BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1452
(268 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MA3|A Chain A, Structure Of A Sir2 Enzyme Bound To An Acetylated P53
Peptide
pdb|1S7G|A Chain A, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|B Chain B, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|C Chain C, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|D Chain D, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|E Chain E, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1YC2|A Chain A, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|B Chain B, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|C Chain C, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|D Chain D, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|E Chain E, Sir2af2-Nad-Adpribose-Nicotinamide
Length = 253
Score = 107 bits (268), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 112/226 (49%), Gaps = 32/226 (14%)
Query: 36 ESDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRR 95
E +I K + + K +V TGAGIS ESGIP +R E GL+ + D P + +R
Sbjct: 2 EDEIRKAAEILAKSKHAVVFTGAGISAESGIPTFRGED-GLWRKYD--PEEVASISGFKR 58
Query: 96 VRIRYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEM 155
+W + + + +PN HYA+ ++E + +ITQN+D LH +AG+++V+E+
Sbjct: 59 NPRAFWEFSMEMKDKLFA-EPNPAHYAIAELERMGIVKAVITQNIDMLHQRAGSRRVLEL 117
Query: 156 HGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQC 215
HG+ ++ CL C D +F +ED N K +P+C
Sbjct: 118 HGSMDKLDCLDCHETYDWSEF---VEDFN------------------------KGEIPRC 150
Query: 216 PHCHG-DLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTV 260
C +KP +V FG+ +P+ + + + CD +V+GSSL V
Sbjct: 151 RKCGSYYVKPRVVLFGEPLPQRTLFEAIEEAKHCDAFMVVGSSLVV 196
>pdb|1YC5|A Chain A, Sir2-P53 Peptide-Nicotinamide
pdb|2H4F|A Chain A, Sir2-P53 Peptide-Nad+
pdb|2H4J|A Chain A, Sir2-Deacetylated Peptide (From Enzymatic Turnover In
Crystal)
pdb|2H2D|A Chain A, The Structural Basis For Sirtuin Substrate Affinity
pdb|2H2F|A Chain A, The Structural Basis For Sirtuin Substrate Affinity
pdb|2H2G|A Chain A, The Structural Basis Of Sirtuin Substrate Affinity
pdb|2H2H|A Chain A, The Structural Basis Of Sirtuin Substrate Specificity
pdb|2H2I|A Chain A, The Structural Basis Of Sirtuin Substrate Affinity
pdb|3D4B|A Chain A, Crystal Structure Of Sir2tm In Complex With Acetyl P53
Peptide And Dadme-Nad+
pdb|3D81|A Chain A, Sir2-S-Alkylamidate Complex Crystal Structure
pdb|3PDH|A Chain A, Structure Of Sir2tm Bound To A Propionylated Peptide
Length = 246
Score = 107 bits (267), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 116/223 (52%), Gaps = 34/223 (15%)
Query: 41 KLKQFIEKYNK---ILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRVR 97
K+K+F++ N+ + +TGAGIST SGIPD+R G+Y + + DF S
Sbjct: 2 KMKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPN-GIYKKYSQNVFDI-DFFYSHPEE 59
Query: 98 IRYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHG 157
+A+ + +P + +PN H L ++E+ + +ITQN+D LH +AG+KKVIE+HG
Sbjct: 60 FYRFAKEGI-FPMLQA-KPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELHG 117
Query: 158 TAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPH 217
C+ C+ ++ + +++ L ES + VP C
Sbjct: 118 NVEEYYCVRCE---KKYTVEDVIKKL------ESSD------------------VPLCDD 150
Query: 218 CHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTV 260
C+ ++P+IVFFG+N+P+ + + L ++VLGSSL V
Sbjct: 151 CNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVV 193
>pdb|2NYR|A Chain A, Crystal Structure Of Human Sirtuin Homolog 5 In Complex
With Suramin
pdb|2NYR|B Chain B, Crystal Structure Of Human Sirtuin Homolog 5 In Complex
With Suramin
Length = 271
Score = 107 bits (267), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 122/246 (49%), Gaps = 36/246 (14%)
Query: 37 SDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLK---- 92
S + ++F K I++++GAG+S ESG+P +R G G Y R Q QD
Sbjct: 7 SSMADFRKFFAKAKHIVIISGAGVSAESGVPTFR--GAGGYWRK----WQAQDLATPLAF 60
Query: 93 ----SRRVRIRYWARNFVGWPRFSSFQPNANHYALKQMED----NEKLSYIITQNVDGLH 144
SR ++ R +G S +PNA H A+ + E + +ITQN+D LH
Sbjct: 61 AHNPSRVWEFYHYRREVMG-----SKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELH 115
Query: 145 YKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSE 204
KAG K ++E+HG+ F+ C C + +K +P S + P+ + +
Sbjct: 116 RKAGTKNLLEIHGSLFKTRCTSCGVVAENYK--------SPICPALSGKGAPEPGTQDAS 167
Query: 205 ETISKFHVPQCPH--CHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVSF 262
+ K +P+C C G L+P +V+FG+N+ +E++D + CD LV+G+S +V +
Sbjct: 168 IPVEK--LPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTS-SVVY 224
Query: 263 SKSMLS 268
+M +
Sbjct: 225 PAAMFA 230
>pdb|4HDA|A Chain A, Crystal Structure Of Human Sirt5 In Complex With
Fluor-de-lys Peptide And Resveratrol
pdb|4HDA|B Chain B, Crystal Structure Of Human Sirt5 In Complex With
Fluor-de-lys Peptide And Resveratrol
Length = 275
Score = 107 bits (267), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 122/246 (49%), Gaps = 36/246 (14%)
Query: 37 SDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLK---- 92
S + ++F K I++++GAG+S ESG+P +R G G Y R Q QD
Sbjct: 11 SSMADFRKFFAKAKHIVIISGAGVSAESGVPTFR--GAGGYWRK----WQAQDLATPLAF 64
Query: 93 ----SRRVRIRYWARNFVGWPRFSSFQPNANHYALKQMED----NEKLSYIITQNVDGLH 144
SR ++ R +G S +PNA H A+ + E + +ITQN+D LH
