Query psy14518
Match_columns 226
No_of_seqs 188 out of 1586
Neff 8.4
Searched_HMMs 29240
Date Fri Aug 16 21:57:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14518.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14518hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dlo_A Brain-specific angiogen 98.0 1.1E-05 3.7E-10 70.6 6.8 40 107-146 336-375 (382)
2 4dlq_A Latrophilin-1; GAIN dom 95.3 0.017 5.9E-07 50.1 5.0 72 61-133 303-381 (381)
3 3bmz_A Putative uncharacterize 15.7 60 0.002 24.4 1.5 19 40-58 23-41 (199)
4 3b71_D T-cell surface glycopro 8.1 76 0.0026 15.8 -0.1 6 127-132 17-22 (26)
5 2zz8_A LIPL32 protein; outer-m 7.7 1.7E+02 0.006 22.7 1.7 14 20-34 57-70 (241)
6 2lez_A Secreted effector prote 4.2 7.7E+02 0.026 17.8 3.3 35 166-200 13-47 (145)
7 1afo_A Glycophorin A; integral 3.1 8E+02 0.027 13.5 2.5 26 155-185 14-39 (40)
8 2knc_B Integrin beta-3; transm 3.0 1.1E+03 0.037 14.9 3.4 29 166-194 22-51 (79)
9 3pes_A Uncharacterized protein 2.9 1.1E+03 0.038 14.8 3.0 34 29-62 14-49 (85)
10 2yc2_A IFT25, intraflagellar t 2.6 8.8E+02 0.03 16.7 2.4 19 47-65 35-53 (139)
No 1
>4dlo_A Brain-specific angiogenesis inhibitor 3; GAIN domain, includes GPS motif, autoproteolytic fold, extra signaling protein; HET: NAG FUL; 2.30A {Homo sapiens}
Probab=97.98 E-value=1.1e-05 Score=70.62 Aligned_cols=40 Identities=38% Similarity=0.741 Sum_probs=33.7
Q ss_pred ccCcccccceEEEeeCCceEEEeeccCcceEEEeeecccc
Q psy14518 107 FLSNWSTDGCELYSTNKTFTICECTHLTNFALLMRISEES 146 (226)
Q Consensus 107 ~~~~w~~~~~~l~llg~twi~c~c~hlt~f~vl~~~~~~~ 146 (226)
..+.|++.||.+...+.+++.|.|||||+||+||+..+..
T Consensus 336 ~~g~Ws~~GC~~~~~~~~~t~C~C~Hlt~FavLm~~~~~~ 375 (382)
T 4dlo_A 336 SLGTWSTQGCKTVLTDASHTKCLCDRLSTFAILAQQPREH 375 (382)
T ss_dssp TTCEEECTTEEEEEEETTEEEEEESSCSEEEEEEECC---
T ss_pred CCCCccccccEEEEeCCCEEEEECCCCchHHhhccccchh
Confidence 3479999999999778999999999999999999876553
No 2
>4dlq_A Latrophilin-1; GAIN domain, includes the GPS motif, hormone binding domain, autoproteolysis, A-latrotoxin, extracellular domain; HET: NAG; 1.85A {Rattus norvegicus}
Probab=95.32 E-value=0.017 Score=50.11 Aligned_cols=72 Identities=26% Similarity=0.407 Sum_probs=47.7
Q ss_pred eeEEeeeeEEEEEeee---ehheeeeeeeeeccccccccccCCCcccc----cccCcccccceEEEeeCCceEEEeeccC
Q psy14518 61 LYSFILPIGFVIVINL---VFLSMTIVVMCRHANKTLAVKKPRDQSRS----AFLSNWSTDGCELYSTNKTFTICECTHL 133 (226)
Q Consensus 61 ~~~f~~Pv~~~l~~N~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~w~~~~~~l~llg~twi~c~c~hl 133 (226)
-.....+|+.+.+-|. .-+...+.+.++|.+.... .++.+..++ ...+.|++.||.+...+.++++|.||||
