Query psy14518
Match_columns 226
No_of_seqs 188 out of 1586
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 21:56:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14518.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14518hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4193|consensus 99.9 1.3E-30 2.8E-35 239.6 -15.4 169 1-192 407-580 (610)
2 KOG4564|consensus 99.9 7.2E-28 1.6E-32 213.8 -15.3 172 1-197 250-423 (473)
3 PF00002 7tm_2: 7 transmembran 99.9 9.9E-24 2.1E-28 175.5 0.0 149 1-172 93-242 (242)
4 KOG4289|consensus 99.7 1.8E-19 3.9E-24 171.8 -4.2 153 1-188 2247-2399(2531)
5 KOG4193|consensus 98.9 2.4E-09 5.3E-14 99.5 6.9 114 107-225 273-389 (610)
6 KOG4289|consensus 98.8 9.1E-09 2E-13 100.1 8.4 119 98-224 2110-2228(2531)
7 smart00303 GPS G-protein-coupl 98.6 5.3E-08 1.1E-12 61.0 4.3 45 100-144 4-48 (49)
8 PF01825 GPS: Latrophilin/CL-1 98.6 3.7E-08 8E-13 60.3 2.9 41 100-140 4-44 (44)
9 PF05462 Dicty_CAR: Slime mold 97.4 3.2E-09 7E-14 91.2 -25.1 75 2-78 97-174 (303)
10 PF00002 7tm_2: 7 transmembran 89.0 0.17 3.6E-06 41.7 0.9 43 155-197 3-45 (242)
11 PF02101 Ocular_alb: Ocular al 88.7 0.00016 3.5E-09 63.2 -17.8 70 17-88 151-222 (405)
12 PF01534 Frizzled: Frizzled/Sm 87.1 0.0031 6.7E-08 55.0 -11.0 73 18-90 134-209 (328)
13 PF11710 Git3: G protein-coupl 60.0 0.037 7.9E-07 45.0 -11.1 63 26-88 130-196 (201)
14 KOG4564|consensus 45.3 53 0.0011 30.3 5.6 41 157-197 149-189 (473)
No 1
>KOG4193|consensus
Probab=99.94 E-value=1.3e-30 Score=239.64 Aligned_cols=169 Identities=25% Similarity=0.502 Sum_probs=136.4
Q ss_pred CceeehhhhHhhhhccceeEEE-EEEEeeccceeEEEeeeeeeccc---CCCCCceeeecCCceeeEEeeeeEEEEEeee
Q psy14518 1 MRFQLYVMLIEVFEVERSRIKW-YYLFGYGFPLVVVGLCSFFFPGN---YGTKEYCWLAPNVMVLYSFILPIGFVIVINL 76 (226)
Q Consensus 1 eg~~ly~~~v~v~~~~~~~~~~-y~~~gwg~P~~~v~i~~~~~~~~---y~~~~~CWl~~~~~~~~~f~~Pv~~~l~~N~ 76 (226)
||+|||.+++++|..+..+.+. |+++|||+|+++|+++++++++. ||.+++||++.+.+.+|+|+||+.+++++|+
T Consensus 407 eg~hl~~~~v~vf~~~~~~~~l~~~~~gwg~Pavvv~Isa~~~~~~~~~~~~~~~CWl~~~~~~~~~F~GPv~~ii~~Ni 486 (610)
T KOG4193|consen 407 EGFHLYLLLVEVFRSRPRRRKLLYSLYGWGVPAVVVGVSALVDPDLEGQYGTPRVCWLDTQNGFIWSFLGPVTLIILVNI 486 (610)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHhhhhHHHHhheeEEeccCccccccCCceEEecCCceEEEEehHHHHHHHHHH
Confidence 8999999999999766665555 55899999999999999999988 9999999999999999999999999999999
Q ss_pred ehheeeeeeeeeccccccccccCCCcccccccCcccccceE-EEeeCCceEEEeeccCcceEEEeeecccccccccccch
Q psy14518 77 VFLSMTIVVMCRHANKTLAVKKPRDQSRSAFLSNWSTDGCE-LYSTNKTFTICECTHLTNFALLMRISEESAIDLEGMCL 155 (226)
Q Consensus 77 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~-l~llg~twi~c~c~hlt~f~vl~~~~~~~~~~~~~~~~ 155 (226)
++|+.+++++.+++..... +..+.... +|.+.... +.+||+||+ ||+++...+... .+.
