Query psy1452
Match_columns 268
No_of_seqs 143 out of 1166
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 21:59:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1452.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1452hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01409 SIRT4 SIRT4: Eukaryoti 100.0 6.4E-61 1.4E-65 426.0 20.7 224 42-267 1-224 (260)
2 KOG2683|consensus 100.0 4.6E-61 1E-65 407.0 18.7 241 27-267 23-266 (305)
3 PRK05333 NAD-dependent deacety 100.0 6E-58 1.3E-62 412.3 22.0 232 33-267 3-234 (285)
4 PRK14138 NAD-dependent deacety 100.0 6.8E-56 1.5E-60 390.5 20.5 197 40-267 2-198 (244)
5 COG0846 SIR2 NAD-dependent pro 100.0 2.3E-55 5E-60 385.2 17.7 197 39-266 2-201 (250)
6 PTZ00409 Sir2 (Silent Informat 100.0 2.7E-55 5.9E-60 391.0 17.8 206 34-267 13-219 (271)
7 cd01413 SIR2_Af2 SIR2_Af2: Arc 100.0 2.3E-55 5.1E-60 382.4 16.5 190 46-267 1-191 (222)
8 PRK00481 NAD-dependent deacety 100.0 5.4E-54 1.2E-58 378.5 18.5 195 38-267 2-197 (242)
9 cd01411 SIR2H SIR2H: Uncharact 100.0 4.8E-54 1E-58 374.8 17.4 187 42-267 1-191 (225)
10 cd01408 SIRT1 SIRT1: Eukaryoti 100.0 8E-53 1.7E-57 369.2 16.4 186 50-267 1-195 (235)
11 cd01407 SIR2-fam SIR2 family o 100.0 1.5E-52 3.3E-57 363.9 17.6 185 50-267 1-187 (218)
12 PTZ00410 NAD-dependent SIR2; P 100.0 2.4E-52 5.2E-57 380.4 18.5 203 34-267 12-225 (349)
13 cd01410 SIRT7 SIRT7: Eukaryoti 100.0 3.9E-52 8.4E-57 358.0 15.7 173 50-267 1-175 (206)
14 PTZ00408 NAD-dependent deacety 100.0 1.9E-51 4.1E-56 361.2 16.8 185 47-267 2-192 (242)
15 cd01412 SIRT5_Af1_CobB SIRT5_A 100.0 2.5E-51 5.4E-56 357.7 16.2 183 50-267 1-184 (224)
16 PF02146 SIR2: Sir2 family; I 100.0 5.6E-51 1.2E-55 343.7 12.4 175 57-262 1-178 (178)
17 cd00296 SIR2 SIR2 superfamily 100.0 6.5E-47 1.4E-51 328.9 17.5 185 50-267 1-189 (222)
18 KOG2684|consensus 100.0 1E-45 2.2E-50 336.1 15.2 199 37-268 76-301 (412)
19 KOG2682|consensus 100.0 1.8E-43 3.9E-48 300.2 9.1 199 37-267 22-232 (314)
20 KOG1905|consensus 100.0 1.4E-38 3E-43 277.9 5.9 193 33-267 39-236 (353)
21 cd01406 SIR2-like Sir2-like: P 99.5 2E-13 4.3E-18 120.2 8.6 112 50-162 1-149 (242)
22 PF13289 SIR2_2: SIR2-like dom 94.4 0.027 5.9E-07 44.6 2.3 27 134-160 2-53 (143)
23 PF07295 DUF1451: Protein of u 92.4 0.078 1.7E-06 43.2 1.9 14 159-172 110-123 (146)
24 PRK11032 hypothetical protein; 92.0 0.099 2.2E-06 43.2 2.0 14 159-172 122-135 (160)
25 smart00834 CxxC_CXXC_SSSS Puta 91.3 0.14 3E-06 32.0 1.7 13 211-223 25-37 (41)
26 PF09723 Zn-ribbon_8: Zinc rib 89.4 0.26 5.6E-06 31.3 1.8 14 159-172 3-16 (42)
27 TIGR00373 conserved hypothetic 85.9 0.68 1.5E-05 38.2 2.8 24 152-175 100-123 (158)
28 PRK06266 transcription initiat 84.8 0.68 1.5E-05 39.0 2.3 39 154-224 110-148 (178)
29 PRK00398 rpoP DNA-directed RNA 83.4 0.57 1.2E-05 30.2 1.0 13 160-172 2-14 (46)
30 PRK06260 threonine synthase; V 82.5 0.83 1.8E-05 43.2 2.1 13 160-172 2-14 (397)
31 TIGR02605 CxxC_CxxC_SSSS putat 81.9 1 2.2E-05 29.6 1.8 14 159-172 3-16 (52)
32 smart00531 TFIIE Transcription 81.2 1.2 2.5E-05 36.3 2.2 15 161-175 99-113 (147)
33 PF09538 FYDLN_acid: Protein o 80.0 1.2 2.5E-05 34.5 1.8 13 213-225 27-39 (108)
34 PF02591 DUF164: Putative zinc 79.3 2.2 4.9E-05 28.6 2.8 23 150-176 15-37 (56)
35 TIGR00354 polC DNA polymerase, 79.2 1.1 2.3E-05 46.6 1.7 19 154-172 1000-1023(1095)
36 PF09845 DUF2072: Zn-ribbon co 78.8 0.94 2E-05 36.1 0.9 10 163-172 3-12 (131)
37 TIGR02098 MJ0042_CXXC MJ0042 f 78.7 1.5 3.3E-05 26.8 1.7 12 212-223 25-36 (38)
38 PF13248 zf-ribbon_3: zinc-rib 77.9 0.97 2.1E-05 25.5 0.6 11 212-222 16-26 (26)
39 PF00205 TPP_enzyme_M: Thiamin 77.6 2.5 5.4E-05 33.3 3.2 22 239-260 69-90 (137)
40 COG1379 PHP family phosphoeste 76.8 0.65 1.4E-05 42.6 -0.6 43 153-227 238-280 (403)
41 PRK12496 hypothetical protein; 76.6 1.4 3.1E-05 36.5 1.5 12 161-172 127-138 (164)
42 PRK04023 DNA polymerase II lar 76.6 1.4 3.1E-05 46.0 1.7 38 154-226 1025-1067(1121)
43 PRK14714 DNA polymerase II lar 75.2 1.6 3.4E-05 46.7 1.7 19 154-172 1241-1264(1337)
44 PRK00564 hypA hydrogenase nick 74.8 1.5 3.3E-05 34.2 1.2 19 153-171 63-81 (117)
45 PRK07591 threonine synthase; V 74.5 2 4.2E-05 41.1 2.0 13 160-172 17-29 (421)
46 cd00729 rubredoxin_SM Rubredox 74.1 2.7 5.7E-05 25.4 1.8 11 161-171 2-12 (34)
47 COG3364 Zn-ribbon containing p 73.9 1.3 2.7E-05 33.7 0.4 11 162-172 3-13 (112)
48 PF13717 zinc_ribbon_4: zinc-r 73.4 2.8 6.1E-05 25.6 1.9 14 161-174 2-15 (36)
49 PF10083 DUF2321: Uncharacteri 71.9 2.3 5.1E-05 34.8 1.6 24 134-170 14-37 (158)
50 TIGR02300 FYDLN_acid conserved 71.2 2.9 6.2E-05 33.2 1.9 14 212-225 26-39 (129)
51 PF14353 CpXC: CpXC protein 71.1 1.2 2.7E-05 35.0 -0.2 11 162-172 2-12 (128)
52 cd00350 rubredoxin_like Rubred 70.8 3.4 7.4E-05 24.6 1.8 11 162-172 2-12 (33)
53 PF07799 DUF1643: Protein of u 70.4 6.3 0.00014 31.3 3.8 59 2-61 33-99 (136)
54 PF13240 zinc_ribbon_2: zinc-r 70.4 2 4.4E-05 23.6 0.7 11 215-225 2-12 (23)
55 PRK14873 primosome assembly pr 70.2 10 0.00022 38.5 6.0 45 118-170 357-401 (665)
56 TIGR03844 cysteate_syn cysteat 69.6 3 6.4E-05 39.6 2.0 13 160-172 1-13 (398)
57 COG1579 Zn-ribbon protein, pos 69.1 3 6.5E-05 36.8 1.8 22 150-175 190-211 (239)
58 COG2331 Uncharacterized protei 68.6 1.9 4.1E-05 31.0 0.3 20 212-231 33-57 (82)
59 smart00659 RPOLCX RNA polymera 68.5 3.9 8.6E-05 26.2 1.8 10 212-221 19-28 (44)
60 PRK06450 threonine synthase; V 68.3 3.4 7.4E-05 38.3 2.1 10 162-171 4-13 (338)
61 PF00205 TPP_enzyme_M: Thiamin 68.3 4.6 0.0001 31.8 2.6 25 39-63 1-25 (137)
62 PF05191 ADK_lid: Adenylate ki 67.3 4.5 9.8E-05 24.8 1.8 11 162-172 2-12 (36)
63 PRK09444 pntB pyridine nucleot 67.1 5.2 0.00011 38.5 3.0 43 223-265 354-399 (462)
64 COG1996 RPC10 DNA-directed RNA 66.7 3.6 7.7E-05 27.1 1.3 11 161-171 6-16 (49)
65 PRK14715 DNA polymerase II lar 66.5 3.2 7E-05 44.7 1.7 15 212-226 1557-1571(1627)
66 PF14169 YdjO: Cold-inducible 66.2 4.3 9.4E-05 27.8 1.7 19 211-229 38-56 (59)
67 TIGR00595 priA primosomal prot 65.3 15 0.00033 35.9 6.0 23 237-259 300-322 (505)
68 PRK12380 hydrogenase nickel in 65.2 3.4 7.5E-05 32.0 1.2 21 152-172 61-81 (113)
69 TIGR00100 hypA hydrogenase nic 64.7 3.6 7.8E-05 32.0 1.3 19 154-172 63-81 (115)
70 PRK05580 primosome assembly pr 63.4 15 0.00033 37.3 5.8 23 237-259 468-490 (679)
71 COG0028 IlvB Thiamine pyrophos 63.0 9.1 0.0002 37.9 4.0 28 37-64 188-215 (550)
72 PRK03824 hypA hydrogenase nick 62.9 4.3 9.3E-05 32.5 1.4 15 159-173 68-82 (135)
73 PF13719 zinc_ribbon_5: zinc-r 62.8 5 0.00011 24.6 1.4 12 161-172 2-13 (37)
74 PRK03681 hypA hydrogenase nick 62.4 4.2 9E-05 31.6 1.2 19 154-172 63-81 (114)
75 COG0549 ArcC Carbamate kinase 62.2 14 0.00031 33.5 4.7 97 13-149 148-244 (312)
76 COG1439 Predicted nucleic acid 61.8 5.1 0.00011 33.6 1.7 14 212-225 153-166 (177)
77 COG1198 PriA Primosomal protei 61.5 27 0.00058 35.9 7.1 25 38-62 285-309 (730)
78 COG1675 TFA1 Transcription ini 60.4 7.3 0.00016 32.8 2.4 12 212-223 132-143 (176)
79 PF10571 UPF0547: Uncharacteri 60.2 6.2 0.00014 22.4 1.4 10 212-221 14-23 (26)
80 PF12172 DUF35_N: Rubredoxin-l 59.3 4.1 8.9E-05 24.8 0.6 16 156-171 6-21 (37)
81 PF01155 HypA: Hydrogenase exp 59.3 3.4 7.3E-05 32.1 0.2 21 152-172 61-81 (113)
82 COG1282 PntB NAD/NADP transhyd 58.1 7 0.00015 36.7 2.1 43 223-265 356-401 (463)
83 PRK05978 hypothetical protein; 58.0 4.8 0.0001 32.9 0.9 16 212-227 52-67 (148)
84 COG1066 Sms Predicted ATP-depe 57.3 6.6 0.00014 37.5 1.8 13 160-172 6-18 (456)
85 COG1110 Reverse gyrase [DNA re 57.0 10 0.00022 40.1 3.3 37 212-257 708-744 (1187)
86 PF09986 DUF2225: Uncharacteri 56.3 3.1 6.8E-05 36.0 -0.4 14 161-174 5-18 (214)
87 PF01475 FUR: Ferric uptake re 56.1 13 0.00029 28.5 3.2 54 113-173 39-92 (120)
88 PF03604 DNA_RNApol_7kD: DNA d 56.0 10 0.00022 22.6 1.9 10 212-221 17-26 (32)
89 TIGR00746 arcC carbamate kinas 55.8 17 0.00036 33.4 4.2 50 18-73 151-200 (310)
90 TIGR00375 conserved hypothetic 55.4 6.5 0.00014 37.0 1.5 19 154-172 233-251 (374)
91 KOG4166|consensus 54.5 12 0.00025 36.0 3.0 41 25-65 273-314 (675)
92 PRK08197 threonine synthase; V 54.5 7.1 0.00015 36.9 1.6 13 160-172 6-18 (394)
93 cd00730 rubredoxin Rubredoxin; 53.6 15 0.00032 24.3 2.5 11 162-172 2-12 (50)
94 TIGR00853 pts-lac PTS system, 53.4 6.7 0.00015 29.4 1.0 16 48-63 2-17 (95)
95 COG1545 Predicted nucleic-acid 52.1 9.5 0.00021 30.8 1.8 15 157-171 25-39 (140)
96 PRK12352 putative carbamate ki 51.4 18 0.00038 33.4 3.6 52 16-73 153-204 (316)
97 TIGR02418 acolac_catab acetola 51.2 19 0.0004 35.4 4.0 29 34-62 180-208 (539)
98 PRK11788 tetratricopeptide rep 51.0 8.5 0.00018 35.3 1.5 16 212-227 368-385 (389)
99 PRK09590 celB cellobiose phosp 50.2 7.7 0.00017 29.7 0.9 14 50-63 2-15 (104)
100 COG3142 CutC Uncharacterized p 49.8 22 0.00047 31.2 3.7 32 32-63 151-183 (241)
101 PF01396 zf-C4_Topoisom: Topoi 49.4 9.2 0.0002 23.7 1.0 17 214-230 3-19 (39)
102 PRK12454 carbamate kinase-like 49.4 23 0.0005 32.6 4.0 52 14-71 150-201 (313)
103 TIGR00173 menD 2-succinyl-5-en 48.9 29 0.00062 33.1 4.8 39 34-72 196-245 (432)
104 COG1499 NMD3 NMD protein affec 48.3 15 0.00033 34.3 2.7 68 159-241 4-71 (355)
105 cd01121 Sms Sms (bacterial rad 48.3 7.9 0.00017 36.4 0.8 10 163-172 2-11 (372)
106 cd07153 Fur_like Ferric uptake 48.1 26 0.00056 26.6 3.6 52 113-173 32-85 (116)
107 PRK00945 acetyl-CoA decarbonyl 48.0 19 0.0004 30.2 2.9 25 38-62 23-47 (171)
108 PF04606 Ogr_Delta: Ogr/Delta- 48.0 9.7 0.00021 24.6 1.0 10 214-223 1-10 (47)
109 COG2051 RPS27A Ribosomal prote 47.9 6.9 0.00015 27.4 0.3 18 154-171 12-29 (67)
110 CHL00174 accD acetyl-CoA carbo 47.5 15 0.00033 33.4 2.5 16 161-176 38-53 (296)
111 PLN02569 threonine synthase 47.3 11 0.00024 36.7 1.7 12 161-172 49-60 (484)
112 PF07191 zinc-ribbons_6: zinc- 47.3 6.5 0.00014 27.9 0.1 11 212-222 30-40 (70)
113 PF08274 PhnA_Zn_Ribbon: PhnA 46.9 8.3 0.00018 22.7 0.5 10 212-221 2-11 (30)
114 PF02302 PTS_IIB: PTS system, 46.6 10 0.00022 27.3 1.1 13 51-63 1-13 (90)
115 PF00301 Rubredoxin: Rubredoxi 46.4 20 0.00043 23.4 2.2 12 161-172 1-12 (47)
116 cd05013 SIS_RpiR RpiR-like pro 46.2 13 0.00028 28.5 1.7 27 38-65 2-28 (139)
117 COG0777 AccD Acetyl-CoA carbox 45.4 14 0.00031 33.2 1.9 16 161-176 28-43 (294)
118 PRK11823 DNA repair protein Ra 45.4 12 0.00026 36.1 1.6 11 161-171 7-17 (446)
119 PF02233 PNTB: NAD(P) transhyd 44.7 5.3 0.00011 38.6 -0.9 43 223-265 355-400 (463)
120 COG1592 Rubrerythrin [Energy p 44.5 15 0.00033 30.6 1.8 11 161-171 134-144 (166)
121 COG1440 CelA Phosphotransferas 44.2 13 0.00028 28.4 1.3 14 50-63 2-15 (102)
122 cd05564 PTS_IIB_chitobiose_lic 44.2 11 0.00025 28.0 1.0 13 51-63 1-13 (96)
123 PRK14714 DNA polymerase II lar 43.7 19 0.00041 38.9 2.8 82 149-246 657-741 (1337)
124 TIGR00515 accD acetyl-CoA carb 43.1 20 0.00044 32.4 2.6 15 161-175 26-40 (285)
125 PRK09411 carbamate kinase; Rev 43.1 24 0.00053 32.2 3.1 39 27-71 154-192 (297)
126 PRK05654 acetyl-CoA carboxylas 43.1 19 0.00041 32.8 2.4 15 161-175 27-41 (292)
127 PRK05858 hypothetical protein; 43.1 27 0.00058 34.3 3.7 32 229-260 244-275 (542)
128 PRK07524 hypothetical protein; 43.0 31 0.00067 33.8 4.1 28 34-61 186-213 (535)
129 PRK08978 acetolactate synthase 42.6 31 0.00067 33.9 4.1 28 34-61 181-208 (548)
130 PF09297 zf-NADH-PPase: NADH p 42.4 11 0.00023 22.2 0.5 14 212-225 3-16 (32)
131 TIGR03254 oxalate_oxc oxalyl-C 42.4 28 0.0006 34.3 3.7 46 209-259 232-277 (554)
132 PRK12354 carbamate kinase; Rev 41.6 28 0.0006 31.9 3.3 40 27-72 153-192 (307)
133 PRK05638 threonine synthase; V 41.5 15 0.00032 35.2 1.6 11 162-172 2-12 (442)
134 COG1933 Archaeal DNA polymeras 41.1 9.8 0.00021 33.5 0.2 10 212-221 183-192 (253)
135 TIGR02720 pyruv_oxi_spxB pyruv 40.9 34 0.00073 33.9 4.0 28 34-61 185-212 (575)
136 cd04235 AAK_CK AAK_CK: Carbama 40.8 34 0.00073 31.4 3.7 43 24-72 156-198 (308)
137 TIGR00354 polC DNA polymerase, 40.7 23 0.0005 37.3 2.8 34 212-246 637-671 (1095)
138 PF14803 Nudix_N_2: Nudix N-te 40.6 11 0.00024 22.8 0.3 14 214-227 2-15 (34)
139 TIGR00416 sms DNA repair prote 40.6 14 0.00029 35.8 1.2 13 160-172 6-18 (454)
140 PRK07586 hypothetical protein; 40.6 34 0.00075 33.2 4.0 29 34-62 182-210 (514)
141 KOG4718|consensus 40.4 19 0.00041 31.2 1.8 21 112-132 132-152 (235)
142 PRK08273 thiamine pyrophosphat 40.4 37 0.0008 33.8 4.2 28 34-61 193-220 (597)
143 PF02150 RNA_POL_M_15KD: RNA p 40.3 12 0.00026 22.7 0.5 12 214-225 3-14 (35)
144 PF06906 DUF1272: Protein of u 40.2 14 0.00031 25.0 0.9 13 212-224 41-53 (57)
145 KOG2906|consensus 40.1 22 0.00049 26.9 2.0 22 152-173 12-33 (105)
146 PRK13796 GTPase YqeH; Provisio 39.8 61 0.0013 30.3 5.4 37 212-253 34-75 (365)
147 TIGR00315 cdhB CO dehydrogenas 39.5 28 0.0006 28.9 2.7 24 38-61 16-39 (162)
148 PRK08327 acetolactate synthase 39.3 37 0.0008 33.6 4.0 29 34-62 205-233 (569)
149 PRK06456 acetolactate synthase 39.1 40 0.00086 33.3 4.2 28 34-61 192-219 (572)
150 PRK07418 acetolactate synthase 39.1 33 0.00072 34.3 3.7 28 34-61 209-236 (616)
151 PRK10499 PTS system N,N'-diace 38.9 15 0.00033 28.0 1.0 14 50-63 4-17 (106)
152 TIGR03394 indol_phenyl_DC indo 38.8 27 0.00059 34.3 3.0 21 240-260 261-281 (535)
153 PRK06112 acetolactate synthase 38.8 40 0.00087 33.4 4.2 28 34-61 198-225 (578)
154 PRK07092 benzoylformate decarb 38.7 40 0.00087 32.9 4.2 28 34-61 191-218 (530)
155 PRK00762 hypA hydrogenase nick 38.6 17 0.00038 28.6 1.3 17 154-171 63-79 (124)
156 PRK07586 hypothetical protein; 37.7 33 0.00071 33.4 3.4 20 239-258 254-273 (514)
157 PRK09259 putative oxalyl-CoA d 37.7 42 0.0009 33.2 4.1 28 34-61 198-225 (569)
158 PRK07524 hypothetical protein; 37.7 28 0.00062 34.0 2.9 21 239-259 255-275 (535)
159 PRK08617 acetolactate synthase 37.6 41 0.00088 33.1 4.0 28 34-61 186-213 (552)
160 COG1773 Rubredoxin [Energy pro 37.6 43 0.00094 22.6 2.9 13 160-172 2-14 (55)
161 PRK06154 hypothetical protein; 37.4 43 0.00093 33.2 4.2 30 34-63 199-228 (565)
162 PRK08273 thiamine pyrophosphat 37.4 29 0.00062 34.6 2.9 20 240-259 265-284 (597)
163 TIGR03457 sulphoacet_xsc sulfo 37.3 44 0.00095 33.1 4.2 29 34-62 181-209 (579)
164 TIGR01504 glyox_carbo_lig glyo 37.2 44 0.00095 33.3 4.2 28 35-62 188-215 (588)
165 COG3961 Pyruvate decarboxylase 37.0 34 0.00074 33.6 3.2 38 34-71 194-243 (557)
166 TIGR03393 indolpyr_decarb indo 36.7 29 0.00062 34.1 2.8 21 240-260 265-285 (539)
167 COG3962 Acetolactate synthase 36.7 40 0.00087 32.9 3.6 30 32-61 212-241 (617)
168 PRK07525 sulfoacetaldehyde ace 36.6 30 0.00066 34.3 2.9 20 240-259 259-278 (588)
169 CHL00099 ilvB acetohydroxyacid 36.5 39 0.00085 33.5 3.7 28 34-61 202-229 (585)
170 PRK06154 hypothetical protein; 36.4 31 0.00067 34.2 3.0 21 240-260 273-293 (565)
171 PRK07418 acetolactate synthase 35.9 31 0.00068 34.5 2.9 20 240-259 283-302 (616)
172 PRK07979 acetolactate synthase 35.9 31 0.00068 34.1 2.9 22 240-261 265-286 (574)
173 COG3357 Predicted transcriptio 35.8 15 0.00032 27.5 0.4 12 161-172 58-69 (97)
174 PRK07064 hypothetical protein; 35.8 45 0.00097 32.7 4.0 28 34-61 188-215 (544)
175 PLN02470 acetolactate synthase 35.5 32 0.0007 34.1 2.9 20 241-260 273-292 (585)
176 PRK07979 acetolactate synthase 35.5 40 0.00088 33.3 3.6 29 35-63 192-220 (574)
177 PRK08329 threonine synthase; V 35.5 18 0.00039 33.5 1.1 11 162-172 2-12 (347)
178 COG3925 N-terminal domain of t 35.4 23 0.0005 26.6 1.4 15 246-260 39-53 (103)
179 PLN02470 acetolactate synthase 35.4 45 0.00098 33.1 4.0 28 34-61 200-227 (585)
180 PRK08322 acetolactate synthase 35.3 37 0.00081 33.2 3.3 23 240-262 255-277 (547)
181 TIGR01206 lysW lysine biosynth 35.3 19 0.00041 24.2 0.9 12 212-223 22-33 (54)
182 PRK08322 acetolactate synthase 35.0 51 0.0011 32.3 4.2 28 34-61 181-208 (547)
183 COG0375 HybF Zn finger protein 34.9 25 0.00054 27.5 1.6 12 160-171 69-80 (115)
184 PRK06725 acetolactate synthase 34.9 34 0.00073 34.0 2.9 21 240-260 273-293 (570)
185 PRK14715 DNA polymerase II lar 34.6 30 0.00065 37.8 2.6 17 33-49 504-520 (1627)
186 PRK12474 hypothetical protein; 34.6 50 0.0011 32.2 4.1 28 34-61 186-213 (518)
187 PRK07789 acetolactate synthase 34.5 36 0.00077 34.1 3.1 21 240-260 290-310 (612)
188 PRK06457 pyruvate dehydrogenas 34.5 35 0.00075 33.6 2.9 21 240-260 252-272 (549)
189 PRK11269 glyoxylate carboligas 34.3 51 0.0011 32.8 4.1 27 35-61 189-215 (591)
190 PRK09259 putative oxalyl-CoA d 34.2 43 0.00094 33.1 3.6 47 208-259 238-284 (569)
191 COG4161 ArtP ABC-type arginine 34.2 46 0.001 28.1 3.1 19 221-239 157-178 (242)
192 PRK06965 acetolactate synthase 34.2 45 0.00097 33.2 3.7 28 35-62 207-234 (587)
193 PRK07282 acetolactate synthase 33.9 36 0.00078 33.7 3.0 20 240-259 269-288 (566)
194 PF01286 XPA_N: XPA protein N- 33.8 24 0.00053 21.4 1.1 13 207-219 19-31 (34)
195 PRK08611 pyruvate oxidase; Pro 33.8 36 0.00078 33.7 3.0 20 240-259 260-279 (576)
196 PRK08978 acetolactate synthase 33.7 36 0.00077 33.4 2.9 20 240-259 255-274 (548)
197 PRK08199 thiamine pyrophosphat 33.7 54 0.0012 32.3 4.2 28 34-61 189-216 (557)
198 PF13453 zf-TFIIB: Transcripti 33.6 24 0.00053 21.9 1.1 14 214-227 1-14 (41)
199 PRK07789 acetolactate synthase 33.5 49 0.0011 33.1 3.9 27 35-61 217-243 (612)
200 PRK08611 pyruvate oxidase; Pro 33.4 55 0.0012 32.4 4.2 28 34-61 188-215 (576)
201 PRK08979 acetolactate synthase 33.4 37 0.00079 33.6 2.9 23 239-261 264-286 (572)
202 PRK14890 putative Zn-ribbon RN 33.4 30 0.00066 23.7 1.6 18 153-170 17-34 (59)
203 cd05005 SIS_PHI Hexulose-6-pho 33.3 45 0.00097 27.4 3.1 30 33-63 17-46 (179)
204 PRK09107 acetolactate synthase 33.3 48 0.001 33.1 3.8 27 35-61 198-224 (595)
205 PRK06457 pyruvate dehydrogenas 33.1 54 0.0012 32.2 4.1 25 37-61 183-207 (549)
206 PRK09107 acetolactate synthase 33.1 37 0.00081 33.8 3.0 21 240-260 273-293 (595)
207 CHL00099 ilvB acetohydroxyacid 33.0 38 0.00082 33.7 3.0 21 241-261 277-297 (585)
208 PRK06965 acetolactate synthase 33.0 37 0.00081 33.7 2.9 22 240-261 280-301 (587)
209 PRK06048 acetolactate synthase 32.8 38 0.00083 33.4 3.0 20 240-259 266-285 (561)
210 PRK06882 acetolactate synthase 32.8 42 0.00091 33.1 3.3 23 240-262 265-287 (574)
211 TIGR03127 RuMP_HxlB 6-phospho 32.8 49 0.0011 27.1 3.2 28 34-62 15-42 (179)
212 COG1571 Predicted DNA-binding 32.8 19 0.00042 34.4 0.8 15 211-225 349-363 (421)
213 PRK07282 acetolactate synthase 32.8 48 0.001 32.8 3.7 28 35-62 196-223 (566)
214 PRK10310 PTS system galactitol 32.5 22 0.00047 26.4 0.9 14 51-64 4-17 (94)
215 PRK06725 acetolactate synthase 32.4 51 0.0011 32.7 3.8 29 34-62 199-227 (570)
216 PRK09462 fur ferric uptake reg 32.3 57 0.0012 26.1 3.5 52 113-173 49-102 (148)
217 COG0028 IlvB Thiamine pyrophos 32.2 33 0.00072 34.0 2.4 29 30-58 71-99 (550)
218 PRK11572 copper homeostasis pr 32.1 58 0.0013 28.9 3.7 32 32-63 151-182 (248)
219 COG3809 Uncharacterized protei 32.0 21 0.00046 25.9 0.7 10 211-220 20-29 (88)
220 PRK08979 acetolactate synthase 32.0 49 0.0011 32.8 3.6 27 35-61 192-218 (572)
221 PRK08527 acetolactate synthase 31.9 40 0.00088 33.2 3.0 21 240-260 262-282 (563)
222 PF04574 DUF592: Protein of un 31.8 49 0.0011 27.1 2.9 19 38-56 135-153 (153)
223 COG1096 Predicted RNA-binding 31.7 17 0.00036 30.9 0.2 11 161-171 149-159 (188)
224 TIGR01504 glyox_carbo_lig glyo 31.7 41 0.00088 33.5 2.9 21 240-260 262-282 (588)
225 PLN02573 pyruvate decarboxylas 31.7 40 0.00088 33.5 2.9 21 240-260 284-304 (578)
226 COG0735 Fur Fe2+/Zn2+ uptake r 31.5 69 0.0015 25.8 3.8 56 112-174 51-106 (145)
227 PF04475 DUF555: Protein of un 31.4 33 0.0007 26.0 1.7 21 212-232 47-67 (102)
228 PF06676 DUF1178: Protein of u 31.3 55 0.0012 26.7 3.1 21 211-231 31-57 (148)
229 PF11023 DUF2614: Protein of u 31.2 29 0.00064 26.9 1.4 13 213-225 86-98 (114)
230 TIGR02720 pyruv_oxi_spxB pyruv 31.2 42 0.00091 33.3 3.0 20 240-259 257-276 (575)
231 TIGR00315 cdhB CO dehydrogenas 31.1 18 0.00038 30.0 0.2 18 241-258 91-111 (162)
232 PRK12286 rpmF 50S ribosomal pr 31.0 31 0.00068 23.4 1.4 18 211-228 26-43 (57)
233 PRK06456 acetolactate synthase 30.9 47 0.001 32.8 3.2 22 241-262 267-288 (572)
234 TIGR00595 priA primosomal prot 30.8 28 0.0006 34.1 1.6 16 156-171 208-223 (505)
235 PF12387 Peptidase_C74: Pestiv 30.8 30 0.00064 29.0 1.5 35 113-147 80-125 (200)
236 PRK08155 acetolactate synthase 30.7 61 0.0013 32.0 4.0 28 35-62 197-224 (564)
237 PRK06546 pyruvate dehydrogenas 30.3 83 0.0018 31.2 4.9 28 34-61 186-213 (578)
238 PRK06112 acetolactate synthase 30.3 50 0.0011 32.7 3.3 22 240-261 277-298 (578)
239 COG5349 Uncharacterized protei 30.3 19 0.00041 28.3 0.3 9 212-220 40-48 (126)
240 PRK05858 hypothetical protein; 30.2 70 0.0015 31.4 4.3 28 34-61 188-215 (542)
241 PF14419 SPOUT_MTase_2: AF2226 30.0 46 0.00099 27.6 2.4 28 36-67 107-134 (173)
242 PRK06048 acetolactate synthase 29.9 58 0.0013 32.1 3.7 28 35-62 193-220 (561)
243 PRK11302 DNA-binding transcrip 29.6 52 0.0011 29.0 3.0 31 34-65 113-143 (284)
244 PRK08527 acetolactate synthase 29.6 57 0.0012 32.2 3.6 28 35-62 189-216 (563)
245 cd04482 RPA2_OBF_like RPA2_OBF 29.4 26 0.00055 25.9 0.8 9 211-219 83-91 (91)
246 PRK09124 pyruvate dehydrogenas 29.3 84 0.0018 31.0 4.7 27 35-61 187-213 (574)