Sbjct: 65 AHNPSRVWEFYHYRREVMG-----SKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELH 119
Query: 145 YKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSE 204
KAG K ++E+HG+ F+ C C + +K +P S + P+ + +
Sbjct: 120 RKAGTKNLLEIHGSLFKTRCTSCGVVAENYK--------SPICPALSGKGAPEPGTQDAS 171
Query: 205 ETISKFHVPQCPH--CHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVSF 262
+ K +P+C C G L+P +V+FG+N+ +E++D + CD LV+G+S +V +
Sbjct: 172 IPVEK--LPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTS-SVVY 228
Query: 263 SKSMLS 268
+M +
Sbjct: 229 PAAMFA 234
>pdb|4G1C|A Chain A, Human Sirt5 Bound To Succ-Idh2 And Carba-Nad
pdb|4G1C|B Chain B, Human Sirt5 Bound To Succ-Idh2 And Carba-Nad
Length = 267
Score = 107 bits (267), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 122/246 (49%), Gaps = 36/246 (14%)
Query: 37 SDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLK---- 92
S + ++F K I++++GAG+S ESG+P +R G G Y R Q QD
Sbjct: 3 SSMADFRKFFAKAKHIVIISGAGVSAESGVPTFR--GAGGYWRK----WQAQDLATPLAF 56
Query: 93 ----SRRVRIRYWARNFVGWPRFSSFQPNANHYALKQMED----NEKLSYIITQNVDGLH 144
SR ++ R +G S +PNA H A+ + E + +ITQN+D LH
Sbjct: 57 AHNPSRVWEFYHYRREVMG-----SKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELH 111
Query: 145 YKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSE 204
KAG K ++E+HG+ F+ C C + +K +P S + P+ + +
Sbjct: 112 RKAGTKNLLEIHGSLFKTRCTSCGVVAENYK--------SPICPALSGKGAPEPGTQDAS 163
Query: 205 ETISKFHVPQCPH--CHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVSF 262
+ K +P+C C G L+P +V+FG+N+ +E++D + CD LV+G+S +V +
Sbjct: 164 IPVEK--LPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTS-SVVY 220
Query: 263 SKSMLS 268
+M +
Sbjct: 221 PAAMFA 226
>pdb|3RIG|A Chain A, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|3RIG|B Chain B, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|3RIY|A Chain A, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|3RIY|B Chain B, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|4F4U|A Chain A, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
pdb|4F4U|B Chain B, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
pdb|4F56|A Chain A, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
pdb|4F56|B Chain B, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
Length = 273
Score = 107 bits (267), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 122/246 (49%), Gaps = 36/246 (14%)
Query: 37 SDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLK---- 92
S + ++F K I++++GAG+S ESG+P +R G G Y R Q QD
Sbjct: 9 SSMADFRKFFAKAKHIVIISGAGVSAESGVPTFR--GAGGYWRK----WQAQDLATPLAF 62
Query: 93 ----SRRVRIRYWARNFVGWPRFSSFQPNANHYALKQMED----NEKLSYIITQNVDGLH 144
SR ++ R +G S +PNA H A+ + E + +ITQN+D LH
Sbjct: 63 AHNPSRVWEFYHYRREVMG-----SKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELH 117
Query: 145 YKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSE 204
KAG K ++E+HG+ F+ C C + +K +P S + P+ + +
Sbjct: 118 RKAGTKNLLEIHGSLFKTRCTSCGVVAENYK--------SPICPALSGKGAPEPGTQDAS 169
Query: 205 ETISKFHVPQCPH--CHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVSF 262
+ K +P+C C G L+P +V+FG+N+ +E++D + CD LV+G+S +V +
Sbjct: 170 IPVEK--LPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTS-SVVY 226
Query: 263 SKSMLS 268
+M +
Sbjct: 227 PAAMFA 232
>pdb|2H4H|A Chain A, Sir2 H116y Mutant-P53 Peptide-Nad
Length = 246
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 116/223 (52%), Gaps = 34/223 (15%)
Query: 41 KLKQFIEKYNK---ILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRVR 97
K+K+F++ N+ + +TGAGIST SGIPD+R G+Y + + DF S
Sbjct: 2 KMKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPN-GIYKKYSQNVFDI-DFFYSHPEE 59
Query: 98 IRYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHG 157
+A+ + +P + +PN H L ++E+ + +ITQN+D LH +AG+KKVIE++G
Sbjct: 60 FYRFAKEGI-FPMLQA-KPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELYG 117
Query: 158 TAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPH 217
C+ C+ ++ + +++ L ES + VP C
Sbjct: 118 NVEEYYCVRCE---KKYTVEDVIKKL------ESSD------------------VPLCDD 150
Query: 218 CHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTV 260
C+ ++P+IVFFG+N+P+ + + L ++VLGSSL V
Sbjct: 151 CNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVV 193
>pdb|2B4Y|A Chain A, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|B Chain B, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|C Chain C, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|D Chain D, Crystal Structure Of Human Sirtuin Homolog 5
Length = 271
Score = 105 bits (261), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 115/238 (48%), Gaps = 35/238 (14%)
Query: 37 SDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLK---- 92
S ++F K I++++GAG+S ESG+P +R G G Y R Q QD
Sbjct: 7 SSXADFRKFFAKAKHIVIISGAGVSAESGVPTFR--GAGGYWRK----WQAQDLATPLAF 60
Query: 93 ----SRRVRIRYWARNFVGWPRFSSFQPNANHYALKQMED----NEKLSYIITQNVDGLH 144
SR ++ R G S +PNA H A+ + E + +ITQN+D LH
Sbjct: 61 AHNPSRVWEFYHYRREVXG-----SKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELH 115
Query: 145 YKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSE 204
KAG K ++E+HG+ F+ C C + +K +P S + P+ + +
Sbjct: 116 RKAGTKNLLEIHGSLFKTRCTSCGVVAENYK--------SPICPALSGKGAPEPGTQDAS 167