T Consensus 487 ~~Fv~t~~~l~~~~~~~~~-----~~~~~~~~-~~~~~~l~L~~lLGlTW~---------fgi~s~~~~~~~-----v~~ 546 (610)
T KOG4193|consen 487 VMFVVTLKKLLRRLSKLQP-----IASKLENI-SLIRSALALLFLLGLTWI---------FGIFSWLPGTSV-----VFA 546 (610)
T ss_pred HHHHHHHHHHhhcccccCc-----chhhHHHH-HHHHHHHHHHHHHHHHHH---------HHHHHHhcccch-----HHH
Confidence 9999999998887643211 11111111 33333333 349999999 999965443332 459
Q ss_pred hhhHhhcHHHHHHHHHHHHHHHHHhhccccccchhhh
Q psy14518 156 KILTYVGCAMSCICLVVSFLTFHLMKTLKSRYPRFVR 192 (226)
Q Consensus 156 ~if~~~~~~~SlqGl~i~i~~~~~~~~vr~~~~~~~~ 192 (226)
|+|+++| ++||++||++++...+++|++++++.+
T Consensus 547 YlFti~N---alQG~fIFi~~cll~~kvr~~~~k~~~ 580 (610)
T KOG4193|consen 547 YLFTIFN---ALQGVFIFIFHCLLRKKVRKEYRKWLC 580 (610)
T ss_pred HHHHHHH---HhhhhHhhHhhhhhhHHHHHHHHHHhc
Confidence 9999999 999988888888888899999999987
No 2
>KOG4564|consensus
Probab=99.90 E-value=7.2e-28 Score=213.81 Aligned_cols=172 Identities=21% Similarity=0.292 Sum_probs=133.8
Q ss_pred CceeehhhhHhhhhccceeEEEEEEEeeccceeEEEeeeeeecccCCCCCceeeecCC-ceeeEEeeeeEEEEEeeeehh
Q psy14518 1 MRFQLYVMLIEVFEVERSRIKWYYLFGYGFPLVVVGLCSFFFPGNYGTKEYCWLAPNV-MVLYSFILPIGFVIVINLVFL 79 (226)
Q Consensus 1 eg~~ly~~~v~v~~~~~~~~~~y~~~gwg~P~~~v~i~~~~~~~~y~~~~~CWl~~~~-~~~~~f~~Pv~~~l~~N~~~~ 79 (226)
||+|||.+++.++.+|++++++|.++|||+|+++|++|+.++ .|.+|..||..+++ ...|+..||+.+.+++|+++|
T Consensus 250 EGlYLhtLlv~~~~ser~~~~~y~~iGWG~P~v~v~~Wai~r--~~~~d~~CW~~~~~~~~~WIi~gPi~~ai~vNf~fl 327 (473)
T KOG4564|consen 250 EGLYLHTLLVVAFFSERRYFWLYLLIGWGVPAVFVVVWAIVR--LYLEDTGCWDSNDTGHIWWIIRGPILLAILVNFIFL 327 (473)
T ss_pred HHHHHHHhhheeeccCccHHHHHHHHhhCCcHHHhhhHHhHh--eeeccccccccCCCcceEEEEeccHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999998 45556679999986 788999999999999999999
Q ss_pred eeeeeeeeeccccccccccCCCcccccccCcccccceEEE-eeCCceEEEeeccCcceEEEeeecccccccccccchhhh
Q psy14518 80 SMTIVVMCRHANKTLAVKKPRDQSRSAFLSNWSTDGCELY-STNKTFTICECTHLTNFALLMRISEESAIDLEGMCLKIL 158 (226)
Q Consensus 80 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~-llg~twi~c~c~hlt~f~vl~~~~~~~~~~~~~~~~~if 158 (226)
++++|++.+|.+.+.... .++.++. .++...++ ++|++.+. | .+.|++. .......+.-
T Consensus 328 inIvrILv~KLr~~~~~~--~~~y~K~-----vKaTLvLIPLfGI~~il--------f----~~~P~~~-~~~~v~~~~~ 387 (473)
T KOG4564|consen 328 INIVRILVTKLRASNASE--TDQYRKL-----VKATLVLIPLFGIHYIL--------F----AFRPDED-TLREVYLYFE 387 (473)
T ss_pred HHHHHHHHHHhcCccccc--hHHHHHH-----HHHHHHHHHHcCCeeEE--------E----EecCchH-HHHHHHHHHH
Confidence 999999999875432222 2333332 45555555 99999983 2 3444443 2223345555
Q ss_pred HhhcHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHH
Q psy14518 159 TYVGCAMSCICLVVSFLTFHLMKTLKSRYPRFVRDIRGL 197 (226)
Q Consensus 159 ~~~~~~~SlqGl~i~i~~~~~~~~vr~~~~~~~~~~~~~ 197 (226)
..++ |+||++++++||++|+|||.+.+|.+.+.+..
