVl~e~ 43 (58)
T 1dl6_A 10 PRVTCPNHPDAILVEDYRAGDMICPECGLVVGDR 43 (58)
T ss_dssp SCCSBTTBSSSCCEECSSSCCEECTTTCCEECCS
T ss_pred ccccCcCCCCCceeEeCCCCeEEeCCCCCEEecc
Confidence 3445777753 34578899999887554
No 16
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.94 E-value=11 Score=20.18 Aligned_cols=28 Identities=18% Similarity=0.344 Sum_probs=22.0
Q ss_pred CCccccCcCCCCCCeeeecccCceeecC
Q psy14516 40 DVKAPCVDCASVAENWVCLICYQVRCGR 67 (76)
Q Consensus 40 ~~~~~C~~C~~~~~~W~CL~Cg~v~CgR 67 (76)
.....|..|...-...+-+.||+++|..
T Consensus 18 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~ 45 (73)
T 2ysl_A 18 QEEVICPICLDILQKPVTIDCGHNFCLK 45 (73)
T ss_dssp CCCCBCTTTCSBCSSEEECTTCCEEEHH
T ss_pred ccCCEeccCCcccCCeEEcCCCChhhHH
Confidence 3566799998877777778999998863
No 17
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=52.32 E-value=5.8 Score=21.12 Aligned_cols=11 Identities=27% Similarity=0.667 Sum_probs=5.5
Q ss_pred eeeecccCcee
Q psy14516 54 NWVCLICYQVR 64 (76)
Q Consensus 54 ~W~CL~Cg~v~ 64 (76)
.|+|..||.|.
T Consensus 4 ~y~C~vCGyvy 14 (46)
T 6rxn_A 4 KYVCNVCGYEY 14 (46)
T ss_dssp CEEETTTCCEE
T ss_pred EEECCCCCeEE
Confidence 35555555543
No 18
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=52.02 E-value=7 Score=23.18 Aligned_cols=27 Identities=22% Similarity=0.550 Sum_probs=21.3
Q ss_pred CccccCcCCC------CCCeeeecccCceeecC
Q psy14516 41 VKAPCVDCAS------VAENWVCLICYQVRCGR 67 (76)
Q Consensus 41 ~~~~C~~C~~------~~~~W~CL~Cg~v~CgR 67 (76)
....|..|+. ....|.|-.||.+..|-
T Consensus 26 ~~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~agg 58 (83)
T 1vq8_Z 26 EDHACPNCGEDRVDRQGTGIWQCSYCDYKFTGG 58 (83)
T ss_dssp SCEECSSSCCEEEEEEETTEEEETTTCCEEECC
T ss_pred ccCcCCCCCCcceeccCCCeEECCCCCCEecCC
Confidence 4567888884 34579999999998886
No 19
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.76 E-value=11 Score=19.61 Aligned_cols=28 Identities=18% Similarity=0.344 Sum_probs=22.0
Q ss_pred CCccccCcCCCCCCeeeecccCceeecC
Q psy14516 40 DVKAPCVDCASVAENWVCLICYQVRCGR 67 (76)
Q Consensus 40 ~~~~~C~~C~~~~~~W~CL~Cg~v~CgR 67 (76)
+....|..|...-..-+=+.||+++|..
T Consensus 18 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~ 45 (63)
T 2ysj_A 18 QEEVICPICLDILQKPVTIDCGHNFCLK 45 (63)
T ss_dssp CCCCBCTTTCSBCSSCEECTTSSEECHH
T ss_pred ccCCCCCcCCchhCCeEEeCCCCcchHH
Confidence 4566799999876666778999999864
No 20
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=51.05 E-value=7.9 Score=18.94 Aligned_cols=17 Identities=35% Similarity=0.851 Sum_probs=11.6
Q ss_pred CCeeeecccCceeecCC
Q psy14516 52 AENWVCLICYQVRCGRY 68 (76)
Q Consensus 52 ~~~W~CL~Cg~v~CgR~ 68 (76)
..-|+|..|+.+.-.|.
T Consensus 4 ~gDW~C~~C~~~Nfa~R 20 (33)
T 2k1p_A 4 ANDWQCKTCSNVNWARR 20 (33)
T ss_dssp SSSCBCSSSCCBCCTTC
T ss_pred CCCcccCCCCCcccccc
Confidence 44588888877766654
No 21
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=50.77 E-value=8.3 Score=18.73 Aligned_cols=16 Identities=25% Similarity=0.725 Sum_probs=11.8
Q ss_pred CeeeecccCceeecCC
Q psy14516 53 ENWVCLICYQVRCGRY 68 (76)
Q Consensus 53 ~~W~CL~Cg~v~CgR~ 68 (76)
.-|+|..|+.+.-.|.
T Consensus 4 gDW~C~~C~~~Nfa~r 19 (32)
T 2lk0_A 4 EDWLCNKCCLNNFRKR 19 (32)
T ss_dssp SEEECTTTCCEEETTC
T ss_pred CCCCcCcCcCCcChhc
Confidence 4588888888876654
No 22
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=48.10 E-value=19 Score=20.94 Aligned_cols=32 Identities=19% Similarity=0.300 Sum_probs=23.3
Q ss_pred CccccCc--CCCCCCeee-ecccCceeecC--CCcch
Q psy14516 41 VKAPCVD--CASVAENWV-CLICYQVRCGR--YIEEH 72 (76)
Q Consensus 41 ~~~~C~~--C~~~~~~W~-CL~Cg~v~CgR--~~~~H 72 (76)
...+|+. |...+-+.+ |-.|+.++|.+ +...|
T Consensus 13 ~g~~Cs~~~C~~~dflpf~C~~C~~~FC~~HR~~e~H 49 (75)
T 1wys_A 13 IGQHCQVQHCRQRDFLPFVCDGCSGIFCLEHRSKDSH 49 (75)
T ss_dssp CCCCCSCTTTCCCSCCCEECTTTCCEECSTTCSSGGG
T ss_pred cCCCcCcccCCCccceeeECcccCcCcCcccCCcccc
Confidence 4567877 887755443 99999999995 55555
No 23
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=47.75 E-value=7.1 Score=25.62 Aligned_cols=15 Identities=20% Similarity=0.541 Sum_probs=10.5
Q ss_pred CCeeeecccCceeec
Q psy14516 52 AENWVCLICYQVRCG 66 (76)
Q Consensus 52 ~~~W~CL~Cg~v~Cg 66 (76)
...|+|..||+|.=+
T Consensus 136 ~~~~~C~~CG~i~~~ 150 (170)
T 3pwf_A 136 KKVYICPICGYTAVD 150 (170)
T ss_dssp SCEEECTTTCCEEES
T ss_pred CCeeEeCCCCCeeCC
Confidence 467888888877543
No 24
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.28 E-value=22 Score=19.49 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=19.5
Q ss_pred CCccccCcCCCCCCe----eeecccCceeecC
Q psy14516 40 DVKAPCVDCASVAEN----WVCLICYQVRCGR 67 (76)
Q Consensus 40 ~~~~~C~~C~~~~~~----W~CL~Cg~v~CgR 67 (76)
.....|..|...-.. .+-+.||++.|..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~ 44 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQ 44 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHH
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHH
Confidence 355668888866444 6667889888863
No 25
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=46.05 E-value=21 Score=19.29 Aligned_cols=27 Identities=11% Similarity=-0.098 Sum_probs=19.4
Q ss_pred CccccCcCCCCCCeeeecccCceeecC
Q psy14516 41 VKAPCVDCASVAENWVCLICYQVRCGR 67 (76)
Q Consensus 41 ~~~~C~~C~~~~~~W~CL~Cg~v~CgR 67 (76)
....|..|...-..-+-+.||+++|..
T Consensus 7 ~~~~C~IC~~~~~~Pv~~~CgH~fc~~ 33 (78)
T 1t1h_A 7 EYFRCPISLELMKDPVIVSTGQTYERS 33 (78)
T ss_dssp SSSSCTTTSCCCSSEEEETTTEEEEHH
T ss_pred ccCCCCCccccccCCEEcCCCCeecHH
Confidence 456688887766666667888888864
No 26
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=45.98 E-value=19 Score=18.57 Aligned_cols=15 Identities=27% Similarity=0.295 Sum_probs=10.1
Q ss_pred CeeeecccCceeecC
Q psy14516 53 ENWVCLICYQVRCGR 67 (76)
Q Consensus 53 ~~W~CL~Cg~v~CgR 67 (76)
.-++|..||.+.=.+
T Consensus 23 gelvC~~CG~v~~e~ 37 (50)
T 1pft_A 23 GEIVCAKCGYVIEEN 37 (50)
T ss_dssp TEEEESSSCCBCCCC
T ss_pred CeEECcccCCccccc
Confidence 457788888776544
No 27
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=45.03 E-value=15 Score=25.06 Aligned_cols=28 Identities=18% Similarity=0.500 Sum_probs=24.1
Q ss_pred CCccccCcCCCCCCeeeecccCceeecC
Q psy14516 40 DVKAPCVDCASVAENWVCLICYQVRCGR 67 (76)
Q Consensus 40 ~~~~~C~~C~~~~~~W~CL~Cg~v~CgR 67 (76)
+....|.+|+...-.|..+..|.+.|-+
T Consensus 40 ~~n~~c~dc~~~~p~w~s~~~g~~~c~~ 67 (301)
T 2b0o_E 40 PGNSQCCDCGAADPTWLSTNLGVLTCIQ 67 (301)
T ss_dssp TTTTBCTTTCCBSCCEEETTTTEEECHH
T ss_pred CCCCcCCCCCCCCCCeEEeecCeEEcHH
Confidence 4678899999999999988888888865
No 28
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.89 E-value=14 Score=18.72 Aligned_cols=28 Identities=25% Similarity=0.438 Sum_probs=20.7
Q ss_pred CCccccCcCCCCCCeeeecccCceeecC
Q psy14516 40 DVKAPCVDCASVAENWVCLICYQVRCGR 67 (76)
Q Consensus 40 ~~~~~C~~C~~~~~~W~CL~Cg~v~CgR 67 (76)
.....|..|...-..-+=+.||+++|..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~ 40 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEPVIIECGHNFCKA 40 (58)
T ss_dssp CCCCBCSSSCCBCSSCCCCSSCCCCCHH
T ss_pred ccCCCCccCCcccCccEeCCCCCccCHH
Confidence 3556788888766655668899998874
No 29
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=43.50 E-value=14 Score=19.12 Aligned_cols=8 Identities=25% Similarity=0.787 Sum_probs=3.7
Q ss_pred ccCcCCCC
Q psy14516 44 PCVDCASV 51 (76)
Q Consensus 44 ~C~~C~~~ 51 (76)
.|..|...