Query: 205 ETISKFHVPQCPH--CHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTV 260
+ K +P+C C G L+P +V+FG+N+ +E++D + CD LV+G+S V
Sbjct: 168 IPVEK--LPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVV 223
>pdb|2H59|A Chain A, Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp Ribose
pdb|2H59|B Chain B, Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp Ribose
pdb|3JR3|A Chain A, Sir2 Bound To Acetylated Peptide
Length = 246
Score = 104 bits (259), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 115/223 (51%), Gaps = 34/223 (15%)
Query: 41 KLKQFIEKYNK---ILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRVR 97
K+K+F++ N+ + +TGAGIST SGIPD+R G+Y + + DF S
Sbjct: 2 KMKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPN-GIYKKYSQNVFDI-DFFYSHPEE 59
Query: 98 IRYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHG 157
+A+ + +P + +PN H L ++E+ + +ITQN+D LH +AG+KKVIE+ G
Sbjct: 60 FYRFAKEGI-FPMLQA-KPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELAG 117
Query: 158 TAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPH 217
C+ C+ ++ + +++ L ES + VP C
Sbjct: 118 NVEEYYCVRCE---KKYTVEDVIKKL------ESSD------------------VPLCDD 150
Query: 218 CHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTV 260
C+ ++P+IVFFG+N+P+ + + L ++VLGSSL V
Sbjct: 151 CNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVV 193
>pdb|3U31|A Chain A, Plasmodium Falciparum Sir2a Preferentially Hydrolyzes
Medium And Long Chain Fatty Acyl Lysine
pdb|3U3D|A Chain A, Plasmodium Falciparum Sir2a Preferentially Hydrolyzes
Medium And Long Chain Fatty Acyl Lysine
Length = 290
Score = 101 bits (252), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 115/246 (46%), Gaps = 37/246 (15%)
Query: 25 ISFIPKHKPVEESDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRP 84
ISF+ K + + +L + I+K ++ +TG+G S ES IP +R ++++ D R
Sbjct: 23 ISFLKK--DTQSITLEELAKIIKKCKHVVALTGSGTSAESNIPSFRGSSNSIWSKYDPRI 80
Query: 85 VQ----FQDFLKSRRVRIRYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNV 140
F + + IR + ++ + N H AL +E L ++TQNV
Sbjct: 81 YGTIWGFWKYPEKIWEVIRDISSDY-------EIEINNGHVALSTLESLGYLKSVVTQNV 133
Query: 141 DGLHYKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDV 200
DGLH +GN KVI +HG F +C C+ + K KI+ M P
Sbjct: 134 DGLHEASGNTKVISLHGNVFEAVCCTCNKIV---KLNKIMLQKTSHFM----HQLP---- 182
Query: 201 EMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTV 260
P+CP C G KP+I+ FG+ + +++ + + CD +LV+G+S TV
Sbjct: 183 ------------PECP-CGGIFKPNIILFGEVVSSDLLKEAEEEIAKCDLLLVIGTSSTV 229
Query: 261 SFSKSM 266
S + ++
Sbjct: 230 STATNL 235
>pdb|4FVT|A Chain A, Human Sirt3 Bound To Ac-Acs Peptide And Carba-Nad
Length = 274
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 109/227 (48%), Gaps = 44/227 (19%)
Query: 50 NKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQD-------FLKSRRVRIRYWA 102
+++V+ GAGIST SGIPD+RS G GLY+ + + + + F + +
Sbjct: 17 QRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFELPFFFHNPKPFFTLAK 76
Query: 103 RNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAG--NKKVIEMHGTAF 160
+ G +++PN HY L+ + D L + TQN+DGL +G K++E HGT
Sbjct: 77 ELYPG-----NYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFA 131
Query: 161 RVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHG 220
C C + F ED+ D+M + VP+CP C G
Sbjct: 132 SATCTVC-----QRPFPG--EDIRADVMAD--------------------RVPRCPVCTG 164
Query: 221 DLKPDIVFFGDNIP-RHRMEKIDHLVRSCDGVLVLGSSLTVSFSKSM 266
+KPDIVFFG+ +P R + +D + D +L+LG+SL V S+
Sbjct: 165 VVKPDIVFFGEPLPQRFLLHVVDFPM--ADLLLILGTSLEVEPFASL 209
>pdb|3GLR|A Chain A, Crystal Structure Of Human Sirt3 With Acetyl-Lysine Acecs2
Peptide
pdb|3GLS|A Chain A, Crystal Structure Of Human Sirt3
pdb|3GLS|B Chain B, Crystal Structure Of Human Sirt3
pdb|3GLS|C Chain C, Crystal Structure Of Human Sirt3
pdb|3GLS|D Chain D, Crystal Structure Of Human Sirt3
pdb|3GLS|E Chain E, Crystal Structure Of Human Sirt3
pdb|3GLS|F Chain F, Crystal Structure Of Human Sirt3
pdb|3GLT|A Chain A, Crystal Structure Of Human Sirt3 With Adpr Bound To The
Acecs2 Peptide Containing A Thioacetyl Lysine
pdb|3GLU|A Chain A, Crystal Structure Of Human Sirt3 With Acecs2 Peptide
Length = 285
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 109/227 (48%), Gaps = 44/227 (19%)
Query: 50 NKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQD-------FLKSRRVRIRYWA 102
+++V+ GAGIST SGIPD+RS G GLY+ + + + + F + +
Sbjct: 24 QRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFELPFFFHNPKPFFTLAK 83
Query: 103 RNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAG--NKKVIEMHGTAF 160
+ G +++PN HY L+ + D L + TQN+DGL +G K++E HGT
Sbjct: 84 ELYPG-----NYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFA 138
Query: 161 RVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHG 220
C C + F ED+ D+M + VP+CP C G
Sbjct: 139 SATCTVC-----QRPFPG--EDIRADVMAD--------------------RVPRCPVCTG 171
Query: 221 DLKPDIVFFGDNIP-RHRMEKIDHLVRSCDGVLVLGSSLTVSFSKSM 266
+KPDIVFFG+ +P R + +D + D +L+LG+SL V S+
Sbjct: 172 VVKPDIVFFGEPLPQRFLLHVVDFPM--ADLLLILGTSLEVEPFASL 216
>pdb|4HD8|A Chain A, Crystal Structure Of Human Sirt3 In Complex With
Fluor-de-lys Peptide And Piceatannol
Length = 284
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 109/227 (48%), Gaps = 44/227 (19%)
Query: 50 NKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQD-------FLKSRRVRIRYWA 102