T Consensus 388 ~~L~---SfQGf~VAvlYCFlN~EVq~elrr~W~r~~~~ 423 (473)
T KOG4564|consen 388 LFLG---SFQGFFVAVLYCFLNGEVQAELRRKWSRWRLS 423 (473)
T ss_pred HHHH---hccchheehheeecCHHHHHHHHHHHHhcChh
Confidence 6677 99999999999999998877766655544333
No 3
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=99.87 E-value=9.9e-24 Score=175.54 Aligned_cols=149 Identities=23% Similarity=0.501 Sum_probs=0.0
Q ss_pred CceeehhhhHhhhhccceeEEEEEEEeeccceeEEEeeeeeecccCCCCCceeeecCCceeeEEeeeeEEEEEeeeehhe
Q psy14518 1 MRFQLYVMLIEVFEVERSRIKWYYLFGYGFPLVVVGLCSFFFPGNYGTKEYCWLAPNVMVLYSFILPIGFVIVINLVFLS 80 (226)
Q Consensus 1 eg~~ly~~~v~v~~~~~~~~~~y~~~gwg~P~~~v~i~~~~~~~~y~~~~~CWl~~~~~~~~~f~~Pv~~~l~~N~~~~~ 80 (226)
||++||+.+++++.++++++++|+++|||+|+++++++++.+.++||+ +.||++.+.+..|+|.+|+++++++|++++.
T Consensus 93 ~~~~l~~~~~~~~~~~~~~~~~~~~~gwg~P~~iv~i~~~~~~~~y~~-~~CWl~~~~~~~~~f~~P~~~~l~in~vi~~ 171 (242)
T PF00002_consen 93 EAFYLYRLLVKVFNSSRRRFWWYYLIGWGIPALIVVISVAVNSDGYGN-DNCWLSNDWGFIWAFVGPVLIILLINIVIFI 171 (242)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhheeEEEeecccchhhheeeeeeecCcceeeeeeeeeccccccc-ccccccCCCceEEEEEecccceecccchhhe
Confidence 899999999999877788899999999999999999999999778875 6799999888999999999999999999999
Q ss_pred eeeeeeeeccccccccccCCCcccccccCcccccceEE-EeeCCceEEEeeccCcceEEEeeecccccccccccchhhhH
Q psy14518 81 MTIVVMCRHANKTLAVKKPRDQSRSAFLSNWSTDGCEL-YSTNKTFTICECTHLTNFALLMRISEESAIDLEGMCLKILT 159 (226)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l-~llg~twi~c~c~hlt~f~vl~~~~~~~~~~~~~~~~~if~ 159 (226)
.+++++.++++.+. .++ +++.+. +..+..+.+ .++|.+|. ++++. ..++. ....+.|+|+
T Consensus 172 ~v~~~l~~~~~~~~-~~~-~~~~~~----~~~~~~~~L~~llg~~w~---------~~~~~-~~~~~---~~~~~~~lf~ 232 (242)
T PF00002_consen 172 LVLRVLVRKSRSSD-KSE-KKKRRK----KILRASLILLPLLGITWL---------FGILA-VSDSV---DSLVFQYLFA 232 (242)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeEEeehhhhhhhh-hhh-ccchhh----hHHHHHHHHHHHHHHHhe---------eeeee-ecccc---hHHHHHHHHH
Confidence 99998887654221 111 111111 112333344 49999999 88884 33321 1234689999
Q ss_pred hhcHHHHHHHHHH
Q psy14518 160 YVGCAMSCICLVV 172 (226)
Q Consensus 160 ~~~~~~SlqGl~i 172 (226)
++| |+||+++
T Consensus 233 i~n---slQG~~I 242 (242)
T PF00002_consen 233 ILN---SLQGFFI 242 (242)
T ss_dssp -------------
T ss_pred HHH---cCcceeC
Confidence 999 9999653
No 4