T Consensus 28 fC~~Ci~~ 35 (56)
T 1bor_A 28 LCSGCLEA 35 (56)
T ss_dssp SBTTTCSS
T ss_pred ccHHHHcc
Confidence 34555443
No 30
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=43.45 E-value=24 Score=19.08 Aligned_cols=28 Identities=18% Similarity=0.443 Sum_probs=19.9
Q ss_pred CCccccCcCCCCCCeeeecc-cCceeecC
Q psy14516 40 DVKAPCVDCASVAENWVCLI-CYQVRCGR 67 (76)
Q Consensus 40 ~~~~~C~~C~~~~~~W~CL~-Cg~v~CgR 67 (76)
.....|..|...-..-+-+. ||+++|..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~ 41 (74)
T 2yur_A 13 PDELLCLICKDIMTDAVVIPCCGNSYCDE 41 (74)
T ss_dssp CGGGSCSSSCCCCTTCEECSSSCCEECTT
T ss_pred CCCCCCcCCChHHhCCeEcCCCCCHHHHH
Confidence 35566888887666566677 88888864
No 31
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=42.40 E-value=16 Score=23.40 Aligned_cols=28 Identities=18% Similarity=0.424 Sum_probs=22.8
Q ss_pred CCccccCcCCCCCCeeeecccCceeecC
Q psy14516 40 DVKAPCVDCASVAENWVCLICYQVRCGR 67 (76)
Q Consensus 40 ~~~~~C~~C~~~~~~W~CL~Cg~v~CgR 67 (76)
+....|.+|+...-.|+.+.=|..-|-+
T Consensus 23 p~N~~CaDCg~~~P~WaS~n~GvfiC~~ 50 (140)
T 2olm_A 23 PHNRKCFDCDQRGPTYVNMTVGSFVCTS 50 (140)
T ss_dssp GGGGSCTTTCSSCCCEEETTTTEEECHH
T ss_pred cCCCcCCCCCCCCCCceeeccCEEEchh
Confidence 3577899999999999988877777753
No 32
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=42.33 E-value=11 Score=20.29 Aligned_cols=13 Identities=23% Similarity=0.401 Sum_probs=9.4
Q ss_pred eeeecccCceeec
Q psy14516 54 NWVCLICYQVRCG 66 (76)
Q Consensus 54 ~W~CL~Cg~v~Cg 66 (76)
.|+|..||.|.=+
T Consensus 2 ~~~C~~CGyvYd~ 14 (52)
T 1yk4_A 2 KLSCKICGYIYDE 14 (52)
T ss_dssp EEEESSSSCEEET
T ss_pred cEEeCCCCeEECC
Confidence 5788888877644
No 33
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=41.92 E-value=11 Score=20.53 Aligned_cols=13 Identities=23% Similarity=0.823 Sum_probs=9.5
Q ss_pred eeeecccCceeec
Q psy14516 54 NWVCLICYQVRCG 66 (76)
Q Consensus 54 ~W~CL~Cg~v~Cg 66 (76)
.|+|..||.|.=+
T Consensus 3 ~y~C~~CGyvYd~ 15 (55)
T 2v3b_B 3 KWQCVVCGFIYDE 15 (55)
T ss_dssp EEEETTTCCEEET
T ss_pred cEEeCCCCeEECC
Confidence 5888888887644
No 34
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.68 E-value=20 Score=19.35 Aligned_cols=27 Identities=19% Similarity=0.354 Sum_probs=17.1
Q ss_pred CccccCcCCCCCCeeeecccCceeecC
Q psy14516 41 VKAPCVDCASVAENWVCLICYQVRCGR 67 (76)
Q Consensus 41 ~~~~C~~C~~~~~~W~CL~Cg~v~CgR 67 (76)
....|..|...-..-+=+.||++.|..
T Consensus 18 ~~~~C~IC~~~~~~p~~~~CgH~fC~~ 44 (85)
T 2ecv_A 18 EEVTCPICLELLTQPLSLDCGHSFCQA 44 (85)
T ss_dssp CCCCCTTTCSCCSSCBCCSSSCCBCTT
T ss_pred CCCCCCCCCcccCCceeCCCCCHHHHH
Confidence 445677777665555556777777753
No 35
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.23 E-value=22 Score=19.01 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=20.8
Q ss_pred CccccCcCCCCCCeeeecccCceeecC
Q psy14516 41 VKAPCVDCASVAENWVCLICYQVRCGR 67 (76)
Q Consensus 41 ~~~~C~~C~~~~~~W~CL~Cg~v~CgR 67 (76)
....|..|...-..-+-+.||+++|..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~CgH~fC~~ 40 (71)
T 2d8t_A 14 TVPECAICLQTCVHPVSLPCKHVFCYL 40 (71)
T ss_dssp SCCBCSSSSSBCSSEEEETTTEEEEHH
T ss_pred CCCCCccCCcccCCCEEccCCCHHHHH
Confidence 456788998876666778899998863
No 36
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=41.18 E-value=12 Score=24.52 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=17.3
Q ss_pred ccccCcCCC-----CCCeeeecccCcee
Q psy14516 42 KAPCVDCAS-----VAENWVCLICYQVR 64 (76)
Q Consensus 42 ~~~C~~C~~-----~~~~W~CL~Cg~v~ 64 (76)
...|..|.. .+.+|+|..|++.-
T Consensus 27 lP~CP~C~seytYeDg~l~vCPeC~hEW 54 (138)
T 2akl_A 27 LPPCPQCNSEYTYEDGALLVCPECAHEW 54 (138)
T ss_dssp SCCCTTTCCCCCEECSSSEEETTTTEEE
T ss_pred CCCCCCCCCcceEecCCeEECCcccccc
Confidence 345777774 46799999999875
No 37
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=38.73 E-value=16 Score=23.24 Aligned_cols=28 Identities=25% Similarity=0.459 Sum_probs=23.2
Q ss_pred CCccccCcCCCCCCeeeecccCceeecC
Q psy14516 40 DVKAPCVDCASVAENWVCLICYQVRCGR 67 (76)
Q Consensus 40 ~~~~~C~~C~~~~~~W~CL~Cg~v~CgR 67 (76)
+....|.+|+...-.|+.+.=|..-|-+
T Consensus 25 p~N~~CaDCg~~~P~WaS~n~GvfiC~~ 52 (134)
T 2iqj_A 25 EDNKFCADCQSKGPRWASWNIGVFICIR 52 (134)
T ss_dssp GGGGBCTTTCCBSCCEEETTTTEEECHH
T ss_pred cCCCcCCcCcCCCCCeEEecCCEEEhHh
Confidence 4678899999999999988888777754
No 38
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=38.39 E-value=18 Score=23.58 Aligned_cols=28 Identities=18% Similarity=0.513 Sum_probs=23.3
Q ss_pred CCccccCcCCCCCCeeeecccCceeecC
Q psy14516 40 DVKAPCVDCASVAENWVCLICYQVRCGR 67 (76)
Q Consensus 40 ~~~~~C~~C~~~~~~W~CL~Cg~v~CgR 67 (76)
+....|.+|+...-.|+++.=|..-|-+
T Consensus 35 p~N~~CaDCga~~P~WaS~n~GvfiC~~ 62 (144)
T 2p57_A 35 PTNKACFDCGAKNPSWASITYGVFLCID 62 (144)
T ss_dssp GGGGBCTTTCCBSCCEEEGGGTEEECHH
T ss_pred CCCCcCCCCcCCCCCeEEeccCEEEhhh
Confidence 4678899999999999988888777764
No 39
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=37.55 E-value=31 Score=18.00 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=17.3
Q ss_pred ccccCcCCCCCCe-eeecccCceeecC
Q psy14516 42 KAPCVDCASVAEN-WVCLICYQVRCGR 67 (76)
Q Consensus 42 ~~~C~~C~~~~~~-W~CL~Cg~v~CgR 67 (76)
...|..|...-.. -+-+.||++.|..
T Consensus 5 ~~~C~IC~~~~~~~~~~~~C~H~fc~~ 31 (68)
T 1chc_A 5 AERCPICLEDPSNYSMALPCLHAFCYV 31 (68)
T ss_dssp CCCCSSCCSCCCSCEEETTTTEEESTT
T ss_pred CCCCeeCCccccCCcEecCCCCeeHHH
Confidence 4457777766544 4677888887753
No 40
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.50 E-value=29 Score=18.25 Aligned_cols=26 Identities=19% Similarity=0.437 Sum_probs=20.5
Q ss_pred CCccccCcCCCCCCeeeecccCceeec
Q psy14516 40 DVKAPCVDCASVAENWVCLICYQVRCG 66 (76)
Q Consensus 40 ~~~~~C~~C~~~~~~W~CL~Cg~v~Cg 66 (76)
.....|..|...-.. +-+.||++.|.
T Consensus 13 ~~~~~C~IC~~~~~~-~~~~CgH~fc~ 38 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-LILPCAHSFCQ 38 (70)
T ss_dssp CCCCCCSSSCCSCCS-EEETTTEEECH
T ss_pred CCCCCCeeCCcCccC-cccCCCCcccH
Confidence 355679999987666 88899999886
No 41
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.46 E-value=17 Score=20.43 Aligned_cols=32 Identities=22% Similarity=0.364 Sum_probs=22.0
Q ss_pred CccccCc--CCCCCCee-eecccCceeec--CCCcch
Q psy14516 41 VKAPCVD--CASVAENW-VCLICYQVRCG--RYIEEH 72 (76)
Q Consensus 41 ~~~~C~~--C~~~~~~W-~CL~Cg~v~Cg--R~~~~H 72 (76)
...+|.. |....-+- .|-.|+..+|. ||...|
T Consensus 11 ~~~~Cs~~~Ck~~~ll~f~C~~C~~~FC~~HR~~e~H 47 (63)
T 1x4v_A 11 FTNKCERAGCRQREMMKLTCERCSRNFCIKHRHPLDH 47 (63)
T ss_dssp TCCCCCSTTCCCCCSSCCBCSSSCCBCCHHHHSTTSS
T ss_pred cCCCCCccCCCCCCccceECCCCCcccCcccCCccCC
Confidence 3456776 87664333 49999999999 465555
No 42
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=37.43 E-value=31 Score=18.47 Aligned_cols=26 Identities=19% Similarity=0.382 Sum_probs=17.1
Q ss_pred CccccCcCCCCCCeeeecccCceeec
Q psy14516 41 VKAPCVDCASVAENWVCLICYQVRCG 66 (76)
Q Consensus 41 ~~~~C~~C~~~~~~W~CL~Cg~v~Cg 66 (76)
....|..|...-..-+=+.||++.|.