247 COG1885 Uncharacterized protei 29.3 35 0.00076 26.1 1.5 20 212-231 49-68 (115)
248 PRK06546 pyruvate dehydrogenas 29.1 48 0.001 32.9 2.9 21 240-260 258-278 (578)
249 TIGR00118 acolac_lg acetolacta 29.1 60 0.0013 31.9 3.6 27 35-61 187-213 (558)
250 PF04216 FdhE: Protein involve 29.1 25 0.00055 31.6 0.9 67 151-231 183-254 (290)
251 COG0498 ThrC Threonine synthas 29.1 36 0.00077 32.6 1.9 18 212-229 21-38 (411)
252 TIGR03457 sulphoacet_xsc sulfo 29.1 48 0.001 32.8 3.0 20 240-259 255-274 (579)
253 PRK08199 thiamine pyrophosphat 28.8 55 0.0012 32.2 3.3 22 240-261 263-284 (557)
254 PRK06276 acetolactate synthase 28.7 64 0.0014 32.0 3.8 27 35-61 189-215 (586)
255 PRK08266 hypothetical protein; 28.7 72 0.0015 31.2 4.1 28 34-61 190-217 (542)
256 TIGR03662 Chlor_Arch_YYY Chlor 28.5 67 0.0014 33.1 3.9 32 40-71 596-637 (723)
257 PF13005 zf-IS66: zinc-finger 28.4 30 0.00065 21.9 0.9 11 213-223 3-13 (47)
258 TIGR01031 rpmF_bact ribosomal 28.4 36 0.00078 22.9 1.3 18 211-228 25-42 (55)
259 COG1029 FwdB Formylmethanofura 28.4 74 0.0016 30.0 3.8 32 34-65 230-261 (429)
260 PRK03922 hypothetical protein; 28.4 38 0.00083 26.1 1.6 21 212-232 49-69 (113)
261 TIGR03254 oxalate_oxc oxalyl-C 28.3 72 0.0016 31.4 4.0 27 35-61 192-218 (554)
262 PRK12474 hypothetical protein; 28.3 56 0.0012 31.9 3.2 19 240-258 259-277 (518)
263 PLN02573 pyruvate decarboxylas 28.3 51 0.0011 32.7 3.0 28 35-62 210-237 (578)
264 PF11590 DNAPolymera_Pol: DNA 28.2 50 0.0011 20.7 1.8 23 41-63 2-24 (41)
265 TIGR03394 indol_phenyl_DC indo 28.2 47 0.001 32.7 2.7 27 36-62 188-214 (535)
266 PRK12775 putative trifunctiona 28.2 35 0.00077 36.4 1.9 13 213-225 839-851 (1006)
267 PRK07064 hypothetical protein; 28.2 51 0.0011 32.3 2.9 22 240-261 257-278 (544)
268 PRK07525 sulfoacetaldehyde ace 28.2 64 0.0014 32.0 3.7 28 34-61 185-212 (588)
269 PF06750 DiS_P_DiS: Bacterial 28.1 32 0.00069 25.6 1.1 15 161-175 33-47 (92)
270 COG4019 Uncharacterized protei 28.0 66 0.0014 25.6 2.9 24 36-59 23-46 (156)
271 PF14319 Zn_Tnp_IS91: Transpos 27.9 37 0.00081 26.1 1.5 12 160-171 41-52 (111)
272 PRK11269 glyoxylate carboligas 27.7 52 0.0011 32.7 2.9 21 240-260 263-283 (591)
273 PRK09401 reverse gyrase; Revie 27.7 50 0.0011 35.9 3.0 34 213-254 693-726 (1176)
274 PF04810 zf-Sec23_Sec24: Sec23 27.7 27 0.00059 21.6 0.6 19 212-230 2-20 (40)
275 PRK08266 hypothetical protein; 27.6 51 0.0011 32.3 2.8 22 240-261 256-277 (542)
276 PRK15482 transcriptional regul 27.6 60 0.0013 28.9 3.1 29 34-63 120-148 (285)
277 TIGR02418 acolac_catab acetola 27.5 51 0.0011 32.2 2.8 20 240-259 255-274 (539)
278 PF03119 DNA_ligase_ZBD: NAD-d 27.5 26 0.00057 20.1 0.5 10 214-223 1-10 (28)
279 PF10263 SprT-like: SprT-like 27.2 29 0.00064 27.8 0.9 15 158-172 120-134 (157)
280 PRK07710 acetolactate synthase 27.2 54 0.0012 32.4 2.9 20 240-259 274-293 (571)
281 PRK08155 acetolactate synthase 27.2 54 0.0012 32.3 3.0 22 240-261 270-291 (564)
282 PRK06466 acetolactate synthase 27.2 54 0.0012 32.4 3.0 22 240-261 265-286 (574)
283 PF04194 PDCD2_C: Programmed c 27.0 31 0.00068 28.4 1.0 10 212-221 97-106 (164)
284 PF09237 GAGA: GAGA factor; I 26.8 24 0.00053 23.5 0.3 14 210-223 22-35 (54)
285 PF14952 zf-tcix: Putative tre 26.8 31 0.00067 22.1 0.7 10 211-220 10-19 (44)
286 COG4588 AcfC Accessory coloniz 26.8 28 0.00061 30.2 0.7 33 37-69 113-145 (252)
287 TIGR03393 indolpyr_decarb indo 26.6 58 0.0013 32.0 3.0 25 37-61 193-217 (539)
288 PF09889 DUF2116: Uncharacteri 26.6 32 0.00069 23.6 0.8 17 212-228 3-19 (59)
289 TIGR00118 acolac_lg acetolacta 26.6 57 0.0012 32.1 3.0 21 240-260 260-280 (558)
290 PF05180 zf-DNL: DNL zinc fing 26.5 19 0.00041 25.3 -0.3 20 212-231 29-50 (66)
291 PRK12360 4-hydroxy-3-methylbut 26.5 71 0.0015 28.9 3.3 34 224-257 184-219 (281)
292 PRK06466 acetolactate synthase 26.4 69 0.0015 31.7 3.5 27 35-61 192-218 (574)
293 PF07754 DUF1610: Domain of un 26.4 30 0.00066 19.2 0.6 8 212-219 16-23 (24)
294 PRK09124 pyruvate dehydrogenas 26.3 58 0.0012 32.2 2.9 20 241-260 259-278 (574)
295 cd05567 PTS_IIB_mannitol PTS_I 26.1 35 0.00076 24.7 1.1 14 50-63 1-14 (87)
296 PRK11557 putative DNA-binding 25.8 70 0.0015 28.2 3.2 28 35-63 114-141 (278)
297 PRK07710 acetolactate synthase 25.8 76 0.0016 31.4 3.7 27 35-61 201-227 (571)
298 PRK12686 carbamate kinase; Rev 25.7 1.2E+02 0.0026 27.9 4.6 51 15-71 149-199 (312)
299 PRK02935 hypothetical protein; 25.6 53 0.0011 25.2 1.9 19 212-230 86-104 (110)
300 PRK07449 2-succinyl-5-enolpyru 25.5 45 0.00099 32.8 2.1 20 240-259 279-298 (568)
301 PRK06276 acetolactate synthase 25.5 62 0.0013 32.1 3.0 20 240-259 262-281 (586)
302 PRK00415 rps27e 30S ribosomal 25.3 27 0.00058 24.0 0.2 18 154-171 4-21 (59)
303 PRK03958 tRNA 2'-O-methylase; 25.0 1.1E+02 0.0024 25.7 3.9 37 222-260 78-115 (176)
304 PRK06882 acetolactate synthase 25.0 80 0.0017 31.2 3.7 27 35-61 192-218 (574)
305 TIGR03037 anthran_nbaC 3-hydro 25.0 24 0.00052 29.2 0.0 40 133-172 79-125 (159)
306 PRK05452 anaerobic nitric oxid 24.8 72 0.0016 31.0 3.3 21 152-172 416-436 (479)
307 PF05605 zf-Di19: Drought indu 24.8 98 0.0021 20.2 3.0 21 161-181 2-22 (54)
308 PRK08617 acetolactate synthase 24.6 59 0.0013 31.9 2.7 19 241-259 262-280 (552)
309 PRK08327 acetolactate synthase 24.6 44 0.00095 33.1 1.8 20 241-260 273-292 (569)
310 smart00661 RPOL9 RNA polymeras 24.5 36 0.00077 21.9 0.8 12 214-225 2-13 (52)
311 PF04981 NMD3: NMD3 family ; 24.2 87 0.0019 27.3 3.4 16 211-226 34-49 (236)
312 PRK14892 putative transcriptio 24.2 79 0.0017 24.0 2.7 23 212-234 42-64 (99)
313 PRK13936 phosphoheptose isomer 24.1 77 0.0017 26.7 3.0 27 36-63 30-56 (197)
314 COG4049 Uncharacterized protei 23.8 22 0.00048 24.1 -0.4 13 211-223 16-28 (65)
315 COG1656 Uncharacterized conser 23.6 37 0.00081 28.2 0.9 13 212-224 97-109 (165)
316 TIGR00155 pqiA_fam integral me 23.6 36 0.00078 32.4 0.9 12 212-223 33-44 (403)
317 PRK13264 3-hydroxyanthranilate 23.4 25 0.00055 29.6 -0.1 17 208-224 153-169 (177)
318 cd03361 TOPRIM_TopoIA_RevGyr T 23.2 1E+02 0.0022 25.5 3.4 34 212-253 91-124 (170)
319 PF12760 Zn_Tnp_IS1595: Transp 23.0 50 0.0011 21.0 1.2 10 212-221 18-27 (46)
320 KOG2593|consensus 23.0 41 0.00089 32.2 1.1 18 159-176 126-143 (436)
321 PRK14559 putative protein seri 22.8 45 0.00098 33.8 1.4 18 214-231 29-46 (645)
322 PF00731 AIRC: AIR carboxylase 22.8 65 0.0014 26.3 2.1 28 38-67 40-70 (150)
323 COG2176 PolC DNA polymerase II 22.7 60 0.0013 35.2 2.3 23 36-58 715-737 (1444)
324 PRK11827 hypothetical protein; 22.6 34 0.00073 23.5 0.4 14 212-225 8-21 (60)
325 COG5257 GCD11 Translation init 22.4 1.6E+02 0.0036 27.5 4.8 11 212-222 72-82 (415)
326 PF06637 PV-1: PV-1 protein (P 22.4 1.3E+02 0.0028 28.5 4.2 36 16-51 395-430 (442)
327 COG1198 PriA Primosomal protei 22.3 55 0.0012 33.7 2.0 16 213-231 476-491 (730)
328 PF11576 DUF3236: Protein of u 22.3 87 0.0019 25.5 2.7 24 37-60 23-46 (154)
329 PRK00432 30S ribosomal protein 22.0 43 0.00093 22.0 0.7 14 212-225 20-34 (50)
330 TIGR00686 phnA alkylphosphonat 22.0 49 0.0011 25.5 1.2 10 212-221 2-11 (109)
331 PRK04351 hypothetical protein; 21.8 46 0.00099 27.1 1.1 16 157-172 108-123 (149)
332 COG2888 Predicted Zn-ribbon RN 21.7 78 0.0017 21.8 2.0 8 212-219 50-57 (61)
333 PRK05580 primosome assembly pr 21.4 50 0.0011 33.7 1.4 16 156-171 376-391 (679)
334 PRK07092 benzoylformate decarb 21.3 86 0.0019 30.6 3.1 20 239-258 264-283 (530)
335 COG0761 lytB 4-Hydroxy-3-methy 21.2 82 0.0018 28.6 2.6 20 238-257 203-222 (294)
336 PRK15103 paraquat-inducible me 20.9 44 0.00095 32.0 0.9 12 212-223 30-41 (419)
337 COG3813 Uncharacterized protei 20.7 43 0.00094 23.9 0.6 11 212-222 41-51 (84)
338 TIGR01054 rgy reverse gyrase. 20.6 80 0.0017 34.4 2.8 34 213-254 693-726 (1171)
339 PRK10892 D-arabinose 5-phospha 20.4 81 0.0018 28.6 2.5 30 36-65 33-62 (326)
340 PF09788 Tmemb_55A: Transmembr 20.3 86 0.0019 27.9 2.5 9 211-219 176-184 (256)
341 TIGR01162 purE phosphoribosyla 20.1 1.3E+02 0.0027 24.9 3.3 28 39-68 42-69 (156)
342 COG4306 Uncharacterized protei 20.0 21 0.00045 28.3 -1.2 38 133-172 13-50 (160)
No 1
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=100.00 E-value=6.4e-61 Score=425.95 Aligned_cols=224 Identities=51% Similarity=0.943 Sum_probs=200.4
Q ss_pred HHHHHHhCCcEEEEeCcccccccCCCCccCCCCccccccCCCCCChHHHhhChHHHHHHHHHhhcCccccCCCCCCHHHH
Q psy1452 42 LKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRVRIRYWARNFVGWPRFSSFQPNANHY 121 (268)
Q Consensus 42 l~~~l~~a~~ivi~tGAGiS~~sGiP~fr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~H~ 121 (268)
|+++|+++++|||+||||||++|||||||+.+ |+|.+. ..++++..|..+|+.+|.||.+.+..+..+.+++||.+|+
T Consensus 1 ~~~~l~~sk~ivvlTGAGiSt~SGIPdFR~~~-Glw~~~-~~~~~~~~f~~~p~~~~~~~~~~~~~~~~~~~~~Pn~~H~ 78 (260)
T cd01409 1 LQDFVARSRRLLVLTGAGISTESGIPDYRSEG-GLYSRT-FRPMTHQEFMRSPAARQRYWARSFVGWPRFSAAQPNAAHR 78 (260)
T ss_pred ChHHHhcCCCEEEEeCceeehhhCCCCCCCcC-CcccCC-CCCCCHHHHHhCcHHHHHHHHHHHhhhhhhccCCCCHHHH
Confidence 46789999999999999999999999999998 999974 3567888999999999999987766555567899999999
Q ss_pred HHHHhHhcCCCcEEEeccCcchhhhhcCCceEEecccccceeeCCCCcccchhhHHHHHHhhCCchhhhcccCCCCCCcc
Q psy1452 122 ALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVE 201 (268)
Q Consensus 122 ~L~~L~~~~~~~~iiTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 201 (268)
+|++|+++|++.+||||||||||++||.++|+|+||++...+|+.|++.+++.++...+...+|.|........++++..
T Consensus 79 ~la~L~~~g~~~~viTQNIDgLh~~aG~~~vielHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (260)
T cd01409 79 ALAALEAAGRLHGLITQNVDGLHTKAGSRNVVELHGSLHRVVCLSCGFRTPRAELQDRLEALNPGFAEQAAGQAPDGDVD 158 (260)
T ss_pred HHHHHHHcCCCeeEEeeccchhHHHcCCCCEEEEeeecCEEEeCCCcCccCHHHHHHHHhhcCcchhhhhcccCCCcccc
Confidence 99999999999999999999999999999999999999999999999999888887778888998877665666777666
Q ss_pred cchhhhhcCCCCCCCCCCCeecccEEEeCCCCChHHHHHHHHHhhhCCEEEEEccccccccccccC
Q psy1452 202 MSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVSFSKSML 267 (268)
Q Consensus 202 ~~~~~~~~~~iP~Cp~Cgg~lrP~Vv~fgE~~~~~~~~~~~~~~~~~DlllviGTSl~V~p~~~~~ 267 (268)
.+.+......+|+||.|||.|||+||||||.+|++.++.+.+++.+||++|||||||+|+|+++++
T Consensus 159 ~~~~~~~~~~~p~C~~Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~ 224 (260)
T cd01409 159 LEDEQVAGFRVPECERCGGVLKPDVVFFGENVPRDRVVTAAARLAEADALLVLGSSLMVYSGYRFV 224 (260)
T ss_pred cchhhcccCCCCCCCCCCCEECCCEEECCCCCCHHHHHHHHHHHhcCCEEEEeCcCceecchhhHH
Confidence 555444555689999999999999999999999999999999999999999999999999999875
No 2
>KOG2683|consensus
Probab=100.00 E-value=4.6e-61 Score=406.98 Aligned_cols=241 Identities=52% Similarity=0.923 Sum_probs=235.0
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhCCcEEEEeCcccccccCCCCccCCCCccccccCCCCCChHHHhhChHHHHHHHHHhhc
Q psy1452 27 FIPKHKPVEESDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRVRIRYWARNFV 106 (268)
Q Consensus 27 ~~~~~~~~~~~~l~~l~~~l~~a~~ivi~tGAGiS~~sGiP~fr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (268)
|+|..+++.+++|+++..++..+++++|+||||||++|||||||+.+-|+|.+...+|+..++|.++...+++||+|.|.
T Consensus 23 ~VP~~~pl~e~~ikkl~~li~~~~rllvlTGAGISTEsGIPDYRS~~VGlYars~~kPI~hqdf~rSs~~RqRYWaRnf~ 102 (305)
T KOG2683|consen 23 YVPHADPLCEEDIKKLYRLIGTSDRLLVLTGAGISTESGIPDYRSEDVGLYARSAHKPIQHQDFVRSSRCRQRYWARNFV 102 (305)
T ss_pred ccCCCCCCCHHHHHHHHHHHccCCceEEEecCcccccCCCCcccCCCccceeecCCCcchHHHHhhhhHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999998899999899999999999999999999999999
Q ss_pred CccccCCCCCCHHHHHHHHhHhcCCCcEEEeccCcchhhhhcCCceEEecccccceeeCCCCcccchhhHHHHHHhhCCc
Q psy1452 107 GWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPD 186 (268)
Q Consensus 107 ~~~~~~~~~P~~~H~~L~~L~~~~~~~~iiTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~ 186 (268)
.|+.+..+.||.+|.+|++|++.|+.+++||||+|+||.|||++.+.|+||+.....|..|+...++..+++.+..+||.
T Consensus 103 gWprFs~aqPn~~H~ALs~wE~~~r~~wliTQNVD~LH~kAGS~~~tElHG~~~~VkCl~C~y~~~R~~~Qdrl~~~NP~ 182 (305)
T KOG2683|consen 103 GWPRFSAAQPNPAHYALSKWEKAGRFQWLITQNVDRLHTKAGSRMVTELHGSAYQVKCLSCGYIEPRQTFQDRLKYLNPG 182 (305)
T ss_pred CcchhhhcCCCchhHHHHHHhhcCceEEEeeccchhhhhhccccceeeeccceEEEEecccCcccchHHHHHHHHhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccc---CCCCCCcccchhhhhcCCCCCCCCCCCeecccEEEeCCCCChHHHHHHHHHhhhCCEEEEEccccccccc
Q psy1452 187 LMIESQE---MRPDGDVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVSFS 263 (268)
Q Consensus 187 ~~~~~~~---~~~~~~~~~~~~~~~~~~iP~Cp~Cgg~lrP~Vv~fgE~~~~~~~~~~~~~~~~~DlllviGTSl~V~p~ 263 (268)
|.+...+ +.||+|.++|.+...+++||.|++|||.|||+|++|||+++.+..+.+.+.+.+||-+||+||||.|+.+
T Consensus 183 fke~~~~~~~~~pDgDv~lpl~~e~gF~IPeC~~CgG~lKpdV~fFGdnvn~dkv~~~~~~v~e~dg~LvlGsSL~v~Sg 262 (305)
T KOG2683|consen 183 FKEAIVSPGHQRPDGDVELPLEFEEGFQIPECEKCGGLLKPDVTFFGDNVNKDKVTFCMEKVKECDGFLVLGSSLMVLSG 262 (305)
T ss_pred hhhhccCccccCCCCCeecchhhhhcccCCcccccCCccCCceEEecCCCChHHHHHHHHHHhccCceEEechhHHHHHH
Confidence 9998776 8999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccC
Q psy1452 264 KSML 267 (268)
Q Consensus 264 ~~~~ 267 (268)
++++
T Consensus 263 ~r~i 266 (305)
T KOG2683|consen 263 FRFI 266 (305)
T ss_pred HHHH
Confidence 8765
No 3
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=6e-58 Score=412.32 Aligned_cols=232 Identities=43% Similarity=0.816 Sum_probs=199.6
Q ss_pred CCCHHHHHHHHHHHHhCCcEEEEeCcccccccCCCCccCCCCccccccCCCCCChHHHhhChHHHHHHHHHhhcCccccC
Q psy1452 33 PVEESDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRVRIRYWARNFVGWPRFS 112 (268)
Q Consensus 33 ~~~~~~l~~l~~~l~~a~~ivi~tGAGiS~~sGiP~fr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (268)
..+..+|+.++++|+++++|||+||||||++|||||||+.+ |+|.+. .+..+..|..++..+|.||.+.+..|..+.
T Consensus 3 ~~~~~~l~~l~~~i~~~~~ivvlTGAGiS~~SGIPdFR~~~-G~w~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (285)
T PRK05333 3 DADPAALDALQDFVERHPRLFVLTGAGISTDSGIPDYRDRN-GQWKRS--PPITYQAFMGSDAARRRYWARSMVGWPVFG 79 (285)
T ss_pred cccHHHHHHHHHHHHhCCcEEEEeCCccccccCCCcccCCC-CccccC--CcccHHHHhcCchhhHHHHHHHHhhchhcc
Confidence 35667899999999999999999999999999999999998 999874 457788899999999999988776566667
Q ss_pred CCCCCHHHHHHHHhHhcCCCcEEEeccCcchhhhhcCCceEEecccccceeeCCCCcccchhhHHHHHHhhCCchhhhcc
Q psy1452 113 SFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQ 192 (268)
Q Consensus 113 ~~~P~~~H~~L~~L~~~~~~~~iiTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~~ 192 (268)
+++||.+|++|++|+++|++++||||||||||++||.++|+|+||++..++|++|++.+.+.++...+...+|.|.....
T Consensus 80 ~~~Pn~~H~aLa~L~~~g~~~~viTQNIDgLh~rAG~~~ViElHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (285)
T PRK05333 80 RAQPNAAHHALARLGAAGRIERLVTQNVDGLHQRAGSRDVIELHGRLDGVRCMGCGARHPRAEIQHVLEAANPEWLALEA 159 (285)
T ss_pred cCCCCHHHHHHHHHHHcCCcccEEecccchhHHHcCCCCEEeecCCcCEEEECCCCCcCCHHHHHHHHhhcCcchhhhhc
Confidence 89999999999999999999999999999999999999999999999999999999998877766666666777765543
Q ss_pred cCCCCCCcccchhhhhcCCCCCCCCCCCeecccEEEeCCCCChHHHHHHHHHhhhCCEEEEEccccccccccccC
Q psy1452 193 EMRPDGDVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVSFSKSML 267 (268)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~iP~Cp~Cgg~lrP~Vv~fgE~~~~~~~~~~~~~~~~~DlllviGTSl~V~p~~~~~ 267 (268)
...++++............+|+||.|||.|||+||||||.++++.++++.+.+++||++|||||||.|.|++.++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~iP~C~~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~~DlllvvGTSl~V~p~~~~~ 234 (285)
T PRK05333 160 APAPDGDADLEWAAFDHFRVPACPACGGILKPDVVFFGENVPRERVAAARAALDAADAVLVVGSSLMVYSGYRFC 234 (285)
T ss_pred ccCCCccccccccccccCCCCCCCCCCCcccCCEEEcCCCCCHHHHHHHHHHHhcCCEEEEECcCceecchhhhH
Confidence 333344433322222334589999999999999999999999999999999999999999999999999998764
No 4
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=6.8e-56 Score=390.54 Aligned_cols=197 Identities=31% Similarity=0.564 Sum_probs=174.2
Q ss_pred HHHHHHHHhCCcEEEEeCcccccccCCCCccCCCCccccccCCCCCChHHHhhChHHHHHHHHHhhcCccccCCCCCCHH
Q psy1452 40 NKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRVRIRYWARNFVGWPRFSSFQPNAN 119 (268)
Q Consensus 40 ~~l~~~l~~a~~ivi~tGAGiS~~sGiP~fr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 119 (268)
++++++|++|++|||+||||||++|||||||+.+ |+|.+....-.+...|..+|+.+|+||.+... .+.+++||.+
T Consensus 2 ~~l~~~l~~a~~ivv~tGAGiS~~SGIp~fR~~~-gl~~~~~~~~~~~~~~~~~p~~~w~~~~~~~~---~~~~~~Pn~~ 77 (244)
T PRK14138 2 KEFLELLNESRLTVTLTGAGISTPSGIPDFRGPQ-GIYKKYPQNVFDIDFFYSHPEEFYRFAKEGIF---PMLEAKPNLA 77 (244)
T ss_pred HHHHHHHHhCCCEEEEECcccchhhCCCCcCCCC-CCccCCcccccCHHHHHhCHHHHHHHHHHhhc---ccccCCCCHH
Confidence 5789999999999999999999999999999998 99997543334567788999999999986542 3458999999
Q ss_pred HHHHHHhHhcCCCcEEEeccCcchhhhhcCCceEEecccccceeeCCCCcccchhhHHHHHHhhCCchhhhcccCCCCCC
Q psy1452 120 HYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGD 199 (268)
Q Consensus 120 H~~L~~L~~~~~~~~iiTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 199 (268)
|++|++|+++|++.+||||||||||++||.++|+|+||++.+++|++|++.++..++...+
T Consensus 78 H~ala~L~~~g~~~~viTQNIDgLh~~aG~~~VielHG~~~~~~C~~C~~~~~~~~~~~~~------------------- 138 (244)
T PRK14138 78 HVLLAKLEEKGLIEAVITQNIDRLHQKAGSKKVIELHGNVEEYYCVRCGKRYTVEDVIEKL------------------- 138 (244)
T ss_pred HHHHHHHHHcCCceEEEeecccChhhHcCCCeEEEccCCcCeeEECCCCCcccHHHHHHHH-------------------
Confidence 9999999999999999999999999999999999999999999999999988765442211
Q ss_pred cccchhhhhcCCCCCCCCCCCeecccEEEeCCCCChHHHHHHHHHhhhCCEEEEEccccccccccccC
Q psy1452 200 VEMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVSFSKSML 267 (268)
Q Consensus 200 ~~~~~~~~~~~~iP~Cp~Cgg~lrP~Vv~fgE~~~~~~~~~~~~~~~~~DlllviGTSl~V~p~~~~~ 267 (268)
....+|+||.|||.|||+||||||.+|+..++.+.+++.+||++|||||||+|+|+++++
T Consensus 139 --------~~~~~p~Cp~Cgg~lrP~Vv~FgE~~p~~~~~~~~~~~~~aDl~lviGTSl~V~pa~~l~ 198 (244)
T PRK14138 139 --------EKSDVPRCDDCSGLIRPNIVFFGEALPQDALREAIRLSSKASLMIVMGSSLVVYPAAELP 198 (244)
T ss_pred --------hcCCCCCCCCCCCeECCCEEECCCcCCHHHHHHHHHHHhcCCEEEEeCcCCeeecHhHHH
Confidence 112489999999999999999999999999999999999999999999999999999874
No 5
>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription]
Probab=100.00 E-value=2.3e-55 Score=385.23 Aligned_cols=197 Identities=37% Similarity=0.672 Sum_probs=173.0
Q ss_pred HHHHHHHHHhCCcEEEEeCcccccccCCCCccCCCCcccc-ccCCC-CCChHHHhhChHHHHHHHHHhhcCccccCCCCC
Q psy1452 39 INKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYA-RSDKR-PVQFQDFLKSRRVRIRYWARNFVGWPRFSSFQP 116 (268)
Q Consensus 39 l~~l~~~l~~a~~ivi~tGAGiS~~sGiP~fr~~~~g~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P 116 (268)
++.++++|++|++|||+||||||++|||||||+.+ |+|. ++... .++...|..+|+.+|.|+.+.+. ....++|
T Consensus 2 ~~~~~~~l~~a~~ivvltGAGiSa~sGIpdFR~~~-Gl~~~~~~p~~l~s~~~f~~~p~~~~~f~~~~~~---~~~~a~P 77 (250)
T COG0846 2 LEEVAQALKEAKRIVVLTGAGISAESGIPDFRSKD-GLWSDKYDPEDLASPSGFRRDPELVWDFYSERLR---LLYLAQP 77 (250)
T ss_pred HHHHHHHHHhcCcEEEEeCCccccccCCCcccCCC-CCCCCCCCHHHHhCHHHHhhCHHHHHHHHHHHHH---hhhcCCC
Confidence 67899999999999999999999999999999888 9999 54322 35677788999999999987763 2345899
Q ss_pred CHHHHHHHHhHhcCCCcEEEeccCcchhhhhcCCceEEecccccceeeCCCCcccchhhHHHHHHhhCCchhhhcccCCC
Q psy1452 117 NANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRP 196 (268)
Q Consensus 117 ~~~H~~L~~L~~~~~~~~iiTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 196 (268)
|.+|++|++|++.+++.+|||||||+||++||.++|+||||++...+|+.|+..++..+..+..
T Consensus 78 n~~H~~la~le~~~~~~~iiTQNiD~Lhe~AGs~~Vi~lHGsl~~~~C~~C~~~~~~~~~~~~~---------------- 141 (250)
T COG0846 78 NKAHYALAELEDKGKLLRIITQNIDGLHERAGSKNVIELHGSLKRVRCSKCGNQYYDEDVIKFI---------------- 141 (250)
T ss_pred CHHHHHHHHHhhcCCceEEEecccchHHHHcCCCcEEEeccceeeeEeCCCcCccchhhhhhhc----------------
Confidence 9999999999999999999999999999999999999999999999999999887644321100
Q ss_pred CCCcccchhhhhcCCCCCCCCCCC-eecccEEEeCCCCChHHHHHHHHHhhhCCEEEEEcccccccccccc
Q psy1452 197 DGDVEMSEETISKFHVPQCPHCHG-DLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVSFSKSM 266 (268)
Q Consensus 197 ~~~~~~~~~~~~~~~iP~Cp~Cgg-~lrP~Vv~fgE~~~~~~~~~~~~~~~~~DlllviGTSl~V~p~~~~ 266 (268)
....+|+||+||+ .|||+||||||.+|.+.++.+.+.+++||++||+|||+.|+|++.+
T Consensus 142 -----------~~~~~p~C~~Cg~~~lrP~VV~fGE~lp~~~~~~~~~~~~~~d~liviGTSl~V~Paa~~ 201 (250)
T COG0846 142 -----------EDGLIPRCPKCGGPVLRPDVVWFGEPLPASFLDEALEALKEADLLIVIGTSLKVYPAAGL 201 (250)
T ss_pred -----------ccCCCCcCccCCCccccCCEEEeCCCCCHHHHHHHHHHhccCCEEEEECcceEEcChhhh
Confidence 1113899999999 9999999999999999999999999999999999999999999984
No 6
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=100.00 E-value=2.7e-55 Score=391.01 Aligned_cols=206 Identities=29% Similarity=0.527 Sum_probs=173.1
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEeCcccccccCCCCccCCCCccccccCCC-CCChHHHhhChHHHHHHHHHhhcCccccC
Q psy1452 34 VEESDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKR-PVQFQDFLKSRRVRIRYWARNFVGWPRFS 112 (268)
Q Consensus 34 ~~~~~l~~l~~~l~~a~~ivi~tGAGiS~~sGiP~fr~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (268)
..+..|+.++++|+++++|||+||||||++|||||||+++.|+|.++... -.++..|..+|+.+|.||..... ..