>KOG4289|consensus
Probab=99.71 E-value=1.8e-19 Score=171.82 Aligned_cols=153 Identities=24% Similarity=0.430 Sum_probs=120.6
Q ss_pred CceeehhhhHhhhhccceeEEEEEEEeeccceeEEEeeeeeecccCCCCCceeeecCCceeeEEeeeeEEEEEeeeehhe
Q psy14518 1 MRFQLYVMLIEVFEVERSRIKWYYLFGYGFPLVVVGLCSFFFPGNYGTKEYCWLAPNVMVLYSFILPIGFVIVINLVFLS 80 (226)
Q Consensus 1 eg~~ly~~~v~v~~~~~~~~~~y~~~gwg~P~~~v~i~~~~~~~~y~~~~~CWl~~~~~~~~~f~~Pv~~~l~~N~~~~~ 80 (226)
||+|+|+|+++ +.+..+|+.||++|||+|+++.+.+.+++ +.||++....++|+|.||+++++++|...+.
T Consensus 2247 ~gLhlYRml~e--~v~tg~mrfy~~vGwgvPa~itglavgld-------DfCwlS~h~~LiWsfagPigl~i~ms~~~~~ 2317 (2531)
T KOG4289|consen 2247 EGLHLYRMLTE--NVDTGPMRFYYLVGWGVPALITGLAVGLD-------DFCWLSPHDTLIWSFAGPIGLVILMSFYAAA 2317 (2531)
T ss_pred HHHHHHHHHhc--cCCCCceeEEEEeecchhhheeeeeeccc-------ceeecccchheeeeecccceeeehHHHHHHH
Confidence 79999999999 67788999999999999999999999875 7899999999999999999999999999888
Q ss_pred eeeeeeeeccccccccccCCCcccccccCcccccceEEEeeCCceEEEeeccCcceEEEeeecccccccccccchhhhHh
Q psy14518 81 MTIVVMCRHANKTLAVKKPRDQSRSAFLSNWSTDGCELYSTNKTFTICECTHLTNFALLMRISEESAIDLEGMCLKILTY 160 (226)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~l~llg~twi~c~c~hlt~f~vl~~~~~~~~~~~~~~~~~if~~ 160 (226)
..++.-+.+++.....|. ..+........+.+++.||+ ++++ ...+... .+.|++..
T Consensus 2318 lsa~vSc~~k~~~f~kK~--------~v~~lq~~fl~llllsatwl---------~~ll-~vn~~~l-----~fhyl~a~ 2374 (2531)
T KOG4289|consen 2318 LSARVSCHKKYQVFVKKG--------NVSVLQHSFLLLLLLSATWL---------LGLL-AVNPDPL-----EFHYLFAS 2374 (2531)
T ss_pred HHHHHhhhhhheeeeecc--------chhhhHHHHHHHHHHHHHHH---------HHHH-hcCCchH-----HHHHHHHH
Confidence 888766654432211111 11112233344558899999 8877 3333322 35889999
Q ss_pred hcHHHHHHHHHHHHHHHHHhhccccccc
Q psy14518 161 VGCAMSCICLVVSFLTFHLMKTLKSRYP 188 (226)
Q Consensus 161 ~~~~~SlqGl~i~i~~~~~~~~vr~~~~ 188 (226)
+. .+||.+++++.++++.++|+.++
T Consensus 2375 ~~---~lqg~~Vlll~cVl~~~~raa~~ 2399 (2531)
T KOG4289|consen 2375 II---GLQGPFVLLLWCVLNIEVRAALK 2399 (2531)
T ss_pred HH---HhhhHHHHHHHhhhcHHHHHhhc
Confidence 98 99999999999999999998877
No 5
>KOG4193|consensus
Probab=98.91 E-value=2.4e-09 Score=99.51 Aligned_cols=114 Identities=32% Similarity=0.584 Sum_probs=94.7
Q ss_pred ccCcccccceEEEeeCCceEEEeeccCcceEEEeeecccc-cccccccchhhhHhhcHHHHHHHHHHHHHHHHHhhcccc
Q psy14518 107 FLSNWSTDGCELYSTNKTFTICECTHLTNFALLMRISEES-AIDLEGMCLKILTYVGCAMSCICLVVSFLTFHLMKTLKS 185 (226)