T Consensus 18 ~~~~C~IC~~~~~~p~~~~CgH~fC~ 43 (85)
T 2ecw_A 18 EEVTCPICLELLKEPVSADCNHSFCR 43 (85)
T ss_dssp TTTSCTTTCSCCSSCEECTTSCCBCH
T ss_pred cCCCCcCCChhhCcceeCCCCCHHHH
Confidence 45567777766544445678887775
No 43
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=37.36 E-value=12 Score=25.04 Aligned_cols=14 Identities=29% Similarity=0.610 Sum_probs=8.7
Q ss_pred CeeeecccCceeec
Q psy14516 53 ENWVCLICYQVRCG 66 (76)
Q Consensus 53 ~~W~CL~Cg~v~Cg 66 (76)
..|+|..||++.=|
T Consensus 170 ~~~~C~~CG~i~~g 183 (202)
T 1yuz_A 170 KFHLCPICGYIHKG 183 (202)
T ss_dssp CEEECSSSCCEEES
T ss_pred cEEEECCCCCEEcC
Confidence 46777777766533
No 44
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.09 E-value=30 Score=18.50 Aligned_cols=28 Identities=14% Similarity=0.288 Sum_probs=19.3
Q ss_pred CCccccCcCCCCCCeeeec-ccCceeecC
Q psy14516 40 DVKAPCVDCASVAENWVCL-ICYQVRCGR 67 (76)
Q Consensus 40 ~~~~~C~~C~~~~~~W~CL-~Cg~v~CgR 67 (76)
+....|..|...-..-+-+ .||+++|..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~ 41 (72)
T 2djb_A 13 TPYILCSICKGYLIDATTITECLHTFCKS 41 (72)
T ss_dssp CGGGSCTTTSSCCSSCEECSSSCCEECHH
T ss_pred CCCCCCCCCChHHHCcCEECCCCCHHHHH
Confidence 3556788888765555555 788888863
No 45
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=36.60 E-value=18 Score=23.20 Aligned_cols=28 Identities=25% Similarity=0.528 Sum_probs=23.0
Q ss_pred CCccccCcCCCCCCeeeecccCceeecC
Q psy14516 40 DVKAPCVDCASVAENWVCLICYQVRCGR 67 (76)
Q Consensus 40 ~~~~~C~~C~~~~~~W~CL~Cg~v~CgR 67 (76)
+....|.+|+...-.|+.+.=|..-|-+
T Consensus 34 p~N~~CaDCga~~P~WaS~n~GvfiC~~ 61 (138)
T 2owa_A 34 PENRTCFDCESRNPTWLSLSFAVFICLN 61 (138)
T ss_dssp GGGGBCTTTCCBSCCEEETTTTEEECHH
T ss_pred cCCCcCCCCcCCCCCeEEecCCEEEhHh
Confidence 4678899999999999988777777754
No 46
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.47 E-value=29 Score=18.90 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=19.3
Q ss_pred CccccCcCCCCCCeeeecccCceeec
Q psy14516 41 VKAPCVDCASVAENWVCLICYQVRCG 66 (76)
Q Consensus 41 ~~~~C~~C~~~~~~W~CL~Cg~v~Cg 66 (76)
....|..|...-..-+=+.||+++|.
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~fC~ 39 (81)
T 2csy_A 14 IPFRCFICRQAFQNPVVTKCRHYFCE 39 (81)
T ss_dssp CCSBCSSSCSBCCSEEECTTSCEEEH
T ss_pred CCCCCcCCCchhcCeeEccCCCHhHH
Confidence 45668888876665666889998885
No 47
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=36.44 E-value=14 Score=21.14 Aligned_cols=13 Identities=15% Similarity=0.365 Sum_probs=7.6
Q ss_pred CeeeecccCceee
Q psy14516 53 ENWVCLICYQVRC 65 (76)
Q Consensus 53 ~~W~CL~Cg~v~C 65 (76)
..|+|..||.|.=
T Consensus 6 ~~y~C~vCGyiYd 18 (70)
T 1dx8_A 6 GKYECEACGYIYE 18 (70)
T ss_dssp SCEEETTTCCEEC
T ss_pred ceEEeCCCCEEEc
Confidence 3466666666643
No 48
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=36.22 E-value=34 Score=17.91 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=18.7
Q ss_pred CccccCcCCC---CCCeeeecccCceeec
Q psy14516 41 VKAPCVDCAS---VAENWVCLICYQVRCG 66 (76)
Q Consensus 41 ~~~~C~~C~~---~~~~W~CL~Cg~v~Cg 66 (76)
....|..|.. ..+..+.+.||+++|.
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~ 41 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCMHLFHQ 41 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTSCEEEH
T ss_pred CCCCCeeCCccccCCCcEEEeCCCCHHHH
Confidence 5566888854 3356677889999885
No 49
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=36.18 E-value=15 Score=21.76 Aligned_cols=14 Identities=14% Similarity=0.225 Sum_probs=9.3
Q ss_pred CeeeecccCceeec
Q psy14516 53 ENWVCLICYQVRCG 66 (76)
Q Consensus 53 ~~W~CL~Cg~v~Cg 66 (76)
..|+|..||+|.=+
T Consensus 26 ~~y~C~vCGyvYD~ 39 (81)
T 2kn9_A 26 KLFRCIQCGFEYDE 39 (81)
T ss_dssp CEEEETTTCCEEET
T ss_pred ceEEeCCCCEEEcC
Confidence 46777777777543
No 50
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=35.78 E-value=8.1 Score=20.70 Aligned_cols=25 Identities=12% Similarity=0.157 Sum_probs=15.1
Q ss_pred CCeeeecccCceeecCC-CcchhccC
Q psy14516 52 AENWVCLICYQVRCGRY-IEEHSNEF 76 (76)
Q Consensus 52 ~~~W~CL~Cg~v~CgR~-~~~Ha~~H 76 (76)
...+.|-.||...-.++ -..|++.|
T Consensus 30 ekp~~C~~C~k~F~~~~~L~~H~~~H 55 (60)
T 4gzn_C 30 YRPRSCPECGKCFRDQSEVNRHLKVH 55 (60)
T ss_dssp CCCEECTTTCCEESSHHHHHHHGGGG
T ss_pred CcCeECCCCCCCcCCHHHHHHHhCcc
Confidence 45677888887766542 35555443
No 51
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=42.02 E-value=7.7 Score=15.83 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=11.1
Q ss_pred eeecccCceeecCC-CcchhccC
Q psy14516 55 WVCLICYQVRCGRY-IEEHSNEF 76 (76)
Q Consensus 55 W~CL~Cg~v~CgR~-~~~Ha~~H 76 (76)
+.|-.||...-.++ -..|++.|
T Consensus 3 ~~C~~C~k~f~~~~~l~~H~~~H 25 (26)
T 2lvu_A 3 YVCERCGKRFVQSSQLANHIRHH 25 (26)
Confidence 34566666554432 34555544
No 52
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=34.90 E-value=41 Score=16.61 Aligned_cols=26 Identities=15% Similarity=0.128 Sum_probs=17.7
Q ss_pred ccccCcCCCCC----CeeeecccCceeecC
Q psy14516 42 KAPCVDCASVA----ENWVCLICYQVRCGR 67 (76)
Q Consensus 42 ~~~C~~C~~~~----~~W~CL~Cg~v~CgR 67 (76)
...|..|...- +..+-+.||++.|..
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~ 34 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRT 34 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCEEETT
T ss_pred CCcCcccChhhcCCCcCeEecCCCCcccHH
Confidence 45577777543 346778899988864
No 53
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=34.72 E-value=30 Score=20.18 Aligned_cols=27 Identities=22% Similarity=0.532 Sum_probs=19.3
Q ss_pred CccccCcCCCCCCee----eecccCceeecC
Q psy14516 41 VKAPCVDCASVAENW----VCLICYQVRCGR 67 (76)
Q Consensus 41 ~~~~C~~C~~~~~~W----~CL~Cg~v~CgR 67 (76)
....|..|...=.++ -|-.||.|.|+.
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~ 38 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNG 38 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETT
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChh
Confidence 445688888654433 499999999986
No 54
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=34.69 E-value=16 Score=21.92 Aligned_cols=15 Identities=20% Similarity=0.729 Sum_probs=11.2
Q ss_pred CCeeeecccCceeec
Q psy14516 52 AENWVCLICYQVRCG 66 (76)
Q Consensus 52 ~~~W~CL~Cg~v~Cg 66 (76)
-..|+|..||+|.=+
T Consensus 33 m~~y~C~vCGyvYD~ 47 (87)
T 1s24_A 33 YLKWICITCGHIYDE 47 (87)
T ss_dssp CCEEEETTTTEEEET
T ss_pred CceEECCCCCeEecC
Confidence 457888888888654
No 55
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.37 E-value=22 Score=23.12 Aligned_cols=28 Identities=18% Similarity=0.488 Sum_probs=22.8
Q ss_pred CCccccCcCCCCCCeeeecccCceeecC
Q psy14516 40 DVKAPCVDCASVAENWVCLICYQVRCGR 67 (76)
Q Consensus 40 ~~~~~C~~C~~~~~~W~CL~Cg~v~CgR 67 (76)
+....|.+|+...-.|+.+.=|..-|-+
T Consensus 27 p~N~~CaDCga~~P~WaS~n~GvfiC~~ 54 (149)
T 2crw_A 27 PTNKVCFDCGAKNPSWASITYGVFLCID 54 (149)
T ss_dssp TTTSBCSSSCCBSCCCEETTTTEECCHH
T ss_pred cCCCcCCCCcCCCCCcEEeccCEEEchh
Confidence 4678899999999999988777777754
No 56
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.30 E-value=20 Score=23.03 Aligned_cols=28 Identities=21% Similarity=0.457 Sum_probs=22.6
Q ss_pred CCccccCcCCCCCCeeeecccCceeecC
Q psy14516 40 DVKAPCVDCASVAENWVCLICYQVRCGR 67 (76)
Q Consensus 40 ~~~~~C~~C~~~~~~W~CL~Cg~v~CgR 67 (76)
+....|.+|+...-.|+.+.=|..-|-+
T Consensus 27 p~N~~CaDCga~~P~WaS~n~GvfiC~~ 54 (141)
T 2crr_A 27 EDNKYCADCEAKGPRWASWNIGVFICIR 54 (141)
T ss_dssp GGGSSCSSSCCSSCCSEETTTTEECCHH
T ss_pred ccCCcCCCCCCCCCCeEEeccCeEEhhh
Confidence 3567899999999999988777777753
No 57
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.90 E-value=26 Score=20.03 Aligned_cols=27 Identities=22% Similarity=0.502 Sum_probs=19.7
Q ss_pred CccccCcCCCCCCee----eecccCceeecC
Q psy14516 41 VKAPCVDCASVAENW----VCLICYQVRCGR 67 (76)
Q Consensus 41 ~~~~C~~C~~~~~~W----~CL~Cg~v~CgR 67 (76)
....|..|...=.+. -|-.||.|.|+.