T Consensus 13 ~~~~~l~~l~~~l~~s~~ivvlTGAGiSteSGIPdFR~~~~Glw~~~~~~~~~t~~~f~~~p~~~~~~~~~~~~----~~ 88 (271)
T PTZ00409 13 TKSITLEDLADMIRKCKYVVALTGSGTSAESNIPSFRGPSSSIWSKYDPKIYGTIWGFWKYPEKIWEVIRDISS----DY 88 (271)
T ss_pred cccccHHHHHHHHHhCCcEEEEECCeechhhCCCcccCCCCccccCCCHHHhccHHHHHHChHHHHHHHHHhhh----cc
Confidence 44567889999999999999999999999999999999733999975322 23566788999999999865432 24
Q ss_pred CCCCCHHHHHHHHhHhcCCCcEEEeccCcchhhhhcCCceEEecccccceeeCCCCcccchhhHHHHHHhhCCchhhhcc
Q psy1452 113 SFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQ 192 (268)
Q Consensus 113 ~~~P~~~H~~L~~L~~~~~~~~iiTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~~ 192 (268)
+++||.+|++|++|++.|++.+||||||||||++||.++|+|+||++...+|++|+..++..+.. ...++.
T Consensus 89 ~a~PN~~H~aLa~Le~~g~~~~vITQNIDgLh~rAGs~~V~ElHG~l~~~~C~~C~~~~~~~~~~---~~~~~~------ 159 (271)
T PTZ00409 89 EIELNPGHVALSTLESLGYLKFVVTQNVDGLHEESGNTKVIPLHGSVFEARCCTCRKTIQLNKIM---LQKTSH------ 159 (271)
T ss_pred cCCCCHHHHHHHHHHhcCCCcEEEeccccchHhHcCCCcEEEeccCcCcceeCCCCCCcccCHHH---Hhhhhh------
Confidence 78999999999999999999999999999999999999999999999999999999876533211 000000
Q ss_pred cCCCCCCcccchhhhhcCCCCCCCCCCCeecccEEEeCCCCChHHHHHHHHHhhhCCEEEEEccccccccccccC
Q psy1452 193 EMRPDGDVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVSFSKSML 267 (268)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~iP~Cp~Cgg~lrP~Vv~fgE~~~~~~~~~~~~~~~~~DlllviGTSl~V~p~~~~~ 267 (268)
.....+|+|+ |||.|||+||||||.+|++.++.+.+++++||++|||||||+|+|+++|+
T Consensus 160 --------------~~~~~~P~C~-Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~ 219 (271)
T PTZ00409 160 --------------FMHQLPPECP-CGGIFKPNVILFGEVIPKSLLKQAEKEIDKCDLLLVVGTSSSVSTATNLC 219 (271)
T ss_pred --------------hccCCCCCCC-CCCcccCcEEEeCCcCCHHHHHHHHHHHHcCCEEEEECCCCcccCHHHHH
Confidence 0011369999 99999999999999999999999999999999999999999999999875
No 7
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=100.00 E-value=2.3e-55 Score=382.39 Aligned_cols=190 Identities=38% Similarity=0.671 Sum_probs=166.8
Q ss_pred HHhCCcEEEEeCcccccccCCCCccCCCCccccccCCCC-CChHHHhhChHHHHHHHHHhhcCccccCCCCCCHHHHHHH
Q psy1452 46 IEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRP-VQFQDFLKSRRVRIRYWARNFVGWPRFSSFQPNANHYALK 124 (268)
Q Consensus 46 l~~a~~ivi~tGAGiS~~sGiP~fr~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~H~~L~ 124 (268)
|++|++|||+||||||++|||||||+.+ |+|.+..... .+...|..+|+.+|+||.+.+. .+.+++||.+|++|+
T Consensus 1 l~~a~~ivv~tGAGiS~~sGIp~FR~~~-glw~~~~~~~~~~~~~f~~~p~~~w~~~~~~~~---~~~~a~Pn~~H~~La 76 (222)
T cd01413 1 LTKSRKTVVLTGAGISTESGIPDFRSPD-GLWKKYDPEEVASIDYFYRNPEEFWRFYKEIIL---GLLEAQPNKAHYFLA 76 (222)
T ss_pred CCCCCeEEEEECchhhhhhCCCCccCcC-CCcCCCCHHHhccHHHHhHCHHHHHHHHHHHhc---ccCCCCCCHHHHHHH
Confidence 4679999999999999999999999998 9999754322 3556678999999999988764 235899999999999
Q ss_pred HhHhcCCCcEEEeccCcchhhhhcCCceEEecccccceeeCCCCcccchhhHHHHHHhhCCchhhhcccCCCCCCcccch
Q psy1452 125 QMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSE 204 (268)
Q Consensus 125 ~L~~~~~~~~iiTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 204 (268)
+|+++|++.+|||||||+||++||.++|+|+||++..++|++|+..+++.++.
T Consensus 77 ~L~~~~~~~~viTQNiDgLh~~AG~~~v~elHG~l~~~~C~~C~~~~~~~~~~--------------------------- 129 (222)
T cd01413 77 ELEKQGIIKAIITQNIDGLHQRAGSKNVIELHGTLQTAYCVNCGSKYDLEEVK--------------------------- 129 (222)
T ss_pred HHHhcCCCeEEEEeccchhhHHcCCCcEEEccCCcCcceECCCCCCcchhHHH---------------------------
Confidence 99999999999999999999999999999999999999999999887644321
Q ss_pred hhhhcCCCCCCCCCCCeecccEEEeCCCCChHHHHHHHHHhhhCCEEEEEccccccccccccC
Q psy1452 205 ETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVSFSKSML 267 (268)
Q Consensus 205 ~~~~~~~iP~Cp~Cgg~lrP~Vv~fgE~~~~~~~~~~~~~~~~~DlllviGTSl~V~p~~~~~ 267 (268)
......+|+||.|||.|||+||||||.+|++.++++.+++.+||++|||||||+|+|+++|+
T Consensus 130 -~~~~~~~p~C~~Cgg~lrP~Vv~fgE~lp~~~~~~a~~~~~~~Dl~lvvGTSl~V~p~~~l~ 191 (222)
T cd01413 130 -YAKKHEVPRCPKCGGIIRPDVVLFGEPLPQALLREAIEAAKEADLFIVLGSSLVVYPANLLP 191 (222)
T ss_pred -HhccCCCCcCCCCCCccCCCEEECCCCCCHHHHHHHHHHHhcCCEEEEEccCCEeccHhHHH
Confidence 00112489999999999999999999999999999999999999999999999999999875
No 8
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=5.4e-54 Score=378.52 Aligned_cols=195 Identities=36% Similarity=0.664 Sum_probs=171.8
Q ss_pred HHHHHHHHHHhCCcEEEEeCcccccccCCCCccCCCCccccccCCCC-CChHHHhhChHHHHHHHHHhhcCccccCCCCC
Q psy1452 38 DINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRP-VQFQDFLKSRRVRIRYWARNFVGWPRFSSFQP 116 (268)
Q Consensus 38 ~l~~l~~~l~~a~~ivi~tGAGiS~~sGiP~fr~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P 116 (268)
+|+.++++|++|++|||+||||||++|||||||+.+ |+|.+..... .+...|..+|+.+|+||.+... .+.+++|
T Consensus 2 ~l~~l~~~i~~~~~ivi~tGAGiS~~sGip~FR~~~-gl~~~~~~~~~~~~~~~~~~p~~~w~f~~~~~~---~~~~~~P 77 (242)
T PRK00481 2 RIEELAEILDKAKRIVVLTGAGISAESGIPDFRSAN-GLWEEHRPEDVASPEGFARDPELVWKFYNERRR---QLLDAKP 77 (242)
T ss_pred hHHHHHHHHHhCCCEEEEeCCccccccCCCCccCCC-cCccCCCHHHhccHHHHhhCHHHHHHHHHHHHH---HhccCCC
Confidence 578999999999999999999999999999999987 9998644322 3456677899999999987653 2348999
Q ss_pred CHHHHHHHHhHhcCCCcEEEeccCcchhhhhcCCceEEecccccceeeCCCCcccchhhHHHHHHhhCCchhhhcccCCC
Q psy1452 117 NANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRP 196 (268)
Q Consensus 117 ~~~H~~L~~L~~~~~~~~iiTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 196 (268)
|.+|++|++|++.|++.+|||||||+||++||.++|+|+||++.+++|++|++.+...+..
T Consensus 78 n~~H~~L~~L~~~~~~~~viTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~------------------- 138 (242)
T PRK00481 78 NAAHRALAELEKLGKLVTVITQNIDGLHERAGSKNVIELHGSLLRARCTKCGQTYDLDEYL------------------- 138 (242)
T ss_pred CHHHHHHHHHHhcCCCeEEEEeccchhHHHcCCCceeeccCCcCceeeCCCCCCcChhhhc-------------------
Confidence 9999999999988999999999999999999999999999999999999998876533210
Q ss_pred CCCcccchhhhhcCCCCCCCCCCCeecccEEEeCCCCChHHHHHHHHHhhhCCEEEEEccccccccccccC
Q psy1452 197 DGDVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVSFSKSML 267 (268)
Q Consensus 197 ~~~~~~~~~~~~~~~iP~Cp~Cgg~lrP~Vv~fgE~~~~~~~~~~~~~~~~~DlllviGTSl~V~p~~~~~ 267 (268)
...+|+||.|||.|||+||||||.++++.++.+.++++++|++|||||||.|.|+++++
T Consensus 139 ------------~~~~p~C~~Cgg~lrP~Vv~fge~~~~~~~~~a~~~~~~~dl~lviGTsl~V~p~~~l~ 197 (242)
T PRK00481 139 ------------KPEPPRCPKCGGILRPDVVLFGEMLPELAIDEAYEALEEADLFIVIGTSLVVYPAAGLP 197 (242)
T ss_pred ------------cCCCCCCCCCCCccCCCeEECCCCCCHHHHHHHHHHHhcCCEEEEECCCceEcCHhHHH
Confidence 01378999999999999999999999989999999999999999999999999999875
No 9
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=100.00 E-value=4.8e-54 Score=374.76 Aligned_cols=187 Identities=31% Similarity=0.591 Sum_probs=164.1
Q ss_pred HHHHHHhCCcEEEEeCcccccccCCCCccCCCCccccccC-CC---CCChHHHhhChHHHHHHHHHhhcCccccCCCCCC
Q psy1452 42 LKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSD-KR---PVQFQDFLKSRRVRIRYWARNFVGWPRFSSFQPN 117 (268)
Q Consensus 42 l~~~l~~a~~ivi~tGAGiS~~sGiP~fr~~~~g~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~ 117 (268)
|+++|++|++|||+||||||++|||||||+.+ |+|.+.. .. ..+...|..+|+.+|+||.+.. .+.+++||
T Consensus 1 ~~~~i~~a~~ivv~tGAGiS~~sGIpdfR~~~-G~w~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~----~~~~~~Pn 75 (225)
T cd01411 1 LQHILKNAKRIVFFTGAGVSTASGIPDYRSKN-GLYNEIYKYSPEYLLSHDFLEREPEKFYQFVKENL----YFPDAKPN 75 (225)
T ss_pred ChHHHhhCCCEEEEECCccccccCCCCccCCC-cCccCcCCCChHHeecHHHHHHCHHHHHHHHHHHh----hCCCCCCC
Confidence 46788999999999999999999999999998 9999742 11 2345667799999999998753 23588999
Q ss_pred HHHHHHHHhHhcCCCcEEEeccCcchhhhhcCCceEEecccccceeeCCCCcccchhhHHHHHHhhCCchhhhcccCCCC
Q psy1452 118 ANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPD 197 (268)
Q Consensus 118 ~~H~~L~~L~~~~~~~~iiTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 197 (268)
.+|++|++|++.+ +.+|||||||+||++||.++|+|+||++.+++|++|+..+.+.++
T Consensus 76 ~~H~~La~L~~~~-~~~viTQNvD~Lh~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~--------------------- 133 (225)
T cd01411 76 IIHQKMAELEKMG-LKAVITQNIDGLHQKAGSKNVVEFHGSLYRIYCTVCGKTVDWEEY--------------------- 133 (225)
T ss_pred HHHHHHHHHHHcC-CcEEEEeccchhhhhcCCCcEEEeCCCcCeeEeCCCCCccchhhc---------------------
Confidence 9999999999877 899999999999999999999999999999999999876643210
Q ss_pred CCcccchhhhhcCCCCCCCCCCCeecccEEEeCCCCChHHHHHHHHHhhhCCEEEEEccccccccccccC
Q psy1452 198 GDVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVSFSKSML 267 (268)
Q Consensus 198 ~~~~~~~~~~~~~~iP~Cp~Cgg~lrP~Vv~fgE~~~~~~~~~~~~~~~~~DlllviGTSl~V~p~~~~~ 267 (268)
..+|+||+|||.|||+||+|||.++++.++.+.++++++|++|||||||.|+|+++++
T Consensus 134 ------------~~~p~C~~Cgg~lrP~vv~fge~~~~~~~~~~~~~~~~~DlllviGTSl~v~p~~~l~ 191 (225)
T cd01411 134 ------------LKSPYHAKCGGVIRPDIVLYEEMLNESVIEEAIQAIEKADLLVIVGTSFVVYPFAGLI 191 (225)
T ss_pred ------------CCCCCCCCCCCEeCCCEEEcCCCCCHHHHHHHHHHHhcCCEEEEECcCCeehhHHHHH
Confidence 1379999999999999999999999999999999999999999999999999998874
No 10
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=100.00 E-value=8e-53 Score=369.21 Aligned_cols=186 Identities=36% Similarity=0.614 Sum_probs=157.3
Q ss_pred CcEEEEeCcccccccCCCCccCCCCccccccCCC-------CCChHHHhhChHHHHHHHHHhhcCccccCCCCCCHHHHH
Q psy1452 50 NKILVVTGAGISTESGIPDYRSEGVGLYARSDKR-------PVQFQDFLKSRRVRIRYWARNFVGWPRFSSFQPNANHYA 122 (268)
Q Consensus 50 ~~ivi~tGAGiS~~sGiP~fr~~~~g~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~H~~ 122 (268)
++|||+||||||++|||||||+.+.|+|.+.... ..+...|..+|..+|.|+.... . .+++||.+|++
T Consensus 1 k~ivvlTGAGiS~~SGIPdfR~~~~G~w~~~~~~~~~~~~~~~~~~~f~~~p~~~~~~~~~~~---~--~~a~Pn~~H~~ 75 (235)
T cd01408 1 KKIVVLVGAGISTSAGIPDFRSPGTGLYANLARYNLPYPEAMFDISYFRKNPRPFYALAKELY---P--GQFKPSVAHYF 75 (235)
T ss_pred CcEEEEeCCccccccCCCCcCCCCCCcchhhhhccCCCHHHhcCHHHHHHChHHHHHHHHHHh---c--CcCCCCHHHHH
Confidence 5799999999999999999999855999874321 1345668889987776665432 1 48999999999
Q ss_pred HHHhHhcCCCcEEEeccCcchhhhhcC--CceEEecccccceeeCCCCcccchhhHHHHHHhhCCchhhhcccCCCCCCc
Q psy1452 123 LKQMEDNEKLSYIITQNVDGLHYKAGN--KKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDV 200 (268)
Q Consensus 123 L~~L~~~~~~~~iiTqNiD~L~~~aG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 200 (268)
|++|+++|++.+|||||||+||+|||. ++|+|+||++...+|+.|++.++...+...+
T Consensus 76 la~L~~~g~~~~viTQNiD~Lh~raG~~~~~V~elHG~l~~~~C~~C~~~~~~~~~~~~~-------------------- 135 (235)
T cd01408 76 IKLLEDKGLLLRNYTQNIDTLERVAGVPDDRIIEAHGSFATAHCIKCKHKYPGDWMREDI-------------------- 135 (235)
T ss_pred HHHHHhcCCceEEEEeccchHHHHcCCCccCEEEeCcCCCccccccCCCcCCHHHHHHHH--------------------
Confidence 999999999999999999999999995 5999999999999999999987654322111
Q ss_pred ccchhhhhcCCCCCCCCCCCeecccEEEeCCCCChHHHHHHHHHhhhCCEEEEEccccccccccccC
Q psy1452 201 EMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVSFSKSML 267 (268)
Q Consensus 201 ~~~~~~~~~~~iP~Cp~Cgg~lrP~Vv~fgE~~~~~~~~~~~~~~~~~DlllviGTSl~V~p~~~~~ 267 (268)
....+|+||.|||.|||+||||||.+|++.+..+.+++++||++|||||||+|+|+++|+
T Consensus 136 -------~~~~~p~C~~Cgg~lrP~Vv~FGE~lp~~~~~~~~~~~~~aDlllvvGTSl~V~pa~~l~ 195 (235)
T cd01408 136 -------FNQEVPKCPRCGGLVKPDIVFFGESLPSRFFSHMEEDKEEADLLIVIGTSLKVAPFASLP 195 (235)
T ss_pred -------hCCCCccCCCCCCCccCcEEECCCCCCHHHHHHHHHHHhcCCEEEEECCCCeeccHHHHH
Confidence 112379999999999999999999999988889989999999999999999999999875
No 11
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=100.00 E-value=1.5e-52 Score=363.94 Aligned_cols=185 Identities=43% Similarity=0.753 Sum_probs=162.9
Q ss_pred CcEEEEeCcccccccCCCCccCCCCccccccCCCCC--ChHHHhhChHHHHHHHHHhhcCccccCCCCCCHHHHHHHHhH
Q psy1452 50 NKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPV--QFQDFLKSRRVRIRYWARNFVGWPRFSSFQPNANHYALKQME 127 (268)
Q Consensus 50 ~~ivi~tGAGiS~~sGiP~fr~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~H~~L~~L~ 127 (268)
++|||+||||||++|||||||+.+ |+|.......+ +...|..+|+.+|.||.+... +.+++||.+|++|++|+
T Consensus 1 k~ivv~tGAGiS~~sGIpdfR~~~-G~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~----~~~~~Pn~~H~~L~~L~ 75 (218)
T cd01407 1 KRIVVLTGAGISTESGIPDFRSPG-GLWARLDPEELAFSPEAFRRDPELFWGFYRERRY----PLNAQPNPAHRALAELE 75 (218)
T ss_pred CcEEEEeCCccccccCCCcccCCC-CccccCChhhccCCHHHHHHCHHHHHHHHHHhhh----hccCCCCHHHHHHHHHH
Confidence 579999999999999999999998 99998654332 567788999999999987653 35899999999999999
Q ss_pred hcCCCcEEEeccCcchhhhhcCCceEEecccccceeeCCCCcccchhhHHHHHHhhCCchhhhcccCCCCCCcccchhhh
Q psy1452 128 DNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETI 207 (268)
Q Consensus 128 ~~~~~~~iiTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 207 (268)
+.+++.+||||||||||++||.++|+|+||++..++|+.|++.++..++.. .+
T Consensus 76 ~~~~~~~viTQNiDgL~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~---------------------------~~ 128 (218)
T cd01407 76 RKGKLKRVITQNVDGLHQRAGSPKVIELHGSLFRVRCTKCGKEYPRDELQA---------------------------DI 128 (218)
T ss_pred hcCCCeeEEEeccchhHHHcCCCCEEECcCCcCcceeCCCcCCCcHHHHhH---------------------------hh
Confidence 999999999999999999999999999999999999999999876443210 11
Q ss_pred hcCCCCCCCCCCCeecccEEEeCCCCChHHHHHHHHHhhhCCEEEEEccccccccccccC
Q psy1452 208 SKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVSFSKSML 267 (268)
Q Consensus 208 ~~~~iP~Cp~Cgg~lrP~Vv~fgE~~~~~~~~~~~~~~~~~DlllviGTSl~V~p~~~~~ 267 (268)
....+|+||.|||.|||+||||||.+|+. ++++.+.++++|++|||||||.|.|+++++
T Consensus 129 ~~~~~p~C~~Cg~~lrP~Vv~fgE~~p~~-~~~a~~~~~~~Dl~lvlGTSl~V~p~~~l~ 187 (218)
T cd01407 129 DREEVPRCPKCGGLLRPDVVFFGESLPEE-LDEAAEALAKADLLLVIGTSLQVYPAAGLP 187 (218)
T ss_pred ccCCCCcCCCCCCccCCCeEECCCCCcHH-HHHHHHHHhcCCEEEEeCCCcccccHHHHH
Confidence 22358999999999999999999999998 999999999999999999999999999875
No 12
>PTZ00410 NAD-dependent SIR2; Provisional
Probab=100.00 E-value=2.4e-52 Score=380.38 Aligned_cols=203 Identities=33% Similarity=0.563 Sum_probs=169.3
Q ss_pred CCHHHHHHHHHHHHh--CCcEEEEeCcccccccCCCCccCCCCccccccCCC-------CCChHHHhhChHHHHHHHHHh
Q psy1452 34 VEESDINKLKQFIEK--YNKILVVTGAGISTESGIPDYRSEGVGLYARSDKR-------PVQFQDFLKSRRVRIRYWARN 104 (268)
Q Consensus 34 ~~~~~l~~l~~~l~~--a~~ivi~tGAGiS~~sGiP~fr~~~~g~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 104 (268)
..+..|+.++++|++ +++|||+||||||++|||||||+++.|+|.+.... .++...|..+|+.+|.|+...
T Consensus 12 ~~~~~l~~la~~I~~~~ak~IVvlTGAGISteSGIPdFRs~~~Glw~~~~~~~~~~pe~~fs~~~f~~~P~~f~~~~r~~ 91 (349)
T PTZ00410 12 VGEPTFEGLARYIERNNVTKILVMVGAGISVAAGIPDFRSPHTGIYAKLGKYNLNSPTDAFSLTLLREKPEVFYSIAREM 91 (349)
T ss_pred cchHHHHHHHHHHHhcCCCCEEEEECcccccccCCCcccCcCCCcCccccccCCCCHHHHcCHHHHHHCHHHHHHHHHHh
Confidence 345679999999998 57999999999999999999999933999875322 124456778999888887543
Q ss_pred hcCccccCCCCCCHHHHHHHHhHhcCCCcEEEeccCcchhhhhc--CCceEEecccccceeeCCCCcccchhhHHHHHHh
Q psy1452 105 FVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAG--NKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILED 182 (268)
Q Consensus 105 ~~~~~~~~~~~P~~~H~~L~~L~~~~~~~~iiTqNiD~L~~~aG--~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~ 182 (268)
..|. .+++||.+|++|+.|++.|++.+|||||||+||++|| .++|+|+||++..++|..|++.++.......
T Consensus 92 -~~~~--~~a~Pn~aH~aLa~Le~~G~l~~vITQNIDgLh~rAG~~~~~ViElHGsl~~~~C~~C~~~~~~~~~~~~--- 165 (349)
T PTZ00410 92 -DLWP--GHFQPTAVHHFIRLLADEGRLLRCCTQNIDGLERAAGVPPSLLVEAHGSFSAASCIECHTPYDIEQAYLE--- 165 (349)
T ss_pred -hccc--CcCCCCHHHHHHHHHHhcCCcceEEecchhhhHhhcCCCcccEEEeccCCCeeEeCCCCCCcchhHHHHH---
Confidence 2333 3689999999999999999999999999999999999 4689999999999999999987654322100
Q ss_pred hCCchhhhcccCCCCCCcccchhhhhcCCCCCCCCCCCeecccEEEeCCCCChHHHHHHHHHhhhCCEEEEEcccccccc
Q psy1452 183 LNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVSF 262 (268)
Q Consensus 183 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~iP~Cp~Cgg~lrP~Vv~fgE~~~~~~~~~~~~~~~~~DlllviGTSl~V~p 262 (268)
+....+|+|+.|||.|||+||||||.+|+..++ +.+++.+||++|||||||+|+|
T Consensus 166 ------------------------~~~~~vP~C~~CgG~lRPdVVlFGE~lp~~~~~-a~~~~~~aDllLVIGTSL~V~P 220 (349)
T PTZ00410 166 ------------------------ARSGKVPHCSTCGGIVKPDVVFFGENLPDAFFN-VHHDIPEAELLLIIGTSLQVHP 220 (349)
T ss_pred ------------------------hhcCCCCCCCCCCCccCCcEEecCCcCCHHHHH-HHHHHHhCCEEEEECcCCcccC
Confidence 112248999999999999999999999998887 8899999999999999999999
Q ss_pred ccccC
Q psy1452 263 SKSML 267 (268)
Q Consensus 263 ~~~~~ 267 (268)
++.++
T Consensus 221 aa~l~ 225 (349)
T PTZ00410 221 FALLA 225 (349)
T ss_pred HHHHH
Confidence 98764
No 13
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=100.00 E-value=3.9e-52 Score=358.03 Aligned_cols=173 Identities=34% Similarity=0.547 Sum_probs=147.0
Q ss_pred CcEEEEeCcccccccCCCCccCCCCccccccCCCCCChHHHhhChHHHHHHHHHhhcCccccCCCCCCHHHHHHHHhHhc
Q psy1452 50 NKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRVRIRYWARNFVGWPRFSSFQPNANHYALKQMEDN 129 (268)
Q Consensus 50 ~~ivi~tGAGiS~~sGiP~fr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~H~~L~~L~~~ 129 (268)
++|||+||||||++|||||||+.+ |+|.+... +..++...|+| .+++||.+|++|++|++.
T Consensus 1 k~ivvltGAGiS~~SGIP~fR~~~-Glw~~~~~-------~~~~~~~~~~~-----------~~~~Pn~~H~~La~l~~~ 61 (206)
T cd01410 1 KHLVVFTGAGISTSAGIPDFRGPN-GVWTLLPE-------DKGRRRFSWRF-----------RRAEPTLTHMALVELERA 61 (206)
T ss_pred CcEEEEeCCcccHhhCCCcccCcC-CCcccCCc-------cccChHHHhhh-----------hcCCCCHHHHHHHHHHHC
Confidence 579999999999999999999998 99997432 23344333332 148999999999999999
Q ss_pred CCCcEEEeccCcchhhhhcC--CceEEecccccceeeCCCCcccchhhHHHHHHhhCCchhhhcccCCCCCCcccchhhh
Q psy1452 130 EKLSYIITQNVDGLHYKAGN--KKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETI 207 (268)
Q Consensus 130 ~~~~~iiTqNiD~L~~~aG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 207 (268)
|++.+|||||||+||++||. ++|+|+||++..++|+.|+..+...+....+ .
T Consensus 62 g~~~~viTQNID~Lh~~AG~~~~~vielHG~~~~~~C~~C~~~~~~~~~~~~~--------------------------~ 115 (206)
T cd01410 62 GLLKFVISQNVDGLHLRSGLPREKLSELHGNMFIEVCKSCGPEYVRDDVVETR--------------------------G 115 (206)
T ss_pred CCCceEEecCccchHhHcCcCcccEEEecCCcCcccCCCCCCccchHHHHHHh--------------------------h
Confidence 99999999999999999995 6899999999999999999877644332111 0
Q ss_pred hcCCCCCCCCCCCeecccEEEeCCCCChHHHHHHHHHhhhCCEEEEEccccccccccccC
Q psy1452 208 SKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVSFSKSML 267 (268)
Q Consensus 208 ~~~~iP~Cp~Cgg~lrP~Vv~fgE~~~~~~~~~~~~~~~~~DlllviGTSl~V~p~~~~~ 267 (268)
....+|+|+.|||.|||+||||||.+|...++.+.+++.+||++|||||||+|+|+++|+
T Consensus 116 ~~~~~p~C~~Cgg~lrP~VV~FgE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~ 175 (206)
T cd01410 116 DKETGRRCHACGGILKDTIVDFGERLPPENWMGAAAAACRADLFLCLGTSLQVTPAANLP 175 (206)
T ss_pred cCCCCCcCCCCcCccCCcEEECCCCCCHHHHHHHHHHHhcCCEEEEECcCceehhHHHHH
Confidence 112489999999999999999999999999999999999999999999999999999875
No 14
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=1.9e-51 Score=361.22 Aligned_cols=185 Identities=30% Similarity=0.512 Sum_probs=154.7
Q ss_pred HhCCcEEEEeCcccccccCCCCccCCCCccccccCCC-CCChHHHhhChHHHHHHHHHhhcCccccCCCCCCHHHHHHHH
Q psy1452 47 EKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKR-PVQFQDFLKSRRVRIRYWARNFVGWPRFSSFQPNANHYALKQ 125 (268)
Q Consensus 47 ~~a~~ivi~tGAGiS~~sGiP~fr~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~H~~L~~ 125 (268)
++|++|||+||||||++|||||||+.+ |+|.+.... ..+...|..+|..+|+||...... -...+++||.+|++|++
T Consensus 2 ~~~~~ivvlTGAGiS~~SGIPdFR~~~-Glw~~~~~~~~~~~~~f~~~p~~~~~f~~~~~~~-~~~~~~~Pn~~H~~L~~ 79 (242)
T PTZ00408 2 KACRCITILTGAGISAESGISTFRDGN-GLWENHRVEDVATPDAFLRNPALVQRFYNERRRA-LLSSSVKPNKAHFALAK 79 (242)
T ss_pred CCCCeEEEEeCcchhhhhCCCcccCCC-CCCCCCChhhcCCHHHHHhCHHHHHHHHHHHHHH-hccCCCCCCHHHHHHHH
Confidence 358999999999999999999999998 999875432 346678889999999999753211 01257899999999999
Q ss_pred hHhc--CCCcEEEeccCcchhhhhcCCceEEecccccceeeCCCCcccchhhHHHHHHhhCCchhhhcccCCCCCCcccc
Q psy1452 126 MEDN--EKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMS 203 (268)
Q Consensus 126 L~~~--~~~~~iiTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 203 (268)
|++. +++.+||||||||||++||.++|+|+||++..++|+.|++.+.+.+.
T Consensus 80 Le~~~~~~~~~iiTQNiDgLh~~AG~~~v~elHG~~~~~~C~~C~~~~~~~~~--------------------------- 132 (242)
T PTZ00408 80 LEREYRGGKVVVVTQNVDNLHERAGSTHVLHMHGELLKVRCTATGHVFDWTED--------------------------- 132 (242)
T ss_pred HHHhhcCCcEEEEeecccchhhHcCCCcEEEecCccceEEECCCCcccCchhh---------------------------
Confidence 9975 78899999999999999999999999999999999999987643210
Q ss_pred hhhhhcCCCCCCCCCC--CeecccEEEeCC-CCChHHHHHHHHHhhhCCEEEEEccccccccccccC
Q psy1452 204 EETISKFHVPQCPHCH--GDLKPDIVFFGD-NIPRHRMEKIDHLVRSCDGVLVLGSSLTVSFSKSML 267 (268)
Q Consensus 204 ~~~~~~~~iP~Cp~Cg--g~lrP~Vv~fgE-~~~~~~~~~~~~~~~~~DlllviGTSl~V~p~~~~~ 267 (268)
+. ..+|+||.|| |.+||+|||||| .++.+.++ +++.+||++|||||||+|+|+++++
T Consensus 133 ---~~-~~~p~C~~Cg~~g~lrP~vV~FGE~~~~~~~~~---~~~~~~DlllviGTSl~V~pa~~l~ 192 (242)
T PTZ00408 133 ---VV-HGSSRCKCCGCVGTLRPHIVWFGEMPLYMDEIE---SVMSKTDLFVAVGTSGNVYPAAGFV 192 (242)
T ss_pred ---hh-cCCCccccCCCCCCCCCCEEEcCCCCCcHHHHH---HHHHhCCEEEEEccCCccccHHHHH
Confidence 00 1379999998 999999999999 77765555 4588999999999999999999875
No 15
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=100.00 E-value=2.5e-51 Score=357.73 Aligned_cols=183 Identities=36% Similarity=0.649 Sum_probs=160.1
Q ss_pred CcEEEEeCcccccccCCCCccCCCCccccccCCCC-CChHHHhhChHHHHHHHHHhhcCccccCCCCCCHHHHHHHHhHh
Q psy1452 50 NKILVVTGAGISTESGIPDYRSEGVGLYARSDKRP-VQFQDFLKSRRVRIRYWARNFVGWPRFSSFQPNANHYALKQMED 128 (268)
Q Consensus 50 ~~ivi~tGAGiS~~sGiP~fr~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~H~~L~~L~~ 128 (268)
++|||+||||||++|||||||+.+ |+|.+..... .+...|..+|+.+|+||.+... .+.+++||.+|++|++|++
T Consensus 1 ~~ivi~tGAGiS~~sGIp~fR~~~-g~~~~~~~~~~~~~~~f~~~p~~~w~f~~~~~~---~~~~~~Pn~~H~~L~~L~~ 76 (224)
T cd01412 1 RRVVVLTGAGISAESGIPTFRDAD-GLWARFDPEELATPEAFARDPELVWEFYNWRRR---KALRAQPNPAHLALAELER 76 (224)
T ss_pred CcEEEEeCCccchhhCCCCccCcC-CCcCCCChhhcCCHHHHHHCHHHHHHHHHHHHH---HccccCCCHHHHHHHHHHh
Confidence 579999999999999999999998 9998754433 3556678999999999987653 2358899999999999999
Q ss_pred cCCCcEEEeccCcchhhhhcCCceEEecccccceeeCCCCcccchhhHHHHHHhhCCchhhhcccCCCCCCcccchhhhh
Q psy1452 129 NEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETIS 208 (268)
Q Consensus 129 ~~~~~~iiTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 208 (268)
++++.+||||||||||++||.++|+|+||++..++|+.|+..++... .+.