Q Consensus 107 ~~~~w~~~~~~l~llg~twi~c~c~hlt~f~vl~~~~~~~-~~~~~~~~~~if~~~~~~~SlqGl~i~i~~~~~~~~vr~ 185 (226)
..+.|+..||.+.....+.+.|.|+|+|+|+++|+..... ..........+.++++|++|+.++++.++.+.+.|++|+
T Consensus 273 ~~~~ws~~gc~~~~~~~~~~~c~C~hltsFavlm~~~~~~~~~~~~~~~l~~i~~VG~~iSlvcL~lti~ty~~~~~l~~ 352 (610)
T KOG4193|consen 273 MGGYWSTEGCSLETSNETSTICACNHLTSFAVLMAHSDVAIEDAVLTLLLDILSTVGCIISLVCLLLTIATYLLFRKLQN 352 (610)
T ss_pred CCCccccCCceeeEeecCceEEEeccchhHHHhccccccccccchhHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 5778999999999667779999999999999999876542 222234556677899999999999999999999999999
Q ss_pred ccchhhhhHHHHHHHHHHHHhhhhhhcccccc-chh-hcccc
Q psy14518 186 RYPRFVRDIRGLFAVSVVCSRYSRFVRGIRGL-FAM-MCKEA 225 (226)
Q Consensus 186 ~~~~~~~~~~~~~~~s~~~~~~~~~~~g~~~~-~~~-~c~~~ 225 (226)
+..++|.++..+ +.+....|+.|+..+ .++ .|+++
T Consensus 353 ~~~~i~~~l~~~-----L~l~~l~fL~~~~~~~~~~~~C~~~ 389 (610)
T KOG4193|consen 353 DRTKIHINLCLC-----LFLAELLFLLGIDRTSTSVVLCIAA 389 (610)
T ss_pred hcchhHHHHHHH-----HHHHHHHHhcccccccCcccccHHH
Confidence 999999888777 677788889999888 665 68763
No 6
>KOG4289|consensus
Probab=98.84 E-value=9.1e-09 Score=100.10 Aligned_cols=119 Identities=28% Similarity=0.418 Sum_probs=102.1
Q ss_pred cCCCcccccccCcccccceEEEeeCCceEEEeeccCcceEEEeeecccccccccccchhhhHhhcHHHHHHHHHHHHHHH
Q psy14518 98 KPRDQSRSAFLSNWSTDGCELYSTNKTFTICECTHLTNFALLMRISEESAIDLEGMCLKILTYVGCAMSCICLVVSFLTF 177 (226)
Q Consensus 98 ~~~~~~~~~~~~~w~~~~~~l~llg~twi~c~c~hlt~f~vl~~~~~~~~~~~~~~~~~if~~~~~~~SlqGl~i~i~~~ 177 (226)
++.+..+++..+.|+..||.++..+.++..|+|||.++|+++|..++.+.. +...+.++++...++|+..+++.+++.
T Consensus 2110 kpiCV~wde~tG~WtARgcelv~rN~tHaaCqcnr~gsF~vlmd~s~re~g--~~~~l~~~t~a~~gvslaal~lt~~ll 2187 (2531)
T KOG4289|consen 2110 KPICVFWDEGTGGWTARGCELVGRNLTHAACQCNRTGSFAVLMDDSRRENG--EALPLKMTTYAAVGVSLAALLLTFLLL 2187 (2531)
T ss_pred cceEEEEcCCCCceeeccceeeccccceeeeeeccceeEEEEEccCccccc--ceehhhhhhHHHHHHHHHHHHHHHHHH
Confidence 345556778899999999999999999999999999999999998887743 345678999999999999999999988
Q ss_pred HHhhccccccchhhhhHHHHHHHHHHHHhhhhhhccccccchhhccc
Q psy14518 178 HLMKTLKSRYPRFVRDIRGLFAVSVVCSRYSRFVRGIRGLFAMMCKE 224 (226)
Q Consensus 178 ~~~~~vr~~~~~~~~~~~~~~~~s~~~~~~~~~~~g~~~~~~~~c~~ 224 (226)
...|..|...++++.++... +....+.|+-|+++ ++..|..