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~ 43 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSR 43 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTT
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChh
Confidence 345688888765444 399999999986
No 58
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=33.90 E-value=25 Score=20.90 Aligned_cols=27 Identities=15% Similarity=0.411 Sum_probs=20.4
Q ss_pred CccccCcCCCCCCeeeecccCceeecC
Q psy14516 41 VKAPCVDCASVAENWVCLICYQVRCGR 67 (76)
Q Consensus 41 ~~~~C~~C~~~~~~W~CL~Cg~v~CgR 67 (76)
....|..|...-..-+-+.||+++|..
T Consensus 51 ~~~~C~IC~~~~~~p~~~~CgH~fC~~ 77 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITTVCQHNVCKD 77 (124)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHH
T ss_pred cCCCCCcCChHHcCcEEeeCCCcccHH
Confidence 345688888776667778899998863
No 59
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=33.70 E-value=13 Score=20.06 Aligned_cols=12 Identities=25% Similarity=0.470 Sum_probs=9.9
Q ss_pred eeeecccCceee
Q psy14516 54 NWVCLICYQVRC 65 (76)
Q Consensus 54 ~W~CL~Cg~v~C 65 (76)
.|+|..||.|.=
T Consensus 3 ~y~C~~CGyvYd 14 (52)
T 1e8j_A 3 IYVCTVCGYEYD 14 (52)
T ss_dssp CEECSSSCCCCC
T ss_pred cEEeCCCCeEEc
Confidence 589999998864
No 60
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=33.41 E-value=16 Score=19.96 Aligned_cols=12 Identities=17% Similarity=0.614 Sum_probs=9.4
Q ss_pred eeeecccCceee
Q psy14516 54 NWVCLICYQVRC 65 (76)
Q Consensus 54 ~W~CL~Cg~v~C 65 (76)
.|+|..||.|.=
T Consensus 3 ~y~C~vCGyvYd 14 (54)
T 4rxn_A 3 KYTCTVCGYIYD 14 (54)
T ss_dssp CEEETTTCCEEC
T ss_pred ceECCCCCeEEC
Confidence 588999988754
No 61
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=33.31 E-value=15 Score=24.28 Aligned_cols=14 Identities=36% Similarity=0.778 Sum_probs=11.1
Q ss_pred eeeecccCceeecC
Q psy14516 54 NWVCLICYQVRCGR 67 (76)
Q Consensus 54 ~W~CL~Cg~v~CgR 67 (76)
.|+|..||++.=|+
T Consensus 155 ~~~C~~CG~~~~g~ 168 (191)
T 1lko_A 155 KWRCRNCGYVHEGT 168 (191)
T ss_dssp EEEETTTCCEEEEE
T ss_pred eEEECCCCCEeeCC
Confidence 78999999887653
No 62
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.92 E-value=21 Score=18.56 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=19.6
Q ss_pred CCccccCcCCCCC-------CeeeecccCceeecC
Q psy14516 40 DVKAPCVDCASVA-------ENWVCLICYQVRCGR 67 (76)
Q Consensus 40 ~~~~~C~~C~~~~-------~~W~CL~Cg~v~CgR 67 (76)
+....|..|...- ...+-+.||+++|..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~ 47 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQ 47 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHH
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHH
Confidence 4566788888643 334778899998863
No 63
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=32.86 E-value=27 Score=20.16 Aligned_cols=27 Identities=19% Similarity=0.370 Sum_probs=19.7
Q ss_pred CccccCcCCCCCCeee-ecccCceeecC
Q psy14516 41 VKAPCVDCASVAENWV-CLICYQVRCGR 67 (76)
Q Consensus 41 ~~~~C~~C~~~~~~W~-CL~Cg~v~CgR 67 (76)
....|..|...-..-+ ++.||+++|..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~FC~~ 48 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARLCPHCSKLCCFS 48 (100)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHH
T ss_pred CCCCCccCCccccCccccCCCCChhhHH
Confidence 4566889987644444 59999999973
No 64
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=32.72 E-value=25 Score=21.43 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=18.6
Q ss_pred cccCcCCCCCCeeeecccCceeecC
Q psy14516 43 APCVDCASVAENWVCLICYQVRCGR 67 (76)
Q Consensus 43 ~~C~~C~~~~~~W~CL~Cg~v~CgR 67 (76)
..|..|...-..-+-+.||+.+|..
T Consensus 54 ~~C~iC~~~~~~~~~~~CgH~fc~~ 78 (138)
T 4ayc_A 54 LQCIICSEYFIEAVTLNCAHSFCSY 78 (138)
T ss_dssp SBCTTTCSBCSSEEEETTSCEEEHH
T ss_pred CCCcccCcccCCceECCCCCCccHH
Confidence 4588888776666677899988863
No 65
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=32.26 E-value=23 Score=20.75 Aligned_cols=25 Identities=24% Similarity=0.489 Sum_probs=17.1
Q ss_pred ccccCcCCCCCCeeeecccCceeec
Q psy14516 42 KAPCVDCASVAENWVCLICYQVRCG 66 (76)
Q Consensus 42 ~~~C~~C~~~~~~W~CL~Cg~v~Cg 66 (76)
...|..|...-..-+-+.||+++|.
T Consensus 15 ~~~C~iC~~~~~~p~~~~CgH~fC~ 39 (115)
T 3l11_A 15 ECQCGICMEILVEPVTLPCNHTLCK 39 (115)
T ss_dssp HHBCTTTCSBCSSCEECTTSCEECH
T ss_pred CCCCccCCcccCceeEcCCCCHHhH
Confidence 4557777766555566778887775
No 66
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=31.99 E-value=71 Score=18.42 Aligned_cols=21 Identities=24% Similarity=0.650 Sum_probs=11.7
Q ss_pred ccccCcCCC---CCCeeeecccCc
Q psy14516 42 KAPCVDCAS---VAENWVCLICYQ 62 (76)
Q Consensus 42 ~~~C~~C~~---~~~~W~CL~Cg~ 62 (76)
...|..|.. .+.-|-|+.|..
T Consensus 21 ~~~Cd~C~~~pI~G~RykC~~C~d 44 (82)
T 2fc7_A 21 GFKCDNCGIEPIQGVRWHCQDCPP 44 (82)
T ss_dssp SCCCSSSCCSSEESCEEEESSSCS
T ss_pred cCCCCCCCCCcceeceEECCcCCC
Confidence 334666653 245566777654
No 67
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=31.72 E-value=24 Score=24.53 Aligned_cols=28 Identities=21% Similarity=0.523 Sum_probs=23.7
Q ss_pred CCccccCcCCCCCCeeeecccCceeecC
Q psy14516 40 DVKAPCVDCASVAENWVCLICYQVRCGR 67 (76)
Q Consensus 40 ~~~~~C~~C~~~~~~W~CL~Cg~v~CgR 67 (76)
+....|.+|+...-.|+++.=|..-|.+
T Consensus 35 ~~n~~c~dc~~~~~~~~~~~~~~~~c~~ 62 (329)
T 3o47_A 35 DENNVCFECGAFNPQWVSVTYGIWICLE 62 (329)
T ss_dssp TTTTBCTTTCCBSCCEEEGGGTEEECHH
T ss_pred CCCCcCCCCCCCCCCeEEecCCEEEChh
Confidence 4677899999999999988888877765
No 68
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=37.86 E-value=9.9 Score=15.74 Aligned_cols=21 Identities=19% Similarity=0.468 Sum_probs=10.5
Q ss_pred eeecccCceeecCC-Ccchhcc
Q psy14516 55 WVCLICYQVRCGRY-IEEHSNE 75 (76)
Q Consensus 55 W~CL~Cg~v~CgR~-~~~Ha~~ 75 (76)
..|-.||...-.+. -..|.+.
T Consensus 4 ~~C~~C~k~f~~~~~l~~H~~~ 25 (30)
T 2lvr_A 4 YVCIHCQRQFADPGALQRHVRI 25 (30)
Confidence 45666666554442 3445443
No 69
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=31.39 E-value=30 Score=27.86 Aligned_cols=46 Identities=22% Similarity=0.377 Sum_probs=28.7
Q ss_pred CCccCcccCCCCCC-CCccccCcCC----CCCCeeeecccCceeecCCCcch
Q psy14516 26 PHTPLVAPVPQSGV-DVKAPCVDCA----SVAENWVCLICYQVRCGRYIEEH 72 (76)
Q Consensus 26 pHl~~l~~~~~~~~-~~~~~C~~C~----~~~~~W~CL~Cg~v~CgR~~~~H 72 (76)
||+..++. |.... --+..|.-|. ....+.|||.|..-+|.++..-|
T Consensus 30 ~~~~~~~~-p~~~~~v~k~eC~~~f~~~~~~~gl~vcl~~f~~~~~~~~~~~ 80 (854)
T 3ihp_A 30 SVLPTIRV-PKAGDRVHKDECAFSFDTPESEGGLYICMNTFLGFGKQYVERH 80 (854)
T ss_dssp HTGGGCCC-CCTTCCCCCSSCSSSSCCTTSTTCEEEETTTCCEECTTTHHHH
T ss_pred HhhcCCcC-CCCCCcEecccCceecCCCCCCCCeEEcccccccccHHHHHHH
Confidence 56666552 32111 1234577666 45679999999999998765444
No 70
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=31.38 E-value=7.8 Score=15.99 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=10.9
Q ss_pred eeeecccCceeecCC-Ccchhcc
Q psy14516 54 NWVCLICYQVRCGRY-IEEHSNE 75 (76)
Q Consensus 54 ~W~CL~Cg~v~CgR~-~~~Ha~~ 75 (76)
.+.|-.||...-.++ -..|++.