+++V+ GAGIST SGIPD+RS G GLY+ + + + + F + +
Sbjct: 23 QRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFELPFFFHNPKPFFTLAK 82
Query: 103 RNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAG--NKKVIEMHGTAF 160
+ G +++PN HY L+ + D L + TQN+DGL +G K++E HGT
Sbjct: 83 ELYPG-----NYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFA 137
Query: 161 RVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHG 220
C C + F ED+ D+M + VP+CP C G
Sbjct: 138 SATCTVC-----QRPFPG--EDIRADVMAD--------------------RVPRCPVCTG 170
Query: 221 DLKPDIVFFGDNIP-RHRMEKIDHLVRSCDGVLVLGSSLTVSFSKSM 266
+KPDIVFFG+ +P R + +D + D +L+LG+SL V S+
Sbjct: 171 VVKPDIVFFGEPLPQRFLLHVVDFPM--ADLLLILGTSLEVEPFASL 215
>pdb|3JWP|A Chain A, Crystal Structure Of Plasmodium Falciparum Sir2a
(Pf13_0152) In Complex With Amp
Length = 265
Score = 97.1 bits (240), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 109/239 (45%), Gaps = 35/239 (14%)
Query: 32 KPVEESDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQ----F 87
K + + +L + I+K ++ +TG+G S ES IP +R ++++ D R F
Sbjct: 3 KDTQSITLEELAKIIKKCKHVVALTGSGTSAESNIPSFRGSSNSIWSKYDPRIYGTIWGF 62
Query: 88 QDFLKSRRVRIRYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKA 147
+ + IR + ++ + N H AL +E L ++TQNVDGLH +
Sbjct: 63 WKYPEKIWEVIRDISSDY-------EIEINNGHVALSTLESLGYLKSVVTQNVDGLHEAS 115
Query: 148 GNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETI 207
GN KVI +HG F +C C+ + K KI P
Sbjct: 116 GNTKVISLHGNVFEAVCCTCNKIV---KLNKIXLQKTSHFX----HQLP----------- 157
Query: 208 SKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVSFSKSM 266
P+CP C G KP+I+ FG+ + +++ + + CD +LV+G+S TVS + ++
Sbjct: 158 -----PECP-CGGIFKPNIILFGEVVSSDLLKEAEEEIAKCDLLLVIGTSSTVSTATNL 210
>pdb|4I5I|A Chain A, Crystal Structure Of The Sirt1 Catalytic Domain Bound To
Nad And An Ex527 Analog
pdb|4I5I|B Chain B, Crystal Structure Of The Sirt1 Catalytic Domain Bound To
Nad And An Ex527 Analog
Length = 287
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 112/231 (48%), Gaps = 47/231 (20%)
Query: 44 QFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRV-RIRYWA 102
+ +++ KI+V+TGAG+S GIPD+RS G+YAR V F D + + I Y+
Sbjct: 11 KLLQECKKIIVLTGAGVSVSCGIPDFRSRD-GIYAR---LAVDFPDLPDPQAMFDIEYFR 66
Query: 103 RNFVGWPRFS------SFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMH 156
++ + +F+ FQP+ H + + KL TQN+D L AG +++I+ H
Sbjct: 67 KDPRPFFKFAKEIYPGQFQPSLCHKFIALSDKEGKLLRNYTQNIDTLEQVAGIQRIIQCH 126
Query: 157 GTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCP 216
G+ CL C Y++D + +R D I VP+CP
Sbjct: 127 GSFATASCLICKYKVD------------------CEAVRGD---------IFNQVVPRCP 159
Query: 217 HCHGD-----LKPDIVFFGDNIPR--HRMEKIDHLVRSCDGVLVLGSSLTV 260
C D +KP+IVFFG+N+P HR K D D ++V+GSSL V
Sbjct: 160 RCPADEPLAIMKPEIVFFGENLPEQFHRAMKYDK--DEVDLLIVIGSSLKV 208
>pdb|1ICI|A Chain A, Crystal Structure Of A Sir2 Homolog-Nad Complex
pdb|1ICI|B Chain B, Crystal Structure Of A Sir2 Homolog-Nad Complex
Length = 256
Score = 94.0 bits (232), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 106/229 (46%), Gaps = 39/229 (17%)
Query: 41 KLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQF---QDFLKSRRVR 97
KL + I + ++ +TGAG+S ESGIP +R + GL+ R RP + Q F K
Sbjct: 15 KLLKTIAESKYLVALTGAGVSAESGIPTFRGKD-GLWNRY--RPEELANPQAFAKDPEKV 71
Query: 98 IRYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHG 157
+++A + + QPN H A ++E L +ITQNVD LH +AG++ VI +HG
Sbjct: 72 WKWYAWRM---EKVFNAQPNKAHQAFAELERLGVLKCLITQNVDDLHERAGSRNVIHLHG 128
Query: 158 TAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPH 217
+ V C C+ + KI P L P+C
Sbjct: 129 SLRVVRCTSCNNSFEVESAPKI-----PPL-------------------------PKCDK 158
Query: 218 CHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVSFSKSM 266
C L+P +V+FG+ +P +++ V D ++V G+S V + S+
Sbjct: 159 CGSLLRPGVVWFGEMLPPDVLDRAMREVERADVIIVAGTSAVVQPAASL 207
>pdb|1M2G|A Chain A, Sir2 Homologue-Adp Ribose Complex
Length = 249
Score = 94.0 bits (232), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 106/229 (46%), Gaps = 39/229 (17%)
Query: 41 KLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQF---QDFLKSRRVR 97
KL + I + ++ +TGAG+S ESGIP +R + GL+ R RP + Q F K
Sbjct: 4 KLLKTIAESKYLVALTGAGVSAESGIPTFRGKD-GLWNRY--RPEELANPQAFAKDPEKV 60
Query: 98 IRYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHG 157
+++A + + QPN H A ++E L +ITQNVD LH +AG++ VI +HG
Sbjct: 61 WKWYAWRM---EKVFNAQPNKAHQAFAELERLGVLKCLITQNVDDLHERAGSRNVIHLHG 117
Query: 158 TAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPH 217
+ V C C+ + KI P L P+C
Sbjct: 118 SLRVVRCTSCNNSFEVESAPKI-----PPL-------------------------PKCDK 147
Query: 218 CHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVSFSKSM 266
C L+P +V+FG+ +P +++ V D ++V G+S V + S+
Sbjct: 148 CGSLLRPGVVWFGEMLPPDVLDRAMREVERADVIIVAGTSAVVQPAASL 196
>pdb|1M2N|A Chain A, Sir2 Homologues (D102gF159AR170A) MUTANT-2'-O-Acetyl Adp
Ribose Complex
pdb|1M2N|B Chain B, Sir2 Homologues (D102gF159AR170A) MUTANT-2'-O-Acetyl Adp
Ribose Complex
Length = 249
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 105/229 (45%), Gaps = 39/229 (17%)
Query: 41 KLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQF---QDFLKSRRVR 97
KL + I + ++ +TGAG+S ESGIP +R + GL+ R RP + Q F K
Sbjct: 4 KLLKTIAESKYLVALTGAGVSAESGIPTFRGKD-GLWNRY--RPEELANPQAFAKDPEKV 60
