RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14518
(226 letters)
>gnl|CDD|215647 pfam00002, 7tm_2, 7 transmembrane receptor (Secretin family). This
family is known as Family B, the secretin-receptor
family or family 2 of the G-protein-coupled receptors
(GCPRs).They have been described in many animal species,
but not in plants, fungi or prokaryotes. Three distinct
sub-families are recognised. Subfamily B1 contains
classical hormone receptors, such as receptors for
secretin and glucagon, that are all involved in
cAMP-mediated signalling pathways. Subfamily B2 contains
receptors with long extracellular N-termini, such as the
leukocyte cell-surface antigen CD97 ;
calcium-independent receptors for latrotoxin, and
brain-specific angiogenesis inhibitors amongst others.
Subfamily B3 includes Methuselah and other Drosophila
proteins. Other than the typical seven-transmembrane
region, characteristic structural features include an
amino-terminal extracellular domain involved in ligand
binding, and an intracellular loop (IC3) required for
specific G-protein coupling.
Length = 239
Score = 75.3 bits (186), Expect = 2e-16
Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Query: 3 FQLYVMLIEVFEVERSRIKWYYLFGYGFPLVVVGLCSFFFPGNYGTKEYCWLAPNVMVLY 62
LY +L+EVF ER + WY L G+G P VVVG+ + G YG CWL+ N +
Sbjct: 94 LYLYTLLVEVFFSERKYLWWYLLIGWGVPAVVVGIWAIVRKG-YGNPG-CWLSNNGGFWW 151
Query: 63 SFILPIGFVIVINLVFLSMTIVVMCRHANKTLAVKKPRDQSRSA 106
F P+ VI++N +F + ++ + + + + R A
Sbjct: 152 IFKGPVLLVILVNFIFFINILRILVQKLRSPDMGETDQYRKRLA 195
Score = 35.7 bits (83), Expect = 0.010
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 155 LKILTYVGCAMSCICLVVSFLTFHLMKTLKS 185
LK++ VG ++S + L+++ F L + L+
Sbjct: 4 LKVIYTVGYSLSLVALLLAIAIFLLFRKLRC 34
>gnl|CDD|216725 pfam01825, GPS, Latrophilin/CL-1-like GPS domain. Domain present
in latrophilin/CL-1, sea urchin REJ and polycystin.
Length = 44
Score = 57.0 bits (138), Expect = 2e-11
Identities = 19/30 (63%), Positives = 24/30 (80%)
Query: 111 WSTDGCELYSTNKTFTICECTHLTNFALLM 140
WSTDGC + S+N+T T C C HLT+FA+LM
Sbjct: 15 WSTDGCRVVSSNETHTTCSCNHLTSFAVLM 44
>gnl|CDD|197639 smart00303, GPS, G-protein-coupled receptor proteolytic site
domain. Present in latrophilin/CL-1, sea urchin REJ and
polycystin.
Length = 49
Score = 52.0 bits (125), Expect = 1e-09
Identities = 20/34 (58%), Positives = 22/34 (64%)
Query: 111 WSTDGCELYSTNKTFTICECTHLTNFALLMRISE 144
WST GCEL TN T T C C HLT FA+LM +
Sbjct: 15 WSTRGCELLETNGTHTTCSCNHLTTFAVLMDVPP 48
>gnl|CDD|218818 pfam05940, NnrS, NnrS protein. This family consists of several
bacterial NnrS like proteins. NnrS is a putative heme-Cu
protein (NnrS) and a member of the short-chain
dehydrogenase family. Expression of nnrS is dependent on
the transcriptional regulator NnrR, which also regulates
expression of genes required for the reduction of
nitrite to nitrous oxide, including nirK and nor. NnrS
is a haem- and copper-containing membrane protein. Genes
encoding putative orthologues of NnrS are sometimes but
not always found in bacteria encoding nitrite and/or
nitric oxide reductase.
Length = 379
Score = 27.9 bits (63), Expect = 4.4
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 52 CWLAPNVMVLYSFILPIGFVIVINLVFLSMTIVVMCR 88
WLA + L +LP+ +++L FL ++ R
Sbjct: 88 LWLAGRLAFLLGGLLPLWLAALLDLAFLPALAALLAR 124
>gnl|CDD|217636 pfam03606, DcuC, C4-dicarboxylate anaerobic carrier.
Length = 456
Score = 27.3 bits (61), Expect = 6.8
Identities = 9/33 (27%), Positives = 20/33 (60%)
Query: 54 LAPNVMVLYSFILPIGFVIVINLVFLSMTIVVM 86
+ P +++L+ I+ + I ++FL+M I+V
Sbjct: 256 VLPFILMLWGVIVNGWWFPEIAMLFLAMGIIVG 288
>gnl|CDD|203489 pfam06644, ATP11, ATP11 protein. This family consists of several
eukaryotic ATP11 proteins. In Saccharomyces cerevisiae,
expression of functional F1-ATPase requires two proteins
encoded by the ATP11 and ATP12 genes. Atp11p is a
molecular chaperone of the mitochondrial matrix that
participates in the biogenesis pathway to form F1, the
catalytic unit of the ATP synthase.