T Consensus 3 ~~~C~~C~k~f~~~~~l~~H~~~ 25 (27)
T 2kvh_A 3 PFSCSLCPQRSRDFSAMTKHLRT 25 (27)
T ss_dssp CEECSSSSCEESSHHHHHHHHHH
T ss_pred CccCCCcChhhCCHHHHHHHHHH
Confidence 456666766554332 2444443
No 71
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=31.06 E-value=25 Score=22.97 Aligned_cols=28 Identities=21% Similarity=0.523 Sum_probs=22.5
Q ss_pred CCccccCcCCCCCCeeeecccCceeecC
Q psy14516 40 DVKAPCVDCASVAENWVCLICYQVRCGR 67 (76)
Q Consensus 40 ~~~~~C~~C~~~~~~W~CL~Cg~v~CgR 67 (76)
+....|.+|+...-.|+.+.=|..-|.+
T Consensus 36 p~N~~CaDCga~~P~WaS~nlGvfiC~~ 63 (147)
T 3dwd_A 36 DENNVCFECGAFNPQWVSVTYGIWICLE 63 (147)
T ss_dssp TTTTBCTTTCCBSCCEEETTTTEEECHH
T ss_pred cCCCccCCCCCCCCCeEEecccEeEhHh
Confidence 4678899999999999877777776653
No 72
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.77 E-value=16 Score=19.26 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=16.1
Q ss_pred CccccCcCCCCCCeeeecccCceeec
Q psy14516 41 VKAPCVDCASVAENWVCLICYQVRCG 66 (76)
Q Consensus 41 ~~~~C~~C~~~~~~W~CL~Cg~v~Cg 66 (76)
....|..|...-..-+-+.||++.|.
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~fC~ 39 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSPKQTECGHRFCE 39 (66)
T ss_dssp CCEECTTTCCEESSCCCCSSSCCCCH
T ss_pred cCCCCCCCChHhcCeeECCCCCHHHH
Confidence 44557777655444444677877775
No 73
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.74 E-value=55 Score=17.94 Aligned_cols=34 Identities=24% Similarity=0.484 Sum_probs=19.7
Q ss_pred cccCcCC---CCCCeeeecccCce-eec------CCCcchhccC
Q psy14516 43 APCVDCA---SVAENWVCLICYQV-RCG------RYIEEHSNEF 76 (76)
Q Consensus 43 ~~C~~C~---~~~~~W~CL~Cg~v-~Cg------R~~~~Ha~~H 76 (76)
..|..|. +.+.-|.|+.|... .|. +....|...|
T Consensus 12 ~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g~~~~~H~~~H 55 (63)
T 2e5r_A 12 VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHAGGSHSNQH 55 (63)
T ss_dssp SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHCCCCSSSCTTC
T ss_pred CCCcCCCCcceecceEEecCCCCchhHHHHHhCCCcCCCCCCCC
Confidence 4577776 34566788888553 453 3344555444
No 74
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=29.89 E-value=23 Score=20.70 Aligned_cols=26 Identities=27% Similarity=0.586 Sum_probs=19.4
Q ss_pred ccccCcCCCCCCee----eecccCceeecC
Q psy14516 42 KAPCVDCASVAENW----VCLICYQVRCGR 67 (76)
Q Consensus 42 ~~~C~~C~~~~~~W----~CL~Cg~v~CgR 67 (76)
...|..|...-.++ -|-.||.+.|+.
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~ 49 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGV 49 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGG
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCc
Confidence 45688888654443 499999999986
No 75
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=29.76 E-value=39 Score=19.94 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=20.8
Q ss_pred CCccccCcCCCCCCeeeecccCceeecC
Q psy14516 40 DVKAPCVDCASVAENWVCLICYQVRCGR 67 (76)
Q Consensus 40 ~~~~~C~~C~~~~~~W~CL~Cg~v~CgR 67 (76)
+....|..|...-..-+-+.||+++|..
T Consensus 16 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~ 43 (118)
T 3hct_A 16 ESKYECPICLMALREAVQTPCGHRFCKA 43 (118)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEEEHH
T ss_pred CCCCCCCcCChhhcCeEECCcCChhhHH
Confidence 3556788888776666667899998863
No 76
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=29.69 E-value=20 Score=20.04 Aligned_cols=25 Identities=24% Similarity=0.502 Sum_probs=18.7
Q ss_pred cccCcCCCCCCee----eecccCceeecC
Q psy14516 43 APCVDCASVAENW----VCLICYQVRCGR 67 (76)
Q Consensus 43 ~~C~~C~~~~~~W----~CL~Cg~v~CgR 67 (76)
..|..|...=.++ -|-.||.+.|+.
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~ 40 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQE 40 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGG
T ss_pred CcccCCCCccCCccccccCCCCCEEEccc
Confidence 4688888655443 399999999986
No 77
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=29.58 E-value=39 Score=17.89 Aligned_cols=20 Identities=25% Similarity=0.813 Sum_probs=13.1
Q ss_pred cCcCCC------CCCeeeecccCcee
Q psy14516 45 CVDCAS------VAENWVCLICYQVR 64 (76)
Q Consensus 45 C~~C~~------~~~~W~CL~Cg~v~ 64 (76)
|..|+. ..+.|.|-.||.+.
T Consensus 22 CP~CG~~~fm~~~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 22 CPRCGPGVFMADHGDRWACGKCGYTE 47 (50)
T ss_dssp CSSSCSSCEEEECSSEEECSSSCCEE
T ss_pred CCCCCCceEEecCCCeEECCCCCCEE
Confidence 555653 35677888888764
No 78
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=29.52 E-value=84 Score=18.55 Aligned_cols=20 Identities=20% Similarity=0.502 Sum_probs=9.9
Q ss_pred CccccCcCCCCCCeeeeccc
Q psy14516 41 VKAPCVDCASVAENWVCLIC 60 (76)
Q Consensus 41 ~~~~C~~C~~~~~~W~CL~C 60 (76)
....|..|+..+++-.|-.|
T Consensus 24 n~~~C~vC~~~g~LL~CD~C 43 (88)
T 1fp0_A 24 SATICRVCQKPGDLVMCNQC 43 (88)
T ss_dssp SSSCCSSSCSSSCCEECTTS
T ss_pred CCCcCcCcCCCCCEEECCCC
Confidence 34445555555544444444
No 79
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=29.21 E-value=16 Score=19.63 Aligned_cols=25 Identities=20% Similarity=0.432 Sum_probs=11.8
Q ss_pred ccccCcCCCCCCeeeecccCceeec
Q psy14516 42 KAPCVDCASVAENWVCLICYQVRCG 66 (76)
Q Consensus 42 ~~~C~~C~~~~~~W~CL~Cg~v~Cg 66 (76)
...|..|...-..-+=+.||++.|.
T Consensus 12 ~~~C~IC~~~~~~p~~l~CgH~fC~ 36 (79)
T 2egp_A 12 EVTCPICLELLTEPLSLDCGHSLCR 36 (79)
T ss_dssp CCEETTTTEECSSCCCCSSSCCCCH
T ss_pred CCCCcCCCcccCCeeECCCCCHHHH
Confidence 3445555543333333456665554
No 80
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=29.01 E-value=37 Score=21.12 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=21.6
Q ss_pred CCccccCcCCCCCCeeeecccCceeecC
Q psy14516 40 DVKAPCVDCASVAENWVCLICYQVRCGR 67 (76)
Q Consensus 40 ~~~~~C~~C~~~~~~W~CL~Cg~v~CgR 67 (76)
+....|..|...-..-+-+.||+++|..
T Consensus 29 ~~~~~C~IC~~~~~~pv~~~CgH~FC~~ 56 (141)
T 3knv_A 29 EAKYLCSACRNVLRRPFQAQCGHRYCSF 56 (141)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEEEHH
T ss_pred CcCcCCCCCChhhcCcEECCCCCccCHH
Confidence 4567799998776666778999999963
No 81
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=28.84 E-value=27 Score=20.05 Aligned_cols=23 Identities=22% Similarity=0.498 Sum_probs=11.3
Q ss_pred ccCcCCCCCCeeeecccCceeec
Q psy14516 44 PCVDCASVAENWVCLICYQVRCG 66 (76)
Q Consensus 44 ~C~~C~~~~~~W~CL~Cg~v~Cg 66 (76)
.|..|...-..-+-+.||++.|.
T Consensus 23 ~C~IC~~~~~~p~~~~CgH~fC~ 45 (112)
T 1jm7_A 23 ECPICLELIKEPVSTKCDHIFCK 45 (112)
T ss_dssp SCSSSCCCCSSCCBCTTSCCCCS
T ss_pred CCcccChhhcCeEECCCCCHHHH
Confidence 45555544333334555555554
No 82
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=28.30 E-value=18 Score=17.62 Aligned_cols=23 Identities=13% Similarity=0.273 Sum_probs=12.8
Q ss_pred CeeeecccCceeecCC-Ccchhcc
Q psy14516 53 ENWVCLICYQVRCGRY-IEEHSNE 75 (76)
Q Consensus 53 ~~W~CL~Cg~v~CgR~-~~~Ha~~ 75 (76)
..+.|..|+...-.+. -..|++.
T Consensus 28 ~~~~C~~C~~~f~~~~~l~~H~~~ 51 (57)
T 1bbo_A 28 RPYHCTYCNFSFKTKGNLTKHMKS 51 (57)
T ss_dssp CCEECSSSSCEESSHHHHHHHHHS
T ss_pred CCccCCCCCchhcCHHHHHHHHHH
Confidence 4577777777654432 3444443
No 83
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=27.59 E-value=29 Score=19.31 Aligned_cols=26 Identities=19% Similarity=0.480 Sum_probs=16.1
Q ss_pred CccccCcCCCCCCeeeecc-cCceeec
Q psy14516 41 VKAPCVDCASVAENWVCLI-CYQVRCG 66 (76)
Q Consensus 41 ~~~~C~~C~~~~~~W~CL~-Cg~v~Cg 66 (76)
....|..|...-..-+-+. ||+++|.
