RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14516
         (76 letters)



>d2g45a1 g.44.1.5 (A:173-285) Ubiquitin carboxyl-terminal
          hydrolase 5, UBP5 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 113

 Score = 39.2 bits (91), Expect = 4e-06
 Identities = 8/29 (27%), Positives = 11/29 (37%)

Query: 45 CVDCASVAENWVCLICYQVRCGRYIEEHS 73
          C  C      W+ L    + CGR   + S
Sbjct: 27 CSKCDMRENLWLNLTDGSILCGRRYFDGS 55


>d2uzga1 g.44.1.5 (A:36-130) Ubiquitin carboxyl-terminal hydrolase
          33, UBP33 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 95

 Score = 38.4 bits (89), Expect = 6e-06
 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 5/57 (8%)

Query: 24 DCPHTPLVAPVPQSGVDVKA--PCVDCASVAEN-WVCL--ICYQVRCGRYIEEHSNE 75
           CPH   V  + +  +  K+   C DC     N W CL   C  V CG    +HS  
Sbjct: 3  HCPHLDSVGEITKEDLIQKSLGTCQDCKVQGPNLWACLENRCSYVGCGESQVDHSTI 59


>d2idaa1 g.44.1.5 (A:1-102) Hypothetical protein RPA1320
          {Rhodopseudomonas palustris [TaxId: 1076]}
          Length = 102

 Score = 34.6 bits (79), Expect = 2e-04
 Identities = 13/56 (23%), Positives = 18/56 (32%), Gaps = 9/56 (16%)

Query: 25 CPHTPLVAPVPQSGVDVKAPCVDCASVAENWV----CLICYQVRC-GRYIEEHSNE 75
          C H   +  V  S       C +C  +   WV    C  C  V C      +H+  
Sbjct: 5  CRHVAGIRTVTPSA----LGCEECLKIGSPWVHLRICRTCGHVGCCDDSPHKHATR 56


>d1d8ca_ c.1.13.1 (A:) Malate synthase G {Escherichia coli [TaxId:
           562]}
          Length = 720

 Score = 23.4 bits (50), Expect = 3.6
 Identities = 7/42 (16%), Positives = 14/42 (33%), Gaps = 1/42 (2%)

Query: 30  LVAPVPQSGVDVKAPCVDCASVAENWVCLICYQVRCGRYIEE 71
           +V P      +V        +  E  + +    ++ G   EE
Sbjct: 386 IVKPKMHGPQEVAF-ANKLFTRIETMLGMAPNTLKMGIMDEE 426


>d1oaoc_ e.26.1.3 (C:) Bifunctional carbon monoxide
           dehydrogenase/acetyl-CoA synthase (CODH/ACS) alpha (ACS)
           subunit {Moorella thermoacetica [TaxId: 1525]}
          Length = 729

 Score = 22.4 bits (48), Expect = 7.5
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 38  GVDVKAPCVDCASVAENWVCLI 59
            VD    CV C S A N VC++
Sbjct: 499 TVDTFYSCVLCQSFAPNHVCIV 520


>d1sp3a_ a.138.1.3 (A:) Putative Cytochrome c {Shewanella
          oneidensis [TaxId: 70863]}
          Length = 442

 Score = 22.6 bits (47), Expect = 8.6
 Identities = 6/23 (26%), Positives = 11/23 (47%)

Query: 26 PHTPLVAPVPQSGVDVKAPCVDC 48
          PH  ++     +G +V   C+ C
Sbjct: 3  PHKDVLKGPFTTGSEVTTQCLTC 25


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.136    0.452 

Gapped
Lambda     K      H
   0.267   0.0571    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 282,263
Number of extensions: 9979
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 9
Length of query: 76
Length of database: 2,407,596
Length adjustment: 43
Effective length of query: 33
Effective length of database: 1,817,206
Effective search space: 59967798
Effective search space used: 59967798
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.2 bits)