T Consensus 303 ~~~lnS~Vvs~sv~~~~~~~~L~~pV~itf~h~~~~~~-~~~~CvfW~~~~~~~~G~Ws~~GC~~~~~~~~~t~C~C~HL 381 (381)
T 4dlq_A 303 SLVVNSQVIAASINKESSRVFLMDPVIFTVAHLEAKNH-FNANCSFWNYSERSMLGYWSTQGCRLVESNKTHTTCACSHL 381 (381)
T ss_dssp SEEECSCEEEEEESSTTCCCEEEEEEEEEEECSCCTTE-EEEEEEEEEECTTTCCEEEECTTEEEEEECSSEEEEEEEEC
T ss_pred ceeeecceEEEEecCCCCcccCCCCEEEEEEecCCCCC-CcccceecccCCCCCCCCCCCCCeEEeeeCCCEEEEeCCCC
Confidence 4556777777777663 3355666667776532111 112233332 3357899999999988999999999997
No 3
>3bmz_A Putative uncharacterized protein; violacein, biosynthetic protein; HET: PG4 PGE; 1.21A {Chromobacterium violaceum} PDB: 2zf3_A 2zf4_A*
Probab=15.73 E-value=60 Score=24.36 Aligned_cols=19 Identities=26% Similarity=0.639 Sum_probs=13.3
Q ss_pred eeecccCCCCCceeeecCC
Q psy14518 40 FFFPGNYGTKEYCWLAPNV 58 (226)
Q Consensus 40 ~~~~~~y~~~~~CWl~~~~ 58 (226)
-..++.--+.+|||+.+..
T Consensus 23 PMq~dD~iTSGYCWFDY~r 41 (199)
T 3bmz_A 23 PMLPDDQLTSGYCWFDYER 41 (199)
T ss_dssp SCCTTCCCEEEEEEEETTT
T ss_pred CCCcccccccceeeeeccc
Confidence 3455555566799999875
No 4
>3b71_D T-cell surface glycoprotein CD4; four-helix bundle, protein-protein complex, ATP-binding, CEL junction, kinase, nucleotide-binding, phosphorylation; 2.82A {Homo sapiens}
Probab=8.06 E-value=76 Score=15.79 Aligned_cols=6 Identities=50% Similarity=1.674 Sum_probs=2.6
Q ss_pred EEeecc
Q psy14518 127 ICECTH 132 (226)
Q Consensus 127 ~c~c~h 132 (226)
+|.|.|
T Consensus 17 TCqC~~ 22 (26)
T 3b71_D 17 TCQCPH 22 (26)
T ss_pred cccCCc
Confidence 344443
No 5
>2zz8_A LIPL32 protein; outer-membrane protein, unknown function; 2.01A {Leptospira interrogans} PDB: 3frl_A* 2wfk_A
Probab=7.66 E-value=1.7e+02 Score=22.70 Aligned_cols=14 Identities=43% Similarity=0.878 Sum_probs=11.2
Q ss_pred EEEEEEEeeccceeE
Q psy14518 20 IKWYYLFGYGFPLVV 34 (226)
Q Consensus 20 ~~~y~~~gwg~P~~~ 34 (226)
-+.||++.| +|+++
T Consensus 57 KkaYYLYvW-VPa~i 70 (241)
T 2zz8_A 57 KKAYYLYVW-IPAVI 70 (241)
T ss_dssp EEEEEEEEE-ECSCB
T ss_pred cceEEEEEE-eeccc
Confidence 467999999 57775
No 6
>2lez_A Secreted effector protein PIPB2; structural genomics, northeast structural genomics consortiu bacterial effector, virulence factor; NMR {Salmonella enterica subsp}
Probab=4.20 E-value=7.7e+02 Score=17.83 Aligned_cols=35 Identities=11% Similarity=0.125 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHhhccccccchhhhhHHHHHHH
Q psy14518 166 SCICLVVSFLTFHLMKTLKSRYPRFVRDIRGLFAV 200 (226)
Q Consensus 166 SlqGl~i~i~~~~~~~~vr~~~~~~~~~~~~~~~~ 200 (226)
|.||++=.|+-|+.+..||++..+..+.+...++.