Query: 98 IRYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHG 157
+++A + + QPN H A ++E L +ITQNVDGLH +AG++ VI +HG
Sbjct: 61 WKWYAWRM---EKVFNAQPNKAHQAFAELERLGVLKCLITQNVDGLHERAGSRNVIHLHG 117
Query: 158 TAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPH 217
+ V C C+ + KI P L P+C
Sbjct: 118 SLRVVRCTSCNNSFEVESAPKI-----PPL-------------------------PKCDK 147
Query: 218 CHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVSFSKSM 266
C L+P +V+ G+ +P ++ V D ++V G+S V + S+
Sbjct: 148 CGSLLRPGVVWAGEMLPPDVLDAAMREVERADVIIVAGTSAVVQPAASL 196
>pdb|1M2H|A Chain A, Sir2 Homologue S24a Mutant-adp Ribose Complex
Length = 249
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 106/229 (46%), Gaps = 39/229 (17%)
Query: 41 KLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQF---QDFLKSRRVR 97
KL + I + ++ +TGAG++ ESGIP +R + GL+ R RP + Q F K
Sbjct: 4 KLLKTIAESKYLVALTGAGVAAESGIPTFRGKD-GLWNRY--RPEELANPQAFAKDPEKV 60
Query: 98 IRYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHG 157
+++A + + QPN H A ++E L +ITQNVD LH +AG++ VI +HG
Sbjct: 61 WKWYAWRM---EKVFNAQPNKAHQAFAELERLGVLKCLITQNVDDLHERAGSRNVIHLHG 117
Query: 158 TAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPH 217
+ V C C+ + KI P L P+C
Sbjct: 118 SLRVVRCTSCNNSFEVESAPKI-----PPL-------------------------PKCDK 147
Query: 218 CHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVSFSKSM 266
C L+P +V+FG+ +P +++ V D ++V G+S V + S+
Sbjct: 148 CGSLLRPGVVWFGEMLPPDVLDRAMREVERADVIIVAGTSAVVQPAASL 196
>pdb|1M2J|A Chain A, Sir2 Homologue H80n Mutant-Adp Ribose Complex
Length = 249
Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 106/229 (46%), Gaps = 39/229 (17%)
Query: 41 KLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQF---QDFLKSRRVR 97
KL + I + ++ +TGAG+S ESGIP +R + GL+ R RP + Q F K
Sbjct: 4 KLLKTIAESKYLVALTGAGVSAESGIPTFRGKD-GLWNRY--RPEELANPQAFAKDPEKV 60
Query: 98 IRYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHG 157
+++A + + QPN + A ++E L +ITQNVD LH +AG++ VI +HG
Sbjct: 61 WKWYAWRM---EKVFNAQPNKANQAFAELERLGVLKCLITQNVDDLHERAGSRNVIHLHG 117
Query: 158 TAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPH 217
+ V C C+ + KI P L P+C
Sbjct: 118 SLRVVRCTSCNNSFEVESAPKI-----PPL-------------------------PKCDK 147
Query: 218 CHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVSFSKSM 266
C L+P +V+FG+ +P +++ V D ++V G+S V + S+
Sbjct: 148 CGSLLRPGVVWFGEMLPPDVLDRAMREVERADVIIVAGTSAVVQPAASL 196
>pdb|1M2K|A Chain A, Sir2 Homologue F159a Mutant-Adp Ribose Complex
Length = 249
Score = 90.9 bits (224), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 105/229 (45%), Gaps = 39/229 (17%)
Query: 41 KLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQF---QDFLKSRRVR 97
KL + I + ++ +TGAG+S ESGIP +R + GL+ R RP + Q F K
Sbjct: 4 KLLKTIAESKYLVALTGAGVSAESGIPTFRGKD-GLWNRY--RPEELANPQAFAKDPEKV 60
Query: 98 IRYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHG 157
+++A + + QPN H A ++E L +ITQNVD LH +AG++ VI +HG
Sbjct: 61 WKWYAWRM---EKVFNAQPNKAHQAFAELERLGVLKCLITQNVDDLHERAGSRNVIHLHG 117
Query: 158 TAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPH 217
+ V C C+ + KI P L P+C
Sbjct: 118 SLRVVRCTSCNNSFEVESAPKI-----PPL-------------------------PKCDK 147
Query: 218 CHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVSFSKSM 266
C L+P +V+ G+ +P +++ V D ++V G+S V + S+
Sbjct: 148 CGSLLRPGVVWAGEMLPPDVLDRAMREVERADVIIVAGTSAVVQPAASL 196
>pdb|1J8F|A Chain A, Human Sirt2 Histone Deacetylase
Length = 323
Score = 88.2 bits (217), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 115/251 (45%), Gaps = 43/251 (17%)
Query: 30 KHKPVEESDINKLKQFI--EKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQF 87
K + ++E + + +++ E+ +++ + GAGIST +GIPD+RS GLY +K + +
Sbjct: 22 KERLLDELTLEGVARYMQSERCRRVICLVGAGISTSAGIPDFRSPSTGLYDNLEKYHLPY 81
Query: 88 QDFLKSRRVRIRYWARNFVGWPRFS--------SFQPNANHYALKQMEDNEKLSYIITQN 139
+ + I Y+ ++ P F+ F+P HY ++ ++D L TQN
Sbjct: 82 PEAI----FEISYFKKH--PEPFFALAKELYPGQFKPTICHYFMRLLKDKGLLLRCYTQN 135
Query: 140 VDGLHYKAG--NKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPD 197
+D L AG + ++E HGT + C+ S R +
Sbjct: 136 IDTLERIAGLEQEDLVEAHGTFYTSHCV-------------------------SASCRHE 170
Query: 198 GDVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSS 257
+ +E I P+C C +KPDIVFFG+++P + D +LV+G+S
Sbjct: 171 YPLSWMKEKIFSEVTPKCEDCQSLVKPDIVFFGESLPARFFSCMQSDFLKVDLLLVMGTS 230
Query: 258 LTVSFSKSMLS 268
L V S++S
Sbjct: 231 LQVQPFASLIS 241
>pdb|1J8F|C Chain C, Human Sirt2 Histone Deacetylase
pdb|1J8F|B Chain B, Human Sirt2 Histone Deacetylase
Length = 323
Score = 87.8 bits (216), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 115/251 (45%), Gaps = 43/251 (17%)
Query: 30 KHKPVEESDINKLKQFI--EKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQF 87
K + ++E + + +++ E+ +++ + GAGIST +GIPD+RS GLY +K + +
Sbjct: 22 KERLLDELTLEGVARYMQSERCRRVICLVGAGISTSAGIPDFRSPSTGLYDNLEKYHLPY 81
Query: 88 QDFLKSRRVRIRYWARNFVGWPRFS--------SFQPNANHYALKQMEDNEKLSYIITQN 139
+ + I Y+ ++ P F+ F+P HY ++ ++D L TQN
Sbjct: 82 PEAI----FEISYFKKH--PEPFFALAKELYPGQFKPTICHYFMRLLKDKGLLLRCYTQN 135
Query: 140 VDGLHYKAG--NKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPD 197
+D L AG + ++E HGT + C+ S R +
Sbjct: 136 IDTLERIAGLEQEDLVEAHGTFYTSHCV-------------------------SASCRHE 170