T Consensus 12 ~~~~C~IC~~~~~~p~~~~~CgH~fC~ 38 (92)
T 3ztg_A 12 DELLCLICKDIMTDAVVIPCCGNSYCD 38 (92)
T ss_dssp TTTEETTTTEECSSCEECTTTCCEECH
T ss_pred cCCCCCCCChhhcCceECCCCCCHHHH
Confidence 4556777775544444556 7777775
No 84
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=33.36 E-value=13 Score=15.36 Aligned_cols=21 Identities=14% Similarity=0.369 Sum_probs=10.0
Q ss_pred eecccCceeecCC-CcchhccC
Q psy14516 56 VCLICYQVRCGRY-IEEHSNEF 76 (76)
Q Consensus 56 ~CL~Cg~v~CgR~-~~~Ha~~H 76 (76)
.|-.||...-..+ -..|.+.|
T Consensus 4 ~C~~C~k~f~~~~~l~~H~~~H 25 (29)
T 2lvt_A 4 QCVMCGKAFTQASSLIAHVRQH 25 (29)
Confidence 4555665554432 34454433
No 85
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=27.05 E-value=36 Score=20.05 Aligned_cols=22 Identities=32% Similarity=0.872 Sum_probs=9.4
Q ss_pred cCcCCCCCCeeeec-ccCceeec
Q psy14516 45 CVDCASVAENWVCL-ICYQVRCG 66 (76)
Q Consensus 45 C~~C~~~~~~W~CL-~Cg~v~Cg 66 (76)
|..|...-..-+-+ .||+++|.
T Consensus 25 C~IC~~~~~~pv~~~~CgH~fC~ 47 (117)
T 1jm7_B 25 CSRCTNILREPVCLGGCEHIFCS 47 (117)
T ss_dssp CSSSCSCCSSCBCCCSSSCCBCT
T ss_pred CCCCChHhhCccEeCCCCCHHHH
Confidence 44444433333333 44444443
No 86
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=27.01 E-value=30 Score=19.72 Aligned_cols=27 Identities=19% Similarity=0.419 Sum_probs=18.9
Q ss_pred CccccCcCCCCCCee----eecccCceeecC
Q psy14516 41 VKAPCVDCASVAENW----VCLICYQVRCGR 67 (76)
Q Consensus 41 ~~~~C~~C~~~~~~W----~CL~Cg~v~CgR 67 (76)
....|..|...=.+. -|-.||.+.|+.
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~ 48 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNT 48 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSG
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChH
Confidence 345688888654433 488999999986
No 87
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=26.82 E-value=12 Score=15.30 Aligned_cols=11 Identities=18% Similarity=0.434 Sum_probs=6.2
Q ss_pred eeecccCceee
Q psy14516 55 WVCLICYQVRC 65 (76)
Q Consensus 55 W~CL~Cg~v~C 65 (76)
+.|-.||...-
T Consensus 4 ~~C~~C~~~f~ 14 (30)
T 2m0d_A 4 YQCDYCGRSFS 14 (30)
T ss_dssp EECTTTCCEES
T ss_pred ccCCCCCcccC
Confidence 45666666543
No 88
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=26.68 E-value=13 Score=15.35 Aligned_cols=22 Identities=14% Similarity=0.292 Sum_probs=11.7
Q ss_pred eeecccCceeecCC-CcchhccC
Q psy14516 55 WVCLICYQVRCGRY-IEEHSNEF 76 (76)
Q Consensus 55 W~CL~Cg~v~CgR~-~~~Ha~~H 76 (76)
..|-.||...-.++ -..|++.|
T Consensus 4 ~~C~~C~k~f~~~~~l~~H~~~H 26 (27)
T 2kvg_A 4 YRCPLCRAGCPSLASMQAHMRGH 26 (27)
T ss_dssp EEETTTTEEESCHHHHHHHHTTC
T ss_pred cCCCCCCcccCCHHHHHHHHHhc
Confidence 55777776654432 34555443
No 89
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=26.36 E-value=63 Score=15.91 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=13.3
Q ss_pred ccccCcCCCCCC---eeeecc-cCceeecC
Q psy14516 42 KAPCVDCASVAE---NWVCLI-CYQVRCGR 67 (76)
Q Consensus 42 ~~~C~~C~~~~~---~W~CL~-Cg~v~CgR 67 (76)
...|..|...-. ..+-+. ||+++|..
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~ 34 (55)
T 1iym_A 5 GVECAVCLAELEDGEEARFLPRCGHGFHAE 34 (55)
T ss_dssp SCCCTTTCCCCCTTSCCEECSSSCCEECTT
T ss_pred CCcCccCCccccCCCceEECCCCCCcccHH
Confidence 344666654322 233343 77777653
No 90
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=26.03 E-value=31 Score=21.57 Aligned_cols=26 Identities=27% Similarity=0.594 Sum_probs=18.4
Q ss_pred ccccCcCCCCCCee----eecccCceeecC
Q psy14516 42 KAPCVDCASVAENW----VCLICYQVRCGR 67 (76)
Q Consensus 42 ~~~C~~C~~~~~~W----~CL~Cg~v~CgR 67 (76)
...|..|...=... -|-.||.+.|+.
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~ 48 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMT 48 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGG
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHH
Confidence 34688888654433 399999999986
No 91
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=25.87 E-value=15 Score=16.04 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=11.8
Q ss_pred CeeeecccCceeecCC-Ccchhc
Q psy14516 53 ENWVCLICYQVRCGRY-IEEHSN 74 (76)
Q Consensus 53 ~~W~CL~Cg~v~CgR~-~~~Ha~ 74 (76)
..+.|-.||...-.+. -..|++
T Consensus 6 k~~~C~~C~k~f~~~~~l~~H~~ 28 (35)
T 1srk_A 6 RPFVCRICLSAFTTKANCARHLK 28 (35)
T ss_dssp SCEECSSSCCEESSHHHHHHHHG
T ss_pred cCeeCCCCCcccCCHHHHHHHHH
Confidence 3566777776654432 244443
No 92
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=25.84 E-value=20 Score=18.33 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=15.5
Q ss_pred cccCcCCCCC-------CeeeecccCceeecC
Q psy14516 43 APCVDCASVA-------ENWVCLICYQVRCGR 67 (76)
Q Consensus 43 ~~C~~C~~~~-------~~W~CL~Cg~v~CgR 67 (76)
..|..|...- +..+-+.||++.|..
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~ 35 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQ 35 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHH
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHH
Confidence 4466666532 234677888888763
No 93
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=25.58 E-value=33 Score=18.88 Aligned_cols=11 Identities=27% Similarity=1.051 Sum_probs=5.6
Q ss_pred CCeeeecccCc
Q psy14516 52 AENWVCLICYQ 62 (76)
Q Consensus 52 ~~~W~CL~Cg~ 62 (76)
.+.|.|+.|+.
T Consensus 9 eD~WkC~~C~k 19 (53)
T 2cr8_A 9 EDEWQCTECKK 19 (53)
T ss_dssp SCCEECSSSCC
T ss_pred cceeecccccc
Confidence 44555555553
No 94
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=25.53 E-value=16 Score=19.06 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=13.8
Q ss_pred CCeeeecccCceeecCC-Ccchhc
Q psy14516 52 AENWVCLICYQVRCGRY-IEEHSN 74 (76)
Q Consensus 52 ~~~W~CL~Cg~v~CgR~-~~~Ha~ 74 (76)
...+.|-.|+...-.+. -..|++
T Consensus 43 ~~~~~C~~C~k~f~~~~~L~~H~~ 66 (74)
T 2lce_A 43 EKPYRCNICGAQFNRPANLKTHTR 66 (74)
T ss_dssp CCSEECTTTCCEESCHHHHHHHHH
T ss_pred CCCEECCCCCchhCCHHHHHHHHH
Confidence 34577888887765542 344443
No 95
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=25.53 E-value=34 Score=17.85 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=14.7
Q ss_pred CCeeeecccCceeecCC-CcchhccC
Q psy14516 52 AENWVCLICYQVRCGRY-IEEHSNEF 76 (76)
Q Consensus 52 ~~~W~CL~Cg~v~CgR~-~~~Ha~~H 76 (76)
...+.|..|+...-.+. -..|++.|
T Consensus 44 ~~~~~C~~C~~~f~~~~~L~~H~~~H 69 (77)
T 2cot_A 44 EKPYKCDECGKAFIQRSHLIGHHRVH 69 (77)
T ss_dssp SCSEECSSSCCEESSHHHHHHHGGGS
T ss_pred CcCeeCCCCCCccCCHHHHHHHHHHh
Confidence 34577888887665542 34555443
No 96
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=25.27 E-value=21 Score=18.74 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=18.7
Q ss_pred CccccCcCCCCC-------CeeeecccCceeecC
Q psy14516 41 VKAPCVDCASVA-------ENWVCLICYQVRCGR 67 (76)
Q Consensus 41 ~~~~C~~C~~~~-------~~W~CL~Cg~v~CgR 67 (76)
....|..|...- +..+-+.||++.|..
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~ 42 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQ 42 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHH
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHH
Confidence 456688887542 344778899998863
No 97
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=25.12 E-value=23 Score=18.98 Aligned_cols=26 Identities=23% Similarity=0.639 Sum_probs=18.9
Q ss_pred CccccCcCCCCCCeeeecccCce-eecC
Q psy14516 41 VKAPCVDCASVAENWVCLICYQV-RCGR 67 (76)
Q Consensus 41 ~~~~C~~C~~~~~~W~CL~Cg~v-~CgR 67 (76)
....|..|+. ..+-.|-.|..+ .|++
T Consensus 14 ~~~~C~~C~~-~~~~~Cs~C~~v~YCs~ 40 (60)
T 2dj8_A 14 SSESCWNCGR-KASETCSGCNTARYCGS 40 (60)
T ss_dssp CSCCCSSSCS-CCCEECTTTSCCEESSH
T ss_pred CCcccccCCC-CCcccCCCCCCEeeeCH
Confidence 4567999988 456778888775 6665
No 98
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.11 E-value=54 Score=17.46 Aligned_cols=27 Identities=19% Similarity=0.306 Sum_probs=19.5
Q ss_pred CccccCcCCC---CCCeeeecccCceeecC
Q psy14516 41 VKAPCVDCAS---VAENWVCLICYQVRCGR 67 (76)
Q Consensus 41 ~~~~C~~C~~---~~~~W~CL~Cg~v~CgR 67 (76)
....|..|.. ..+..+.|.||+++|..