T Consensus 2188 ls~RsLksn~~~I~~~l~~A-----l~l~~L~Fv~gi~~-nq~~Ctv 2228 (2531)
T KOG4289|consen 2188 LSLRSLKSNSHGIHFNLAAA-----LGLAQLVFVLGINQ-NQFYCTV 2228 (2531)
T ss_pred HHHHHHhhcchhhhhHHHHH-----HhHHHHHhhhhccc-CchhhHH
Confidence 88899999999999887776 66778889999999 7777753
No 7
>smart00303 GPS G-protein-coupled receptor proteolytic site domain. Present in latrophilin/CL-1, sea urchin REJ and polycystin.
Probab=98.63 E-value=5.3e-08 Score=60.99 Aligned_cols=45 Identities=44% Similarity=0.737 Sum_probs=37.1
Q ss_pred CCcccccccCcccccceEEEeeCCceEEEeeccCcceEEEeeecc
Q psy14518 100 RDQSRSAFLSNWSTDGCELYSTNKTFTICECTHLTNFALLMRISE 144 (226)
Q Consensus 100 ~~~~~~~~~~~w~~~~~~l~llg~twi~c~c~hlt~f~vl~~~~~ 144 (226)
.+..++...+.|+..||.+.....+.+.|+|||||+|+++++..+
T Consensus 4 ~Cv~W~~~~~~W~~~GC~~~~~~~~~~~C~CnHlT~Favl~~~~p 48 (49)
T smart00303 4 ICVFWDESSGEWSTRGCELLETNSTHTTCSCNHLTTFAVLMDVPP 48 (49)
T ss_pred EEEEecCCCCCCccccCEEEeCCCCEEEEEEEccceEEEeEEecC
Confidence 344556666889999999986666999999999999999987654
No 8
>PF01825 GPS: Latrophilin/CL-1-like GPS domain; InterPro: IPR000203 This domain has been termed the GPS domain (for GPCR proteolytic site), because it contains a cleavage site in O97830 from SWISSPROT latrophilin []. However this region in latrophilin is found in many otherwise unrelated cell surface receptors []. There is no evidence currently that this domain provides a cleavage site in any of the other receptors. However the peptide bond that is cleaved in latrophilin is between Leu and Thr residues that are conserved in some of the other receptors []. GPS domains are about 50 residues long and contain either 2 or 4 cysteine residues that are likely to form disulphide bridges. Based on conservation of these cysteines the following pairing can be predicted. +-----------------+ | | +-----------------+---------------+ | | | | | XXXCXXXXXXXXXXXXXXXXXCXXXXXXXXXXXXXXXCXCXXLTXXXXXXX ^ cleavage site ; GO: 0007218 neuropeptide signaling pathway, 0016020 membrane; PDB: 4DLQ_B 4DLO_B.