Query: 198 GDVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSS 257
+ +E I P+C C +KPDIVFFG+++P + D +LV+G+S
Sbjct: 171 YPLSWMKEKIFSEVTPKCEDCQSLVKPDIVFFGESLPARFFSCMQSDFLKVDLLLVMGTS 230
Query: 258 LTVSFSKSMLS 268
L V S++S
Sbjct: 231 LQVQPFASLIS 241
>pdb|1SZC|A Chain A, Structural Basis For Nicotinamide Cleavage And Adp-Ribose
Transfer By Nad+-Dependent Sir2 HistonePROTEIN
DEACETYLASES
pdb|1SZD|A Chain A, Structural Basis For Nicotinamide Cleavage And Adp-Ribose
Transfer By Nad+-Dependent Sir2 HistonePROTEIN
DEACETYLASES
Length = 297
Score = 84.7 bits (208), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 93/192 (48%), Gaps = 36/192 (18%)
Query: 51 KILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQ------DFLKSRRVRIRYWARN 104
K++ + GAGIST GIPD+RS G GLY + + + DF +S + A+
Sbjct: 29 KVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLAKE 88
Query: 105 FVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKK--VIEMHGTAFRV 162
+P +F+P+ HY LK +D + L + TQN+D L +AG K +IE HG+
Sbjct: 89 L--YP--GNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHC 144
Query: 163 MCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDL 222
C+GC + P + +S+ ++E I F +C C +
Sbjct: 145 HCIGCG-------------KVYPPQVFKSK---------LAEHPIKDFV--KCDVCGELV 180
Query: 223 KPDIVFFGDNIP 234
KP IVFFG+++P
Sbjct: 181 KPAIVFFGEDLP 192
>pdb|1Q1A|A Chain A, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
Length = 289
Score = 84.7 bits (208), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 93/192 (48%), Gaps = 36/192 (18%)
Query: 51 KILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQ------DFLKSRRVRIRYWARN 104
K++ + GAGIST GIPD+RS G GLY + + + DF +S + A+
Sbjct: 22 KVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLAKE 81
Query: 105 FVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKK--VIEMHGTAFRV 162
+P +F+P+ HY LK +D + L + TQN+D L +AG K +IE HG+
Sbjct: 82 L--YP--GNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHC 137
Query: 163 MCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDL 222
C+GC + P + +S+ ++E I F +C C +
Sbjct: 138 HCIGCG-------------KVYPPQVFKSK---------LAEHPIKDFV--KCDVCGELV 173
Query: 223 KPDIVFFGDNIP 234
KP IVFFG+++P
Sbjct: 174 KPAIVFFGEDLP 185
>pdb|1Q17|A Chain A, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
pdb|1Q17|B Chain B, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
pdb|1Q17|C Chain C, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
Length = 300
Score = 84.7 bits (208), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 93/192 (48%), Gaps = 36/192 (18%)
Query: 51 KILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQ------DFLKSRRVRIRYWARN 104
K++ + GAGIST GIPD+RS G GLY + + + DF +S + A+
Sbjct: 32 KVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLAKE 91
Query: 105 FVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKK--VIEMHGTAFRV 162
+P +F+P+ HY LK +D + L + TQN+D L +AG K +IE HG+
Sbjct: 92 L--YP--GNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHC 147
Query: 163 MCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDL 222
C+GC + P + +S+ ++E I F +C C +
Sbjct: 148 HCIGCG-------------KVYPPQVFKSK---------LAEHPIKDF--VKCDVCGELV 183
Query: 223 KPDIVFFGDNIP 234
KP IVFFG+++P
Sbjct: 184 KPAIVFFGEDLP 195
>pdb|2OD7|A Chain A, Crystal Structure Of Yhst2 Bound To The Intermediate
Analogue Adp-Hpd, And And Aceylated H4 Peptide
pdb|2OD9|A Chain A, Structural Basis For Nicotinamide Inhibition And Base
Exchange In Sir2 Enzymes
pdb|2QQF|A Chain A, Hst2 Bound To Adp-Hpd And Acetylated Histone H4
pdb|2QQG|A Chain A, Hst2 Bound To Adp-hpd, Acetyllated Histone H4 And
Nicotinamide
Length = 308
Score = 84.3 bits (207), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 93/192 (48%), Gaps = 36/192 (18%)
Query: 51 KILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQ------DFLKSRRVRIRYWARN 104
K++ + GAGIST GIPD+RS G GLY + + + DF +S + A+
Sbjct: 40 KVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLAKE 99
Query: 105 FVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKK--VIEMHGTAFRV 162
+P +F+P+ HY LK +D + L + TQN+D L +AG K +IE HG+
Sbjct: 100 L--YP--GNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHC 155
Query: 163 MCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDL 222
C+GC + P + +S+ ++E I F +C C +
Sbjct: 156 HCIGCG-------------KVYPPQVFKSK---------LAEHPIKDFV--KCDVCGELV 191
Query: 223 KPDIVFFGDNIP 234
KP IVFFG+++P
Sbjct: 192 KPAIVFFGEDLP 203
>pdb|1Q14|A Chain A, Structure And Autoregulation Of The Yeast Hst2 Homolog Of
Sir2
Length = 361
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 93/192 (48%), Gaps = 36/192 (18%)
Query: 51 KILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQ------DFLKSRRVRIRYWARN 104
K++ + GAGIST GIPD+RS G GLY + + + DF +S + A+
Sbjct: 30 KVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLAKE 89
Query: 105 FVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKK--VIEMHGTAFRV 162
+P +F+P+ HY LK +D + L + TQN+D L +AG K +IE HG+
Sbjct: 90 L--YP--GNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHC 145
Query: 163 MCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDL 222
C+GC + P + +S+ ++E I F +C C +
Sbjct: 146 HCIGCG-------------KVYPPQVFKSK---------LAEHPIKDF--VKCDVCGELV 181
Query: 223 KPDIVFFGDNIP 234
KP IVFFG+++P
