Query psy14518
Match_columns 226
No_of_seqs 188 out of 1586
Neff 8.4
Searched_HMMs 13730
Date Fri Aug 16 21:57:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14518.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/14518hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ftxa1 d.300.1.1 (A:133-221) 31.9 7.7 0.00056 23.1 1.1 13 46-58 31-43 (89)
2 d1o0ea_ d.3.1.1 (A:) Ervatamin 4.9 2.8E+02 0.02 18.5 3.5 32 21-57 157-190 (208)
3 d1jb0i_ f.23.17.1 (I:) Subunit 4.0 13 0.00093 19.1 -3.5 11 26-36 18-28 (38)
4 d1w7ja1 b.34.3.1 (A:5-62) Myos 3.4 3E+02 0.022 15.1 2.0 17 45-62 2-18 (58)
5 d2ayxa2 c.23.1.6 (A:700-816) S 3.4 60 0.0043 21.2 -1.5 15 48-62 6-20 (117)
6 d1l8na2 d.92.2.2 (A:4-142) alp 3.2 1.2E+02 0.009 19.7 0.0 9 50-58 3-11 (139)
7 d1khqa_ d.3.1.1 (A:) Papain {P 2.8 5.2E+02 0.038 16.8 3.4 33 21-58 159-193 (212)
8 d1cxya_ d.120.1.1 (A:) Cytochr 2.7 2.3E+02 0.017 16.4 1.0 10 49-58 16-25 (81)
9 d1mj4a_ d.120.1.1 (A:) Sulfite 2.5 3E+02 0.022 15.7 1.3 10 49-58 17-26 (80)
10 d2daqa1 b.34.9.2 (A:8-104) His 2.4 2.6E+02 0.019 16.5 1.0 13 46-58 47-59 (97)
No 1
>d2ftxa1 d.300.1.1 (A:133-221) Kinetochore protein Spc25 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=31.92 E-value=7.7 Score=23.14 Aligned_cols=13 Identities=23% Similarity=0.989 Sum_probs=10.5
Q ss_pred CCCCCceeeecCC
Q psy14518 46 YGTKEYCWLAPNV 58 (226)
Q Consensus 46 y~~~~~CWl~~~~ 58 (226)
+|+++.||+....
T Consensus 31 fgddsrcwievam 43 (89)
T d2ftxa1 31 FGDDSRCWIEVAM 43 (89)
T ss_dssp ESSSSSEEEEECS
T ss_pred ecCCCceEEEEee
Confidence 7888999998643
No 2
>d1o0ea_ d.3.1.1 (A:) Ervatamin C {East indian rosebay (Ervatamia coronaria) [TaxId: 52861]}
Probab=4.95 E-value=2.8e+02 Score=18.52 Aligned_cols=32 Identities=16% Similarity=0.164 Sum_probs=20.7
Q ss_pred EEEEEEeeccceeEEEeeeeeec--ccCCCCCceeeecC
Q psy14518 21 KWYYLFGYGFPLVVVGLCSFFFP--GNYGTKEYCWLAPN 57 (226)
Q Consensus 21 ~~y~~~gwg~P~~~v~i~~~~~~--~~y~~~~~CWl~~~ 57 (226)
..-.++||+-+..+ +-+. .+.|++.++||+.+
T Consensus 157 Hav~iVGy~~~ywi-----irNSWG~~WGd~Gy~~I~~~ 190 (208)
T d1o0ea_ 157 HGVTIVGYQANYWI-----VRNSWGRYWGEKGYIRMLRV 190 (208)
T ss_dssp EEEEEEEECSSEEE-----EECSBCTTSTBTTEEEEECC
T ss_pred cEEEEEeeecceEE-----EECCCCCCcccCCeEEEEcc
Confidence 34578899988433 2221 24567789999874
No 3
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=3.99 E-value=13 Score=19.15 Aligned_cols=11 Identities=36% Similarity=0.628 Sum_probs=7.5
Q ss_pred EeeccceeEEE
Q psy14518 26 FGYGFPLVVVG 36 (226)
Q Consensus 26 ~gwg~P~~~v~ 36 (226)
+||+.|+++.+
T Consensus 18 v~wl~p~vvMg 28 (38)
T d1jb0i_ 18 VCWLMPTVVMG 28 (38)
T ss_dssp HHTHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 57888876544
No 4
>d1w7ja1 b.34.3.1 (A:5-62) Myosin S1 fragment, N-terminal domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}
Probab=3.41 E-value=3e+02 Score=15.08 Aligned_cols=17 Identities=12% Similarity=0.348 Sum_probs=11.7
Q ss_pred cCCCCCceeeecCCceee
Q psy14518 45 NYGTKEYCWLAPNVMVLY 62 (226)
Q Consensus 45 ~y~~~~~CWl~~~~~~~~ 62 (226)
.|....+||+.... ..|
T Consensus 2 lY~kgtRvWiPd~e-~vW 18 (58)
T d1w7ja1 2 LYTKYARVWIPDPE-EVW 18 (58)
T ss_dssp GCCTTCEEEEEETT-TEE
T ss_pred ccccCcEEEEECcc-ccE
Confidence 36667789998764 555
No 5
>d2ayxa2 c.23.1.6 (A:700-816) Sensor kinase protein RcsC {Escherichia coli [TaxId: 562]}
Probab=3.37 E-value=60 Score=21.24 Aligned_cols=15 Identities=33% Similarity=0.667 Sum_probs=10.7
Q ss_pred CCCceeeecCCceee
Q psy14518 48 TKEYCWLAPNVMVLY 62 (226)
Q Consensus 48 ~~~~CWl~~~~~~~~ 62 (226)
++..||+...+..+-
T Consensus 6 ~gk~cWL~iRNa~Le 20 (117)
T d2ayxa2 6 SGKRCWLAVRNASLC 20 (117)
T ss_dssp TTEEEEEECCCHHHH
T ss_pred cCcEeehhhhHHHHH
Confidence 356899999875443
No 6
>d1l8na2 d.92.2.2 (A:4-142) alpha-D-glucuronidase, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=3.20 E-value=1.2e+02 Score=19.71 Aligned_cols=9 Identities=44% Similarity=0.940 Sum_probs=6.9
Q ss_pred CceeeecCC
Q psy14518 50 EYCWLAPNV 58 (226)
Q Consensus 50 ~~CWl~~~~ 58 (226)
+.|||++..