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~ 51 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAK 51 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEEETT
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHhHHH
Confidence 4566888884 34556788899998864
No 99
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=24.99 E-value=15 Score=15.02 Aligned_cols=20 Identities=15% Similarity=0.187 Sum_probs=9.9
Q ss_pred eeecccCceeecCC-Ccchhc
Q psy14516 55 WVCLICYQVRCGRY-IEEHSN 74 (76)
Q Consensus 55 W~CL~Cg~v~CgR~-~~~Ha~ 74 (76)
..|-.||...-.++ -..|++
T Consensus 3 ~~C~~C~k~f~~~~~l~~H~~ 23 (29)
T 1rik_A 3 FACPECPKRFMRSDHLTLHIL 23 (29)
T ss_dssp EECSSSSCEESCSHHHHHHHT
T ss_pred ccCCCCCchhCCHHHHHHHHH
Confidence 34666666554442 234443
No 100
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=24.65 E-value=38 Score=18.45 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=20.0
Q ss_pred CccccCcCCCCCCeeeecccCce-eec
Q psy14516 41 VKAPCVDCASVAENWVCLICYQV-RCG 66 (76)
Q Consensus 41 ~~~~C~~C~~~~~~W~CL~Cg~v-~Cg 66 (76)
....|..|......-+-+-||+. .|.
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~ 49 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCK 49 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCH
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHH
Confidence 34568888888777777889998 765
No 101
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=24.64 E-value=31 Score=22.96 Aligned_cols=27 Identities=22% Similarity=0.501 Sum_probs=22.1
Q ss_pred CccccCcCCCCCCeeeecccCceeecC
Q psy14516 41 VKAPCVDCASVAENWVCLICYQVRCGR 67 (76)
Q Consensus 41 ~~~~C~~C~~~~~~W~CL~Cg~v~CgR 67 (76)
....|.+|+...-.|+.+.=|..-|.+
T Consensus 21 ~N~~CaDCga~~P~WaS~nlGvflCi~ 47 (163)
T 3sub_A 21 SNNKCFDCGISNPDWVSVNHGIFLCIN 47 (163)
T ss_dssp GGGBCTTTCCBSCCEEETTTTEEECHH
T ss_pred CCCccccCCCCCCCeEEecCCeeEHHh
Confidence 567899999999999988777777754
No 102
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=24.58 E-value=32 Score=23.16 Aligned_cols=26 Identities=27% Similarity=0.613 Sum_probs=20.1
Q ss_pred ccccCcCCCCCCee----eecccCceeecC
Q psy14516 42 KAPCVDCASVAENW----VCLICYQVRCGR 67 (76)
Q Consensus 42 ~~~C~~C~~~~~~W----~CL~Cg~v~CgR 67 (76)
...|..|...-..+ -|-.||.+.|++
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~ 193 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGK 193 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTT
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChh
Confidence 45799998655544 399999999997
No 103
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=24.26 E-value=33 Score=19.61 Aligned_cols=27 Identities=30% Similarity=0.603 Sum_probs=19.6
Q ss_pred CccccCcCCCCCCe----eeecccCceeecC
Q psy14516 41 VKAPCVDCASVAEN----WVCLICYQVRCGR 67 (76)
Q Consensus 41 ~~~~C~~C~~~~~~----W~CL~Cg~v~CgR 67 (76)
....|..|...=.+ --|-.||.+.|+.
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~ 50 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGD 50 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTG
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChH
Confidence 44568888865433 3499999999986
No 104
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=24.23 E-value=34 Score=21.58 Aligned_cols=27 Identities=22% Similarity=0.550 Sum_probs=21.7
Q ss_pred CccccCcCCC------CCCeeeecccCceeecC
Q psy14516 41 VKAPCVDCAS------VAENWVCLICYQVRCGR 67 (76)
Q Consensus 41 ~~~~C~~C~~------~~~~W~CL~Cg~v~CgR 67 (76)
....|..|+. ....|.|-.|+.+..|-
T Consensus 59 akytCPfCGk~~vKR~avGIW~C~~Cgk~fAGG 91 (116)
T 3cc2_Z 59 EDHACPNCGEDRVDRQGTGIWQCSYCDYKFTGG 91 (116)
T ss_dssp SCEECSSSCCEEEEEEETTEEEETTTCCEEECC
T ss_pred cCCcCCCCCCceeEecCceeEECCCCCCEEECC
Confidence 4566999985 34579999999998886
No 105
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=24.21 E-value=53 Score=18.65 Aligned_cols=26 Identities=19% Similarity=0.461 Sum_probs=18.5
Q ss_pred cccCcCCC---CCCeeeecccCceeecCC
Q psy14516 43 APCVDCAS---VAENWVCLICYQVRCGRY 68 (76)
Q Consensus 43 ~~C~~C~~---~~~~W~CL~Cg~v~CgR~ 68 (76)
..|..|.. ..-...|+.|+...|..-
T Consensus 4 ~~C~~C~~~~~~~av~~C~~C~~~~C~~C 32 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVTCEVSYCDEC 32 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETTTTEEECHHH
T ss_pred CCCcCCCCCCCCCceEECCcCChHHhHHH
Confidence 45888874 344556999999999753
No 106
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=24.15 E-value=44 Score=19.25 Aligned_cols=27 Identities=19% Similarity=0.363 Sum_probs=17.9
Q ss_pred CccccCcCCCCCCeeeec-ccCceeecC
Q psy14516 41 VKAPCVDCASVAENWVCL-ICYQVRCGR 67 (76)
Q Consensus 41 ~~~~C~~C~~~~~~W~CL-~Cg~v~CgR 67 (76)
....|..|...-..-+-+ .||+++|..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~ 41 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDATTIIECLHSFCKT 41 (108)
T ss_dssp GGTBCTTTSSBCSSEEEETTTCCEEEHH
T ss_pred CcCCCccCChHHhCcCEeCCCCChhhHH
Confidence 455688887665545554 888888863
No 107
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.06 E-value=20 Score=16.68 Aligned_cols=22 Identities=14% Similarity=0.410 Sum_probs=11.6
Q ss_pred CeeeecccCceeecCC-Ccchhc
Q psy14516 53 ENWVCLICYQVRCGRY-IEEHSN 74 (76)
Q Consensus 53 ~~W~CL~Cg~v~CgR~-~~~Ha~ 74 (76)
..+.|..|+...-.++ -..|++
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~ 33 (46)
T 2yts_A 11 KPYICNECGKSFIQKSHLNRHRR 33 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHGG
T ss_pred cCEECCCCChhhCChHHHHHHHH
Confidence 3466777776654442 344443
No 108
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=23.74 E-value=35 Score=21.11 Aligned_cols=27 Identities=19% Similarity=0.433 Sum_probs=20.1
Q ss_pred CccccCcCCCCCCee----eecccCceeecC
Q psy14516 41 VKAPCVDCASVAENW----VCLICYQVRCGR 67 (76)
Q Consensus 41 ~~~~C~~C~~~~~~W----~CL~Cg~v~CgR 67 (76)
....|..|...-... -|-.||.|.|+.
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~ 98 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAE 98 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGG
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChH
Confidence 345688888754433 499999999986
No 109
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=23.46 E-value=16 Score=14.86 Aligned_cols=21 Identities=19% Similarity=0.384 Sum_probs=9.9
Q ss_pred eeecccCceeecCC-Ccchhcc
Q psy14516 55 WVCLICYQVRCGRY-IEEHSNE 75 (76)
Q Consensus 55 W~CL~Cg~v~CgR~-~~~Ha~~ 75 (76)
..|-.||...-.++ -..|.+.
T Consensus 4 ~~C~~C~k~f~~~~~l~~H~~~ 25 (28)
T 2kvf_A 4 YSCSVCGKRFSLKHQMETHYRV 25 (28)
T ss_dssp EECSSSCCEESCHHHHHHHHTT
T ss_pred ccCCCCCcccCCHHHHHHHHHh
Confidence 45666666544332 2444443
No 110
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=23.14 E-value=78 Score=20.67 Aligned_cols=30 Identities=3% Similarity=-0.385 Sum_probs=22.9
Q ss_pred CCccccCcCCCCCCeeeecccCceeecCCC
Q psy14516 40 DVKAPCVDCASVAENWVCLICYQVRCGRYI 69 (76)
Q Consensus 40 ~~~~~C~~C~~~~~~W~CL~Cg~v~CgR~~ 69 (76)
+....|..|...-..-+.+.||++.|.+-.
T Consensus 206 ~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i 235 (281)
T 2c2l_A 206 PDYLCGKISFELMREPCITPSGITYDRKDI 235 (281)
T ss_dssp CSTTBCTTTCSBCSSEEECSSCCEEETTHH
T ss_pred CcccCCcCcCCHhcCCeECCCCCEECHHHH
Confidence 355678888888777788889999887643
No 111
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.14 E-value=9.9 Score=16.84 Aligned_cols=16 Identities=19% Similarity=0.355 Sum_probs=9.9
Q ss_pred CCeeeecccCceeecC
Q psy14516 52 AENWVCLICYQVRCGR 67 (76)
Q Consensus 52 ~~~W~CL~Cg~v~CgR 67 (76)
...+.|..|+...-.+
T Consensus 7 ~k~~~C~~C~k~f~~~ 22 (36)
T 2els_A 7 GKIFTCEYCNKVFKFK 22 (36)
T ss_dssp CCCEECTTTCCEESSH
T ss_pred CCCEECCCCCceeCCH
Confidence 3456777777765443
No 112
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=22.99 E-value=25 Score=16.70 Aligned_cols=14 Identities=21% Similarity=0.451 Sum_probs=7.6
Q ss_pred CeeeecccCceeec
Q psy14516 53 ENWVCLICYQVRCG 66 (76)
Q Consensus 53 ~~W~CL~Cg~v~Cg 66 (76)
..+.|-.|+..+-.
T Consensus 11 k~~~C~~C~k~f~~ 24 (48)
T 2epr_A 11 KQVACEICGKIFRD 24 (48)
T ss_dssp CSEEETTTTEEESS
T ss_pred cCeeCCCCCcccCC
Confidence 44556666655443
No 113
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=22.94 E-value=30 Score=19.55 Aligned_cols=29 Identities=10% Similarity=-0.236 Sum_probs=20.2
Q ss_pred CCccccCcCCCCCCeeeecccCceeecCC
Q psy14516 40 DVKAPCVDCASVAENWVCLICYQVRCGRY 68 (76)
Q Consensus 40 ~~~~~C~~C~~~~~~W~CL~Cg~v~CgR~ 68 (76)
+....|.-|...-..-+.+.||++.|.+.