T Consensus 77 ~~~~~~viTqNiDgL~~~aG~~~v~e~HG~~~~~~C~~C~~~~~~~~------------------------------~~~ 126 (224)
T cd01412 77 RLPNVLLITQNVDGLHERAGSRNVIELHGSLFRVRCSSCGYVGENNE------------------------------EIP 126 (224)
T ss_pred cCCCeEEEEccchHhhHHhCCCceEeeCCCcCccccCCCCCCCCcch------------------------------hhh
Confidence 88899999999999999999999999999999999999998764321 011
Q ss_pred cCCCCCCCCCCCeecccEEEeCCCCChHHHHHHHHHhhhCCEEEEEccccccccccccC
Q psy1452 209 KFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVSFSKSML 267 (268)
Q Consensus 209 ~~~iP~Cp~Cgg~lrP~Vv~fgE~~~~~~~~~~~~~~~~~DlllviGTSl~V~p~~~~~ 267 (268)
...+|+||.|||.|||+||||||.+|+ .++.+.++++++|++|||||||.|.|+.+++
T Consensus 127 ~~~~p~C~~Cgg~lrp~Vv~fge~~p~-~~~~~~~~~~~~dl~lvlGTsl~v~p~~~l~ 184 (224)
T cd01412 127 EEELPRCPKCGGLLRPGVVWFGESLPL-ALLEAVEALAKADLFLVIGTSGVVYPAAGLP 184 (224)
T ss_pred ccCCCCCCCCCCccCCceEECCCCCHH-HHHHHHHHHHcCCEEEEECcCccchhHHHHH
Confidence 224899999999999999999999998 8999999999999999999999999998875
No 16
>PF02146 SIR2: Sir2 family; InterPro: IPR003000 These sequences represent the Sirtuin (Sir2-related) family of NAD+-dependent deacetylases. This family of enzymes is broadly conserved from bacteria to humans. In yeast, Sir2 proteins form complexes with other proteins to silence chromatin by accessing histones and deacetylating them. Sir2 proteins have been proposed to play a role in silencing, chromosome stability and ageing []. The bacterial enzyme CobB, an homologue of Sir2, is a phosphoribosyltransferase []. An in vitro ADP ribosyltransferase activity has also been associated with human members of this family []. Sir2-like enzymes employ NAD+ as a cosubstrate in deacetylation reactions [] and catalyse a reaction in which the cleavage of NAD(+)and histone and/or protein deacetylation are coupled to the formation of O-acetyl-ADP-ribose, a novel metabolite. The dependence of the reaction on both NAD(+) and the generation of this potential second messenger offers new clues to understanding the function and regulation of nuclear, cytoplasmic and mitochondrial Sir2-like enzymes []. Silent Information Regulator protein of Saccharomyces cerevisiae (Sir2) is one of several factors critical for silencing at least three loci. Among them, it is unique because it silences the rDNA as well as the mating type loci and telomeres []. Sir2 interacts in a complex with itself and with Sir3 and Sir4, two proteins that are able to interact with nucleosomes. In addition Sir2 also interacts with ubiquitination factors and/or complexes []. Homologues of Sir2 share a core domain including the GAG and NID motifs and a putative C4 Zinc finger. The regions containing these three conserved motifs are individually essential for Sir2 silencing function, as are the four cysteins []. In addition, the conserved residues HG next to the putative Zn finger have been shown to be essential for the ADP ribosyltransferase activity []. ; GO: 0008270 zinc ion binding, 0070403 NAD+ binding, 0006476 protein deacetylation; PDB: 1S5P_A 3PKI_E 3PKJ_F 3K35_A 1ICI_A 1M2K_A 1M2G_A 1M2N_B 1M2H_A 1M2J_A ....
Probab=100.00 E-value=5.6e-51 Score=343.70 Aligned_cols=175 Identities=39% Similarity=0.679 Sum_probs=137.4
Q ss_pred CcccccccCCCCccC-CCCccccccCCCC-CChHHHhhChHHHHH-HHHHhhcCccccCCCCCCHHHHHHHHhHhcCCCc
Q psy1452 57 GAGISTESGIPDYRS-EGVGLYARSDKRP-VQFQDFLKSRRVRIR-YWARNFVGWPRFSSFQPNANHYALKQMEDNEKLS 133 (268)
Q Consensus 57 GAGiS~~sGiP~fr~-~~~g~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~P~~~H~~L~~L~~~~~~~ 133 (268)
|||||++|||||||+ .+ |+|.+..... .+...++.++...|. |+......+. .+++||.+|++|++|++.+++.
T Consensus 1 GAGiS~~SGIpdfR~~~~-Glw~~~~~~~l~~~~~~~~~~~~~~~~f~~~~~~~~~--~~a~Pn~~H~~La~L~~~g~~~ 77 (178)
T PF02146_consen 1 GAGISTASGIPDFRSDPD-GLWTKYKPEELATPEAFFSDPEFVWEKFYRFRRKVIS--KDAEPNPGHRALAELEKKGKLK 77 (178)
T ss_dssp -GGGGGGGT--SSSSTTS-CHHHHCHHHHHSSHHHHHHHHHHHHHHHHHHHHHHCT--CTS---HHHHHHHHHHHTTSEE
T ss_pred CCccchhhCCCccccCCC-CcceeeeccccccccccccccchhhhHHHHHhhhhcc--ccCCCChhHHHHHHHHHhhhhc
Confidence 999999999999999 77 9999865433 345667788888887 5554332211 2899999999999999999999
Q ss_pred EEEeccCcchhhhhcCCceEEecccccceeeCCCCcccchhhHHHHHHhhCCchhhhcccCCCCCCcccchhhhhcCCCC
Q psy1452 134 YIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVP 213 (268)
Q Consensus 134 ~iiTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~iP 213 (268)
+||||||||||++||..+|+||||++..++|+.|++.+...++...+ .....|
T Consensus 78 ~viTQNIDgLh~~AG~~~vielHG~l~~~~C~~C~~~~~~~~~~~~~---------------------------~~~~~~ 130 (178)
T PF02146_consen 78 RVITQNIDGLHQKAGSPKVIELHGSLFRLRCSKCGKEYDREDIVDSI---------------------------DEEEPP 130 (178)
T ss_dssp EEEES-SSSHHHHTTESCEEETTEEEEEEEETTTSBEEEGHHHHHHH---------------------------HTTSSC
T ss_pred cceecccchhhhcccchhhHHHHhhhceeeecCCCccccchhhcccc---------------------------cccccc
Confidence 99999999999999999999999999999999999998765543222 122478
Q ss_pred CCCCCCCeecccEEEeCCCCChHHHHHHHHHhhhCCEEEEEcccccccc
Q psy1452 214 QCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVSF 262 (268)
Q Consensus 214 ~Cp~Cgg~lrP~Vv~fgE~~~~~~~~~~~~~~~~~DlllviGTSl~V~p 262 (268)
+||.||+.|||+||||||.++ +.+..+.+++++||++|||||||+|+|
T Consensus 131 ~C~~C~~~lrp~vv~fgE~~~-~~~~~~~~~~~~~Dl~lviGTSl~V~P 178 (178)
T PF02146_consen 131 RCPKCGGLLRPDVVLFGESLP-EEIEEAIEDAEEADLLLVIGTSLQVYP 178 (178)
T ss_dssp BCTTTSCBEEEEE--BTSB-S-HHHHHHHHHHHH-SEEEEESS-STSTT
T ss_pred cccccCccCCCCeeecCCCCH-HHHHHHHHHHHcCCEEEEEccCcEEEC
Confidence 999999999999999999999 788999999999999999999999998
No 17
>cd00296 SIR2 SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer. Also included in this superfamily is a group of uncharacterized Sir2-like proteins which lack certain key catalytic
Probab=100.00 E-value=6.5e-47 Score=328.94 Aligned_cols=185 Identities=40% Similarity=0.679 Sum_probs=161.4
Q ss_pred CcEEEEeCcccccccCCCCccCCCCccccccCCCCC--ChHHHhhChHHHHHHHHHhhcCccccCCCCCCHHHHHHHHhH
Q psy1452 50 NKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPV--QFQDFLKSRRVRIRYWARNFVGWPRFSSFQPNANHYALKQME 127 (268)
Q Consensus 50 ~~ivi~tGAGiS~~sGiP~fr~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~H~~L~~L~ 127 (268)
+++|++||||||++|||||||+.+.|+|.+...... +...|..+++..|.|+..... ...+++||.+|++|++|.
T Consensus 1 k~iv~~tGAGiS~~sGiP~fr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~P~~~H~~l~~l~ 77 (222)
T cd00296 1 KRVVVFTGAGISTESGIPDFRGLGTGLWTRLDPEELAFSPEAFRRDPELFWLFYKERRY---TPLDAKPNPAHRALAELE 77 (222)
T ss_pred CCEEEEeCCccccccCCCCccccccchhhcCCcccccCCHHHHHHCHHHHHHHHHHHHh---hhCcCCCCHHHHHHHHHH
Confidence 579999999999999999999987699998654432 567778899999998876643 335899999999999999
Q ss_pred hcCCCcEEEeccCcchhhhhcCC--ceEEecccccceeeCCCCcccchhhHHHHHHhhCCchhhhcccCCCCCCcccchh
Q psy1452 128 DNEKLSYIITQNVDGLHYKAGNK--KVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEE 205 (268)
Q Consensus 128 ~~~~~~~iiTqNiD~L~~~aG~~--~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 205 (268)
+.+++.+|||||||+||++||.+ +|+++||++...+|+.|+..++..++.
T Consensus 78 ~~~~~~~iiTqNiD~L~~~ag~~~~~v~~lHG~~~~~~C~~C~~~~~~~~~~---------------------------- 129 (222)
T cd00296 78 RKGKLKRIITQNVDGLHERAGSRRNRVIELHGSLDRVRCTSCGKEYPRDEVL---------------------------- 129 (222)
T ss_pred HcCCCceEEecChHHHHHHhCCCcCcEEEecCCCCccEECCCCCCcchhhhh----------------------------
Confidence 99999999999999999999976 999999999999999999876543321
Q ss_pred hhhcCCCCCCCCCCCeecccEEEeCCCCChHHHHHHHHHhhhCCEEEEEccccccccccccC
Q psy1452 206 TISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVSFSKSML 267 (268)
Q Consensus 206 ~~~~~~iP~Cp~Cgg~lrP~Vv~fgE~~~~~~~~~~~~~~~~~DlllviGTSl~V~p~~~~~ 267 (268)
....+|+||+|||.+||+|++|||.+++..+..+.+.+.++|++|||||||.|.|+++++
T Consensus 130 --~~~~~p~C~~C~~~l~p~v~~fge~~~~~~~~~~~~~~~~~d~llviGtSl~v~~~~~l~ 189 (222)
T cd00296 130 --EREKPPRCPKCGGLLRPDVVDFGEALPKEWFDRALEALLEADLVLVIGTSLTVYPAARLL 189 (222)
T ss_pred --hccCCCCCCCCCCcccCceEECCCCCCHHHHHHHHHHHhcCCEEEEECCCccccCHHHHH
Confidence 002489999999999999999999999888899999999999999999999999999875
No 18
>KOG2684|consensus
Probab=100.00 E-value=1e-45 Score=336.06 Aligned_cols=199 Identities=33% Similarity=0.593 Sum_probs=167.9
Q ss_pred HHHHHHHHHHHhCCcEEEEeCcccccccCCCCccCCCCccccccCCCC-------CChHHHhhChHHHHHHHHHhhcCcc
Q psy1452 37 SDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRP-------VQFQDFLKSRRVRIRYWARNFVGWP 109 (268)
Q Consensus 37 ~~l~~l~~~l~~a~~ivi~tGAGiS~~sGiP~fr~~~~g~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (268)
+.+..+.++++.|++|||+||||||+++||||||+.+ |+|....... +.+.-|..+|..+..|....+ .
T Consensus 76 ~t~~~~~~~l~kaKrIvVlTGAGVSvs~GIPDFRSs~-G~ys~l~~~~l~sp~~mFd~~~fr~d~~~F~~~a~~l~---~ 151 (412)
T KOG2684|consen 76 NTLADFVKLLKKAKRIVVLTGAGVSVSAGIPDFRSSE-GIYSKLKAPDLPSPQAMFDISYFRDDPSIFYRFARELK---P 151 (412)
T ss_pred ccHHHHHHHHHhcCeEEEEeCCceeeecCCCCccccc-cHHHHhhcccCCCHHHhccchhhhcccHHHHHHHHHhc---C
Confidence 5789999999999999999999999999999999998 9999876532 233345566655555544433 2
Q ss_pred ccCCCCCCHHHHHHHHhHhcCCCcEEEeccCcchhhhhcCC--ceEEecccccceeeCCCCcccchhhHHHHHHhhCCch
Q psy1452 110 RFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNK--KVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDL 187 (268)
Q Consensus 110 ~~~~~~P~~~H~~L~~L~~~~~~~~iiTqNiD~L~~~aG~~--~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~ 187 (268)
....|++.|.+|+.|.++||+.++||||||+|+++||.. +++++||++....|+.|+...+.+++.+.
T Consensus 152 --~~~~ps~~H~Fi~~L~~~gkLlR~YTQNID~LE~~aGl~~~~lVq~HGSf~t~sCt~C~~k~~~~~~~~~-------- 221 (412)
T KOG2684|consen 152 --PSNNPSAFHEFIKLLEKKGKLLRNYTQNIDGLERKAGLSTNKLVQCHGSFKTASCTKCGYKKPFEELRED-------- 221 (412)
T ss_pred --CccCCchHHHHHHHHHhcCceeEEeecccchhhhccCCCcCceEEeccccceeeecccccccChHHHHHH--------
Confidence 244599999999999999999999999999999999954 59999999999999999998876654322
Q ss_pred hhhcccCCCCCCcccchhhhhcCCCCCCCCCCC------------------eecccEEEeCCCCChHHHHHHHHHhhhCC
Q psy1452 188 MIESQEMRPDGDVEMSEETISKFHVPQCPHCHG------------------DLKPDIVFFGDNIPRHRMEKIDHLVRSCD 249 (268)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~iP~Cp~Cgg------------------~lrP~Vv~fgE~~~~~~~~~~~~~~~~~D 249 (268)
+....+|.||.|.+ .|||+||||||.+|+............+|
T Consensus 222 -------------------~~~~~vp~CP~C~~~~~~r~~~g~r~~~~~vgvlrP~IvffgE~lP~~~~~~~~~d~d~~D 282 (412)
T KOG2684|consen 222 -------------------IRNQEVPVCPDCEGKNEKRRGAGKRCESEGVGVLRPDIVFFGENLPDSFHIGVGADLDECD 282 (412)
T ss_pred -------------------HhcCcCccCcccccccccccCccccccccCccccccceEEecCCCChHHHhhhhccccccc
Confidence 23346999999965 89999999999999999988888888999
Q ss_pred EEEEEccccccccccccCC
Q psy1452 250 GVLVLGSSLTVSFSKSMLS 268 (268)
Q Consensus 250 lllviGTSl~V~p~~~~~~ 268 (268)
|+|||||||+|.|++.|++
T Consensus 283 llIviGTSLKV~pV~~iv~ 301 (412)
T KOG2684|consen 283 LLIVIGTSLKVRPVAEIVK 301 (412)
T ss_pred eEEEeCCccccccHHHHHh
Confidence 9999999999999998863
No 19
>KOG2682|consensus
Probab=100.00 E-value=1.8e-43 Score=300.17 Aligned_cols=199 Identities=33% Similarity=0.570 Sum_probs=171.3
Q ss_pred HHHHHHHHHHHh--CCcEEEEeCcccccccCCCCccCCCCccccccCCCCCCh-------HHHhhChHHHHHHHHHhhcC
Q psy1452 37 SDINKLKQFIEK--YNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQF-------QDFLKSRRVRIRYWARNFVG 107 (268)
Q Consensus 37 ~~l~~l~~~l~~--a~~ivi~tGAGiS~~sGiP~fr~~~~g~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 107 (268)
-.++.++.++++ .+++++..|||||+++||||||++..|+|.+.+...+.| ..|..||..+ |.-....
T Consensus 22 l~lekvA~~mks~~~~rVi~mVGAGISTsaGIPDFRSP~tGlY~NLqr~~LPYpEAiFel~yF~~nP~PF---~tLAkEL 98 (314)
T KOG2682|consen 22 LTLEKVARLMKSERCRRVIVMVGAGISTSAGIPDFRSPGTGLYDNLQRYHLPYPEAIFELSYFKKNPEPF---FTLAKEL 98 (314)
T ss_pred hhHHHHHHHHhhCCcceEEEEecCccccccCCCCCCCCCchhhhhHHHhcCCChhhhhccHHhhcCCchH---HHHHHHh
Confidence 458999999996 468999999999999999999999889999976555443 3456777654 3322233
Q ss_pred ccccCCCCCCHHHHHHHHhHhcCCCcEEEeccCcchhhhhc--CCceEEecccccceeeC-CCCcccchhhHHHHHHhhC
Q psy1452 108 WPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAG--NKKVIEMHGTAFRVMCL-GCDYEIDRHKFQKILEDLN 184 (268)
Q Consensus 108 ~~~~~~~~P~~~H~~L~~L~~~~~~~~iiTqNiD~L~~~aG--~~~v~elHG~~~~~~C~-~C~~~~~~~~~~~~~~~~~ 184 (268)
|+ .+.+||.+|++|+-|.++|.+.++||||||+|++.|| .+.++|.||++...+|. .|.+.++.+.++..+..
T Consensus 99 yP--gnfkPt~~HYflrLl~DK~lL~r~YTQNIDtLER~aGv~d~~lvEAHGtFa~s~Ci~~C~~~yp~e~~ka~i~~-- 174 (314)
T KOG2682|consen 99 YP--GNFKPTITHYFLRLLHDKGLLLRCYTQNIDTLERIAGVPDEDLVEAHGTFATSHCISSCRHEYPLEWMKAKIMS-- 174 (314)
T ss_pred CC--CCcCchhHHHHHHHHccccHHHHHHhccchHHHHhcCCCHHHHHHhccceeeeeehhhhcCcCCHHHHHHHHHh--
Confidence 44 5889999999999999999999999999999999999 47999999999999999 59999987766555432
Q ss_pred CchhhhcccCCCCCCcccchhhhhcCCCCCCCCCCCeecccEEEeCCCCChHHHHHHHHHhhhCCEEEEEcccccccccc
Q psy1452 185 PDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVSFSK 264 (268)
Q Consensus 185 p~~~~~~~~~~~~~~~~~~~~~~~~~~iP~Cp~Cgg~lrP~Vv~fgE~~~~~~~~~~~~~~~~~DlllviGTSl~V~p~~ 264 (268)
..+|+|+.|+|.+||+||+|||.+|..+++....+...+|++|||||||+|+|-+
T Consensus 175 -------------------------~~vpkC~vC~~lVKP~IVFfGE~LP~rF~e~~~~D~~~~dl~lV~GTSL~V~PFA 229 (314)
T KOG2682|consen 175 -------------------------EVVPKCEVCQGLVKPDIVFFGESLPARFFECMQSDFLKVDLLLVMGTSLQVQPFA 229 (314)
T ss_pred -------------------------ccCCCCchhhccccccEEEecCCccHHHHHHHhhcccccceEEEeccceeeeecc
Confidence 2489999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q psy1452 265 SML 267 (268)
Q Consensus 265 ~~~ 267 (268)
++.
T Consensus 230 sLp 232 (314)
T KOG2682|consen 230 SLP 232 (314)
T ss_pred cch
Confidence 875
No 20
>KOG1905|consensus
Probab=100.00 E-value=1.4e-38 Score=277.89 Aligned_cols=193 Identities=30% Similarity=0.527 Sum_probs=157.1
Q ss_pred CCCHHHHHHHHHHHHhCCcEEEEeCcccccccCCCCccCCCCccccccCCCCCChHHHhhChHHHHHHHHHhhcCccccC
Q psy1452 33 PVEESDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRVRIRYWARNFVGWPRFS 112 (268)
Q Consensus 33 ~~~~~~l~~l~~~l~~a~~ivi~tGAGiS~~sGiP~fr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (268)
++.+.++++|++++++++.+|++||||||++|||||||++. |+|...+...-.+ -..+.
T Consensus 39 e~l~~kv~elA~li~~sk~lvv~tGAGISTaa~IPDfRGp~-GVWTL~~kG~~~~--------------------~~df~ 97 (353)
T KOG1905|consen 39 EVLRTKVEELAQLIQQSKHLVVYTGAGISTAAGIPDFRGPQ-GVWTLQQKGKDKF--------------------GVDFS 97 (353)
T ss_pred HHHHHHHHHHHHHHhhCCcEEEEeCCccccccCCCCccCCC-ceeehhhcCcccc--------------------CCchh
Confidence 34568899999999999999999999999999999999999 9999643211000 02346
Q ss_pred CCCCCHHHHHHHHhHhcCCCcEEEeccCcchhhhhcC--CceEEecccccceeeCCCCcccchhhHHHHHHhhCCchhhh
Q psy1452 113 SFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGN--KKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIE 190 (268)
Q Consensus 113 ~~~P~~~H~~L~~L~~~~~~~~iiTqNiD~L~~~aG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~ 190 (268)
.|.|+.+|++|.+|++.|.+.+|||||+||||.|+|. +++.|+|||++..+|.+|..++-+......+.
T Consensus 98 ~ArPt~THmai~~Lhr~gll~~viSQNvDGLhlrsGlPr~~LsElHGNmfiEvC~sC~~~yvr~~~v~t~g--------- 168 (353)
T KOG1905|consen 98 EARPTVTHMAIVALHRAGLLKHVISQNVDGLHLRSGLPREKLSELHGNMFIEVCKSCRPEYVRDRVVDTVG--------- 168 (353)
T ss_pred hcCCcchHHHHHHHHHcchhhhhhhccccchhhccCCCHHHHHHHhcchHHHHhhhhcccceehhheeecc---------
Confidence 8899999999999999999999999999999999994 79999999999999999999886554321110
Q ss_pred cccCCCCCCcccchhhhhcCCCC---CCCCCCCeecccEEEeCCCCChHHHHHHHHHhhhCCEEEEEccccccccccccC
Q psy1452 191 SQEMRPDGDVEMSEETISKFHVP---QCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVSFSKSML 267 (268)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~iP---~Cp~Cgg~lrP~Vv~fgE~~~~~~~~~~~~~~~~~DlllviGTSl~V~p~~~~~ 267 (268)
+.+ ....-+.- +|..|.|.++..++-++..+|...|+.|.++.+.||++|++||||+|.|..+++
T Consensus 169 ---l~a---------t~R~ct~~k~~~~rscrg~l~d~~ldwe~~lpln~l~~a~~a~~~Ad~~lcLGTSLqI~p~g~lp 236 (353)
T KOG1905|consen 169 ---LKA---------TGRHCTGRKCRKCRSCRGTLRDFGLDWEDELPLNDLDRATKAAKRADLILCLGTSLQILPKGNLP 236 (353)
T ss_pred ---ccc---------ccccccccccccccccccchhhccccccccCCchhhHHHHHHhhhcceEEEeccceEeeeCCCcc
Confidence 000 11111233 455666778999888999999999999999999999999999999999998764
No 21
>cd01406 SIR2-like Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation.
Probab=99.46 E-value=2e-13 Score=120.23 Aligned_cols=112 Identities=22% Similarity=0.269 Sum_probs=68.1
Q ss_pred CcEEEEeCcccccccCCCCccCCCCccccccCCCCC----------Ch---HHHhhChHHHHHHHHH-hhcCccccCCCC
Q psy1452 50 NKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPV----------QF---QDFLKSRRVRIRYWAR-NFVGWPRFSSFQ 115 (268)
Q Consensus 50 ~~ivi~tGAGiS~~sGiP~fr~~~~g~~~~~~~~~~----------~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 115 (268)
+++|+|+|||+|+++|+|+|++.-..++........ .+ .+++............ .... ......+
T Consensus 1 g~lvlFiGAG~S~~~glP~W~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 79 (242)
T cd01406 1 GRVVIFVGAGVSVSSGLPDWKTLLDEIASELGLEIDGYSVEAKDENDYLELAELLEKEFGTIGIKINAVLEE-KTRPDFE 79 (242)
T ss_pred CCEEEEecCccccccCCCChHHHHHHHHHHcCCccchhhccccchhhHHHHHHHHHHHhccchhhhHHHHHh-ccCCCCC
Confidence 479999999999999999998753244443321111 11 1111111100000000 0000 1124678
Q ss_pred CCHHHHHHHHhHhcCC-CcEEEeccCcchhhhhcC----------------------CceEEecccccce
Q psy1452 116 PNANHYALKQMEDNEK-LSYIITQNVDGLHYKAGN----------------------KKVIEMHGTAFRV 162 (268)
Q Consensus 116 P~~~H~~L~~L~~~~~-~~~iiTqNiD~L~~~aG~----------------------~~v~elHG~~~~~ 162 (268)
|+..|.+|++|...++ ...|||||+|.|+|+|-. ..|+++||++...
T Consensus 80 ~~~~h~~i~~l~~~~~~~~~iiTTNyD~llE~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~klHG~~~~~ 149 (242)
T cd01406 80 PSPLHELLLRLFINNEGDVIIITTNYDRLLETALKEINKVVKVIVSVQLALSASARFNGVYKIHGDVDDD 149 (242)
T ss_pred CCHHHHHHHhchhccCCceEEEEcchHHHHHHHHHHcCCCCCcccCccccccccCCCceEEEEecccCCC
Confidence 9999999999976543 668999999999998731 2577777777754
No 22
>PF13289 SIR2_2: SIR2-like domain
Probab=94.42 E-value=0.027 Score=44.63 Aligned_cols=27 Identities=37% Similarity=0.341 Sum_probs=21.9
Q ss_pred EEEeccCcchhhhhc-------C------------------CceEEeccccc
Q psy1452 134 YIITQNVDGLHYKAG-------N------------------KKVIEMHGTAF 160 (268)
Q Consensus 134 ~iiTqNiD~L~~~aG-------~------------------~~v~elHG~~~ 160 (268)
.|||||+|.|.|+|- . ..|+++||++.
T Consensus 2 ~iiTtNyD~llE~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~klHG~~~ 53 (143)
T PF13289_consen 2 TIITTNYDDLLEKALEEAGIPFIVWISDEDFSNESRSSSGRPPIYKLHGSLD 53 (143)
T ss_pred EEEECCHhHHHHHHHHHcCCCceeeeccccccccccccCCCcEEEEEecCcc
Confidence 689999999999873 1 25899999993
No 23
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=92.43 E-value=0.078 Score=43.23 Aligned_cols=14 Identities=21% Similarity=0.624 Sum_probs=11.2
Q ss_pred ccceeeCCCCcccc
Q psy1452 159 AFRVMCLGCDYEID 172 (268)
Q Consensus 159 ~~~~~C~~C~~~~~ 172 (268)
...++|.+|++...
T Consensus 110 ~G~l~C~~Cg~~~~ 123 (146)
T PF07295_consen 110 PGTLVCENCGHEVE 123 (146)
T ss_pred CceEecccCCCEEE
Confidence 45789999999764
No 24
>PRK11032 hypothetical protein; Provisional
Probab=91.99 E-value=0.099 Score=43.22 Aligned_cols=14 Identities=14% Similarity=0.418 Sum_probs=11.0
Q ss_pred ccceeeCCCCcccc
Q psy1452 159 AFRVMCLGCDYEID 172 (268)
Q Consensus 159 ~~~~~C~~C~~~~~ 172 (268)
+..++|.+|++...
T Consensus 122 ~G~LvC~~Cg~~~~ 135 (160)
T PRK11032 122 LGNLVCEKCHHHLA 135 (160)
T ss_pred cceEEecCCCCEEE
Confidence 45689999998763
No 25
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=91.26 E-value=0.14 Score=31.95 Aligned_cols=13 Identities=38% Similarity=1.188 Sum_probs=10.4
Q ss_pred CCCCCCCCCCeec
Q psy1452 211 HVPQCPHCHGDLK 223 (268)
Q Consensus 211 ~iP~Cp~Cgg~lr 223 (268)
....||.||+.++
T Consensus 25 ~~~~CP~Cg~~~~ 37 (41)
T smart00834 25 PLATCPECGGDVR 37 (41)
T ss_pred CCCCCCCCCCcce
Confidence 3678999999665
No 26
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=89.43 E-value=0.26 Score=31.33 Aligned_cols=14 Identities=21% Similarity=0.631 Sum_probs=11.0
Q ss_pred ccceeeCCCCcccc
Q psy1452 159 AFRVMCLGCDYEID 172 (268)
Q Consensus 159 ~~~~~C~~C~~~~~ 172 (268)
++..+|.+|++.+.
T Consensus 3 ~Yey~C~~Cg~~fe 16 (42)
T PF09723_consen 3 IYEYRCEECGHEFE 16 (42)
T ss_pred CEEEEeCCCCCEEE
Confidence 45789999998764
No 27
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=85.93 E-value=0.68 Score=38.20 Aligned_cols=24 Identities=8% Similarity=0.166 Sum_probs=16.5
Q ss_pred eEEecccccceeeCCCCcccchhh
Q psy1452 152 VIEMHGTAFRVMCLGCDYEIDRHK 175 (268)
Q Consensus 152 v~elHG~~~~~~C~~C~~~~~~~~ 175 (268)
-++-..+-....|+.|+.+++..+
T Consensus 100 ~l~~e~~~~~Y~Cp~c~~r~tf~e 123 (158)
T TIGR00373 100 KLEFETNNMFFICPNMCVRFTFNE 123 (158)
T ss_pred HHhhccCCCeEECCCCCcEeeHHH
Confidence 334455556678999999886544
No 28
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=84.83 E-value=0.68 Score=39.00 Aligned_cols=39 Identities=18% Similarity=0.330 Sum_probs=26.6
Q ss_pred EecccccceeeCCCCcccchhhHHHHHHhhCCchhhhcccCCCCCCcccchhhhhcCCCCCCCCCCCeecc
Q psy1452 154 EMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDLKP 224 (268)
Q Consensus 154 elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~iP~Cp~Cgg~lrP 224 (268)
+--.+-...+|+.|+.+++..+.. .....||.||+.|..
T Consensus 110 ~~e~~~~~Y~Cp~C~~rytf~eA~--------------------------------~~~F~Cp~Cg~~L~~ 148 (178)
T PRK06266 110 EEEENNMFFFCPNCHIRFTFDEAM--------------------------------EYGFRCPQCGEMLEE 148 (178)
T ss_pred hhccCCCEEECCCCCcEEeHHHHh--------------------------------hcCCcCCCCCCCCee
Confidence 334444567899999988754421 025799999999764
No 29
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=83.42 E-value=0.57 Score=30.21 Aligned_cols=13 Identities=23% Similarity=0.618 Sum_probs=10.0
Q ss_pred cceeeCCCCcccc
Q psy1452 160 FRVMCLGCDYEID 172 (268)
Q Consensus 160 ~~~~C~~C~~~~~ 172 (268)
...+|.+|+....