T Consensus 3 ~~~WLrY~~ 11 (139)
T d1l8na2 3 EPCWLRYER 11 (139)
T ss_dssp CCTTCCCCC
T ss_pred cchhcCCCc
Confidence 359999865
No 7
>d1khqa_ d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId: 3649]}
Probab=2.85 E-value=5.2e+02 Score=16.84 Aligned_cols=33 Identities=15% Similarity=0.222 Sum_probs=20.5
Q ss_pred EEEEEEeeccceeEEEeeeeeec--ccCCCCCceeeecCC
Q psy14518 21 KWYYLFGYGFPLVVVGLCSFFFP--GNYGTKEYCWLAPNV 58 (226)
Q Consensus 21 ~~y~~~gwg~P~~~v~i~~~~~~--~~y~~~~~CWl~~~~ 58 (226)
..-.++|||-..- .+.+. .+.|++.+.||+.+.
T Consensus 159 Hav~iVGyg~~yw-----ivrNSWG~~WGd~Gy~~i~~~~ 193 (212)
T d1khqa_ 159 HAVAAVGYGPNYI-----LIKNSWGTGWGENGYIRIKRGT 193 (212)
T ss_dssp EEEEEEEEETTEE-----EEECSBCTTSTBTTEEEEECCS
T ss_pred eEEEecccCCcEE-----EEEcCCCCCcccCCEEEEEcCC
Confidence 3456889998743 22221 245677889998754
No 8
>d1cxya_ d.120.1.1 (A:) Cytochrome b558 {Ectothiorhodospira vacuolata [TaxId: 1054]}
Probab=2.71 E-value=2.3e+02 Score=16.36 Aligned_cols=10 Identities=30% Similarity=0.850 Sum_probs=7.6
Q ss_pred CCceeeecCC
Q psy14518 49 KEYCWLAPNV 58 (226)
Q Consensus 49 ~~~CWl~~~~ 58 (226)
.+.||+..+.
T Consensus 16 ~~d~Wivi~g 25 (81)
T d1cxya_ 16 PDDCWMAIHG 25 (81)
T ss_dssp TTEEEEEETT
T ss_pred CCCEEEEECC
Confidence 4569998875
No 9
>d1mj4a_ d.120.1.1 (A:) Sulfite oxidase, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.50 E-value=3e+02 Score=15.71 Aligned_cols=10 Identities=10% Similarity=0.325 Sum_probs=7.3
Q ss_pred CCceeeecCC
Q psy14518 49 KEYCWLAPNV 58 (226)
Q Consensus 49 ~~~CWl~~~~ 58 (226)
++.||+..+.
T Consensus 17 ~~~~Wiii~g 26 (80)
T d1mj4a_ 17 ETGIWVTLGS 26 (80)
T ss_dssp TTEEEEEETT
T ss_pred CCCeEEEECC
Confidence 3459998875
No 10
>d2daqa1 b.34.9.2 (A:8-104) Histone-lysine N-methyltransferase NSD3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.41 E-value=2.6e+02 Score=16.48 Aligned_cols=13 Identities=23% Similarity=0.953 Sum_probs=9.9
Q ss_pred CCCCCceeeecCC
Q psy14518 46 YGTKEYCWLAPNV 58 (226)
Q Consensus 46 y~~~~~CWl~~~~ 58 (226)
||++++.|++.+.
T Consensus 47 Fg~~~~awv~~~~ 59 (97)
T d2daqa1 47 FGSHDYYWVHQGR 59 (97)
T ss_dssp TTTTEEEEECSSS
T ss_pred ccCCCEEEECHHH
Confidence 6777888987664
Done!