Probab=98.59 E-value=3.7e-08 Score=60.27 Aligned_cols=41 Identities=34% Similarity=0.752 Sum_probs=33.2
Q ss_pred CCcccccccCcccccceEEEeeCCceEEEeeccCcceEEEe
Q psy14518 100 RDQSRSAFLSNWSTDGCELYSTNKTFTICECTHLTNFALLM 140 (226)
Q Consensus 100 ~~~~~~~~~~~w~~~~~~l~llg~twi~c~c~hlt~f~vl~ 140 (226)
.+..+++..+.|+.+||.+.....+.+.|+|+|||+||++|
T Consensus 4 ~C~~Wd~~~~~W~~~GC~~~~~~~~~~~C~C~HlT~Favlm 44 (44)
T PF01825_consen 4 QCVYWDEGTGSWSSDGCQVVESSNSHVTCSCNHLTSFAVLM 44 (44)
T ss_dssp EEEEEETTTEEEE-TTEEEEEEETTEEEEEECC-SEEEEEE
T ss_pred EEEEeeCCCCCCCcccccEecccCCCEEEEeeCCCcEeEeC
Confidence 34456677888999999998778889999999999999986
No 9
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=97.38 E-value=3.2e-09 Score=91.23 Aligned_cols=75 Identities=24% Similarity=0.605 Sum_probs=50.5
Q ss_pred ceeehhhhHhhhhccceeEEEEEEEeeccceeEEEeeeeeecccCCC-CCceeeecCCc--eeeEEeeeeEEEEEeeeeh
Q psy14518 2 RFQLYVMLIEVFEVERSRIKWYYLFGYGFPLVVVGLCSFFFPGNYGT-KEYCWLAPNVM--VLYSFILPIGFVIVINLVF 78 (226)
Q Consensus 2 g~~ly~~~v~v~~~~~~~~~~y~~~gwg~P~~~v~i~~~~~~~~y~~-~~~CWl~~~~~--~~~~f~~Pv~~~l~~N~~~ 78 (226)
++++|+.+++.....++..++|++++||+|+++..+.... +.||. ++.||++.+.. .+..|++|+.+++.++.++
T Consensus 97 A~nly~~~~~~~~~~~k~e~~Y~l~~wGiPli~a~i~l~~--~~~g~~G~WCWI~~~~~~~r~~lfY~Pl~ii~~~~~il 174 (303)
T PF05462_consen 97 AFNLYLTFVKRYDELEKLEKYYHLVCWGIPLIPAVIPLIG--NDYGPAGNWCWIKPEWDVWRFALFYIPLWIIIIISAIL 174 (303)
T ss_pred HHHhhheeEEcCccHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCCCCCCceeecCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 5678888776554334445779999999999976665543 35653 46899998642 2346899987655555443
No 10
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=89.05 E-value=0.17 Score=41.70 Aligned_cols=43 Identities=33% Similarity=0.682 Sum_probs=8.4
Q ss_pred hhhhHhhcHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHH
Q psy14518 155 LKILTYVGCAMSCICLVVSFLTFHLMKTLKSRYPRFVRDIRGL 197 (226)
Q Consensus 155 ~~if~~~~~~~SlqGl~i~i~~~~~~~~vr~~~~~~~~~~~~~ 197 (226)
+.+.++++|++|+.++++.++.+...|+.|+.-.+.|.+....
T Consensus 3 l~~i~~vg~~~Si~~ll~~i~~~~~~r~lr~~~~~i~~~l~~s 45 (242)
T PF00002_consen 3 LSIISYVGCSLSIICLLLTIITYLLFRKLRSFRNKIHLNLCLS 45 (242)
T ss_dssp HHHHHHHHHH---------------------------------
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhHHH
Confidence 5678899999999999999998988898888777777655444
No 11
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=88.70 E-value=0.00016 Score=63.17 Aligned_cols=70 Identities=17% Similarity=0.283 Sum_probs=49.1
Q ss_pred ceeEEEEEEEeeccceeEEEeeeeeecccCCCCCceeeecCC--ceeeEEeeeeEEEEEeeeehheeeeeeeee
Q psy14518 17 RSRIKWYYLFGYGFPLVVVGLCSFFFPGNYGTKEYCWLAPNV--MVLYSFILPIGFVIVINLVFLSMTIVVMCR 88 (226)
Q Consensus 17 ~~~~~~y~~~gwg~P~~~v~i~~~~~~~~y~~~~~CWl~~~~--~~~~~f~~Pv~~~l~~N~~~~~~~~~~l~~ 88 (226)