Sbjct: 182 KPAIVFFGEDLP 193
>pdb|2OD2|A Chain A, Crystal Structure Of Yhst2 I117f Mutant Bound To
Carba-Nad+ And An Acetylated H4 Peptide
Length = 308
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 92/192 (47%), Gaps = 36/192 (18%)
Query: 51 KILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQ------DFLKSRRVRIRYWARN 104
K++ + GAGIST GIPD+RS G GLY + + + DF +S + A+
Sbjct: 40 KVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLAKE 99
Query: 105 FVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKK--VIEMHGTAFRV 162
+P +F+P+ HY LK +D + L + TQN D L +AG K +IE HG+
Sbjct: 100 L--YP--GNFRPSKFHYLLKLFQDKDVLKRVYTQNFDTLERQAGVKDDLIIEAHGSFAHC 155
Query: 163 MCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDL 222
C+GC + P + +S+ ++E I F +C C +
Sbjct: 156 HCIGCG-------------KVYPPQVFKSK---------LAEHPIKDFV--KCDVCGELV 191
Query: 223 KPDIVFFGDNIP 234
KP IVFFG+++P
Sbjct: 192 KPAIVFFGEDLP 203
>pdb|4IAO|A Chain A, Crystal Structure Of Sir2 C543s Mutant In Complex With Sid
Domain Of Sir4
pdb|4IAO|B Chain B, Crystal Structure Of Sir2 C543s Mutant In Complex With Sid
Domain Of Sir4
Length = 492
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 121/246 (49%), Gaps = 28/246 (11%)
Query: 37 SDINKLKQFIEKYN---KILVVTGAGISTESGIPDYRSEGVGLYAR------SDKRPV-Q 86
S+ + FI+K + KILV+TGAG+ST GIPD+RS G Y++ D + V
Sbjct: 169 SNFFTIDHFIQKLHTARKILVLTGAGVSTSLGIPDFRSSE-GFYSKIKHLGLDDPQDVFN 227
Query: 87 FQDFLKSRRVRIRYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYK 146
+ F+ V Y N V P + P H +K ++ KL TQN+D L
Sbjct: 228 YNIFMHDPSVF--YNIANMV-LPPEKIYSPL--HSFIKMLQMKGKLLRNYTQNIDNLESY 282
Query: 147 AG--NKKVIEMHGTAFRVMCLGCDYEIDRHK-FQKI--LE-DLNPDLMIESQEMRPDG-- 198
AG K+++ HG+ C+ C + + + F KI LE L P + +E P+G
Sbjct: 283 AGISTDKLVQCHGSFATATCVTCHWNLPGERIFNKIRNLELPLCPYCYKKRREYFPEGYN 342
Query: 199 ---DVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLG 255
V S+ ++S+ P + +G LKPDI FFG+ +P + I + CD ++ +G
Sbjct: 343 NKVGVAASQGSMSE-RPPYILNSYGVLKPDITFFGEALPNKFHKSIREDILECDLLICIG 401
Query: 256 SSLTVS 261
+SL V+
Sbjct: 402 TSLKVA 407
>pdb|2HJH|A Chain A, Crystal Structure Of The Sir2 Deacetylase
pdb|2HJH|B Chain B, Crystal Structure Of The Sir2 Deacetylase
Length = 354
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 119/245 (48%), Gaps = 26/245 (10%)
Query: 37 SDINKLKQFIEKYN---KILVVTGAGISTESGIPDYRSEGVGLYAR------SDKRPVQF 87
S+ + FI+K + KILV+TGAG+ST GIPD+RS G Y++ D + V F
Sbjct: 31 SNFFTIDHFIQKLHTARKILVLTGAGVSTSLGIPDFRSSE-GFYSKIKHLGLDDPQDV-F 88
Query: 88 QDFLKSRRVRIRYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKA 147
+ + Y N V P + P H +K ++ KL TQN+D L A
Sbjct: 89 NYNIFXHDPSVFYNIANXV-LPPEKIYSPL--HSFIKXLQXKGKLLRNYTQNIDNLESYA 145
Query: 148 G--NKKVIEMHGTAFRVMCLGCDYEIDRHK-FQKI--LE-DLNPDLMIESQEMRPDG--- 198
G K+++ HG+ C+ C + + + F KI LE L P + +E P+G
Sbjct: 146 GISTDKLVQCHGSFATATCVTCHWNLPGERIFNKIRNLELPLCPYCYKKRREYFPEGYNN 205
Query: 199 --DVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGS 256
V S+ + S+ P + +G LKPDI FFG+ +P + I + CD ++ +G+
Sbjct: 206 KVGVAASQGSXSE-RPPYILNSYGVLKPDITFFGEALPNKFHKSIREDILECDLLICIGT 264
Query: 257 SLTVS 261
SL V+
Sbjct: 265 SLKVA 269
>pdb|3K35|A Chain A, Crystal Structure Of Human Sirt6
pdb|3K35|B Chain B, Crystal Structure Of Human Sirt6
pdb|3K35|C Chain C, Crystal Structure Of Human Sirt6
pdb|3K35|D Chain D, Crystal Structure Of Human Sirt6
pdb|3K35|E Chain E, Crystal Structure Of Human Sirt6
pdb|3K35|F Chain F, Crystal Structure Of Human Sirt6
Length = 318
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 106/233 (45%), Gaps = 40/233 (17%)
Query: 36 ESDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRR 95
E + +L + + + + ++ TGAGIST SGIPD+R G++ ++ D
Sbjct: 31 ERKVWELARLVWQSSSVVFHTGAGISTASGIPDFRGPH-GVWTMEERGLAPKFDTT---- 85
Query: 96 VRIRYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAG--NKKVI 153
F S +P H AL Q+E L ++++QNVDGLH ++G K+
Sbjct: 86 ---------------FESARPTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLA 130
Query: 154 EMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVP 213
E+HG F C C + R D ++ + ++ G + T++K
Sbjct: 131 ELHGNMFVEECAKCKTQYVR------------DTVVGTMGLKATGRL----CTVAKARGL 174
Query: 214 QCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVSFSKSM 266
+ C G+L+ I+ + D++P + D R+ D + LG+SL + S ++
Sbjct: 175 RA--CRGELRDTILDWEDSLPDRDLALADEASRNADLSITLGTSLQIRPSGNL 225
>pdb|3PKI|A Chain A, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|B Chain B, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|C Chain C, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|D Chain D, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|E Chain E, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|F Chain F, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKJ|A Chain A, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|B Chain B, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|C Chain C, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|D Chain D, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|E Chain E, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|F Chain F, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
Length = 355
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 106/233 (45%), Gaps = 40/233 (17%)
Query: 36 ESDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRR 95