Length = 250
Score = 26.9 bits (60), Expect = 7.1
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 167 CICLVVSFLTFHLMKTLKSRYPRFV 191
+C V+ T+ LM+ P+FV
Sbjct: 104 SLCAVIPAETYELMEARAKECPQFV 128
>gnl|CDD|215687 pfam00063, Myosin_head, Myosin head (motor domain).
Length = 679
Score = 27.3 bits (61), Expect = 7.7
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 178 HLMKTLKSRYPRFVRDIR 195
+LMKTL+S P FVR I+
Sbjct: 571 NLMKTLRSTNPHFVRCIK 588
>gnl|CDD|188660 cd08705, RGS_R7-like, Regulator of G protein signaling (RGS) domain
found in the R7 subfamily of proteins. The RGS
(Regulator of G-protein Signaling) domain is an
essential part of the R7 (Neuronal RGS) protein
subfamily of the RGS protein family, a diverse group of
multifunctional proteins that regulate cellular
signaling events downstream of G-protein coupled
receptors (GPCRs). As a major G-protein regulator, RGS
domain containing proteins are involved in many crucial
cellular processes such as regulation of intracellular
trafficking, glial differentiation, embryonic axis
formation, skeletal and muscle development, and cell
migration during early embryogenesis. The R7 subfamily
includes RGS6, RGS7, RGS9, and RGS11, all of which, in
humans, are expressed predominantly in the nervous
system, form an obligatory complex with G-beta-5, and
play important roles in the regulation of crucial
neuronal processes. In addition, R7 proteins were found
to bind many other proteins outside of the G protein
signaling pathways including: m-opioid receptor,
beta-arrestin, alpha-actinin-2, NMDAR, polycystin,
spinophilin, guanylyl cyclase, among others.
Length = 121
Score = 26.0 bits (58), Expect = 8.3
Identities = 9/16 (56%), Positives = 11/16 (68%), Gaps = 2/16 (12%)
Query: 177 FHLMKTLKSRYPRFVR 192
+ LMK K YPRF+R
Sbjct: 102 YMLMK--KDSYPRFLR 115
>gnl|CDD|226813 COG4378, COG4378, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 103
Score = 26.0 bits (57), Expect = 8.8
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 161 VGCAMSCICLVVSFLTFHLMKTLKSRYPRFVRDIRGLFAVSVVCSRYSRF 210
+ I ++ FL +LMK +K+ + R I + A Y +
Sbjct: 41 IPSDTDLILVLTDFLNHNLMKKIKNEAKK--RKIPLVCAKRSWSCVYCEY 88
>gnl|CDD|152080 pfam11644, DUF3256, Protein of unknown function (DUF3256). This
family of proteins with unknown function appears to be
restricted to Bacteroidales.
Length = 196
Score = 26.6 bits (59), Expect = 9.2
Identities = 12/66 (18%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
Query: 111 WSTDGCELYSTNKTFTI-------CECTHLTNFALLMRISEESAIDLEGMCLKILTYVGC 163
D + + + E T LT+ + ++++ +S + ++ + L T V C
Sbjct: 28 NREDCIDFLESKMKAQVENRFGGKSEMTELTDDYIRLQMTPQSTVQMKLLPLNDSTKVIC 87
Query: 164 AMSCIC 169
+S +C
Sbjct: 88 VVSTVC 93
>gnl|CDD|179648 PRK03776, PRK03776, phosphoglycerol transferase I; Provisional.
Length = 762
Score = 27.0 bits (60), Expect = 9.8
Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 17/104 (16%)
Query: 1 MRFQLYVMLIEVFEVERSRIKWYYLFGYGFPLVVVGLCSFFFPGNYGTKEYCWLAPNVMV 60
+ F L++ + ++ + R W++ + V L F +Y T + N V
Sbjct: 5 LSFALFLASVLIYAWKAGRNTWWFAATLTVLGLFVVLNITLFASDYFTGD----GINDAV 60
Query: 61 LYS------------FILP-IGFVIVINLVFLSMTIVVMCRHAN 91
LY+ +ILP IG V+ + VF ++ ++ R +
Sbjct: 61 LYTLTNSLTGAGVSKYILPGIGIVLGLVAVFGALGWILRRRRHH 104
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.334 0.144 0.462
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,372,650
Number of extensions: 1039958
Number of successful extensions: 1886
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1879
Number of HSP's successfully gapped: 61
Length of query: 226
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 133
Effective length of database: 6,812,680
Effective search space: 906086440
Effective search space used: 906086440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 57 (25.7 bits)