T Consensus 13 sPqgi~E~IiNFFT~ggvrr~n~~~y~e~~e~mt~ 47 (145)
T 2lez_A 13 SPKTILEYIINFFTCGGIRRRNETQYQELIETMAE 47 (145)
T ss_dssp CHHHHHHHHHHHHHHCCCSSSHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHH
Confidence 78998888988999999999888888777666433
No 7
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=3.11 E-value=8e+02 Score=13.52 Aligned_cols=26 Identities=19% Similarity=0.131 Sum_probs=11.8
Q ss_pred hhhhHhhcHHHHHHHHHHHHHHHHHhhcccc
Q psy14518 155 LKILTYVGCAMSCICLVVSFLTFHLMKTLKS 185 (226)
Q Consensus 155 ~~if~~~~~~~SlqGl~i~i~~~~~~~~vr~ 185 (226)
+.++.... ...|- .+++.++-|++++
T Consensus 14 lII~~vma---GiIG~--IllI~y~I~rl~K 39 (40)
T 1afo_A 14 LIIFGVMA---GVIGT--ILLISYGIRRLIK 39 (40)
T ss_dssp HHHHHHHH---HHHHH--HHHHHHHHHHHSC
T ss_pred HHHHHHHH---HHHHH--HHHHHHHHHHHhh
Confidence 34444444 55663 3333444444443
No 8
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=3.04 E-value=1.1e+03 Score=14.89 Aligned_cols=29 Identities=14% Similarity=0.186 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHhh-ccccccchhhhhH
Q psy14518 166 SCICLVVSFLTFHLMK-TLKSRYPRFVRDI 194 (226)
Q Consensus 166 SlqGl~i~i~~~~~~~-~vr~~~~~~~~~~ 194 (226)
-+.|+++.++.-++.. .-|++++|.-+..
T Consensus 22 lliGllllliwk~~~~i~DrrE~~kFEkE~ 51 (79)
T 2knc_B 22 LLIGLAALLIWKLLITIHDRKEFAKFEEER 51 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455544444333322 4566666666443
No 9
>3pes_A Uncharacterized protein GP49; PSI2, structural genomics, protein structure initiative, MID center for structural genomics, MCSG; 1.30A {Pseudomonas phage yua}
Probab=2.94 E-value=1.1e+03 Score=14.85 Aligned_cols=34 Identities=24% Similarity=0.304 Sum_probs=0.0
Q ss_pred ccceeEEEeeeeeec--ccCCCCCceeeecCCceee
Q psy14518 29 GFPLVVVGLCSFFFP--GNYGTKEYCWLAPNVMVLY 62 (226)
Q Consensus 29 g~P~~~v~i~~~~~~--~~y~~~~~CWl~~~~~~~~ 62 (226)
|+|.+++.-...-.. .+-+-+++|.+....-.-|
T Consensus 14 GIPCLI~V~~~~~Y~P~~~s~~~~~~Y~~e~~~~~W 49 (85)
T 3pes_A 14 GIPCLIVVTYWEPYVPAKVSGPPEYCYPAEGGCGEW 49 (85)
T ss_dssp TEEEEEEEEEEECCBCCBCSSCGGGCBCCBCCEEEE
T ss_pred CCceEEEEeeccccCCCCCCCCccccccCCCCccce
No 10
>2yc2_A IFT25, intraflagellar transport protein 25; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_A
Probab=2.59 E-value=8.8e+02 Score=16.69 Aligned_cols=19 Identities=11% Similarity=0.347 Sum_probs=0.0
Q ss_pred CCCCceeeecCCceeeEEe
Q psy14518 47 GTKEYCWLAPNVMVLYSFI 65 (226)
Q Consensus 47 ~~~~~CWl~~~~~~~~~f~ 65 (226)
|+++.||-+.+....|..+
T Consensus 35 g~~~T~W~s~g~~pq~i~I 53 (139)
T 2yc2_A 35 GKDNTFWVTTGMFPQEFVL 53 (139)
T ss_dssp SCTTCCEECCSSSCEEEEE
T ss_pred CCCCCEEeCCCCCCeEEEE
Done!