E + +L + + + + ++ TGAGIST SGIPD+R G++ ++ D
Sbjct: 31 ERKVWELARLVWQSSSVVFHTGAGISTASGIPDFRGPH-GVWTMEERGLAPKFDTT---- 85
Query: 96 VRIRYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAG--NKKVI 153
F S +P H AL Q+E L ++++QNVDGLH ++G K+
Sbjct: 86 ---------------FESARPTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLA 130
Query: 154 EMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVP 213
E+HG F C C + R D ++ + ++ G + T++K
Sbjct: 131 ELHGNMFVEECAKCKTQYVR------------DTVVGTMGLKATGRL----CTVAKARGL 174
Query: 214 QCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVSFSKSM 266
+ C G+L+ I+ + D++P + D R+ D + LG+SL + S ++
Sbjct: 175 RA--CRGELRDTILDWEDSLPDRDLALADEASRNADLSITLGTSLQIRPSGNL 225
>pdb|1S5P|A Chain A, Structure And Substrate Binding Properties Of Cobb, A Sir2
Homolog Protein Deacetylase From Eschericia Coli
Length = 235
Score = 74.3 bits (181), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 64/125 (51%), Gaps = 22/125 (17%)
Query: 51 KILVVTGAGISTESGIPDYRS----------EGVGLYARSDKRPVQFQDFLKSRRVRIRY 100
++LV+TGAGIS ESGI +R+ E V D+ P Q F +RR +++
Sbjct: 3 RVLVLTGAGISAESGIRTFRAADGLWEEHRVEDVATPEGFDRDPELVQAFYNARRRQLQQ 62
Query: 101 WARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYI-ITQNVDGLHYKAGNKKVIEMHGTA 159
QPNA H AL +++D ++ +TQN+D LH +AGN VI MHG
Sbjct: 63 -----------PEIQPNAAHLALAKLQDALGDRFLLVTQNIDNLHERAGNTNVIHMHGEL 111
Query: 160 FRVMC 164
+V C
Sbjct: 112 LKVRC 116
>pdb|1USV|A Chain A, The Structure Of The Complex Between Aha1 And Hsp90
pdb|1USV|C Chain C, The Structure Of The Complex Between Aha1 And Hsp90
pdb|1USV|E Chain E, The Structure Of The Complex Between Aha1 And Hsp90
pdb|1USV|G Chain G, The Structure Of The Complex Between Aha1 And Hsp90
Length = 260
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 9 LFFKHFIVPPDVTSRSISFIPKHKPVEESDINKLKQFIEKYNKILVVTGAGISTESGIPD 68
L+ KHF V + R+I FIPK P + + K K I+ Y + + +T E IP+
Sbjct: 34 LYVKHFSVEGQLEFRAILFIPKRAPFDLFESKKKKNNIKLYVRRVFITDEA---EDLIPE 90
Query: 69 YRSEGVGLYARSD 81
+ S G+ D
Sbjct: 91 WLSFVKGVVDSED 103
>pdb|1USU|A Chain A, The Structure Of The Complex Between Aha1 And Hsp90
Length = 260
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 9 LFFKHFIVPPDVTSRSISFIPKHKPVEESDINKLKQFIEKYNKILVVTGAGISTESGIPD 68
L+ KHF V + R+I FIPK P + + K K I+ Y + + +T E IP+
Sbjct: 34 LYVKHFSVEGQLEFRAILFIPKRAPFDLFESKKKKNNIKLYVRRVFITDEA---EDLIPE 90
Query: 69 YRSEGVGLYARSD 81
+ S G+ D
Sbjct: 91 WLSFVKGVVDSED 103
>pdb|2CGE|A Chain A, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
Complex
pdb|2CGE|B Chain B, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
Complex
pdb|2CGE|D Chain D, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
Complex
Length = 405
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 9 LFFKHFIVPPDVTSRSISFIPKHKPVEESDINKLKQFIEKYNKILVVTGAGISTESGIPD 68
L+ KHF V + R+I FIPK P + + K K I+ Y + + +T E IP+
Sbjct: 32 LYVKHFSVEGQLEFRAILFIPKRAPFDLFESKKKKNNIKLYVRRVFITDEA---EDLIPE 88
Query: 69 YRS 71
+ S
Sbjct: 89 WLS 91
>pdb|1HK7|A Chain A, Middle Domain Of Hsp90
pdb|1HK7|B Chain B, Middle Domain Of Hsp90
Length = 288
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 9 LFFKHFIVPPDVTSRSISFIPKHKPVEESDINKLKQFIEKYNKILVVTGAGISTESGIPD 68
L+ KHF V + R+I FIPK P + + K K I+ Y + + +T E IP+
Sbjct: 32 LYVKHFSVEGQLEFRAILFIPKRAPFDLFESKKKKNNIKLYVRRVFITDEA---EDLIPE 88
Query: 69 YRSEGVGLYARSD 81
+ S G+ D
Sbjct: 89 WLSFVKGVVDSED 101
>pdb|2CG9|A Chain A, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
Complex
pdb|2CG9|B Chain B, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone
Complex
Length = 677
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 9 LFFKHFIVPPDVTSRSISFIPKHKPVEESDINKLKQFIEKYNKILVVTGAGISTESGIPD 68
L+ KHF V + R+I FIPK P + + K K I+ Y + + +T E IP+
Sbjct: 304 LYVKHFSVEGQLEFRAILFIPKRAPFDLFESKKKKNNIKLYVRRVFITDEA---EDLIPE 360
Query: 69 YRS 71
+ S
Sbjct: 361 WLS 363
>pdb|1YKG|A Chain A, Solution Structure Of The Flavodoxin-Like Domain From The
Escherichia Coli Sulfite Reductase
Length = 167
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 18/98 (18%)
Query: 117 NANHYALKQMEDNEKLSYIIT---------QNVDGLHYKAGNKKVIEMHGTAFRVMCLG- 166
NA Y KQ+ +EKL ++T + LH +KK ++ TAF V LG
Sbjct: 45 NAGDYKFKQIA-SEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGD 103
Query: 167 CDYEI---DRHKFQKILEDLNPDLMIESQEMRPDGDVE 201
YE F L +L + +++ R D DVE
Sbjct: 104 TSYEFFCQSGKDFDSKLAELGGERLLD----RVDADVE 137
>pdb|3HJC|A Chain A, Crystal Structure Of The Carboxy-Terminal Domain Of
Hsp90 From Leishmania Major, Lmjf33.0312
Length = 444
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 12 KHFIVPPDVTSRSISFIPKHKPVEESDINKLKQFIEKY 49
KHF V + RSI F+PK P + + NK + I+ Y
Sbjct: 53 KHFSVEGQLEFRSIMFVPKRAPFDMFEPNKKRNNIKLY 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,087,467
Number of Sequences: 62578
Number of extensions: 341204
Number of successful extensions: 1045
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 930
Number of HSP's gapped (non-prelim): 60
length of query: 268
length of database: 14,973,337
effective HSP length: 97
effective length of query: 171
effective length of database: 8,903,271
effective search space: 1522459341
effective search space used: 1522459341
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)