T Consensus 2 ~~y~C~~CG~~~~ 14 (46)
T PRK00398 2 AEYKCARCGREVE 14 (46)
T ss_pred CEEECCCCCCEEE
Confidence 3578999998764
No 30
>PRK06260 threonine synthase; Validated
Probab=82.46 E-value=0.83 Score=43.20 Aligned_cols=13 Identities=31% Similarity=0.884 Sum_probs=10.7
Q ss_pred cceeeCCCCcccc
Q psy1452 160 FRVMCLGCDYEID 172 (268)
Q Consensus 160 ~~~~C~~C~~~~~ 172 (268)
..++|..|++.+.
T Consensus 2 ~~~~C~~cg~~~~ 14 (397)
T PRK06260 2 YWLKCIECGKEYD 14 (397)
T ss_pred CEEEECCCCCCCC
Confidence 4589999999874
No 31
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=81.93 E-value=1 Score=29.62 Aligned_cols=14 Identities=14% Similarity=0.622 Sum_probs=10.8
Q ss_pred ccceeeCCCCcccc
Q psy1452 159 AFRVMCLGCDYEID 172 (268)
Q Consensus 159 ~~~~~C~~C~~~~~ 172 (268)
++..+|.+|++.+.
T Consensus 3 ~Yey~C~~Cg~~fe 16 (52)
T TIGR02605 3 IYEYRCTACGHRFE 16 (52)
T ss_pred CEEEEeCCCCCEeE
Confidence 35679999998764
No 32
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=81.16 E-value=1.2 Score=36.28 Aligned_cols=15 Identities=13% Similarity=0.277 Sum_probs=11.4
Q ss_pred ceeeCCCCcccchhh
Q psy1452 161 RVMCLGCDYEIDRHK 175 (268)
Q Consensus 161 ~~~C~~C~~~~~~~~ 175 (268)
...|+.|+..+...+
T Consensus 99 ~Y~Cp~C~~~y~~~e 113 (147)
T smart00531 99 YYKCPNCQSKYTFLE 113 (147)
T ss_pred EEECcCCCCEeeHHH
Confidence 468999999886443
No 33
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=79.97 E-value=1.2 Score=34.51 Aligned_cols=13 Identities=31% Similarity=0.999 Sum_probs=10.5
Q ss_pred CCCCCCCCeeccc
Q psy1452 213 PQCPHCHGDLKPD 225 (268)
Q Consensus 213 P~Cp~Cgg~lrP~ 225 (268)
..||+||....|.
T Consensus 27 ivCP~CG~~~~~~ 39 (108)
T PF09538_consen 27 IVCPKCGTEFPPE 39 (108)
T ss_pred ccCCCCCCccCcc
Confidence 3599999887777
No 34
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=79.31 E-value=2.2 Score=28.59 Aligned_cols=23 Identities=26% Similarity=0.648 Sum_probs=16.4
Q ss_pred CceEEecccccceeeCCCCcccchhhH
Q psy1452 150 KKVIEMHGTAFRVMCLGCDYEIDRHKF 176 (268)
Q Consensus 150 ~~v~elHG~~~~~~C~~C~~~~~~~~~ 176 (268)
.-|..++|. .|+.|+-..+...+
T Consensus 15 ~~va~v~~~----~C~gC~~~l~~~~~ 37 (56)
T PF02591_consen 15 VAVARVEGG----TCSGCHMELPPQEL 37 (56)
T ss_pred cEEEEeeCC----ccCCCCEEcCHHHH
Confidence 456777776 89999987764443
No 35
>TIGR00354 polC DNA polymerase, archaeal type II, large subunit. This model represents the large subunit, DP2, of a two subunit novel Archaeal replicative DNA polymerase first characterized for Pyrococcus furiosus. Structure of DP2 appears to be organized as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit.
Probab=79.19 E-value=1.1 Score=46.59 Aligned_cols=19 Identities=21% Similarity=0.508 Sum_probs=15.1
Q ss_pred Eeccccc-----ceeeCCCCcccc
Q psy1452 154 EMHGTAF-----RVMCLGCDYEID 172 (268)
Q Consensus 154 elHG~~~-----~~~C~~C~~~~~ 172 (268)
-|-||+. .++|++|+..|-
T Consensus 1000 Dl~GNLRaFsrQ~fRC~kC~~kYR 1023 (1095)
T TIGR00354 1000 DIIGNLRAFSRQEVRCTKCNTKYR 1023 (1095)
T ss_pred HhhhhHhhhhccceeecccCCccc
Confidence 5668886 568999999874
No 36
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=78.78 E-value=0.94 Score=36.07 Aligned_cols=10 Identities=20% Similarity=0.657 Sum_probs=8.7
Q ss_pred eeCCCCcccc
Q psy1452 163 MCLGCDYEID 172 (268)
Q Consensus 163 ~C~~C~~~~~ 172 (268)
+|++|++.+.
T Consensus 3 ~Ct~Cg~~f~ 12 (131)
T PF09845_consen 3 QCTKCGRVFE 12 (131)
T ss_pred ccCcCCCCcC
Confidence 7999999874
No 37
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=78.71 E-value=1.5 Score=26.80 Aligned_cols=12 Identities=17% Similarity=0.321 Sum_probs=9.4
Q ss_pred CCCCCCCCCeec
Q psy1452 212 VPQCPHCHGDLK 223 (268)
Q Consensus 212 iP~Cp~Cgg~lr 223 (268)
..+|++||..+.
T Consensus 25 ~v~C~~C~~~~~ 36 (38)
T TIGR02098 25 KVRCGKCGHVWY 36 (38)
T ss_pred EEECCCCCCEEE
Confidence 468999998754
No 38
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=77.95 E-value=0.97 Score=25.53 Aligned_cols=11 Identities=36% Similarity=0.978 Sum_probs=8.4
Q ss_pred CCCCCCCCCee
Q psy1452 212 VPQCPHCHGDL 222 (268)
Q Consensus 212 iP~Cp~Cgg~l 222 (268)
...||.||..|
T Consensus 16 ~~fC~~CG~~L 26 (26)
T PF13248_consen 16 AKFCPNCGAKL 26 (26)
T ss_pred cccChhhCCCC
Confidence 45799999764
No 39
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=77.63 E-value=2.5 Score=33.33 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=18.2
Q ss_pred HHHHHHhhhCCEEEEEcccccc
Q psy1452 239 EKIDHLVRSCDGVLVLGSSLTV 260 (268)
Q Consensus 239 ~~~~~~~~~~DlllviGTSl~V 260 (268)
..+.+.+++||++|++|+++.-
T Consensus 69 ~~~~~~l~~aDlvl~iG~~~~~ 90 (137)
T PF00205_consen 69 PAANEALEQADLVLAIGTRLSD 90 (137)
T ss_dssp HHHHHHHHHSSEEEEESSSSST
T ss_pred HHHHHHhcCCCEEEEECCCCcc
Confidence 3556788999999999999854
No 40
>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only]
Probab=76.75 E-value=0.65 Score=42.58 Aligned_cols=43 Identities=19% Similarity=0.349 Sum_probs=30.7
Q ss_pred EEecccccceeeCCCCcccchhhHHHHHHhhCCchhhhcccCCCCCCcccchhhhhcCCCCCCCCCCCeecccEE
Q psy1452 153 IEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDLKPDIV 227 (268)
Q Consensus 153 ~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~iP~Cp~Cgg~lrP~Vv 227 (268)
.---|.|+..-|+.|..++..++.. + .--+||+|||.++-.|.
T Consensus 238 dP~LGKY~~TAC~rC~t~y~le~A~---------------------------~-----~~wrCpkCGg~ikKGV~ 280 (403)
T COG1379 238 DPRLGKYHLTACSRCYTRYSLEEAK---------------------------S-----LRWRCPKCGGKIKKGVS 280 (403)
T ss_pred CccccchhHHHHHHhhhccCcchhh---------------------------h-----hcccCcccccchhhhHH
Confidence 3445888999999999888643321 0 13589999998887765
No 41
>PRK12496 hypothetical protein; Provisional
Probab=76.65 E-value=1.4 Score=36.54 Aligned_cols=12 Identities=33% Similarity=0.841 Sum_probs=9.4
Q ss_pred ceeeCCCCcccc
Q psy1452 161 RVMCLGCDYEID 172 (268)
Q Consensus 161 ~~~C~~C~~~~~ 172 (268)
..+|..|++.++
T Consensus 127 ~~~C~gC~~~~~ 138 (164)
T PRK12496 127 RKVCKGCKKKYP 138 (164)
T ss_pred eEECCCCCcccc
Confidence 357999998774
No 42
>PRK04023 DNA polymerase II large subunit; Validated
Probab=76.56 E-value=1.4 Score=46.00 Aligned_cols=38 Identities=24% Similarity=0.578 Sum_probs=28.1
Q ss_pred Eeccccc-----ceeeCCCCcccchhhHHHHHHhhCCchhhhcccCCCCCCcccchhhhhcCCCCCCCCCCCeecccE
Q psy1452 154 EMHGTAF-----RVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDLKPDI 226 (268)
Q Consensus 154 elHG~~~-----~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~iP~Cp~Cgg~lrP~V 226 (268)
-|-||+. .++|++|+..|-+- | -..+|++|||.+-+.|
T Consensus 1025 Dl~GNLRaFsrQ~fRC~kC~~kYRR~----------------------------P-------L~G~C~kCGg~lilTV 1067 (1121)
T PRK04023 1025 DLIGNLRAFSRQEFRCTKCGAKYRRP----------------------------P-------LSGKCPKCGGNLILTV 1067 (1121)
T ss_pred hhhhhhhhhcccceeecccCcccccC----------------------------C-------CCCcCccCCCeEEEEE
Confidence 5668886 46899999987421 1 1568999999887765
No 43
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=75.23 E-value=1.6 Score=46.71 Aligned_cols=19 Identities=21% Similarity=0.511 Sum_probs=15.2
Q ss_pred Eeccccc-----ceeeCCCCcccc
Q psy1452 154 EMHGTAF-----RVMCLGCDYEID 172 (268)
Q Consensus 154 elHG~~~-----~~~C~~C~~~~~ 172 (268)
-|-||+. .++|++|+..|-
T Consensus 1241 Dl~GNLraFsrQ~~RC~kC~~kyR 1264 (1337)
T PRK14714 1241 DLIGNLRAFSRQEFRCLKCGTKYR 1264 (1337)
T ss_pred hhhhhhhhhhccceeecccCcccc
Confidence 5668886 568999999874
No 44
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=74.76 E-value=1.5 Score=34.24 Aligned_cols=19 Identities=11% Similarity=0.427 Sum_probs=12.9
Q ss_pred EEecccccceeeCCCCccc
Q psy1452 153 IEMHGTAFRVMCLGCDYEI 171 (268)
Q Consensus 153 ~elHG~~~~~~C~~C~~~~ 171 (268)
+++.=--....|..|+..+
T Consensus 63 L~Ie~vp~~~~C~~Cg~~~ 81 (117)
T PRK00564 63 LDIVDEKVELECKDCSHVF 81 (117)
T ss_pred EEEEecCCEEEhhhCCCcc
Confidence 3444445567899999765
No 45
>PRK07591 threonine synthase; Validated
Probab=74.54 E-value=2 Score=41.09 Aligned_cols=13 Identities=23% Similarity=0.513 Sum_probs=10.5
Q ss_pred cceeeCCCCcccc
Q psy1452 160 FRVMCLGCDYEID 172 (268)
Q Consensus 160 ~~~~C~~C~~~~~ 172 (268)
..++|..|+++++
T Consensus 17 ~~l~C~~Cg~~~~ 29 (421)
T PRK07591 17 VALKCRECGAEYP 29 (421)
T ss_pred eEEEeCCCCCcCC
Confidence 3589999999874
No 46
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=74.14 E-value=2.7 Score=25.41 Aligned_cols=11 Identities=27% Similarity=0.528 Sum_probs=9.1
Q ss_pred ceeeCCCCccc
Q psy1452 161 RVMCLGCDYEI 171 (268)
Q Consensus 161 ~~~C~~C~~~~ 171 (268)
.++|..||..+
T Consensus 2 ~~~C~~CG~i~ 12 (34)
T cd00729 2 VWVCPVCGYIH 12 (34)
T ss_pred eEECCCCCCEe
Confidence 47899999876
No 47
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=73.90 E-value=1.3 Score=33.75 Aligned_cols=11 Identities=27% Similarity=0.573 Sum_probs=9.1
Q ss_pred eeeCCCCcccc
Q psy1452 162 VMCLGCDYEID 172 (268)
Q Consensus 162 ~~C~~C~~~~~ 172 (268)
-||++|++.++
T Consensus 3 H~CtrCG~vf~ 13 (112)
T COG3364 3 HQCTRCGEVFD 13 (112)
T ss_pred ceecccccccc
Confidence 38999999875
No 48
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=73.44 E-value=2.8 Score=25.62 Aligned_cols=14 Identities=14% Similarity=0.503 Sum_probs=10.6
Q ss_pred ceeeCCCCcccchh
Q psy1452 161 RVMCLGCDYEIDRH 174 (268)
Q Consensus 161 ~~~C~~C~~~~~~~ 174 (268)
...|.+|+..+..+
T Consensus 2 ~i~Cp~C~~~y~i~ 15 (36)
T PF13717_consen 2 IITCPNCQAKYEID 15 (36)
T ss_pred EEECCCCCCEEeCC
Confidence 36899999988543
No 49
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=71.87 E-value=2.3 Score=34.83 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=14.4
Q ss_pred EEEeccCcchhhhhcCCceEEecccccceeeCCCCcc
Q psy1452 134 YIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYE 170 (268)
Q Consensus 134 ~iiTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~ 170 (268)
+++|+++|.-.+.. .-.|++||.+
T Consensus 14 H~~t~~~~~~p~~~-------------~~fC~kCG~~ 37 (158)
T PF10083_consen 14 HVITDSYDKNPELR-------------EKFCSKCGAK 37 (158)
T ss_pred cccccccccCchHH-------------HHHHHHhhHH
Confidence 56777776543332 3468888864
No 50
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=71.24 E-value=2.9 Score=33.18 Aligned_cols=14 Identities=14% Similarity=0.297 Sum_probs=10.5
Q ss_pred CCCCCCCCCeeccc
Q psy1452 212 VPQCPHCHGDLKPD 225 (268)
Q Consensus 212 iP~Cp~Cgg~lrP~ 225 (268)
...||+||....|.
T Consensus 26 p~vcP~cg~~~~~~ 39 (129)
T TIGR02300 26 PAVSPYTGEQFPPE 39 (129)
T ss_pred CccCCCcCCccCcc
Confidence 56899999776554
No 51
>PF14353 CpXC: CpXC protein
Probab=71.08 E-value=1.2 Score=35.03 Aligned_cols=11 Identities=27% Similarity=0.818 Sum_probs=9.1
Q ss_pred eeeCCCCcccc
Q psy1452 162 VMCLGCDYEID 172 (268)
Q Consensus 162 ~~C~~C~~~~~ 172 (268)
..|++|++...
T Consensus 2 itCP~C~~~~~ 12 (128)
T PF14353_consen 2 ITCPHCGHEFE 12 (128)
T ss_pred cCCCCCCCeeE
Confidence 57999998764
No 52
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=70.77 E-value=3.4 Score=24.64 Aligned_cols=11 Identities=36% Similarity=0.821 Sum_probs=8.9
Q ss_pred eeeCCCCcccc
Q psy1452 162 VMCLGCDYEID 172 (268)
Q Consensus 162 ~~C~~C~~~~~ 172 (268)
++|..|+..+.
T Consensus 2 ~~C~~CGy~y~ 12 (33)
T cd00350 2 YVCPVCGYIYD 12 (33)
T ss_pred EECCCCCCEEC
Confidence 68999998763
No 53
>PF07799 DUF1643: Protein of unknown function (DUF1643); InterPro: IPR012441 This entry is represented by Bacteriophage D3, Orf41.6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The members of this family are all sequences found within hypothetical proteins expressed by various bacteria, archaea and phage. The region concerned is approximately 150 residues long.
Probab=70.44 E-value=6.3 Score=31.27 Aligned_cols=59 Identities=8% Similarity=0.192 Sum_probs=45.3
Q ss_pred chhhhhhhhhccc--------ccCCCCCCCcccccCCCCCCCHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy1452 2 TTCRIQRLFFKHF--------IVPPDVTSRSISFIPKHKPVEESDINKLKQFIEKYNKILVVTGAGIS 61 (268)
Q Consensus 2 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~a~~ivi~tGAGiS 61 (268)
|+.|++++. +.+ ++.|.+.+.+-.+...+.++..++.+.+.+.+++++.||+.=|+-..
T Consensus 33 T~~~~~~~a-~~~gyg~~~i~NLf~~~~t~p~~l~~~~~~~~~~N~~~i~~~~~~~~~vv~AWG~~~~ 99 (136)
T PF07799_consen 33 TIRRCINFA-RRWGYGGVIIVNLFPQRSTDPKDLKKAPDPIGPENDEHIREALKEADDVVLAWGNHGK 99 (136)
T ss_pred HHHHHHHHH-hhcCCCeEEEEEecccccCCHHHHHhccCcccHhHHHHHHHHHhccCcEEEEeCCCcc
Confidence 667777777 443 77887776555555566677788999999999999999999988544
No 54
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=70.42 E-value=2 Score=23.57 Aligned_cols=11 Identities=36% Similarity=1.259 Sum_probs=5.0
Q ss_pred CCCCCCeeccc
Q psy1452 215 CPHCHGDLKPD 225 (268)
Q Consensus 215 Cp~Cgg~lrP~ 225 (268)
||+||..+.++
T Consensus 2 Cp~CG~~~~~~ 12 (23)
T PF13240_consen 2 CPNCGAEIEDD 12 (23)
T ss_pred CcccCCCCCCc
Confidence 44444444433
No 55
>PRK14873 primosome assembly protein PriA; Provisional
Probab=70.22 E-value=10 Score=38.52 Aligned_cols=45 Identities=9% Similarity=0.096 Sum_probs=24.4
Q ss_pred HHHHHHHHhHhcCCCcEEEeccCcchhhhhcCCceEEecccccceeeCCCCcc
Q psy1452 118 ANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYE 170 (268)
Q Consensus 118 ~~H~~L~~L~~~~~~~~iiTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~ 170 (268)
.....|.+-.++| ..++--|-. |...++.++-.=...+|..|+-.
T Consensus 357 ~l~~~i~~~L~~g--qvll~lnRr------Gyap~l~C~~Cg~~~~C~~C~~~ 401 (665)
T PRK14873 357 LAFRAARDALEHG--PVLVQVPRR------GYVPSLACARCRTPARCRHCTGP 401 (665)
T ss_pred HHHHHHHHHHhcC--cEEEEecCC------CCCCeeEhhhCcCeeECCCCCCc
Confidence 3444444444545 556655654 44455566666666666666643
No 56
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=69.57 E-value=3 Score=39.63 Aligned_cols=13 Identities=23% Similarity=0.767 Sum_probs=10.3
Q ss_pred cceeeCCCCcccc
Q psy1452 160 FRVMCLGCDYEID 172 (268)
Q Consensus 160 ~~~~C~~C~~~~~ 172 (268)
+.++|..|+++++
T Consensus 1 ~~l~C~~Cg~~~~ 13 (398)
T TIGR03844 1 YTLRCPGCGEVLP 13 (398)
T ss_pred CEEEeCCCCCccC
Confidence 3579999999873
No 57
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=69.12 E-value=3 Score=36.77 Aligned_cols=22 Identities=23% Similarity=0.670 Sum_probs=15.8
Q ss_pred CceEEecccccceeeCCCCcccchhh
Q psy1452 150 KKVIEMHGTAFRVMCLGCDYEIDRHK 175 (268)
Q Consensus 150 ~~v~elHG~~~~~~C~~C~~~~~~~~ 175 (268)
-.|+.+.|. .|..|+-..+...
T Consensus 190 ~gvvpl~g~----~C~GC~m~l~~~~ 211 (239)
T COG1579 190 VGVVPLEGR----VCGGCHMKLPSQT 211 (239)
T ss_pred ceEEeecCC----cccCCeeeecHHH
Confidence 357777775 5999998776443
No 58
>COG2331 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.62 E-value=1.9 Score=31.03 Aligned_cols=20 Identities=40% Similarity=0.788 Sum_probs=13.9
Q ss_pred CCCCCCCCCeec-----ccEEEeCC
Q psy1452 212 VPQCPHCHGDLK-----PDIVFFGD 231 (268)
Q Consensus 212 iP~Cp~Cgg~lr-----P~Vv~fgE 231 (268)
.-.||.||+.|| +.|+|=|.
T Consensus 33 lt~ce~c~a~~kk~l~~vgi~fKGS 57 (82)
T COG2331 33 LTTCEECGARLKKLLNAVGIVFKGS 57 (82)
T ss_pred cccChhhChHHHHhhccceEEEecc
Confidence 557999998765 56665443
No 59
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=68.50 E-value=3.9 Score=26.23 Aligned_cols=10 Identities=30% Similarity=0.664 Sum_probs=8.3
Q ss_pred CCCCCCCCCe
Q psy1452 212 VPQCPHCHGD 221 (268)
Q Consensus 212 iP~Cp~Cgg~ 221 (268)
.-+||.||..
T Consensus 19 ~irC~~CG~r 28 (44)
T smart00659 19 VVRCRECGYR 28 (44)
T ss_pred ceECCCCCce
Confidence 4689999975
No 60
>PRK06450 threonine synthase; Validated
Probab=68.30 E-value=3.4 Score=38.27 Aligned_cols=10 Identities=30% Similarity=0.786 Sum_probs=8.8
Q ss_pred eeeCCCCccc
Q psy1452 162 VMCLGCDYEI 171 (268)
Q Consensus 162 ~~C~~C~~~~ 171 (268)
++|..|++.+
T Consensus 4 ~~C~~Cg~~~ 13 (338)
T PRK06450 4 EVCMKCGKER 13 (338)
T ss_pred eEECCcCCcC
Confidence 7899999876
No 61
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=68.26 E-value=4.6 Score=31.77 Aligned_cols=25 Identities=12% Similarity=0.393 Sum_probs=20.6
Q ss_pred HHHHHHHHHhCCcEEEEeCcccccc
Q psy1452 39 INKLKQFIEKYNKILVVTGAGISTE 63 (268)
Q Consensus 39 l~~l~~~l~~a~~ivi~tGAGiS~~ 63 (268)
+++++++|++|++.++++|.|+..+
T Consensus 1 i~~~~~~L~~A~rP~il~G~g~~~~ 25 (137)
T PF00205_consen 1 IDEAADLLSSAKRPVILAGRGARRS 25 (137)
T ss_dssp HHHHHHHHHH-SSEEEEE-HHHHHT
T ss_pred CHHHHHHHHhCCCEEEEEcCCcChh
Confidence 5789999999999999999998844
No 62
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=67.33 E-value=4.5 Score=24.78 Aligned_cols=11 Identities=18% Similarity=0.467 Sum_probs=9.1
Q ss_pred eeeCCCCcccc
Q psy1452 162 VMCLGCDYEID 172 (268)
Q Consensus 162 ~~C~~C~~~~~ 172 (268)
..|.+|+..|.
T Consensus 2 r~C~~Cg~~Yh 12 (36)
T PF05191_consen 2 RICPKCGRIYH 12 (36)
T ss_dssp EEETTTTEEEE
T ss_pred cCcCCCCCccc
Confidence 57999999874
No 63
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=67.05 E-value=5.2 Score=38.47 Aligned_cols=43 Identities=23% Similarity=0.392 Sum_probs=35.7
Q ss_pred cccEEEeCCCCChH---HHHHHHHHhhhCCEEEEEccccccccccc
Q psy1452 223 KPDIVFFGDNIPRH---RMEKIDHLVRSCDGVLVLGSSLTVSFSKS 265 (268)
Q Consensus 223 rP~Vv~fgE~~~~~---~~~~~~~~~~~~DlllviGTSl~V~p~~~ 265 (268)
..||++=.-.+|.+ .++++...+.++|+.||||..-.|.|+++
T Consensus 354 HMNVLLAEA~VPYd~v~eMdeIN~~F~~tDvalVIGANDvVNPaA~ 399 (462)
T PRK09444 354 HMNVLLAEAKVPYDIVLEMDEINDDFADTDTVLVIGANDTVNPAAQ 399 (462)
T ss_pred cceeEEeecCCCHHHHHhHHhhccccccCCEEEEecCccCCCcccc
Confidence 45888877778866 55667778889999999999999999985
No 64
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=66.68 E-value=3.6 Score=27.13 Aligned_cols=11 Identities=27% Similarity=0.718 Sum_probs=8.9
Q ss_pred ceeeCCCCccc
Q psy1452 161 RVMCLGCDYEI 171 (268)
Q Consensus 161 ~~~C~~C~~~~ 171 (268)
...|..|+++.
T Consensus 6 ~Y~C~~Cg~~~ 16 (49)
T COG1996 6 EYKCARCGREV 16 (49)
T ss_pred EEEhhhcCCee
Confidence 45799999876
No 65
>PRK14715 DNA polymerase II large subunit; Provisional
Probab=66.47 E-value=3.2 Score=44.67 Aligned_cols=15 Identities=27% Similarity=0.702 Sum_probs=11.9
Q ss_pred CCCCCCCCCeecccE
Q psy1452 212 VPQCPHCHGDLKPDI 226 (268)
Q Consensus 212 iP~Cp~Cgg~lrP~V 226 (268)
..+||+|||.+-+.|
T Consensus 1557 ~G~C~kCGg~~ilTV 1571 (1627)
T PRK14715 1557 KGKCPKCGSKLILTV 1571 (1627)
T ss_pred CCcCcccCCeEEEEE
Confidence 468999999876655
No 66
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=66.24 E-value=4.3 Score=27.81 Aligned_cols=19 Identities=21% Similarity=0.635 Sum_probs=15.9
Q ss_pred CCCCCCCCCCeecccEEEe
Q psy1452 211 HVPQCPHCHGDLKPDIVFF 229 (268)
Q Consensus 211 ~iP~Cp~Cgg~lrP~Vv~f 229 (268)
..|.||-|++.|+..+.+.
T Consensus 38 ~~p~CPlC~s~M~~~~r~L 56 (59)
T PF14169_consen 38 EEPVCPLCKSPMVSGTRML 56 (59)
T ss_pred CCccCCCcCCccccceeec
Confidence 4799999999999887653
No 67
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=65.28 E-value=15 Score=35.93 Aligned_cols=23 Identities=9% Similarity=0.206 Sum_probs=15.4
Q ss_pred HHHHHHHHhhhCCEEEEEccccc
Q psy1452 237 RMEKIDHLVRSCDGVLVLGSSLT 259 (268)
Q Consensus 237 ~~~~~~~~~~~~DlllviGTSl~ 259 (268)
.++.+.+.+.+-+.=|+|||.+.
T Consensus 300 ~~~~~l~~f~~g~~~ILVgT~~i 322 (505)
T TIGR00595 300 AHEALLNQFANGKADILIGTQMI 322 (505)
T ss_pred HHHHHHHHHhcCCCCEEEeCccc
Confidence 45666677766555666888864
No 68
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=65.23 E-value=3.4 Score=32.05 Aligned_cols=21 Identities=10% Similarity=0.328 Sum_probs=13.8
Q ss_pred eEEecccccceeeCCCCcccc
Q psy1452 152 VIEMHGTAFRVMCLGCDYEID 172 (268)
Q Consensus 152 v~elHG~~~~~~C~~C~~~~~ 172 (268)
-.+++=--...+|..|++.+.
T Consensus 61 ~L~I~~vp~~~~C~~Cg~~~~ 81 (113)
T PRK12380 61 DLHIVYKPAQAWCWDCSQVVE 81 (113)
T ss_pred EEEEEeeCcEEEcccCCCEEe
Confidence 334444455678999997663
No 69
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=64.67 E-value=3.6 Score=32.03 Aligned_cols=19 Identities=16% Similarity=0.490 Sum_probs=12.3
Q ss_pred EecccccceeeCCCCcccc
Q psy1452 154 EMHGTAFRVMCLGCDYEID 172 (268)
Q Consensus 154 elHG~~~~~~C~~C~~~~~ 172 (268)
+++=--...+|..|++.+.
T Consensus 63 ~I~~~p~~~~C~~Cg~~~~ 81 (115)
T TIGR00100 63 NIEDEPVECECEDCSEEVS 81 (115)
T ss_pred EEEeeCcEEEcccCCCEEe
Confidence 3333344578999997663
No 70
>PRK05580 primosome assembly protein PriA; Validated
Probab=63.35 E-value=15 Score=37.31 Aligned_cols=23 Identities=9% Similarity=0.270 Sum_probs=14.9
Q ss_pred HHHHHHHHhhhCCEEEEEccccc
Q psy1452 237 RMEKIDHLVRSCDGVLVLGSSLT 259 (268)
Q Consensus 237 ~~~~~~~~~~~~DlllviGTSl~ 259 (268)
..+.+.+.+.+-+.=|+|||.+.
T Consensus 468 ~~~~~l~~f~~g~~~ILVgT~~i 490 (679)
T PRK05580 468 ALEQLLAQFARGEADILIGTQML 490 (679)
T ss_pred hHHHHHHHHhcCCCCEEEEChhh
Confidence 45666667765555566888764
No 71
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=62.98 E-value=9.1 Score=37.95 Aligned_cols=28 Identities=14% Similarity=0.433 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhCCcEEEEeCccccccc
Q psy1452 37 SDINKLKQFIEKYNKILVVTGAGISTES 64 (268)
Q Consensus 37 ~~l~~l~~~l~~a~~ivi~tGAGiS~~s 64 (268)
.+|++++++|.+|++.||++|.|+..+.
T Consensus 188 ~~i~~aa~~L~~AkrPvIl~G~G~~~a~ 215 (550)
T COG0028 188 EAIRKAAELLAEAKRPVILAGGGVRRAG 215 (550)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCccccc
Confidence 8899999999999999999999988665
No 72
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=62.93 E-value=4.3 Score=32.54 Aligned_cols=15 Identities=20% Similarity=0.359 Sum_probs=11.5
Q ss_pred ccceeeCCCCcccch
Q psy1452 159 AFRVMCLGCDYEIDR 173 (268)
Q Consensus 159 ~~~~~C~~C~~~~~~ 173 (268)
-..+.|..|+..+..
T Consensus 68 p~~~~C~~CG~~~~~ 82 (135)
T PRK03824 68 EAVLKCRNCGNEWSL 82 (135)
T ss_pred ceEEECCCCCCEEec
Confidence 356899999987653
No 73
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=62.80 E-value=5 Score=24.59 Aligned_cols=12 Identities=17% Similarity=0.592 Sum_probs=9.6
Q ss_pred ceeeCCCCcccc
Q psy1452 161 RVMCLGCDYEID 172 (268)
Q Consensus 161 ~~~C~~C~~~~~ 172 (268)
..+|++|+..+.
T Consensus 2 ~i~CP~C~~~f~ 13 (37)
T PF13719_consen 2 IITCPNCQTRFR 13 (37)
T ss_pred EEECCCCCceEE
Confidence 358999999874
No 74
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=62.40 E-value=4.2 Score=31.64 Aligned_cols=19 Identities=11% Similarity=0.328 Sum_probs=12.4
Q ss_pred EecccccceeeCCCCcccc
Q psy1452 154 EMHGTAFRVMCLGCDYEID 172 (268)
Q Consensus 154 elHG~~~~~~C~~C~~~~~ 172 (268)
+++=--...+|..|++.+.
