RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14518
(226 letters)
>4dlo_A Brain-specific angiogenesis inhibitor 3; GAIN domain, includes GPS
motif, autoproteolytic fold, extra signaling protein;
HET: NAG FUL; 2.30A {Homo sapiens}
Length = 382
Score = 67.2 bits (162), Expect = 2e-13
Identities = 22/112 (19%), Positives = 36/112 (32%), Gaps = 4/112 (3%)
Query: 34 VVGLCSFFFPGNYGTKEYCWLAPNVMVLYSFILPIGFVIVINLVFLSMTIVVMCRHANKT 93
V+G + + N ++ I P L + +
Sbjct: 267 VLGAVLYKNLDLILPTLRNYTVINSKIIVVTIRPEPKTTDSFLEIELAHL----ANGTLN 322
Query: 94 LAVKKPRDQSRSAFLSNWSTDGCELYSTNKTFTICECTHLTNFALLMRISEE 145
D + L WST GC+ T+ + T C C L+ FA+L + E
Sbjct: 323 PYCVLWDDSKTNESLGTWSTQGCKTVLTDASHTKCLCDRLSTFAILAQQPRE 374
>4dlq_A Latrophilin-1; GAIN domain, includes the GPS motif, hormone binding
domain, autoproteolysis, A-latrotoxin, extracellular
domain; HET: NAG; 1.85A {Rattus norvegicus}
Length = 381
Score = 45.4 bits (105), Expect = 6e-06
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 101 DQSRSAFLSNWSTDGCELYSTNKTFTICECTHL 133
+ S + L WST GC L +NKT T C C+HL
Sbjct: 349 NYSERSMLGYWSTQGCRLVESNKTHTTCACSHL 381
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.0 bits (98), Expect = 1e-04
Identities = 32/176 (18%), Positives = 54/176 (30%), Gaps = 57/176 (32%)
Query: 3 FQLYVMLIEVF---------EVERSRIKWYYLFGYGFPLVVVGLCSFFFPGNYGTKEYCW 53
+Q Y +L+ E+ R+ + +F G ++ W
Sbjct: 177 YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE------------------W 218
Query: 54 L-----APNVMVLYSFILPIGFVIVINLVFLSMTIVVMCRHANKTLAVKKPRDQSRSAFL 108
L P+ L S +PI + I ++ L+ VV + T P
Sbjct: 219 LENPSNTPDKDYLLS--IPISCPL-IGVIQLA-HYVVTAKLLGFT-----PG-------- 261
Query: 109 SNWSTDGCELYSTNKTFTICECTHLTNFALLMRISEESAIDLEGMCLKILTYVGCA 164
EL S K T +T A+ S ES + +L ++G
Sbjct: 262 --------ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVR 309
Score = 33.1 bits (75), Expect = 0.067
Identities = 37/274 (13%), Positives = 73/274 (26%), Gaps = 126/274 (45%)
Query: 1 MRFQLYVMLIEVFEVERS---RIKWYYLFGYGFPLVVVGLCSFFFPGNYGTKEYCWLAPN 57
M LY + + + R ++ YGF ++ + N P
Sbjct: 1631 MGMDLY----KTSKAAQDVWNRADNHFKDTYGFSILDI------VINN----------PV 1670
Query: 58 VMVLYSFILPIGFVIVINLVFLSMTIVVMCRHANKTLAVKKPRDQSRSAFLSNWSTDGCE 117
+ ++ F G I N + +M + KT + K ++ +++ + ++
Sbjct: 1671 NLTIH-FGGEKGKRIREN--YSAMIFETIVDGKLKTEKIFKEINEHSTSYT--FRSEKGL 1725
Query: 118 LYSTNKTFTICECTHLTNFALLMRISEESAIDLEGMCLKILTYVGCAMSCICLVVSFLTF 177
L +T FT + A+ ++ F
Sbjct: 1726 LSATQ--FT------------------QPAL---------------------TLMEKAAF 1744
Query: 178 HLMKTLKSRYPRFVRDIRGLFA----------------------VSVVCSRYSRFVRGI- 214
+K+ + + FA V VV F RG+
Sbjct: 1745 EDLKS------KGLIPADATFAGHSLGEYAALASLADVMSIESLVEVV------FYRGMT 1792
Query: 215 -----------RGLFAMM-----------CKEAL 226
R + M+ +EAL
Sbjct: 1793 MQVAVPRDELGRSNYGMIAINPGRVAASFSQEAL 1826
Score = 28.5 bits (63), Expect = 2.4
Identities = 22/101 (21%), Positives = 32/101 (31%), Gaps = 42/101 (41%)
Query: 27 GYGFP---LVVVGLCSFFFPGNYGTKEYCWLAPNVMVLYSFI------LPIGFVIVINLV 77
G P L + L T+E + ++ LP G + I+LV
Sbjct: 331 NEGVPSPMLSISNL----------TQE---------QVQDYVNKTNSHLPAGKQVEISLV 371
Query: 78 FLSMTIVV---------MCRHANKTLAVKKPR--DQSRSAF 107
+ +VV + K K P DQSR F
Sbjct: 372 NGAKNLVVSGPPQSLYGLNLTLRK---AKAPSGLDQSRIPF 409
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN
acid, antiepileptic drug target; HET: PLP; 2.3A {Sus
scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Length = 472
Score = 27.2 bits (61), Expect = 4.4
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 181 KTLKSRYPRFVRDIRGL 197
L++RYP+F+ +RG
Sbjct: 392 LDLQARYPQFISRVRGR 408
>3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Length = 220
Score = 26.7 bits (58), Expect = 6.4
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 177 FHLMKTLKSRYPRFVRDIRGLFAVSVVCSRYSRFVRGI 214
FH T P F+ DI + + + + +R +
Sbjct: 40 FHQAPTFDKTIPLFISDINNSPNLYGIYNYIADHLRHV 77
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal
phosphate, PLP, RV3290C, lysine amino transferase; HET:
PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A*
2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Length = 449
Score = 26.8 bits (60), Expect = 7.4
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 181 KTLKSRYPRFVRDIRGL 197
L + +P V D RG
Sbjct: 369 DELAADFPAVVLDPRGR 385
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans
agrobacterium tumefaciens, structural genomics, PSI-2;
HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Length = 259
Score = 26.4 bits (58), Expect = 8.4
Identities = 5/52 (9%), Positives = 16/52 (30%), Gaps = 2/52 (3%)
Query: 170 LVVSFLTFHLMKTLKSRYPRFVRDIR--GLFAVSVVCSRYSRFVRGIRGLFA 219
L+ + F + + + + + G+ AV + + +
Sbjct: 98 LLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETAD 149
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.334 0.144 0.462
Gapped
Lambda K H
0.267 0.0332 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,444,052
Number of extensions: 190841
Number of successful extensions: 609
Number of sequences better than 10.0: 1
Number of HSP's gapped: 606
Number of HSP's successfully gapped: 13
Length of query: 226
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 136
Effective length of database: 4,188,903
Effective search space: 569690808
Effective search space used: 569690808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 55 (26.1 bits)