T Consensus 12 p~~~~CpI~~~~m~dPV~~~cGhtf~r~~ 40 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDPVRLPSGTVMDRSI 40 (85)
T ss_dssp CTTTBCTTTCSBCSSEEECTTSCEEEHHH
T ss_pred chheECcccCchhcCCeECCCCCEECHHH
Confidence 34566777777666667777888887654
No 114
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=22.82 E-value=54 Score=19.07 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=20.5
Q ss_pred CccccCcCCCCCCeeeecccCceeecC
Q psy14516 41 VKAPCVDCASVAENWVCLICYQVRCGR 67 (76)
Q Consensus 41 ~~~~C~~C~~~~~~W~CL~Cg~v~CgR 67 (76)
....|..|...-..-+-+.||+++|..
T Consensus 22 ~~~~C~IC~~~~~~p~~~~CgH~fC~~ 48 (116)
T 1rmd_A 22 KSISCQICEHILADPVETSCKHLFCRI 48 (116)
T ss_dssp HHTBCTTTCSBCSSEEECTTSCEEEHH
T ss_pred CCCCCCCCCcHhcCcEEcCCCCcccHH
Confidence 456688888776666668899998863
No 115
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.67 E-value=22 Score=15.55 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=12.2
Q ss_pred CeeeecccCceeecCC-CcchhccC
Q psy14516 53 ENWVCLICYQVRCGRY-IEEHSNEF 76 (76)
Q Consensus 53 ~~W~CL~Cg~v~CgR~-~~~Ha~~H 76 (76)
....|-.|+...-.++ -..|++.|
T Consensus 8 k~~~C~~C~k~f~~~~~l~~H~~~H 32 (36)
T 2elv_A 8 LLYDCHICERKFKNELDRDRHMLVH 32 (36)
T ss_dssp CCEECSSSCCEESSHHHHHHHHTTT
T ss_pred CCeECCCCCCccCCHHHHHHHHHHh
Confidence 3456666766554432 34454433
No 116
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=22.66 E-value=12 Score=15.11 Aligned_cols=8 Identities=25% Similarity=0.667 Sum_probs=3.8
Q ss_pred ecccCcee
Q psy14516 57 CLICYQVR 64 (76)
Q Consensus 57 CL~Cg~v~ 64 (76)
|-.||...
T Consensus 4 C~~C~k~f 11 (27)
T 1znf_A 4 CGLCERSF 11 (27)
T ss_dssp CSSSCCBC
T ss_pred CCCCCCcC
Confidence 44455444
No 117
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=22.33 E-value=60 Score=20.17 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=20.7
Q ss_pred CCccccCcCCCCCCeeeecccCceeecC
Q psy14516 40 DVKAPCVDCASVAENWVCLICYQVRCGR 67 (76)
Q Consensus 40 ~~~~~C~~C~~~~~~W~CL~Cg~v~CgR 67 (76)
+....|..|...-..-+-+.||+++|..
T Consensus 16 ~~~~~C~IC~~~~~~pv~~~CgH~fC~~ 43 (170)
T 3hcs_A 16 ESKYECPICLMALREAVQTPCGHRFCKA 43 (170)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEEEHH
T ss_pred CCCCCCCCCChhhcCcEECCCCCHHHHH
Confidence 4566788888776655667899998863
No 118
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=22.13 E-value=39 Score=19.81 Aligned_cols=30 Identities=10% Similarity=-0.187 Sum_probs=21.6
Q ss_pred CCccccCcCCCCCCeeeecccCceeecCCC
Q psy14516 40 DVKAPCVDCASVAENWVCLICYQVRCGRYI 69 (76)
Q Consensus 40 ~~~~~C~~C~~~~~~W~CL~Cg~v~CgR~~ 69 (76)
+....|.-|...-..-+.+.||++.|.+..
T Consensus 27 p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I 56 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPVRLPSGTIMDRSII 56 (100)
T ss_dssp STTTBCTTTCSBCSSEEEETTTEEEEHHHH
T ss_pred cHhhCCcCccCcccCCeECCCCCEEchHHH
Confidence 456678888877777777778888887543
No 119
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=21.93 E-value=43 Score=23.81 Aligned_cols=10 Identities=20% Similarity=0.434 Sum_probs=5.1
Q ss_pred CccccCcCCC
Q psy14516 41 VKAPCVDCAS 50 (76)
Q Consensus 41 ~~~~C~~C~~ 50 (76)
....|.+|+.
T Consensus 41 G~~vC~~CG~ 50 (345)
T 3k7a_M 41 GDVVCALCGL 50 (345)
T ss_dssp CSCCCSSSCC
T ss_pred CCEecCCCCe
Confidence 3445655553
No 120
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.60 E-value=17 Score=15.64 Aligned_cols=14 Identities=21% Similarity=0.707 Sum_probs=8.3
Q ss_pred CeeeecccCceeec
Q psy14516 53 ENWVCLICYQVRCG 66 (76)
Q Consensus 53 ~~W~CL~Cg~v~Cg 66 (76)
..+.|-.||...-.
T Consensus 6 k~~~C~~C~k~f~~ 19 (35)
T 2elx_A 6 SGYVCALCLKKFVS 19 (35)
T ss_dssp CSEECSSSCCEESS
T ss_pred CCeECCCCcchhCC
Confidence 34667777765544
No 121
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=21.57 E-value=33 Score=18.36 Aligned_cols=12 Identities=25% Similarity=0.996 Sum_probs=8.1
Q ss_pred CeeeecccCcee
Q psy14516 53 ENWVCLICYQVR 64 (76)
Q Consensus 53 ~~W~CL~Cg~v~ 64 (76)
+.|.|..|+...
T Consensus 12 D~WkC~~C~~~N 23 (46)
T 2c6a_A 12 DYWKCTSCNEMN 23 (46)
T ss_dssp GCEECTTTCCEE
T ss_pred ceEecccccccC
Confidence 667777777654
No 122
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.08 E-value=54 Score=17.97 Aligned_cols=24 Identities=25% Similarity=0.623 Sum_probs=20.8
Q ss_pred cccCcCCCCCCeeeecccCceeecC
Q psy14516 43 APCVDCASVAENWVCLICYQVRCGR 67 (76)
Q Consensus 43 ~~C~~C~~~~~~W~CL~Cg~v~CgR 67 (76)
..|..|.. .....|..|+.-.|+-
T Consensus 13 ~~C~vC~~-~~kY~CPrC~~~yCSl 36 (56)
T 2yqq_A 13 VVCVICLE-KPKYRCPACRVPYCSV 36 (56)
T ss_dssp CCCTTTCS-CCSEECTTTCCEESSH
T ss_pred CccCcCcC-CCeeeCCCCCCCeeCH
Confidence 35999999 8899999999988873
No 123
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=21.04 E-value=60 Score=18.29 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=17.4
Q ss_pred CccccCcCCCCCCeeeec-ccCceeec
Q psy14516 41 VKAPCVDCASVAENWVCL-ICYQVRCG 66 (76)
Q Consensus 41 ~~~~C~~C~~~~~~W~CL-~Cg~v~Cg 66 (76)
....|..|...-..-+-+ .||+++|.
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~fC~ 47 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHNYCS 47 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEH
T ss_pred CCCCcccCChhhCCcCEECCCCCHhhH
Confidence 345688888665545444 78888886
No 124
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=20.83 E-value=61 Score=18.50 Aligned_cols=26 Identities=23% Similarity=0.507 Sum_probs=17.2
Q ss_pred cccCcCCC-------CCCeeeecccCceeecCC
Q psy14516 43 APCVDCAS-------VAENWVCLICYQVRCGRY 68 (76)
Q Consensus 43 ~~C~~C~~-------~~~~W~CL~Cg~v~CgR~ 68 (76)
-+|.+|.. ....=.|..||.+.|-..
T Consensus 8 VKCp~C~niq~VFShA~tvV~C~~Cg~~L~~PT 40 (66)
T 1qxf_A 8 VKCPDCEHEQVIFDHPSTIVKCIICGRTVAEPT 40 (66)
T ss_dssp EECTTTCCEEEEESSCSSCEECSSSCCEEEECC
T ss_pred EECCCCCCceEEEecCceEEEcccCCCEEeecC
Confidence 45777773 233344999999998753
No 125
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=20.64 E-value=53 Score=23.29 Aligned_cols=28 Identities=29% Similarity=0.553 Sum_probs=22.6
Q ss_pred CCccccCcCCCCCCeeeecccCceeecC
Q psy14516 40 DVKAPCVDCASVAENWVCLICYQVRCGR 67 (76)
Q Consensus 40 ~~~~~C~~C~~~~~~W~CL~Cg~v~CgR 67 (76)
+....|.+|+...-.|+.+.=|..-|.+
T Consensus 43 ~~n~~c~dc~~~~p~w~s~~~g~~~c~~ 70 (368)
T 3jue_A 43 DGNAQCCDCREPAPEWASINLGVTLCIQ 70 (368)
T ss_dssp TTTTBCTTTCCBSCCEEETTTTEEECHH
T ss_pred CCcCcCCCCCCCCCCeEEecCCeEEcHh
Confidence 4677899999999999977777777654
No 126
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=20.52 E-value=19 Score=15.63 Aligned_cols=21 Identities=14% Similarity=0.251 Sum_probs=9.1
Q ss_pred eecccCceeecC-CCcchhccC
Q psy14516 56 VCLICYQVRCGR-YIEEHSNEF 76 (76)
Q Consensus 56 ~CL~Cg~v~CgR-~~~~Ha~~H 76 (76)
.|-.||...-.+ .-..|++.|
T Consensus 4 ~C~~C~k~f~~~~~L~~H~~~H 25 (32)
T 2kfq_A 4 ACPACPKRFMRSDALSKHIKTA 25 (32)
T ss_dssp SSSSSCTTHHHHHTTSSSTTSS
T ss_pred CCCCCCcccCCHHHHHHHHHHH
Confidence 345555544333 234454433
No 127
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=20.04 E-value=12 Score=15.14 Aligned_cols=11 Identities=18% Similarity=0.238 Sum_probs=5.5
Q ss_pred eecccCceeec
Q psy14516 56 VCLICYQVRCG 66 (76)
Q Consensus 56 ~CL~Cg~v~Cg 66 (76)
.|..||.....
T Consensus 4 ~C~~C~~~f~~ 14 (29)
T 2m0e_A 4 KCPHCDKKFNQ 14 (29)
T ss_dssp CCSSCCCCCCT
T ss_pred cCCCCCcccCC
Confidence 45555554443
Done!