T Consensus 63 ~i~~~p~~~~C~~Cg~~~~ 81 (114)
T PRK03681 63 HLEEQEAECWCETCQQYVT 81 (114)
T ss_pred EEEeeCcEEEcccCCCeee
Confidence 3443445678999997653
No 75
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=62.15 E-value=14 Score=33.46 Aligned_cols=97 Identities=21% Similarity=0.341 Sum_probs=60.2
Q ss_pred ccccCCCCCCCcccccCCCCCCCHHHHHHHHHHHHhCCcEEEEeCcccccccCCCCccCCCCccccccCCCCCChHHHhh
Q psy1452 13 HFIVPPDVTSRSISFIPKHKPVEESDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLK 92 (268)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~a~~ivi~tGAGiS~~sGiP~fr~~~~g~~~~~~~~~~~~~~~~~ 92 (268)
...+..|+.--.=+.+|.|+|..--.++.++. |-++.++||.+|.| |||..+..+ + |...+ -.
T Consensus 148 gw~~keD~~rG~RRVVpSP~P~~IvE~~~Ik~-L~~~g~vVI~~GGG-----GIPVv~~~~-~-~~GVe--AV------- 210 (312)
T COG0549 148 GWVFKEDAGRGYRRVVPSPKPVRIVEAEAIKA-LLESGHVVIAAGGG-----GIPVVEEGA-G-LQGVE--AV------- 210 (312)
T ss_pred CcEEEecCCCCeeEecCCCCCccchhHHHHHH-HHhCCCEEEEeCCC-----CcceEecCC-C-cceee--EE-------
Confidence 44445555444455678887765444444444 44589999999998 999888776 4 22210 00
Q ss_pred ChHHHHHHHHHhhcCccccCCCCCCHHHHHHHHhHhcCCCcEEEeccCcchhhhhcC
Q psy1452 93 SRRVRIRYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGN 149 (268)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~P~~~H~~L~~L~~~~~~~~iiTqNiD~L~~~aG~ 149 (268)
+ + -..+-..|+++.+ -+.++|.|.+|+.+..-|.
T Consensus 211 ------------------I-D--KDlasalLA~~i~--AD~liILTdVd~Vy~n~gk 244 (312)
T COG0549 211 ------------------I-D--KDLASALLAEQID--ADLLIILTDVDAVYVNFGK 244 (312)
T ss_pred ------------------E-c--cHHHHHHHHHHhc--CCEEEEEeccchheecCCC
Confidence 0 0 0123345666654 4568999999999988874
No 76
>COG1439 Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module [General function prediction only]
Probab=61.76 E-value=5.1 Score=33.65 Aligned_cols=14 Identities=36% Similarity=0.679 Sum_probs=10.5
Q ss_pred CCCCCCCCCeeccc
Q psy1452 212 VPQCPHCHGDLKPD 225 (268)
Q Consensus 212 iP~Cp~Cgg~lrP~ 225 (268)
.-.||.||++++-.
T Consensus 153 ~~~Cp~CG~~~~~~ 166 (177)
T COG1439 153 KDFCPICGSPLKRK 166 (177)
T ss_pred CCcCCCCCCceEEe
Confidence 45799999986643
No 77
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=61.50 E-value=27 Score=35.93 Aligned_cols=25 Identities=4% Similarity=0.028 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhCCcEEEEeCccccc
Q psy1452 38 DINKLKQFIEKYNKILVVTGAGIST 62 (268)
Q Consensus 38 ~l~~l~~~l~~a~~ivi~tGAGiS~ 62 (268)
..+.-.+.....-.|||+|.+-+.+
T Consensus 285 r~~~W~~~~~G~~~vVIGtRSAlF~ 309 (730)
T COG1198 285 RYRVWRRARRGEARVVIGTRSALFL 309 (730)
T ss_pred HHHHHHHHhcCCceEEEEechhhcC
Confidence 3444444444555777777666654
No 78
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=60.43 E-value=7.3 Score=32.76 Aligned_cols=12 Identities=42% Similarity=0.883 Sum_probs=9.7
Q ss_pred CCCCCCCCCeec
Q psy1452 212 VPQCPHCHGDLK 223 (268)
Q Consensus 212 iP~Cp~Cgg~lr 223 (268)
.-.||.||+.|.
T Consensus 132 ~F~Cp~Cg~~L~ 143 (176)
T COG1675 132 GFTCPKCGEDLE 143 (176)
T ss_pred CCCCCCCCchhh
Confidence 368999998865
No 79
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=60.22 E-value=6.2 Score=22.35 Aligned_cols=10 Identities=50% Similarity=1.092 Sum_probs=7.5
Q ss_pred CCCCCCCCCe
Q psy1452 212 VPQCPHCHGD 221 (268)
Q Consensus 212 iP~Cp~Cgg~ 221 (268)
.-.||+||-.
T Consensus 14 ~~~Cp~CG~~ 23 (26)
T PF10571_consen 14 AKFCPHCGYD 23 (26)
T ss_pred cCcCCCCCCC
Confidence 4579999854
No 80
>PF12172 DUF35_N: Rubredoxin-like zinc ribbon domain (DUF35_N); InterPro: IPR022002 This domain has no known function and is found in conserved hypothetical archaeal and bacterial proteins. The domain is duplicated in O53566 from SWISSPROT. The structure of a DUF35 representative reveals two long N-terminal helices followed by a rubredoxin-like zinc ribbon domain represented in this family and a C-terminal OB fold domain. Zinc is chelated by the four conserved cysteines in the alignment. ; PDB: 3IRB_A.
Probab=59.31 E-value=4.1 Score=24.79 Aligned_cols=16 Identities=19% Similarity=0.393 Sum_probs=8.7
Q ss_pred cccccceeeCCCCccc
Q psy1452 156 HGTAFRVMCLGCDYEI 171 (268)
Q Consensus 156 HG~~~~~~C~~C~~~~ 171 (268)
.|.+...+|.+|+..+
T Consensus 6 ~~~l~~~rC~~Cg~~~ 21 (37)
T PF12172_consen 6 EGRLLGQRCRDCGRVQ 21 (37)
T ss_dssp TT-EEEEE-TTT--EE
T ss_pred CCEEEEEEcCCCCCEe
Confidence 3566677899999865
No 81
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=59.27 E-value=3.4 Score=32.06 Aligned_cols=21 Identities=24% Similarity=0.537 Sum_probs=13.5
Q ss_pred eEEecccccceeeCCCCcccc
Q psy1452 152 VIEMHGTAFRVMCLGCDYEID 172 (268)
Q Consensus 152 v~elHG~~~~~~C~~C~~~~~ 172 (268)
-++++=--...+|..|++.+.
T Consensus 61 ~L~Ie~~p~~~~C~~Cg~~~~ 81 (113)
T PF01155_consen 61 ELEIEEVPARARCRDCGHEFE 81 (113)
T ss_dssp EEEEEEE--EEEETTTS-EEE
T ss_pred EEEEEecCCcEECCCCCCEEe
Confidence 455555566789999999875
No 82
>COG1282 PntB NAD/NADP transhydrogenase beta subunit [Energy production and conversion]
Probab=58.06 E-value=7 Score=36.66 Aligned_cols=43 Identities=21% Similarity=0.356 Sum_probs=35.5
Q ss_pred cccEEEeCCCCChH---HHHHHHHHhhhCCEEEEEccccccccccc
Q psy1452 223 KPDIVFFGDNIPRH---RMEKIDHLVRSCDGVLVLGSSLTVSFSKS 265 (268)
Q Consensus 223 rP~Vv~fgE~~~~~---~~~~~~~~~~~~DlllviGTSl~V~p~~~ 265 (268)
..||++-.-.+|.+ .++.+.+.+.++|+++|||.--.|.|+++
T Consensus 356 HMNVLLAEA~VpYd~v~emddIN~dF~~tDVvlVIGANDvvNPAA~ 401 (463)
T COG1282 356 HMNVLLAEAKVPYDIVLEMDEINDDFADTDVVLVIGANDVVNPAAQ 401 (463)
T ss_pred chhhhhhhccCCHHHHhhHHhhcchhccccEEEEEccCCCCChhhc
Confidence 45888876677755 56778888899999999999999999875
No 83
>PRK05978 hypothetical protein; Provisional
Probab=57.98 E-value=4.8 Score=32.86 Aligned_cols=16 Identities=25% Similarity=0.584 Sum_probs=11.8
Q ss_pred CCCCCCCCCeecccEE
Q psy1452 212 VPQCPHCHGDLKPDIV 227 (268)
Q Consensus 212 iP~Cp~Cgg~lrP~Vv 227 (268)
.++|+.||-.+.+.--
T Consensus 52 ~~~C~~CG~~~~~~~a 67 (148)
T PRK05978 52 VDHCAACGEDFTHHRA 67 (148)
T ss_pred CCCccccCCccccCCc
Confidence 6799999977665433
No 84
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=57.29 E-value=6.6 Score=37.51 Aligned_cols=13 Identities=23% Similarity=0.590 Sum_probs=10.1
Q ss_pred cceeeCCCCcccc
Q psy1452 160 FRVMCLGCDYEID 172 (268)
Q Consensus 160 ~~~~C~~C~~~~~ 172 (268)
..+.|++|+...+
T Consensus 6 t~f~C~~CG~~s~ 18 (456)
T COG1066 6 TAFVCQECGYVSP 18 (456)
T ss_pred cEEEcccCCCCCc
Confidence 3578999998764
No 85
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=56.97 E-value=10 Score=40.06 Aligned_cols=37 Identities=24% Similarity=0.618 Sum_probs=25.2
Q ss_pred CCCCCCCCCeecccEEEeCCCCChHHHHHHHHHhhhCCEEEEEccc
Q psy1452 212 VPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSS 257 (268)
Q Consensus 212 iP~Cp~Cgg~lrP~Vv~fgE~~~~~~~~~~~~~~~~~DlllviGTS 257 (268)
.+.||.||+. ||. + ....++...+.+.++|.|+ |||=
T Consensus 708 ~~~cP~Cgs~---~v~---d--~~~~ve~lRelA~EvDeVl-IgTD 744 (1187)
T COG1110 708 EDKCPRCGSR---NVE---D--KTETVEALRELALEVDEIL-IGTD 744 (1187)
T ss_pred cccCCCCCCc---ccc---c--cHHHHHHHHHHHhhcCEEE-EcCC
Confidence 4589999974 221 1 2346788888889999876 4653
No 86
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=56.32 E-value=3.1 Score=35.97 Aligned_cols=14 Identities=21% Similarity=0.622 Sum_probs=10.6
Q ss_pred ceeeCCCCcccchh
Q psy1452 161 RVMCLGCDYEIDRH 174 (268)
Q Consensus 161 ~~~C~~C~~~~~~~ 174 (268)
...|+-|++.+...
T Consensus 5 ~~~CPvC~~~F~~~ 18 (214)
T PF09986_consen 5 KITCPVCGKEFKTK 18 (214)
T ss_pred ceECCCCCCeeeee
Confidence 46899999887543
No 87
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=56.07 E-value=13 Score=28.51 Aligned_cols=54 Identities=13% Similarity=0.102 Sum_probs=34.6
Q ss_pred CCCCCHHHHHHHHhHhcCCCcEEEeccCcchhhhhcCCceEEecccccceeeCCCCcccch
Q psy1452 113 SFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEIDR 173 (268)
Q Consensus 113 ~~~P~~~H~~L~~L~~~~~~~~iiTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~ 173 (268)
...++..|+.|..|.+.|.+..+-+.|--..++.+. +..-..+.|..|++....
T Consensus 39 ~is~~TVYR~L~~L~e~Gli~~~~~~~~~~~Y~~~~-------~~~h~h~iC~~Cg~v~~~ 92 (120)
T PF01475_consen 39 RISLATVYRTLDLLEEAGLIRKIEFGDGESRYELST-------CHHHHHFICTQCGKVIDL 92 (120)
T ss_dssp T--HHHHHHHHHHHHHTTSEEEEEETTSEEEEEESS-------SSSCEEEEETTTS-EEEE
T ss_pred CcCHHHHHHHHHHHHHCCeEEEEEcCCCcceEeecC-------CCcceEEEECCCCCEEEe
Confidence 334456899999999999887765543333333321 345567999999987654
No 88
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=55.96 E-value=10 Score=22.61 Aligned_cols=10 Identities=30% Similarity=0.833 Sum_probs=7.3
Q ss_pred CCCCCCCCCe
Q psy1452 212 VPQCPHCHGD 221 (268)
Q Consensus 212 iP~Cp~Cgg~ 221 (268)
.-+|+.||..
T Consensus 17 ~irC~~CG~R 26 (32)
T PF03604_consen 17 PIRCPECGHR 26 (32)
T ss_dssp TSSBSSSS-S
T ss_pred cEECCcCCCe
Confidence 4589999975
No 89
>TIGR00746 arcC carbamate kinase. The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.
Probab=55.79 E-value=17 Score=33.41 Aligned_cols=50 Identities=20% Similarity=0.418 Sum_probs=35.8
Q ss_pred CCCCCCcccccCCCCCCCHHHHHHHHHHHHhCCcEEEEeCcccccccCCCCccCCC
Q psy1452 18 PDVTSRSISFIPKHKPVEESDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEG 73 (268)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~a~~ivi~tGAGiS~~sGiP~fr~~~ 73 (268)
+|..--.=+.||.|.|..-...+.+..+|. .+.+||++|.| |+|.+.+.+
T Consensus 151 ~d~~~~~rrvv~sp~p~~iv~~~~I~~LL~-~G~iVI~~ggg-----giPvi~e~~ 200 (310)
T TIGR00746 151 EDAGRGWRRVVPSPRPKDIVEAETIKTLVE-NGVIVISSGGG-----GVPVVLEGA 200 (310)
T ss_pred ecCCCcceEeecCCCchhhccHHHHHHHHH-CCCEEEeCCCC-----CcCEEecCC
Confidence 333333334789999988888888888887 45788888766 899876543
No 90
>TIGR00375 conserved hypothetical protein TIGR00375. The member of this family from Methanococcus jannaschii, MJ0043, is considerably longer and appears to contain an intein N-terminal to the region of homology.
Probab=55.39 E-value=6.5 Score=37.03 Aligned_cols=19 Identities=16% Similarity=0.343 Sum_probs=14.3
Q ss_pred EecccccceeeCCCCcccc
Q psy1452 154 EMHGTAFRVMCLGCDYEID 172 (268)
Q Consensus 154 elHG~~~~~~C~~C~~~~~ 172 (268)
---|.|+.--|.+|+....
T Consensus 233 P~~GKYh~~~c~~C~~~~~ 251 (374)
T TIGR00375 233 PLLGKYHQTACEACGEPAV 251 (374)
T ss_pred cCCCccchhhhcccCCcCC
Confidence 3457888889999987653
No 91
>KOG4166|consensus
Probab=54.55 E-value=12 Score=36.04 Aligned_cols=41 Identities=24% Similarity=0.310 Sum_probs=31.2
Q ss_pred ccccCCCCCC-CHHHHHHHHHHHHhCCcEEEEeCcccccccC
Q psy1452 25 ISFIPKHKPV-EESDINKLKQFIEKYNKILVVTGAGISTESG 65 (268)
Q Consensus 25 ~~~~~~~~~~-~~~~l~~l~~~l~~a~~ivi~tGAGiS~~sG 65 (268)
|+-.|++.+. -+..|++++++|+.||+-|++.|+|+=..+-
T Consensus 273 m~~~~~~~~~~v~~~i~~~a~Li~laKKPVlyvG~G~Ln~~d 314 (675)
T KOG4166|consen 273 MSRMPKPPEDFVMSHIEQIARLISLAKKPVLYVGGGCLNSSD 314 (675)
T ss_pred HhhCCCCchhhHHHHHHHHHHHHHhccCceEEeCcccccCCc
Confidence 3344444332 2578999999999999999999999876654
No 92
>PRK08197 threonine synthase; Validated
Probab=54.53 E-value=7.1 Score=36.86 Aligned_cols=13 Identities=23% Similarity=0.480 Sum_probs=10.5
Q ss_pred cceeeCCCCcccc
Q psy1452 160 FRVMCLGCDYEID 172 (268)
Q Consensus 160 ~~~~C~~C~~~~~ 172 (268)
..++|..|++++.
T Consensus 6 ~~~~C~~Cg~~~~ 18 (394)
T PRK08197 6 SHLECSKCGETYD 18 (394)
T ss_pred eEEEECCCCCCCC
Confidence 3589999999874
No 93
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=53.59 E-value=15 Score=24.29 Aligned_cols=11 Identities=36% Similarity=0.679 Sum_probs=9.2
Q ss_pred eeeCCCCcccc
Q psy1452 162 VMCLGCDYEID 172 (268)
Q Consensus 162 ~~C~~C~~~~~ 172 (268)
.+|..|+..|+
T Consensus 2 y~C~~CgyiYd 12 (50)
T cd00730 2 YECRICGYIYD 12 (50)
T ss_pred cCCCCCCeEEC
Confidence 68999998875
No 94
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=53.39 E-value=6.7 Score=29.36 Aligned_cols=16 Identities=38% Similarity=0.571 Sum_probs=13.3
Q ss_pred hCCcEEEEeCcccccc
Q psy1452 48 KYNKILVVTGAGISTE 63 (268)
Q Consensus 48 ~a~~ivi~tGAGiS~~ 63 (268)
+.++|++++|+|+|++
T Consensus 2 ~~~~ILl~C~~G~sSS 17 (95)
T TIGR00853 2 NETNILLLCAAGMSTS 17 (95)
T ss_pred CccEEEEECCCchhHH
Confidence 3578999999999954
No 95
>COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]
Probab=52.14 E-value=9.5 Score=30.75 Aligned_cols=15 Identities=20% Similarity=0.459 Sum_probs=12.7
Q ss_pred ccccceeeCCCCccc
Q psy1452 157 GTAFRVMCLGCDYEI 171 (268)
Q Consensus 157 G~~~~~~C~~C~~~~ 171 (268)
|.+.-.+|.+|++.+
T Consensus 25 ~kl~g~kC~~CG~v~ 39 (140)
T COG1545 25 GKLLGTKCKKCGRVY 39 (140)
T ss_pred CcEEEEEcCCCCeEE
Confidence 677778999999876
No 96
>PRK12352 putative carbamate kinase; Reviewed
Probab=51.40 E-value=18 Score=33.36 Aligned_cols=52 Identities=19% Similarity=0.349 Sum_probs=36.7
Q ss_pred cCCCCCCCcccccCCCCCCCHHHHHHHHHHHHhCCcEEEEeCcccccccCCCCccCCC
Q psy1452 16 VPPDVTSRSISFIPKHKPVEESDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEG 73 (268)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~a~~ivi~tGAGiS~~sGiP~fr~~~ 73 (268)
..+|.-.-..+.+|.|.|+..-+.+.+..+|. ++.|||.+|.| |||-..+..
T Consensus 153 ~~~d~g~G~rrvv~sp~pv~~V~~~~I~~ll~-~g~iVi~~ggg-----giPv~~~~~ 204 (316)
T PRK12352 153 FVEDAGRGYRRVVASPEPKRIVEAPAIKALIQ-QGFVVIGAGGG-----GIPVVRTDA 204 (316)
T ss_pred EeecCCCCeEEecCCCCCceEEcHHHHHHHHH-CCCEEEecCCC-----CCCEEeCCC
Confidence 33343344566889999988777777777776 78888888777 788655543
No 97
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=51.21 E-value=19 Score=35.36 Aligned_cols=29 Identities=14% Similarity=0.260 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEeCccccc
Q psy1452 34 VEESDINKLKQFIEKYNKILVVTGAGIST 62 (268)
Q Consensus 34 ~~~~~l~~l~~~l~~a~~ivi~tGAGiS~ 62 (268)
.....+++++++|++|++.+|++|.|+..
T Consensus 180 ~~~~~i~~~~~~l~~A~rPvi~~G~g~~~ 208 (539)
T TIGR02418 180 APDDAIDEVAEAIQNAKLPVLLLGLRASS 208 (539)
T ss_pred CCHHHHHHHHHHHHcCCCCEEEECCCcCc
Confidence 34568999999999999999999999853
No 98
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=50.97 E-value=8.5 Score=35.28 Aligned_cols=16 Identities=31% Similarity=0.532 Sum_probs=11.3
Q ss_pred CCCCCCCCCe--ecccEE
Q psy1452 212 VPQCPHCHGD--LKPDIV 227 (268)
Q Consensus 212 iP~Cp~Cgg~--lrP~Vv 227 (268)
.+.||+||+. ++|-.-
T Consensus 368 ~~~c~~c~~~~~~~~~~~ 385 (389)
T PRK11788 368 YWHCPSCKAWETIKPIRG 385 (389)
T ss_pred eeECcCCCCccCcCCccc
Confidence 7899999964 555433
No 99
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=50.19 E-value=7.7 Score=29.66 Aligned_cols=14 Identities=36% Similarity=0.686 Sum_probs=12.0
Q ss_pred CcEEEEeCcccccc
Q psy1452 50 NKILVVTGAGISTE 63 (268)
Q Consensus 50 ~~ivi~tGAGiS~~ 63 (268)
++|++++|+|+|++
T Consensus 2 kkILlvCg~G~STS 15 (104)
T PRK09590 2 KKALIICAAGMSSS 15 (104)
T ss_pred cEEEEECCCchHHH
Confidence 47999999999865
No 100
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=49.81 E-value=22 Score=31.25 Aligned_cols=32 Identities=31% Similarity=0.609 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHHHHHHhC-CcEEEEeCcccccc
Q psy1452 32 KPVEESDINKLKQFIEKY-NKILVVTGAGISTE 63 (268)
Q Consensus 32 ~~~~~~~l~~l~~~l~~a-~~ivi~tGAGiS~~ 63 (268)
+......+..+++++..| ++|+|..|||+...
T Consensus 151 ~~sa~eg~~~l~~li~~a~gri~Im~GaGV~~~ 183 (241)
T COG3142 151 KASALEGLDLLKRLIEQAKGRIIIMAGAGVRAE 183 (241)
T ss_pred cCchhhhHHHHHHHHHHhcCCEEEEeCCCCCHH
Confidence 344556789999999987 79999999999865
No 101
>PF01396 zf-C4_Topoisom: Topoisomerase DNA binding C4 zinc finger; InterPro: IPR013498 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. This entry represents the zinc-finger domain found in type IA topoisomerases, including bacterial and archaeal topoisomerase I and III enzymes, and in eukaryotic topoisomerase III enzymes. Escherichia coli topoisomerase I proteins contain five copies of a zinc-ribbon-like domain at their C terminus, two of which have lost their cysteine residues and are therefore probably not able to bind zinc []. This domain is still considered to be a member of the zinc-ribbon superfamily despite not being able to bind zinc. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0005694 chromosome
Probab=49.40 E-value=9.2 Score=23.75 Aligned_cols=17 Identities=35% Similarity=0.612 Sum_probs=11.5
Q ss_pred CCCCCCCeecccEEEeC
Q psy1452 214 QCPHCHGDLKPDIVFFG 230 (268)
Q Consensus 214 ~Cp~Cgg~lrP~Vv~fg 230 (268)
.||.||+.|.--.--+|
T Consensus 3 ~CP~Cg~~lv~r~~k~g 19 (39)
T PF01396_consen 3 KCPKCGGPLVLRRGKKG 19 (39)
T ss_pred CCCCCCceeEEEECCCC
Confidence 69999988764433333
No 102
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed
Probab=49.39 E-value=23 Score=32.58 Aligned_cols=52 Identities=27% Similarity=0.496 Sum_probs=37.2
Q ss_pred cccCCCCCCCcccccCCCCCCCHHHHHHHHHHHHhCCcEEEEeCcccccccCCCCccC
Q psy1452 14 FIVPPDVTSRSISFIPKHKPVEESDINKLKQFIEKYNKILVVTGAGISTESGIPDYRS 71 (268)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~a~~ivi~tGAGiS~~sGiP~fr~ 71 (268)
..+.+|+---.=+.||.|+|..--+++.++.+|. .+.|+|++|-| |||-|..
T Consensus 150 ~~~~~d~g~g~RrvV~SP~P~~ive~~aI~~LLe-~G~IvI~~GgG-----GiPV~~~ 201 (313)
T PRK12454 150 WIVKEDAGRGWRRVVPSPDPLGIVEIEVIKALVE-NGFIVIASGGG-----GIPVIEE 201 (313)
T ss_pred CEEEEcCCCceEEEeCCCCCccccCHHHHHHHHH-CCCEEEEeCCC-----ccceEcC
Confidence 3445555544445889999988777888777777 68888888876 7776543
No 103
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=48.88 E-value=29 Score=33.06 Aligned_cols=39 Identities=13% Similarity=0.229 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEeCccccc-----------ccCCCCccCC
Q psy1452 34 VEESDINKLKQFIEKYNKILVVTGAGIST-----------ESGIPDYRSE 72 (268)
Q Consensus 34 ~~~~~l~~l~~~l~~a~~ivi~tGAGiS~-----------~sGiP~fr~~ 72 (268)
.....++++++.|++|++.+|++|.|+.. ..|+|.+...
T Consensus 196 ~~~~~i~~~~~~l~~AkrPvi~~G~g~~~~a~~~l~~lae~~~~PV~tt~ 245 (432)
T TIGR00173 196 LDPESLDELWDRLNQAKRGVIVAGPLPPAEDAEALAALAEALGWPLLADP 245 (432)
T ss_pred CChhhHHHHHHHHhhcCCcEEEEcCCCcHHHHHHHHHHHHhCCCeEEEeC
Confidence 34567999999999999999999999753 2467776543
No 104
>COG1499 NMD3 NMD protein affecting ribosome stability and mRNA decay [Translation, ribosomal structure and biogenesis]
Probab=48.35 E-value=15 Score=34.31 Aligned_cols=68 Identities=19% Similarity=0.472 Sum_probs=35.9
Q ss_pred ccceeeCCCCcccchhhHHHHHHhhCCchhhhcccCCCCCCcccchhhhhcCCCCCCCCCCCeecccEEEeCCCCChHHH
Q psy1452 159 AFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRM 238 (268)
Q Consensus 159 ~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~iP~Cp~Cgg~lrP~Vv~fgE~~~~~~~ 238 (268)
.....|..||...+ ..++.+++.++... .....+|. ..++-.|++|| .+++.-.|..+..-...+
T Consensus 4 ~~~~~C~~CGr~~~-----~~~~~lC~dC~~~~-----~~~~~ip~----~~~v~~C~~Cg-a~~~~~~W~~~~~~~~~l 68 (355)
T COG1499 4 ASTILCVRCGRSVD-----PLIDGLCGDCYVET-----TPLIEIPD----EVNVEVCRHCG-AYRIRGRWVDEEGANRLL 68 (355)
T ss_pred CcccEeccCCCcCc-----hhhccccHHHHhcc-----CccccCCC----ceEEEECCcCC-CccCCCcceeccccchHH
Confidence 34567999998764 22334444443221 11122222 22467899999 666666666643333334
Q ss_pred HHH
Q psy1452 239 EKI 241 (268)
Q Consensus 239 ~~~ 241 (268)
+..
T Consensus 69 ~~~ 71 (355)
T COG1499 69 EAL 71 (355)
T ss_pred HHH
Confidence 443
No 105
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=48.25 E-value=7.9 Score=36.40 Aligned_cols=10 Identities=30% Similarity=0.840 Sum_probs=7.2
Q ss_pred eeCCCCcccc
Q psy1452 163 MCLGCDYEID 172 (268)
Q Consensus 163 ~C~~C~~~~~ 172 (268)
+|.+|+....
T Consensus 2 ~c~~cg~~~~ 11 (372)
T cd01121 2 VCSECGYVSP 11 (372)
T ss_pred CCCCCCCCCC
Confidence 6888887653
No 106
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=48.10 E-value=26 Score=26.56 Aligned_cols=52 Identities=17% Similarity=0.208 Sum_probs=35.4
Q ss_pred CCCCCHHHHHHHHhHhcCCCcEEEeccCcchhhhhcCCceEEec--ccccceeeCCCCcccch
Q psy1452 113 SFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMH--GTAFRVMCLGCDYEIDR 173 (268)
Q Consensus 113 ~~~P~~~H~~L~~L~~~~~~~~iiTqNiD~L~~~aG~~~v~elH--G~~~~~~C~~C~~~~~~ 173 (268)
...++..|+.|..|++.|.+..+-..|-- ..|++. ..-..+.|.+|++....
T Consensus 32 ~i~~~TVYR~L~~L~~~Gli~~~~~~~~~---------~~y~~~~~~~h~H~~C~~Cg~i~~~ 85 (116)
T cd07153 32 SISLATVYRTLELLEEAGLVREIELGDGK---------ARYELNTDEHHHHLICTKCGKVIDF 85 (116)
T ss_pred CCCHHHHHHHHHHHHhCCCEEEEEeCCCc---------eEEEeCCCCCCCceEeCCCCCEEEe
Confidence 45667789999999999988776554421 233321 23347999999987653
No 107
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=48.05 E-value=19 Score=30.20 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhCCcEEEEeCccccc
Q psy1452 38 DINKLKQFIEKYNKILVVTGAGIST 62 (268)
Q Consensus 38 ~l~~l~~~l~~a~~ivi~tGAGiS~ 62 (268)
.=+.++++|++|++.+++.|.|+..
T Consensus 23 ~p~~aa~lI~~AKrPlIivG~ga~~ 47 (171)
T PRK00945 23 SPKIAAMMIKKAKRPLLVVGSLLLD 47 (171)
T ss_pred CHHHHHHHHHhCCCcEEEECcCccc
Confidence 4478899999999999999999975
No 108
>PF04606 Ogr_Delta: Ogr/Delta-like zinc finger; InterPro: IPR007684 This entry is represented by Bacteriophage P2, Ogr. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a viral family of phage zinc-binding transcriptional activators, which also contains cryptic members in some bacterial genomes []. The P4 phage delta protein contains two such domains attached covalently, while the P2 phage Ogr proteins possess one domain but function as dimers. All the members of this family have the following consensus sequence: C-X(2)-C-X(3)-A-(X)2-R-X(15)-C-X(4)-C-X(3)-F [].; GO: 0006355 regulation of transcription, DNA-dependent
Probab=47.99 E-value=9.7 Score=24.59 Aligned_cols=10 Identities=40% Similarity=1.301 Sum_probs=8.3
Q ss_pred CCCCCCCeec
Q psy1452 214 QCPHCHGDLK 223 (268)
Q Consensus 214 ~Cp~Cgg~lr 223 (268)
+||.||+.++
T Consensus 1 ~CP~Cg~~a~ 10 (47)
T PF04606_consen 1 RCPHCGSKAR 10 (47)
T ss_pred CcCCCCCeeE
Confidence 5999998775
No 109
>COG2051 RPS27A Ribosomal protein S27E [Translation, ribosomal structure and biogenesis]
Probab=47.90 E-value=6.9 Score=27.40 Aligned_cols=18 Identities=33% Similarity=0.549 Sum_probs=15.9
Q ss_pred EecccccceeeCCCCccc
Q psy1452 154 EMHGTAFRVMCLGCDYEI 171 (268)
Q Consensus 154 elHG~~~~~~C~~C~~~~ 171 (268)
+.+|.+-+.+|..|+.+.
