BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14518
         (226 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4DLQ|A Chain A, Crystal Structure Of The Gain And Hormr Domains Of Cirl
           1LATROPHILIN 1 (Cl1)
          Length = 381

 Score = 40.0 bits (92), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 19/31 (61%)

Query: 103 SRSAFLSNWSTDGCELYSTNKTFTICECTHL 133
           S  + L  WST GC L  +NKT T C C+HL
Sbjct: 351 SERSMLGYWSTQGCRLVESNKTHTTCACSHL 381


>pdb|4DLO|A Chain A, Crystal Structure Of The Gain And Hormr Domains Of Brain
           Angiogenesis Inhibitor 3 (Bai3)
 pdb|4DLO|B Chain B, Crystal Structure Of The Gain And Hormr Domains Of Brain
           Angiogenesis Inhibitor 3 (Bai3)
          Length = 382

 Score = 35.4 bits (80), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 23/45 (51%)

Query: 101 DQSRSAFLSNWSTDGCELYSTNKTFTICECTHLTNFALLMRISEE 145
           D   +  L  WST GC+   T+ + T C C  L+ FA+L +   E
Sbjct: 330 DSKTNESLGTWSTQGCKTVLTDASHTKCLCDRLSTFAILAQQPRE 374


>pdb|1L8R|A Chain A, Structure Of The Retinal Determination Protein Dachshund
           Reveals A Dna-Binding Motif
 pdb|1L8R|B Chain B, Structure Of The Retinal Determination Protein Dachshund
           Reveals A Dna-Binding Motif
          Length = 101

 Score = 28.5 bits (62), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 6/79 (7%)

Query: 143 SEESAIDLEGMCLKILTYVGCAMSCICLVVSFLTFHLMKTLKSRYPRFVRDIRGLFAVSV 202
           +E   +DL G  +   T  GC + C+         HL+  L + Y +  R    L    V
Sbjct: 5   NECKXVDLRGAKVASFTVEGCELICLPQAFDLFLKHLVGGLHTVYTKLKR----LEITPV 60

Query: 203 VCSRYSRFVRGIRGLFAMM 221
           VC+     VR +RGL A+ 
Sbjct: 61  VCNVEQ--VRILRGLGAIQ 77


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.334    0.144    0.462 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,086,779
Number of Sequences: 62578
Number of extensions: 219741
Number of successful extensions: 539
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 537
Number of HSP's gapped (non-prelim): 4
length of query: 226
length of database: 14,973,337
effective HSP length: 95
effective length of query: 131
effective length of database: 9,028,427
effective search space: 1182723937
effective search space used: 1182723937
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 50 (23.9 bits)