RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14518
         (226 letters)



>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
           discoideum, class-I myosin MyoE [TaxId: 44689]}
          Length = 684

 Score = 27.0 bits (59), Expect = 2.2
 Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 9/46 (19%)

Query: 179 LMKTLKSRYPRFVRDIR-------GLFAVSVVCS--RYSRFVRGIR 215
           L+ TL +  P +VR I+       G+     V    RY   +  +R
Sbjct: 565 LITTLLACSPHYVRCIKSNDNKQAGVIDEDRVRHQVRYLGLLENVR 610


>d2b3ja1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA
           {Staphylococcus aureus [TaxId: 1280]}
          Length = 151

 Score = 26.1 bits (56), Expect = 2.3
 Identities = 14/66 (21%), Positives = 26/66 (39%)

Query: 67  PIGFVIVINLVFLSMTIVVMCRHANKTLAVKKPRDQSRSAFLSNWSTDGCELYSTNKTFT 126
           PIG +I  +   ++    +       T   +    +  +  L +W  +GC LY T +   
Sbjct: 25  PIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGSWRLEGCTLYVTLEPCV 84

Query: 127 ICECTH 132
           +C  T 
Sbjct: 85  MCAGTI 90


>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
           {Dictyostelium discoideum [TaxId: 44689]}
          Length = 712

 Score = 26.6 bits (58), Expect = 3.4
 Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 9/46 (19%)

Query: 179 LMKTLKSRYPRFVRDIR-------GLFAVSVVCS--RYSRFVRGIR 215
           LM TL++  P FVR I              VV    R +  + GIR
Sbjct: 594 LMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIR 639


>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
           (Gallus gallus), Va isoform [TaxId: 9031]}
          Length = 730

 Score = 25.9 bits (56), Expect = 4.7
 Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 9/46 (19%)

Query: 179 LMKTLKSRYPRFVRDIR-------GLFAVSVVCS--RYSRFVRGIR 215
           LM+TL +  P +VR I+         F         R    +  IR
Sbjct: 585 LMETLNATTPHYVRCIKPNDFKFPFTFDEKRAVQQLRACGVLETIR 630


>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
           (Gallus gallus), pectoral muscle [TaxId: 9031]}
          Length = 710

 Score = 25.9 bits (56), Expect = 5.8
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 9/46 (19%)

Query: 179 LMKTLKSRYPRFVRDIR-------GLFAVSVVCS--RYSRFVRGIR 215
           LM TL++  P FVR I        G     +V    R +  + GIR
Sbjct: 591 LMTTLRNTNPNFVRCIIPNHEKRAGKLDAHLVLEQLRCNGVLEGIR 636


>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
           GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}
          Length = 461

 Score = 25.0 bits (53), Expect = 9.3
 Identities = 7/18 (38%), Positives = 13/18 (72%)

Query: 180 MKTLKSRYPRFVRDIRGL 197
           +  L++RYP+F+  +RG 
Sbjct: 381 LLDLQARYPQFISRVRGR 398


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.334    0.144    0.462 

Gapped
Lambda     K      H
   0.267   0.0441    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 858,523
Number of extensions: 37502
Number of successful extensions: 146
Number of sequences better than 10.0: 1
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 7
Length of query: 226
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 144
Effective length of database: 1,281,736
Effective search space: 184569984
Effective search space used: 184569984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 51 (24.1 bits)