T Consensus 12 ~p~s~Fl~VkCpdC~N~q 29 (67)
T COG2051 12 EPRSRFLRVKCPDCGNEQ 29 (67)
T ss_pred CCCceEEEEECCCCCCEE
Confidence 788999999999999875
No 110
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=47.52 E-value=15 Score=33.45 Aligned_cols=16 Identities=19% Similarity=0.173 Sum_probs=11.8
Q ss_pred ceeeCCCCcccchhhH
Q psy1452 161 RVMCLGCDYEIDRHKF 176 (268)
Q Consensus 161 ~~~C~~C~~~~~~~~~ 176 (268)
+.+|.+|+...+..++
T Consensus 38 w~kc~~C~~~~~~~~l 53 (296)
T CHL00174 38 WVQCENCYGLNYKKFL 53 (296)
T ss_pred eeECCCccchhhHHHH
Confidence 6789999988765443
No 111
>PLN02569 threonine synthase
Probab=47.31 E-value=11 Score=36.75 Aligned_cols=12 Identities=8% Similarity=-0.017 Sum_probs=10.2
Q ss_pred ceeeCCCCcccc
Q psy1452 161 RVMCLGCDYEID 172 (268)
Q Consensus 161 ~~~C~~C~~~~~ 172 (268)
.++|..|+++++
T Consensus 49 ~l~C~~Cg~~y~ 60 (484)
T PLN02569 49 FLECPLTGEKYS 60 (484)
T ss_pred ccEeCCCCCcCC
Confidence 479999999874
No 112
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=47.25 E-value=6.5 Score=27.90 Aligned_cols=11 Identities=36% Similarity=0.839 Sum_probs=5.1
Q ss_pred CCCCCCCCCee
Q psy1452 212 VPQCPHCHGDL 222 (268)
Q Consensus 212 iP~Cp~Cgg~l 222 (268)
.+.||.|+.+|
T Consensus 30 ~a~CPdC~~~L 40 (70)
T PF07191_consen 30 EAFCPDCGQPL 40 (70)
T ss_dssp EEE-TTT-SB-
T ss_pred cccCCCcccHH
Confidence 46677776554
No 113
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=46.93 E-value=8.3 Score=22.69 Aligned_cols=10 Identities=40% Similarity=1.374 Sum_probs=3.5
Q ss_pred CCCCCCCCCe
Q psy1452 212 VPQCPHCHGD 221 (268)
Q Consensus 212 iP~Cp~Cgg~ 221 (268)
+|+||.|++.
T Consensus 2 ~p~Cp~C~se 11 (30)
T PF08274_consen 2 LPKCPLCGSE 11 (30)
T ss_dssp S---TTT---
T ss_pred CCCCCCCCCc
Confidence 6899999864
No 114
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=46.64 E-value=10 Score=27.32 Aligned_cols=13 Identities=69% Similarity=0.997 Sum_probs=11.1
Q ss_pred cEEEEeCcccccc
Q psy1452 51 KILVVTGAGISTE 63 (268)
Q Consensus 51 ~ivi~tGAGiS~~ 63 (268)
++++.+|+|+|++
T Consensus 1 kIlvvC~~Gi~TS 13 (90)
T PF02302_consen 1 KILVVCGSGIGTS 13 (90)
T ss_dssp EEEEEESSSSHHH
T ss_pred CEEEECCChHHHH
Confidence 5889999999976
No 115
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=46.38 E-value=20 Score=23.37 Aligned_cols=12 Identities=33% Similarity=0.777 Sum_probs=9.8
Q ss_pred ceeeCCCCcccc
Q psy1452 161 RVMCLGCDYEID 172 (268)
Q Consensus 161 ~~~C~~C~~~~~ 172 (268)
+.+|..|+..|+
T Consensus 1 ky~C~~CgyvYd 12 (47)
T PF00301_consen 1 KYQCPVCGYVYD 12 (47)
T ss_dssp EEEETTTSBEEE
T ss_pred CcCCCCCCEEEc
Confidence 368999998875
No 116
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=46.24 E-value=13 Score=28.47 Aligned_cols=27 Identities=19% Similarity=0.314 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhCCcEEEEeCcccccccC
Q psy1452 38 DINKLKQFIEKYNKILVVTGAGISTESG 65 (268)
Q Consensus 38 ~l~~l~~~l~~a~~ivi~tGAGiS~~sG 65 (268)
+++++++.|.++++ |++.|.|-|...+
T Consensus 2 ~i~~~~~~i~~~~~-i~i~g~g~s~~~a 28 (139)
T cd05013 2 ALEKAVDLLAKARR-IYIFGVGSSGLVA 28 (139)
T ss_pred HHHHHHHHHHhCCE-EEEEEcCchHHHH
Confidence 58899999999976 6777888876554
No 117
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=45.43 E-value=14 Score=33.21 Aligned_cols=16 Identities=19% Similarity=0.459 Sum_probs=11.7
Q ss_pred ceeeCCCCcccchhhH
Q psy1452 161 RVMCLGCDYEIDRHKF 176 (268)
Q Consensus 161 ~~~C~~C~~~~~~~~~ 176 (268)
+.+|+.|+...+..++
T Consensus 28 w~KCp~c~~~~y~~eL 43 (294)
T COG0777 28 WTKCPSCGEMLYRKEL 43 (294)
T ss_pred eeECCCccceeeHHHH
Confidence 4689999988766554
No 118
>PRK11823 DNA repair protein RadA; Provisional
Probab=45.36 E-value=12 Score=36.09 Aligned_cols=11 Identities=27% Similarity=0.613 Sum_probs=8.1
Q ss_pred ceeeCCCCccc
Q psy1452 161 RVMCLGCDYEI 171 (268)
Q Consensus 161 ~~~C~~C~~~~ 171 (268)
..+|.+|+.+.
T Consensus 7 ~y~C~~Cg~~~ 17 (446)
T PRK11823 7 AYVCQECGAES 17 (446)
T ss_pred eEECCcCCCCC
Confidence 46788888765
No 119
>PF02233 PNTB: NAD(P) transhydrogenase beta subunit; InterPro: IPR012136 NAD(P) transhydrogenase catalyses the transfer of reducing equivalents between NAD(H) and NADP(H), coupled to the translocation of protons across a membrane []. It is an integral membrane protein found in most organisms except for yeasts, plants and some bacterial species. In bacterial species it is located in the cytoplasmic membrane, while in mitochondria it is located in the inner membrane. Under most physiological conditions this enzyme synthesises NADPH, driven by consumption of the proton electrochemical gradient. The resulting NADPH is subsequently used for biosynthetic reactions or the reduction of glutathione. The global structure of this enzyme is similar in all organisms, consisting of three distinct domains, though the polypeptide composition can vary. Domain I binds NAD(+)/NADH, domain II is a hydrophobic membrane-spanning domain, and domain III binds NADP(+)/NADPH. Domain I is composed of two subdomains, both of which form a Rossman fold, while domain III consists of a single Rossman fold where the NADP(+) is flipped relative to the normal orientation of bound nucleotides within the Rossman fold [, , ]. Several residues within these domains are thought to make functionally important interdomain contacts for hydride transfer between these domains []. Proton translocation occurs through domain II and is thought to induce conformational changes which are transmitted across domain III to the site of hydride transfer between domains I and III. This entry represents the beta subunit found in bacterial two-subunit NADP(H) transhydrogenases. This subunit forms domain III and part of the transmembrane domain II. ; GO: 0008750 NAD(P)+ transhydrogenase (AB-specific) activity, 0050661 NADP binding, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 1PT9_A 1DJL_A 1U31_B 2BRU_C 1PTJ_C 1HZZ_C 2FRD_C 2FSV_C 1XLT_C 1U2G_C ....
Probab=44.73 E-value=5.3 Score=38.63 Aligned_cols=43 Identities=23% Similarity=0.362 Sum_probs=31.1
Q ss_pred cccEEEeCCCCChH---HHHHHHHHhhhCCEEEEEccccccccccc
Q psy1452 223 KPDIVFFGDNIPRH---RMEKIDHLVRSCDGVLVLGSSLTVSFSKS 265 (268)
Q Consensus 223 rP~Vv~fgE~~~~~---~~~~~~~~~~~~DlllviGTSl~V~p~~~ 265 (268)
..||++=.-.+|.+ .++++...+.++|+.||||..-.|.|+++
T Consensus 355 HMNVLLAEa~VpYd~~~emdeiN~~f~~~Dv~lViGANDvVNPaA~ 400 (463)
T PF02233_consen 355 HMNVLLAEANVPYDIVKEMDEINPDFPDTDVVLVIGANDVVNPAAR 400 (463)
T ss_dssp HHHHHHHHCT--GGGEEEHHHHGGGGGG-SEEEEES-SGGG-CHHC
T ss_pred cceEEEEecCCCHHHHhhhhhcccchhcCCEEEEeccccccCchhc
Confidence 35788766666654 57888889999999999999999999875
No 120
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=44.48 E-value=15 Score=30.58 Aligned_cols=11 Identities=27% Similarity=0.607 Sum_probs=9.5
Q ss_pred ceeeCCCCccc
Q psy1452 161 RVMCLGCDYEI 171 (268)
Q Consensus 161 ~~~C~~C~~~~ 171 (268)
.++|..||...
T Consensus 134 ~~vC~vCGy~~ 144 (166)
T COG1592 134 VWVCPVCGYTH 144 (166)
T ss_pred EEEcCCCCCcc
Confidence 68999999865
No 121
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=44.23 E-value=13 Score=28.39 Aligned_cols=14 Identities=57% Similarity=0.800 Sum_probs=12.2
Q ss_pred CcEEEEeCcccccc
Q psy1452 50 NKILVVTGAGISTE 63 (268)
Q Consensus 50 ~~ivi~tGAGiS~~ 63 (268)
++|+++++||+|++
T Consensus 2 k~IlLvC~aGmSTS 15 (102)
T COG1440 2 KKILLVCAAGMSTS 15 (102)
T ss_pred ceEEEEecCCCcHH
Confidence 57999999999975
No 122
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=44.22 E-value=11 Score=28.04 Aligned_cols=13 Identities=62% Similarity=0.838 Sum_probs=11.2
Q ss_pred cEEEEeCcccccc
Q psy1452 51 KILVVTGAGISTE 63 (268)
Q Consensus 51 ~ivi~tGAGiS~~ 63 (268)
+|++.+|+|+|++
T Consensus 1 kIl~~Cg~G~sTS 13 (96)
T cd05564 1 KILLVCSAGMSTS 13 (96)
T ss_pred CEEEEcCCCchHH
Confidence 4899999999876
No 123
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=43.70 E-value=19 Score=38.94 Aligned_cols=82 Identities=23% Similarity=0.316 Sum_probs=40.1
Q ss_pred CCceEEecccccceeeCCCCcccchhhHHHHHHhhCCchhhhc--ccCCCCCCcccchhhhhcCCCCCCCCCCCeecccE
Q psy1452 149 NKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIES--QEMRPDGDVEMSEETISKFHVPQCPHCHGDLKPDI 226 (268)
Q Consensus 149 ~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~iP~Cp~Cgg~lrP~V 226 (268)
....+++... ..+|.+|+..... ..+|.+.... ....++...+++... ..--.||.||.++.+..
T Consensus 657 ~~G~ieVEV~--~rkCPkCG~~t~~--------~fCP~CGs~te~vy~CPsCGaev~~de---s~a~~CP~CGtplv~~~ 723 (1337)
T PRK14714 657 EGGVIEVEVG--RRRCPSCGTETYE--------NRCPDCGTHTEPVYVCPDCGAEVPPDE---SGRVECPRCDVELTPYQ 723 (1337)
T ss_pred cCCeEEEEEE--EEECCCCCCcccc--------ccCcccCCcCCCceeCccCCCccCCCc---cccccCCCCCCcccccc
Confidence 3456666654 6789999975421 1344332221 112223222222110 01236888888777655
Q ss_pred EEeCCCCC-hHHHHHHHHHhh
Q psy1452 227 VFFGDNIP-RHRMEKIDHLVR 246 (268)
Q Consensus 227 v~fgE~~~-~~~~~~~~~~~~ 246 (268)
.. .++ .+.+..|.+.+.
T Consensus 724 ~~---~i~~~~~~~~A~~~~g 741 (1337)
T PRK14714 724 RR---TINVKEEYRSALENVG 741 (1337)
T ss_pred eE---EecHHHHHHHHHHHhC
Confidence 43 223 335666666554
No 124
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=43.15 E-value=20 Score=32.44 Aligned_cols=15 Identities=13% Similarity=0.328 Sum_probs=11.7
Q ss_pred ceeeCCCCcccchhh
Q psy1452 161 RVMCLGCDYEIDRHK 175 (268)
Q Consensus 161 ~~~C~~C~~~~~~~~ 175 (268)
+.+|.+|+...+..+
T Consensus 26 ~~~c~~c~~~~~~~~ 40 (285)
T TIGR00515 26 WTKCPKCGQVLYTKE 40 (285)
T ss_pred eeECCCCcchhhHHH
Confidence 678999998876544
No 125
>PRK09411 carbamate kinase; Reviewed
Probab=43.14 E-value=24 Score=32.15 Aligned_cols=39 Identities=15% Similarity=0.451 Sum_probs=29.5
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhCCcEEEEeCcccccccCCCCccC
Q psy1452 27 FIPKHKPVEESDINKLKQFIEKYNKILVVTGAGISTESGIPDYRS 71 (268)
Q Consensus 27 ~~~~~~~~~~~~l~~l~~~l~~a~~ivi~tGAGiS~~sGiP~fr~ 71 (268)
.+|.|.|...-+.+.++.+++ ++.|||.+|.| |||.-.+
T Consensus 154 VVpSP~P~~iVe~~~I~~Ll~-~G~IVI~~gGG-----GIPV~~~ 192 (297)
T PRK09411 154 VVASPQPRKILDSEAIELLLK-EGHVVICSGGG-----GVPVTED 192 (297)
T ss_pred EccCCCCcceECHHHHHHHHH-CCCEEEecCCC-----CCCeEEc
Confidence 678888877777777777777 67888888877 7775543
No 126
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=43.14 E-value=19 Score=32.78 Aligned_cols=15 Identities=20% Similarity=0.470 Sum_probs=11.7
Q ss_pred ceeeCCCCcccchhh
Q psy1452 161 RVMCLGCDYEIDRHK 175 (268)
Q Consensus 161 ~~~C~~C~~~~~~~~ 175 (268)
+.+|.+|+...+..+
T Consensus 27 ~~~c~~c~~~~~~~~ 41 (292)
T PRK05654 27 WTKCPSCGQVLYRKE 41 (292)
T ss_pred eeECCCccchhhHHH
Confidence 678999998876544
No 127
>PRK05858 hypothetical protein; Provisional
Probab=43.07 E-value=27 Score=34.32 Aligned_cols=32 Identities=19% Similarity=0.207 Sum_probs=22.5
Q ss_pred eCCCCChHHHHHHHHHhhhCCEEEEEcccccc
Q psy1452 229 FGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTV 260 (268)
Q Consensus 229 fgE~~~~~~~~~~~~~~~~~DlllviGTSl~V 260 (268)
|.|.+|...-..+.+.+.++|+||++|+++..
T Consensus 244 ~~~~hpl~~~~~~~~~l~~aD~vl~vG~~~~~ 275 (542)
T PRK05858 244 VPADHPLAFSRARGKALGEADVVLVVGVPMDF 275 (542)
T ss_pred CCCCCchhhhHHHHHHHHhCCEEEEECCCCcc
Confidence 55555543334456788899999999998754
No 128
>PRK07524 hypothetical protein; Provisional
Probab=43.04 E-value=31 Score=33.77 Aligned_cols=28 Identities=11% Similarity=0.243 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy1452 34 VEESDINKLKQFIEKYNKILVVTGAGIS 61 (268)
Q Consensus 34 ~~~~~l~~l~~~l~~a~~ivi~tGAGiS 61 (268)
+....+++++++|++|++.+|++|.|+.
T Consensus 186 ~~~~~i~~~~~~L~~AkrPvil~G~g~~ 213 (535)
T PRK07524 186 PAPAALAQAAERLAAARRPLILAGGGAL 213 (535)
T ss_pred CCHHHHHHHHHHHHhCCCcEEEECCChH
Confidence 4567899999999999999999999985
No 129
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=42.57 E-value=31 Score=33.87 Aligned_cols=28 Identities=11% Similarity=0.419 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy1452 34 VEESDINKLKQFIEKYNKILVVTGAGIS 61 (268)
Q Consensus 34 ~~~~~l~~l~~~l~~a~~ivi~tGAGiS 61 (268)
.....+++++++|.+|++.+|++|.|+.
T Consensus 181 ~~~~~l~~~~~~L~~AkrPvIl~G~g~~ 208 (548)
T PRK08978 181 FPAAELEQARALLAQAKKPVLYVGGGVG 208 (548)
T ss_pred CCHHHHHHHHHHHHcCCCCEEEECCCcc
Confidence 3466899999999999999999999985
No 130
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=42.42 E-value=11 Score=22.19 Aligned_cols=14 Identities=29% Similarity=0.574 Sum_probs=7.7
Q ss_pred CCCCCCCCCeeccc
Q psy1452 212 VPQCPHCHGDLKPD 225 (268)
Q Consensus 212 iP~Cp~Cgg~lrP~ 225 (268)
-..|+.||+++++.
T Consensus 3 ~rfC~~CG~~t~~~ 16 (32)
T PF09297_consen 3 HRFCGRCGAPTKPA 16 (32)
T ss_dssp TSB-TTT--BEEE-
T ss_pred CcccCcCCccccCC
Confidence 35799999988764
No 131
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=42.38 E-value=28 Score=34.29 Aligned_cols=46 Identities=20% Similarity=0.317 Sum_probs=27.0
Q ss_pred cCCCCCCCCCCCeecccEEEeCCCCChHHHHHHHHHhhhCCEEEEEccccc
Q psy1452 209 KFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLT 259 (268)
Q Consensus 209 ~~~iP~Cp~Cgg~lrP~Vv~fgE~~~~~~~~~~~~~~~~~DlllviGTSl~ 259 (268)
...+|......|. -.|.|.+|-..=..+.+.+++||+||++|+++.
T Consensus 232 ~~~~pv~tt~~gk-----g~~p~~hp~~~g~~~~~~~~~aDlvl~lG~~~~ 277 (554)
T TIGR03254 232 KTGIPFLPMSMAK-----GLLPDTHPQSAAAARSFALAEADVVMLVGARLN 277 (554)
T ss_pred HHCCCEEEcCCcc-----eeCCCCCchhhhHHHHHHHhcCCEEEEECCCCc
Confidence 3346655433322 244555443211233457889999999999985
No 132
>PRK12354 carbamate kinase; Reviewed
Probab=41.61 E-value=28 Score=31.94 Aligned_cols=40 Identities=23% Similarity=0.555 Sum_probs=28.6
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhCCcEEEEeCcccccccCCCCccCC
Q psy1452 27 FIPKHKPVEESDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSE 72 (268)
Q Consensus 27 ~~~~~~~~~~~~l~~l~~~l~~a~~ivi~tGAGiS~~sGiP~fr~~ 72 (268)
.+|.|.|..--.++.+..+|+ ++.|+|.+|.| |||-..+.
T Consensus 153 Vv~SP~P~~ive~~~I~~Ll~-~g~ivIa~GGG-----GIPV~~~~ 192 (307)
T PRK12354 153 VVPSPRPKRIVEIRPIRWLLE-KGHLVICAGGG-----GIPVVYDA 192 (307)
T ss_pred EecCCCCcceeCHHHHHHHHH-CCCEEEEeCCC-----ccCeEecC
Confidence 567777766556666666666 77889988887 88866554
No 133
>PRK05638 threonine synthase; Validated
Probab=41.45 E-value=15 Score=35.24 Aligned_cols=11 Identities=27% Similarity=0.703 Sum_probs=9.2
Q ss_pred eeeCCCCcccc
Q psy1452 162 VMCLGCDYEID 172 (268)
Q Consensus 162 ~~C~~C~~~~~ 172 (268)
++|..|+++++
T Consensus 2 l~C~~Cg~~~~ 12 (442)
T PRK05638 2 MKCPKCGREYN 12 (442)
T ss_pred eEeCCCCCCCC
Confidence 68999999874
No 134
>COG1933 Archaeal DNA polymerase II, large subunit [DNA replication, recombination, and repair]
Probab=41.09 E-value=9.8 Score=33.48 Aligned_cols=10 Identities=40% Similarity=1.036 Sum_probs=8.3
Q ss_pred CCCCCCCCCe
Q psy1452 212 VPQCPHCHGD 221 (268)
Q Consensus 212 iP~Cp~Cgg~ 221 (268)
..+|++||+.
T Consensus 183 ~g~c~kcg~~ 192 (253)
T COG1933 183 DGKCPICGGK 192 (253)
T ss_pred cccccccCCe
Confidence 5689999993
No 135
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=40.86 E-value=34 Score=33.94 Aligned_cols=28 Identities=11% Similarity=0.222 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy1452 34 VEESDINKLKQFIEKYNKILVVTGAGIS 61 (268)
Q Consensus 34 ~~~~~l~~l~~~l~~a~~ivi~tGAGiS 61 (268)
+....+++++++|++|++.+|++|.|+.
T Consensus 185 ~~~~~v~~~~~~L~~AkrPvil~G~g~~ 212 (575)
T TIGR02720 185 PDVEAVTRAVQTLKAAERPVIYYGIGAR 212 (575)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEECcchh
Confidence 4567899999999999999999999996
No 136
>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP. Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).
Probab=40.85 E-value=34 Score=31.43 Aligned_cols=43 Identities=28% Similarity=0.569 Sum_probs=30.4
Q ss_pred cccccCCCCCCCHHHHHHHHHHHHhCCcEEEEeCcccccccCCCCccCC
Q psy1452 24 SISFIPKHKPVEESDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSE 72 (268)
Q Consensus 24 ~~~~~~~~~~~~~~~l~~l~~~l~~a~~ivi~tGAGiS~~sGiP~fr~~ 72 (268)
.-+.||.|.|..--+++.+..+|+ ++.|+|++|-| |+|.+.+.
T Consensus 156 ~rrvV~SP~P~~iv~~~~I~~Ll~-~g~IpI~~Ggg-----GiPv~~~~ 198 (308)
T cd04235 156 YRRVVPSPKPKDIVEIEAIKTLVD-NGVIVIAAGGG-----GIPVVREG 198 (308)
T ss_pred ceeeeCCCCCccccCHHHHHHHHH-CCCEEEEECCC-----ccCEEEcC
Confidence 344778888866555666665555 78889988877 88877653
No 137
>TIGR00354 polC DNA polymerase, archaeal type II, large subunit. This model represents the large subunit, DP2, of a two subunit novel Archaeal replicative DNA polymerase first characterized for Pyrococcus furiosus. Structure of DP2 appears to be organized as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit.
Probab=40.75 E-value=23 Score=37.26 Aligned_cols=34 Identities=15% Similarity=0.094 Sum_probs=20.7
Q ss_pred CCCCCCCCCeecccEEEeCCCCC-hHHHHHHHHHhh
Q psy1452 212 VPQCPHCHGDLKPDIVFFGDNIP-RHRMEKIDHLVR 246 (268)
Q Consensus 212 iP~Cp~Cgg~lrP~Vv~fgE~~~-~~~~~~~~~~~~ 246 (268)
-.+||.||+...|.-.. .-.++ .+.+..|.+.+.
T Consensus 637 k~rCP~CG~~Te~~~pc-~~~i~l~~~~~~A~~~lg 671 (1095)
T TIGR00354 637 WLKCPVCGELTEQLYYG-KRKVDLRELYEEAIANLG 671 (1095)
T ss_pred cccCCCCCCccccccce-eEEecHHHHHHHHHHHhC
Confidence 46899999986655544 11233 345666666654
No 138
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=40.63 E-value=11 Score=22.80 Aligned_cols=14 Identities=43% Similarity=0.949 Sum_probs=6.3
Q ss_pred CCCCCCCeecccEE
Q psy1452 214 QCPHCHGDLKPDIV 227 (268)
Q Consensus 214 ~Cp~Cgg~lrP~Vv 227 (268)
.||.||+.|...|.
T Consensus 2 fC~~CG~~l~~~ip 15 (34)
T PF14803_consen 2 FCPQCGGPLERRIP 15 (34)
T ss_dssp B-TTT--B-EEE--
T ss_pred ccccccChhhhhcC
Confidence 49999999876655
No 139
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=40.63 E-value=14 Score=35.79 Aligned_cols=13 Identities=15% Similarity=0.506 Sum_probs=9.9
Q ss_pred cceeeCCCCcccc
Q psy1452 160 FRVMCLGCDYEID 172 (268)
Q Consensus 160 ~~~~C~~C~~~~~ 172 (268)
...+|.+|+.+..
T Consensus 6 ~~y~C~~Cg~~~~ 18 (454)
T TIGR00416 6 SKFVCQHCGADSP 18 (454)
T ss_pred CeEECCcCCCCCc
Confidence 3578999998763
No 140
>PRK07586 hypothetical protein; Validated
Probab=40.58 E-value=34 Score=33.22 Aligned_cols=29 Identities=7% Similarity=0.140 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEeCccccc
Q psy1452 34 VEESDINKLKQFIEKYNKILVVTGAGIST 62 (268)
Q Consensus 34 ~~~~~l~~l~~~l~~a~~ivi~tGAGiS~ 62 (268)
.....+++++++|.+|++.||++|.|+..
T Consensus 182 ~~~~~v~~~~~~L~~A~rPvi~~G~g~~~ 210 (514)
T PRK07586 182 VDPAAVEAAAAALRSGEPTVLLLGGRALR 210 (514)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEeCCcccc
Confidence 45678999999999999999999999863
No 141
>KOG4718|consensus
Probab=40.42 E-value=19 Score=31.19 Aligned_cols=21 Identities=5% Similarity=-0.002 Sum_probs=14.2
Q ss_pred CCCCCCHHHHHHHHhHhcCCC
Q psy1452 112 SSFQPNANHYALKQMEDNEKL 132 (268)
Q Consensus 112 ~~~~P~~~H~~L~~L~~~~~~ 132 (268)
...+|+..-..|.+|++.|-.
T Consensus 132 k~L~ks~iE~lLqkf~q~gwf 152 (235)
T KOG4718|consen 132 KPLKKSRIEELLQKFIQMGWF 152 (235)
T ss_pred CCCCHHHHHHHHHHHHHhchh
Confidence 456677777777788765544
No 142
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=40.42 E-value=37 Score=33.83 Aligned_cols=28 Identities=18% Similarity=0.375 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy1452 34 VEESDINKLKQFIEKYNKILVVTGAGIS 61 (268)
Q Consensus 34 ~~~~~l~~l~~~l~~a~~ivi~tGAGiS 61 (268)
+..+.+++++++|++|++.+|++|.|+.
T Consensus 193 ~~~~~i~~a~~~L~~AkrPvi~~G~g~~ 220 (597)
T PRK08273 193 PYDEDLRRAAEVLNAGRKVAILVGAGAL 220 (597)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEECcchH
Confidence 3567899999999999999999999985
No 143
>PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. In archaebacteria, there is generally a single form of RNA polymerase which also consist of an oligomeric assemblage of 10 to 13 polypeptides. It has recently been shown [], [] that small subunits of about 15 kDa, found in polymerase types I and II, are highly conserved. These proteins contain a probable zinc finger in their N-terminal region and a C-terminal zinc ribbon domain (see IPR001222 from INTERPRO).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_I 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I ....
Probab=40.26 E-value=12 Score=22.67 Aligned_cols=12 Identities=42% Similarity=0.927 Sum_probs=9.9
Q ss_pred CCCCCCCeeccc
Q psy1452 214 QCPHCHGDLKPD 225 (268)
Q Consensus 214 ~Cp~Cgg~lrP~ 225 (268)
-||.||..|.|.
T Consensus 3 FCp~C~nlL~p~ 14 (35)
T PF02150_consen 3 FCPECGNLLYPK 14 (35)
T ss_dssp BETTTTSBEEEE
T ss_pred eCCCCCccceEc
Confidence 599999988764
No 144
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=40.23 E-value=14 Score=24.96 Aligned_cols=13 Identities=38% Similarity=0.917 Sum_probs=10.1
Q ss_pred CCCCCCCCCeecc
Q psy1452 212 VPQCPHCHGDLKP 224 (268)
Q Consensus 212 iP~Cp~Cgg~lrP 224 (268)
.-.||+|||.+-+
T Consensus 41 ~~~CPNCgGelv~ 53 (57)
T PF06906_consen 41 NGVCPNCGGELVR 53 (57)
T ss_pred cCcCcCCCCcccc
Confidence 3589999998643
No 145
>KOG2906|consensus
Probab=40.14 E-value=22 Score=26.88 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=16.2
Q ss_pred eEEecccccceeeCCCCcccch
Q psy1452 152 VIEMHGTAFRVMCLGCDYEIDR 173 (268)
Q Consensus 152 v~elHG~~~~~~C~~C~~~~~~ 173 (268)
+++-.++-.++-|..|...+..
T Consensus 12 ive~g~~~~rf~C~tCpY~~~I 33 (105)
T KOG2906|consen 12 IVESGESCNRFSCRTCPYVFPI 33 (105)
T ss_pred EEecCCeEeeEEcCCCCceeeE
Confidence 5566666688999999876643
No 146
>PRK13796 GTPase YqeH; Provisional
Probab=39.82 E-value=61 Score=30.25 Aligned_cols=37 Identities=14% Similarity=0.237 Sum_probs=23.2
Q ss_pred CCCCCCCCCeecccEEEeCC----CCChHHHHHHHHHhhhCC-EEEE
Q psy1452 212 VPQCPHCHGDLKPDIVFFGD----NIPRHRMEKIDHLVRSCD-GVLV 253 (268)
Q Consensus 212 iP~Cp~Cgg~lrP~Vv~fgE----~~~~~~~~~~~~~~~~~D-lllv 253 (268)
...|.+|-... .||+ .++++.+.+..+.+.++| +|+.
T Consensus 34 ~~~C~RC~~l~-----hy~~~~~~~~~~~~~~~~l~~i~~~~~lIv~ 75 (365)
T PRK13796 34 EVYCQRCFRLK-----HYNEIQDVSLTDDDFLKLLNGIGDSDALVVN 75 (365)
T ss_pred CeEchhhhhhh-----ccCcccCCCCCHHHHHHHHHhhcccCcEEEE
Confidence 46899997543 3444 345666777777777666 4443
No 147
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=39.48 E-value=28 Score=28.87 Aligned_cols=24 Identities=13% Similarity=0.214 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhCCcEEEEeCcccc
Q psy1452 38 DINKLKQFIEKYNKILVVTGAGIS 61 (268)
Q Consensus 38 ~l~~l~~~l~~a~~ivi~tGAGiS 61 (268)
.=++++++|++|++.+|+.|.|+.
T Consensus 16 ~p~~aa~lLk~AKRPvIivG~ga~ 39 (162)
T TIGR00315 16 SPKLVAMMIKRAKRPLLIVGPENL 39 (162)
T ss_pred CHHHHHHHHHcCCCcEEEECCCcC
Confidence 348899999999999999999986
No 148
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=39.34 E-value=37 Score=33.62 Aligned_cols=29 Identities=14% Similarity=0.218 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEeCccccc
Q psy1452 34 VEESDINKLKQFIEKYNKILVVTGAGIST 62 (268)
Q Consensus 34 ~~~~~l~~l~~~l~~a~~ivi~tGAGiS~ 62 (268)
.....+++++++|++|++.+|+.|.|+..
T Consensus 205 ~~~~~~~~~~~~L~~AkrPvi~~G~g~~~ 233 (569)
T PRK08327 205 PDPEDIARAAEMLAAAERPVIITWRAGRT 233 (569)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEecccCC
Confidence 45678999999999999999999999863
No 149
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=39.15 E-value=40 Score=33.33 Aligned_cols=28 Identities=11% Similarity=0.418 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy1452 34 VEESDINKLKQFIEKYNKILVVTGAGIS 61 (268)
Q Consensus 34 ~~~~~l~~l~~~l~~a~~ivi~tGAGiS 61 (268)
.....+++++++|.+|++.+|++|.|+.
T Consensus 192 ~~~~~~~~~~~~L~~A~rPvil~G~g~~ 219 (572)
T PRK06456 192 IDRLALKKAAEILINAERPIILVGTGVV 219 (572)
T ss_pred CCHHHHHHHHHHHHhCCCcEEEECCCCc
Confidence 3467899999999999999999999985
No 150
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=39.14 E-value=33 Score=34.32 Aligned_cols=28 Identities=25% Similarity=0.344 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy1452 34 VEESDINKLKQFIEKYNKILVVTGAGIS 61 (268)
Q Consensus 34 ~~~~~l~~l~~~l~~a~~ivi~tGAGiS 61 (268)
+..+.+++++++|++|++.||++|.|+.