+..++.|.+++||.|++.++....+- .|-+.+.|==..+. +.+-.-++|++++++.|-++|..+.+.+-+
T Consensus 151 ~~~~~lYH~~aWgl~~lL~~~Gl~~L--y~Ps~~~Ce~~l~~alphYvttY~PlllVlvaNPiLy~~a~~~V~~ 222 (405)
T PF02101_consen 151 RSTIWLYHMMAWGLPALLCAEGLAML--YYPSISRCESGLEHALPHYVTTYIPLLLVLVANPILYIKAVRAVAS 222 (405)
T ss_pred CcchhHHHHHHHHHHHHHHHhcccee--ecCCHHhhhhhhhhcchhHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 45578899999999999877666653 23233456211111 345567899999999999999998776544
No 12
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=87.12 E-value=0.0031 Score=54.98 Aligned_cols=73 Identities=16% Similarity=0.257 Sum_probs=53.7
Q ss_pred eeEEEEEEEeeccceeEEEeeeeeec-ccCCCCCceeeecCCc--eeeEEeeeeEEEEEeeeehheeeeeeeeecc
Q psy14518 18 SRIKWYYLFGYGFPLVVVGLCSFFFP-GNYGTKEYCWLAPNVM--VLYSFILPIGFVIVINLVFLSMTIVVMCRHA 90 (226)
Q Consensus 18 ~~~~~y~~~gwg~P~~~v~i~~~~~~-~~y~~~~~CWl~~~~~--~~~~f~~Pv~~~l~~N~~~~~~~~~~l~~~~ 90 (226)
++-..+.+++|++|++.+++..+.+. |+..-.+.|++.+.+. ..+...+|..+.+++...++..-...+.|.+
T Consensus 134 ~~s~yfH~~aW~iP~~~ti~vL~~~~VdgD~ltGiC~Vg~~~~~~l~~fvl~Pl~i~l~iG~~fL~~G~~~l~rir 209 (328)
T PF01534_consen 134 KKSSYFHLVAWGIPAVLTIAVLALRKVDGDELTGICFVGNQNPSALRGFVLAPLFIYLLIGTVFLLAGFVSLFRIR 209 (328)
T ss_pred hhcchhhhHHhhhhHHHHHHHHHhcccccccccceeEEeCCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 34556899999999998877776642 3332346799998763 4466889999999999988887766665543
No 13
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=60.02 E-value=0.037 Score=44.96 Aligned_cols=63 Identities=16% Similarity=0.266 Sum_probs=40.2
Q ss_pred EeeccceeEEEeeeee-ecccCCC-CCceeeecCC--ceeeEEeeeeEEEEEeeeehheeeeeeeee
Q psy14518 26 FGYGFPLVVVGLCSFF-FPGNYGT-KEYCWLAPNV--MVLYSFILPIGFVIVINLVFLSMTIVVMCR 88 (226)
Q Consensus 26 ~gwg~P~~~v~i~~~~-~~~~y~~-~~~CWl~~~~--~~~~~f~~Pv~~~l~~N~~~~~~~~~~l~~ 88 (226)
+.+++|++...+...- +.+.|+. +..||++.+. .-++.-.+|..++.+..+++...+...+++
T Consensus 130 ~~~~~~~~~~~la~i~~~~~~Y~~~g~WCWi~~~~~~~Rl~l~y~~~~~~~~~~i~iY~~if~~lrr 196 (201)
T PF11710_consen 130 IWILVPLLLASLAFIGLGGPGYGPAGAWCWIPSRYEWYRLWLHYIWRFIIIFAIIIIYIAIFFYLRR 196 (201)
T ss_pred HHHHHHHHHHHHHHhccccCcccccCcEEEECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3457777766554333 3456764 3579999876 235667788888777777766666555444
No 14
>KOG4564|consensus
Probab=45.27 E-value=53 Score=30.31 Aligned_cols=41 Identities=22% Similarity=0.362 Sum_probs=35.5
Q ss_pred hhHhhcHHHHHHHHHHHHHHHHHhhccccccchhhhhHHHH
Q psy14518 157 ILTYVGCAMSCICLVVSFLTFHLMKTLKSRYPRFVRDIRGL 197 (226)
Q Consensus 157 if~~~~~~~SlqGl~i~i~~~~~~~~vr~~~~~~~~~~~~~ 197 (226)
+..++|.++|+..|+++++++...|+.|=.-..+|.++-..
T Consensus 149 ~lytvGyslSl~sL~vAl~If~~FR~L~CtRn~IH~nLF~S 189 (473)
T KOG4564|consen 149 ILYTVGYSLSLVSLLVALIIFLYFRSLHCTRNYIHMNLFAS 189 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHH
Confidence 45578888999999999999999999998888899887666
Done!