T Consensus 209 ~~~~~v~~~~~~L~~AkrPvI~~G~g~~ 236 (616)
T PRK07418 209 GNPRQINAALKLIEEAERPLLYVGGGAI 236 (616)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECCCcC
Confidence 4567899999999999999999999985
No 151
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=38.86 E-value=15 Score=28.00 Aligned_cols=14 Identities=36% Similarity=0.563 Sum_probs=12.2
Q ss_pred CcEEEEeCcccccc
Q psy1452 50 NKILVVTGAGISTE 63 (268)
Q Consensus 50 ~~ivi~tGAGiS~~ 63 (268)
++|++++|+|+|++
T Consensus 4 kkIllvC~~G~sTS 17 (106)
T PRK10499 4 KHIYLFCSAGMSTS 17 (106)
T ss_pred CEEEEECCCCccHH
Confidence 57999999999975
No 152
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=38.83 E-value=27 Score=34.30 Aligned_cols=21 Identities=38% Similarity=0.675 Sum_probs=17.3
Q ss_pred HHHHHhhhCCEEEEEcccccc
Q psy1452 240 KIDHLVRSCDGVLVLGSSLTV 260 (268)
Q Consensus 240 ~~~~~~~~~DlllviGTSl~V 260 (268)
.+.+.+++||++|++|++|.-
T Consensus 261 ~~~~~l~~aDliL~iG~~l~~ 281 (535)
T TIGR03394 261 ELSRLVEESDGLLLLGVILSD 281 (535)
T ss_pred HHHHHHHhCCEEEEECCcccc
Confidence 456678899999999999853
No 153
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=38.82 E-value=40 Score=33.35 Aligned_cols=28 Identities=14% Similarity=0.366 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy1452 34 VEESDINKLKQFIEKYNKILVVTGAGIS 61 (268)
Q Consensus 34 ~~~~~l~~l~~~l~~a~~ivi~tGAGiS 61 (268)
.....+++++++|.+|++.+|++|.|+.
T Consensus 198 ~~~~~i~~~~~~L~~AkrPvil~G~g~~ 225 (578)
T PRK06112 198 PAPQRLAEAASLLAQAQRPVVVAGGGVH 225 (578)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEECCCcc
Confidence 4567899999999999999999999975
No 154
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=38.67 E-value=40 Score=32.94 Aligned_cols=28 Identities=11% Similarity=0.313 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy1452 34 VEESDINKLKQFIEKYNKILVVTGAGIS 61 (268)
Q Consensus 34 ~~~~~l~~l~~~l~~a~~ivi~tGAGiS 61 (268)
+....+++++++|.+|++.+|++|.|..
T Consensus 191 ~~~~~~~~~~~~L~~AkrPvIl~G~g~~ 218 (530)
T PRK07092 191 PDPAALARLGDALDAARRPALVVGPAVD 218 (530)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEECCCcc
Confidence 4567899999999999999999999985
No 155
>PRK00762 hypA hydrogenase nickel incorporation protein; Provisional
Probab=38.63 E-value=17 Score=28.58 Aligned_cols=17 Identities=24% Similarity=0.516 Sum_probs=10.6
Q ss_pred EecccccceeeCCCCccc
Q psy1452 154 EMHGTAFRVMCLGCDYEI 171 (268)
Q Consensus 154 elHG~~~~~~C~~C~~~~ 171 (268)
+++=--...+| .|++.+
T Consensus 63 ~I~~vp~~~~C-~Cg~~~ 79 (124)
T PRK00762 63 IVEMIPVEIEC-ECGYEG 79 (124)
T ss_pred EEEecCeeEEe-eCcCcc
Confidence 33333345789 999765
No 156
>PRK07586 hypothetical protein; Validated
Probab=37.73 E-value=33 Score=33.36 Aligned_cols=20 Identities=10% Similarity=0.195 Sum_probs=16.8
Q ss_pred HHHHHHhhhCCEEEEEcccc
Q psy1452 239 EKIDHLVRSCDGVLVLGSSL 258 (268)
Q Consensus 239 ~~~~~~~~~~DlllviGTSl 258 (268)
..+.+.+++||+||++|+++
T Consensus 254 ~~~~~~~~~aDlvl~vG~~~ 273 (514)
T PRK07586 254 EQALAQLAGVRHLVLVGAKA 273 (514)
T ss_pred HHHHHHHhcCCEEEEECCCC
Confidence 45567888999999999985
No 157
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=37.70 E-value=42 Score=33.20 Aligned_cols=28 Identities=14% Similarity=0.395 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy1452 34 VEESDINKLKQFIEKYNKILVVTGAGIS 61 (268)
Q Consensus 34 ~~~~~l~~l~~~l~~a~~ivi~tGAGiS 61 (268)
+..+.+++++++|.+|++.+|++|.|+-
T Consensus 198 ~~~~~l~~~~~~L~~AkrPvIi~G~g~~ 225 (569)
T PRK09259 198 PAPEAVDRALDLLKKAKRPLIILGKGAA 225 (569)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECcCcc
Confidence 3467899999999999999999999985
No 158
>PRK07524 hypothetical protein; Provisional
Probab=37.69 E-value=28 Score=34.02 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=17.6
Q ss_pred HHHHHHhhhCCEEEEEccccc
Q psy1452 239 EKIDHLVRSCDGVLVLGSSLT 259 (268)
Q Consensus 239 ~~~~~~~~~~DlllviGTSl~ 259 (268)
..+.+.+++||+||++|++|.
T Consensus 255 ~~~~~~~~~aDlvl~vG~~~~ 275 (535)
T PRK07524 255 PAVRALIAEADVVLAVGTELG 275 (535)
T ss_pred HHHHHHHHhCCEEEEeCCCcC
Confidence 456678889999999999974
No 159
>PRK08617 acetolactate synthase; Reviewed
Probab=37.61 E-value=41 Score=33.06 Aligned_cols=28 Identities=25% Similarity=0.335 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy1452 34 VEESDINKLKQFIEKYNKILVVTGAGIS 61 (268)
Q Consensus 34 ~~~~~l~~l~~~l~~a~~ivi~tGAGiS 61 (268)
.....+++++++|.+|++.+|++|.|+.
T Consensus 186 ~~~~~i~~~~~~L~~AkrPvi~~G~g~~ 213 (552)
T PRK08617 186 ASPEDINYLAELIKNAKLPVLLLGMRAS 213 (552)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 3456899999999999999999999974
No 160
>COG1773 Rubredoxin [Energy production and conversion]
Probab=37.58 E-value=43 Score=22.59 Aligned_cols=13 Identities=38% Similarity=0.634 Sum_probs=10.8
Q ss_pred cceeeCCCCcccc
Q psy1452 160 FRVMCLGCDYEID 172 (268)
Q Consensus 160 ~~~~C~~C~~~~~ 172 (268)
..++|..|+..|+
T Consensus 2 ~~~~C~~CG~vYd 14 (55)
T COG1773 2 KRWRCSVCGYVYD 14 (55)
T ss_pred CceEecCCceEec
Confidence 4689999999874
No 161
>PRK06154 hypothetical protein; Provisional
Probab=37.42 E-value=43 Score=33.16 Aligned_cols=30 Identities=7% Similarity=0.237 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEeCcccccc
Q psy1452 34 VEESDINKLKQFIEKYNKILVVTGAGISTE 63 (268)
Q Consensus 34 ~~~~~l~~l~~~l~~a~~ivi~tGAGiS~~ 63 (268)
.....+++++++|.+|++.+|++|.|+..+
T Consensus 199 ~~~~~i~~aa~~L~~A~rPvil~G~g~~~~ 228 (565)
T PRK06154 199 ADPVEVVEAAALLLAAERPVIYAGQGVLYA 228 (565)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECCCcccc
Confidence 456789999999999999999999999633
No 162
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=37.40 E-value=29 Score=34.60 Aligned_cols=20 Identities=40% Similarity=0.718 Sum_probs=16.8
Q ss_pred HHHHHhhhCCEEEEEccccc
Q psy1452 240 KIDHLVRSCDGVLVLGSSLT 259 (268)
Q Consensus 240 ~~~~~~~~~DlllviGTSl~ 259 (268)
.+.+.+++||+||++||++.
T Consensus 265 ~a~~~~~~aDlvl~lG~~~~ 284 (597)
T PRK08273 265 PSYELMRECDTLLMVGSSFP 284 (597)
T ss_pred HHHHHHHhCCEEEEeCCCCC
Confidence 45667889999999999974
No 163
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=37.32 E-value=44 Score=33.13 Aligned_cols=29 Identities=7% Similarity=0.291 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEeCccccc
Q psy1452 34 VEESDINKLKQFIEKYNKILVVTGAGIST 62 (268)
Q Consensus 34 ~~~~~l~~l~~~l~~a~~ivi~tGAGiS~ 62 (268)
.....+++++++|++|++.+|++|.|+..
T Consensus 181 ~~~~~i~~~~~~L~~A~rP~i~~G~g~~~ 209 (579)
T TIGR03457 181 GGATSLAQAARLLAEAKFPVIISGGGVVM 209 (579)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECcCccc
Confidence 35567999999999999999999999863
No 164
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=37.24 E-value=44 Score=33.27 Aligned_cols=28 Identities=21% Similarity=0.471 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHHhCCcEEEEeCccccc
Q psy1452 35 EESDINKLKQFIEKYNKILVVTGAGIST 62 (268)
Q Consensus 35 ~~~~l~~l~~~l~~a~~ivi~tGAGiS~ 62 (268)
....+++++++|.+|++.+|++|.|+..
T Consensus 188 ~~~~i~~~~~~L~~AkrPvIl~G~g~~~ 215 (588)
T TIGR01504 188 TRAQIEKAVEMLNAAERPLIVAGGGVIN 215 (588)
T ss_pred CHHHHHHHHHHHHhCCCcEEEECCCcch
Confidence 4678999999999999999999999863
No 165
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=37.03 E-value=34 Score=33.64 Aligned_cols=38 Identities=21% Similarity=0.302 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEeCccccc------------ccCCCCccC
Q psy1452 34 VEESDINKLKQFIEKYNKILVVTGAGIST------------ESGIPDYRS 71 (268)
Q Consensus 34 ~~~~~l~~l~~~l~~a~~ivi~tGAGiS~------------~sGiP~fr~ 71 (268)
....-++.+.++|.++++.+|++|+.+|. +.|+|.|.-
T Consensus 194 ~~~e~i~~i~~lI~~ak~p~ILad~~~~r~~~~~~~~~l~~~t~~p~~~~ 243 (557)
T COG3961 194 ALSEVIDTIAELINKAKKPVILADALVSRFGLEKELKKLINATGFPVATL 243 (557)
T ss_pred HHHHHHHHHHHHHhccCCcEEecchhhhhhhhHHHHHHHHHhcCCCeEEe
Confidence 44567899999999999999999999984 457777654
No 166
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=36.73 E-value=29 Score=34.08 Aligned_cols=21 Identities=19% Similarity=0.430 Sum_probs=17.2
Q ss_pred HHHHHhhhCCEEEEEcccccc
Q psy1452 240 KIDHLVRSCDGVLVLGSSLTV 260 (268)
Q Consensus 240 ~~~~~~~~~DlllviGTSl~V 260 (268)
.+.+.+++||+||++|++|.-
T Consensus 265 ~~~~~~~~aDlvl~lG~~l~~ 285 (539)
T TIGR03393 265 AVKEAIEGADAVICVGVRFTD 285 (539)
T ss_pred HHHHHHhhCCEEEEECCcccc
Confidence 455678899999999998753
No 167
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=36.71 E-value=40 Score=32.88 Aligned_cols=30 Identities=27% Similarity=0.529 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy1452 32 KPVEESDINKLKQFIEKYNKILVVTGAGIS 61 (268)
Q Consensus 32 ~~~~~~~l~~l~~~l~~a~~ivi~tGAGiS 61 (268)
.+++...|..++.+|+.+++-+|.+|.|+-
T Consensus 212 ~~Pd~~eL~~A~~lik~ak~PlIvaGGGv~ 241 (617)
T COG3962 212 PPPDERELADAAALIKSAKKPLIVAGGGVL 241 (617)
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEecCcee
Confidence 556778999999999999999999999964
No 168
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=36.60 E-value=30 Score=34.35 Aligned_cols=20 Identities=35% Similarity=0.478 Sum_probs=16.7
Q ss_pred HHHHHhhhCCEEEEEccccc
Q psy1452 240 KIDHLVRSCDGVLVLGSSLT 259 (268)
Q Consensus 240 ~~~~~~~~~DlllviGTSl~ 259 (268)
.+.+.+++||++|+||++|.
T Consensus 259 ~~~~~~~~aDlvl~lG~~l~ 278 (588)
T PRK07525 259 AAMELIAKADVVLALGTRLN 278 (588)
T ss_pred HHHHHHHhCCEEEEECCCCc
Confidence 35577889999999999874
No 169
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=36.47 E-value=39 Score=33.54 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy1452 34 VEESDINKLKQFIEKYNKILVVTGAGIS 61 (268)
Q Consensus 34 ~~~~~l~~l~~~l~~a~~ivi~tGAGiS 61 (268)
+..+.+++++++|.+|++.+|++|.|+-
T Consensus 202 ~~~~~v~~a~~~L~~AkrPvil~G~g~~ 229 (585)
T CHL00099 202 PTIKRIEQAAKLILQSSQPLLYVGGGAI 229 (585)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEECCCCc
Confidence 3467899999999999999999999984
No 170
>PRK06154 hypothetical protein; Provisional
Probab=36.44 E-value=31 Score=34.19 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=17.5
Q ss_pred HHHHHhhhCCEEEEEcccccc
Q psy1452 240 KIDHLVRSCDGVLVLGSSLTV 260 (268)
Q Consensus 240 ~~~~~~~~~DlllviGTSl~V 260 (268)
.+.+.+++||+||+||++|.-
T Consensus 273 ~~~~~~~~aDlvL~lG~~l~~ 293 (565)
T PRK06154 273 TVAHFLREADVLFGIGCSLTR 293 (565)
T ss_pred HHHHHHHhCCEEEEECCCCcc
Confidence 456778899999999999863
No 171
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=35.94 E-value=31 Score=34.50 Aligned_cols=20 Identities=20% Similarity=0.487 Sum_probs=16.9
Q ss_pred HHHHHhhhCCEEEEEccccc
Q psy1452 240 KIDHLVRSCDGVLVLGSSLT 259 (268)
Q Consensus 240 ~~~~~~~~~DlllviGTSl~ 259 (268)
.+.+.+.+||+||+|||++.
T Consensus 283 ~~~~~l~~aDlvL~vG~~~~ 302 (616)
T PRK07418 283 YANFAVTECDLLIAVGARFD 302 (616)
T ss_pred HHHHHHHhCCEEEEEcCCCC
Confidence 35667889999999999975
No 172
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=35.94 E-value=31 Score=34.11 Aligned_cols=22 Identities=9% Similarity=0.249 Sum_probs=17.9
Q ss_pred HHHHHhhhCCEEEEEccccccc
Q psy1452 240 KIDHLVRSCDGVLVLGSSLTVS 261 (268)
Q Consensus 240 ~~~~~~~~~DlllviGTSl~V~ 261 (268)
.+.+.+.+||+||+|||++...
T Consensus 265 ~~~~~l~~aDlvl~vG~~~~~~ 286 (574)
T PRK07979 265 EANMTMHNADVIFAVGVRFDDR 286 (574)
T ss_pred HHHHHHHhCCEEEEeCCCCccc
Confidence 4556888999999999998544
No 173
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=35.79 E-value=15 Score=27.47 Aligned_cols=12 Identities=25% Similarity=0.744 Sum_probs=9.2
Q ss_pred ceeeCCCCcccc
Q psy1452 161 RVMCLGCDYEID 172 (268)
Q Consensus 161 ~~~C~~C~~~~~ 172 (268)
-.+|-+||..+.
T Consensus 58 Pa~CkkCGfef~ 69 (97)
T COG3357 58 PARCKKCGFEFR 69 (97)
T ss_pred ChhhcccCcccc
Confidence 358999998763
No 174
>PRK07064 hypothetical protein; Provisional
Probab=35.78 E-value=45 Score=32.66 Aligned_cols=28 Identities=14% Similarity=0.275 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy1452 34 VEESDINKLKQFIEKYNKILVVTGAGIS 61 (268)
Q Consensus 34 ~~~~~l~~l~~~l~~a~~ivi~tGAGiS 61 (268)
+....+++++++|.+|++.+|++|.|+.
T Consensus 188 ~~~~~i~~~~~~l~~AkrPvi~~G~g~~ 215 (544)
T PRK07064 188 PDAAAVAELAERLAAARRPLLWLGGGAR 215 (544)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECCChH
Confidence 4567899999999999999999999984
No 175
>PLN02470 acetolactate synthase
Probab=35.54 E-value=32 Score=34.13 Aligned_cols=20 Identities=25% Similarity=0.277 Sum_probs=16.7
Q ss_pred HHHHhhhCCEEEEEcccccc
Q psy1452 241 IDHLVRSCDGVLVLGSSLTV 260 (268)
Q Consensus 241 ~~~~~~~~DlllviGTSl~V 260 (268)
+.+.+++||+||+||++|..
T Consensus 273 ~~~~~~~aDlvl~lG~~l~~ 292 (585)
T PLN02470 273 ANYAVDSADLLLAFGVRFDD 292 (585)
T ss_pred HHHHHHhCCEEEEECCCCcc
Confidence 45678899999999999843
No 176
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=35.52 E-value=40 Score=33.33 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHHhCCcEEEEeCcccccc
Q psy1452 35 EESDINKLKQFIEKYNKILVVTGAGISTE 63 (268)
Q Consensus 35 ~~~~l~~l~~~l~~a~~ivi~tGAGiS~~ 63 (268)
....+++++++|.+|++.+|++|.|+..+
T Consensus 192 ~~~~i~~a~~~L~~A~rPvi~~G~g~~~~ 220 (574)
T PRK07979 192 HKGQIKRALQTLVAAKKPVVYVGGGAINA 220 (574)
T ss_pred CHHHHHHHHHHHHcCCCCEEEECCCcccc
Confidence 46789999999999999999999998643
No 177
>PRK08329 threonine synthase; Validated
Probab=35.51 E-value=18 Score=33.49 Aligned_cols=11 Identities=18% Similarity=0.634 Sum_probs=9.1
Q ss_pred eeeCCCCcccc
Q psy1452 162 VMCLGCDYEID 172 (268)
Q Consensus 162 ~~C~~C~~~~~ 172 (268)
++|..|+++++
T Consensus 2 l~C~~Cg~~~~ 12 (347)
T PRK08329 2 LRCTKCGRTYE 12 (347)
T ss_pred cCcCCCCCCcC
Confidence 68999998874
No 178
>COG3925 N-terminal domain of the phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=35.45 E-value=23 Score=26.63 Aligned_cols=15 Identities=33% Similarity=0.510 Sum_probs=12.5
Q ss_pred hhCCEEEEEcccccc
Q psy1452 246 RSCDGVLVLGSSLTV 260 (268)
Q Consensus 246 ~~~DlllviGTSl~V 260 (268)
.++||+||.|+|+-=
T Consensus 39 ~dAeLviV~G~sipn 53 (103)
T COG3925 39 NDAELVIVFGSSIPN 53 (103)
T ss_pred CcccEEEEeccccCC
Confidence 479999999999843
No 179
>PLN02470 acetolactate synthase
Probab=35.35 E-value=45 Score=33.09 Aligned_cols=28 Identities=21% Similarity=0.417 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy1452 34 VEESDINKLKQFIEKYNKILVVTGAGIS 61 (268)
Q Consensus 34 ~~~~~l~~l~~~l~~a~~ivi~tGAGiS 61 (268)
...+.+++++++|.+|++.+|++|.|+.
T Consensus 200 ~~~~~i~~~~~~L~~A~rPvI~~G~g~~ 227 (585)
T PLN02470 200 PEKSQLEQIVRLISESKRPVVYVGGGCL 227 (585)
T ss_pred CCHHHHHHHHHHHHcCCCCEEEECCChh
Confidence 3467899999999999999999999985
No 180
>PRK08322 acetolactate synthase; Reviewed
Probab=35.34 E-value=37 Score=33.23 Aligned_cols=23 Identities=9% Similarity=0.161 Sum_probs=18.4
Q ss_pred HHHHHhhhCCEEEEEcccccccc
Q psy1452 240 KIDHLVRSCDGVLVLGSSLTVSF 262 (268)
Q Consensus 240 ~~~~~~~~~DlllviGTSl~V~p 262 (268)
.+.+.+++||+||++|+++.-.+
T Consensus 255 ~~~~~l~~aDlil~lG~~l~~~~ 277 (547)
T PRK08322 255 YVHCAIEHADLIINVGHDVIEKP 277 (547)
T ss_pred HHHHHHHhCCEEEEECCCCcccc
Confidence 35567889999999999987544
No 181
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=35.33 E-value=19 Score=24.21 Aligned_cols=12 Identities=25% Similarity=0.772 Sum_probs=10.0
Q ss_pred CCCCCCCCCeec
Q psy1452 212 VPQCPHCHGDLK 223 (268)
Q Consensus 212 iP~Cp~Cgg~lr 223 (268)
+-.||.||..++
T Consensus 22 iV~Cp~CGaele 33 (54)
T TIGR01206 22 LVICDECGAELE 33 (54)
T ss_pred EEeCCCCCCEEE
Confidence 558999998876
No 182
>PRK08322 acetolactate synthase; Reviewed
Probab=34.98 E-value=51 Score=32.28 Aligned_cols=28 Identities=21% Similarity=0.372 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy1452 34 VEESDINKLKQFIEKYNKILVVTGAGIS 61 (268)
Q Consensus 34 ~~~~~l~~l~~~l~~a~~ivi~tGAGiS 61 (268)
...+.+++++++|.+|++.+|++|.|+.
T Consensus 181 ~~~~~i~~~~~~l~~A~rPviv~G~g~~ 208 (547)
T PRK08322 181 ASPKAIERAAEAIQAAKNPLILIGAGAN 208 (547)
T ss_pred CCHHHHHHHHHHHHhCCCcEEEECCCcc
Confidence 3467899999999999999999999985
No 183
>COG0375 HybF Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) [General function prediction only]
Probab=34.92 E-value=25 Score=27.48 Aligned_cols=12 Identities=33% Similarity=0.814 Sum_probs=8.2
Q ss_pred cceeeCCCCccc
Q psy1452 160 FRVMCLGCDYEI 171 (268)
Q Consensus 160 ~~~~C~~C~~~~ 171 (268)
....|..|++..
T Consensus 69 ~~~~C~~C~~~~ 80 (115)
T COG0375 69 AECWCLDCGQEV 80 (115)
T ss_pred cEEEeccCCCee
Confidence 346788887655
No 184
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=34.88 E-value=34 Score=33.96 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=17.3
Q ss_pred HHHHHhhhCCEEEEEcccccc
Q psy1452 240 KIDHLVRSCDGVLVLGSSLTV 260 (268)
Q Consensus 240 ~~~~~~~~~DlllviGTSl~V 260 (268)
.+.+.+.+||+||++|+++..
T Consensus 273 ~~~~~l~~aDlil~vG~~~~~ 293 (570)
T PRK06725 273 AANMAVTECDLLLALGVRFDD 293 (570)
T ss_pred HHHHHHHhCCEEEEeCCCCCc
Confidence 355678899999999999853
No 185
>PRK14715 DNA polymerase II large subunit; Provisional
Probab=34.63 E-value=30 Score=37.78 Aligned_cols=17 Identities=18% Similarity=0.325 Sum_probs=12.2
Q ss_pred CCCHHHHHHHHHHHHhC
Q psy1452 33 PVEESDINKLKQFIEKY 49 (268)
Q Consensus 33 ~~~~~~l~~l~~~l~~a 49 (268)
++...++..|++++.++
T Consensus 504 dis~e~~~~L~~~~~~~ 520 (1627)
T PRK14715 504 DVSKEEIELLRKWLLGG 520 (1627)
T ss_pred cCCHHHHHHHHHHHHcC
Confidence 35566788888888765
No 186
>PRK12474 hypothetical protein; Provisional
Probab=34.57 E-value=50 Score=32.22 Aligned_cols=28 Identities=7% Similarity=0.178 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy1452 34 VEESDINKLKQFIEKYNKILVVTGAGIS 61 (268)
Q Consensus 34 ~~~~~l~~l~~~l~~a~~ivi~tGAGiS 61 (268)
.....+++++++|.+|++-||+.|.|+.
T Consensus 186 ~~~~~i~~~~~~L~~A~rPvil~G~g~~ 213 (518)
T PRK12474 186 VAAETVERIAALLRNGKKSALLLRGSAL 213 (518)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEECCccc
Confidence 4567899999999999999999999985
No 187
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=34.50 E-value=36 Score=34.07 Aligned_cols=21 Identities=14% Similarity=0.203 Sum_probs=17.5
Q ss_pred HHHHHhhhCCEEEEEcccccc
Q psy1452 240 KIDHLVRSCDGVLVLGSSLTV 260 (268)
Q Consensus 240 ~~~~~~~~~DlllviGTSl~V 260 (268)
.+.+.+.+||+||++||+|..
T Consensus 290 ~~~~~l~~aDlvL~lG~~l~~ 310 (612)
T PRK07789 290 AAVAALQRSDLLIALGARFDD 310 (612)
T ss_pred HHHHHHHhCCEEEEECCCCCc
Confidence 456788899999999999854
No 188
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=34.48 E-value=35 Score=33.60 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=17.3
Q ss_pred HHHHHhhhCCEEEEEcccccc
Q psy1452 240 KIDHLVRSCDGVLVLGSSLTV 260 (268)
Q Consensus 240 ~~~~~~~~~DlllviGTSl~V 260 (268)
.+.+.+++||+||++|+++..
T Consensus 252 ~~~~~l~~aDlvl~lG~~~~~ 272 (549)
T PRK06457 252 PSIEAMDKADLLIMLGTSFPY 272 (549)
T ss_pred HHHHHHHhCCEEEEECCCCCh
Confidence 345678899999999999864
No 189
>PRK11269 glyoxylate carboligase; Provisional
Probab=34.30 E-value=51 Score=32.77 Aligned_cols=27 Identities=22% Similarity=0.478 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy1452 35 EESDINKLKQFIEKYNKILVVTGAGIS 61 (268)
Q Consensus 35 ~~~~l~~l~~~l~~a~~ivi~tGAGiS 61 (268)
....+++++++|.+|++.+|++|.|+.
T Consensus 189 ~~~~i~~~~~~L~~AkrPvil~G~g~~ 215 (591)
T PRK11269 189 TRAQIEKALEMLNAAERPLIVAGGGVI 215 (591)
T ss_pred CHHHHHHHHHHHHhCCCcEEEECCCCc
Confidence 557899999999999999999999985
No 190
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=34.25 E-value=43 Score=33.08 Aligned_cols=47 Identities=21% Similarity=0.312 Sum_probs=27.6
Q ss_pred hcCCCCCCCCCCCeecccEEEeCCCCChHHHHHHHHHhhhCCEEEEEccccc
Q psy1452 208 SKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLT 259 (268)
Q Consensus 208 ~~~~iP~Cp~Cgg~lrP~Vv~fgE~~~~~~~~~~~~~~~~~DlllviGTSl~ 259 (268)
+...+|.+....|. -.|.|.+|-..=......+++||++|++|+++.
T Consensus 238 e~l~iPV~tt~~gk-----g~~~e~hpl~~G~~~~~~l~~aDlvl~lG~~~~ 284 (569)
T PRK09259 238 EKTGIPFLPMSMAK-----GLLPDTHPQSAAAARSLALANADVVLLVGARLN 284 (569)
T ss_pred HHHCCCEEeccccc-----ccCCCCChhhhhHHHHHHHhcCCEEEEeCCCCc
Confidence 33456666444332 135565553211223456889999999999984
No 191
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=34.24 E-value=46 Score=28.10 Aligned_cols=19 Identities=11% Similarity=0.420 Sum_probs=14.1
Q ss_pred eecccEEEeCCC---CChHHHH
Q psy1452 221 DLKPDIVFFGDN---IPRHRME 239 (268)
Q Consensus 221 ~lrP~Vv~fgE~---~~~~~~~ 239 (268)
.|+|+|++|+|+ +++++-.
T Consensus 157 mmkpqvllfdeptaaldpeita 178 (242)
T COG4161 157 MMEPQVLLFDEPTAALDPEITA 178 (242)
T ss_pred hcCCcEEeecCcccccCHHHHH
Confidence 589999999997 4554333
No 192
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=34.16 E-value=45 Score=33.15 Aligned_cols=28 Identities=18% Similarity=0.307 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHHHhCCcEEEEeCccccc
Q psy1452 35 EESDINKLKQFIEKYNKILVVTGAGIST 62 (268)
Q Consensus 35 ~~~~l~~l~~~l~~a~~ivi~tGAGiS~ 62 (268)
..+.+++++++|++|++.||++|.|+..
T Consensus 207 ~~~~i~~~~~~L~~AkrPvil~G~g~~~ 234 (587)
T PRK06965 207 HSGQIRKAVSLLLSAKRPYIYTGGGVIL 234 (587)
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCccc
Confidence 4678999999999999999999999963
No 193
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=33.87 E-value=36 Score=33.66 Aligned_cols=20 Identities=15% Similarity=0.248 Sum_probs=17.0
Q ss_pred HHHHHhhhCCEEEEEccccc
Q psy1452 240 KIDHLVRSCDGVLVLGSSLT 259 (268)
Q Consensus 240 ~~~~~~~~~DlllviGTSl~ 259 (268)
.+.+.+.+||++|+||++|.
T Consensus 269 ~~~~~~~~aD~vl~lG~~l~ 288 (566)
T PRK07282 269 AANIAMTEADFMINIGSRFD 288 (566)
T ss_pred HHHHHHHhCCEEEEECCCCC
Confidence 45568889999999999985
No 194
>PF01286 XPA_N: XPA protein N-terminal; InterPro: IPR022652 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. Skin cells of individual's with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-A is the most severe form of the disease and is due to defects in a 30 kDa nuclear protein called XPA (or XPAC) []. The sequence of the XPA protein is conserved from higher eukaryotes [] to yeast (gene RAD14) []. XPA is a hydrophilic protein of 247 to 296 amino-acid residues which has a C4-type zinc finger motif in its central section. This entry contains the zinc-finger containing region in the XPA protein. It is found N-terminal to PF05181 from PFAM ; PDB: 1D4U_A 1XPA_A.
Probab=33.83 E-value=24 Score=21.36 Aligned_cols=13 Identities=31% Similarity=1.109 Sum_probs=6.6
Q ss_pred hhcCCCCCCCCCC
Q psy1452 207 ISKFHVPQCPHCH 219 (268)
Q Consensus 207 ~~~~~iP~Cp~Cg 219 (268)
.+.+..+.|.+|.
T Consensus 19 ~~~F~~~VCD~CR 31 (34)
T PF01286_consen 19 LNNFDLPVCDKCR 31 (34)
T ss_dssp CCCTS-S--TTT-
T ss_pred HHhCCcccccccc
Confidence 3556789999995
No 195
>PRK08611 pyruvate oxidase; Provisional
Probab=33.76 E-value=36 Score=33.74 Aligned_cols=20 Identities=10% Similarity=0.272 Sum_probs=16.6
Q ss_pred HHHHHhhhCCEEEEEccccc
Q psy1452 240 KIDHLVRSCDGVLVLGSSLT 259 (268)
Q Consensus 240 ~~~~~~~~~DlllviGTSl~ 259 (268)
.+.+.++++|+||++|+++.
T Consensus 260 ~a~~~l~~aDlvl~iG~~~~ 279 (576)
T PRK08611 260 PAYEAMQEADLLIMVGTNYP 279 (576)
T ss_pred HHHHHHHhCCEEEEeCCCCC
Confidence 34567889999999999984
No 196
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=33.70 E-value=36 Score=33.44 Aligned_cols=20 Identities=20% Similarity=0.514 Sum_probs=16.7
Q ss_pred HHHHHhhhCCEEEEEccccc
Q psy1452 240 KIDHLVRSCDGVLVLGSSLT 259 (268)
Q Consensus 240 ~~~~~~~~~DlllviGTSl~ 259 (268)
.+.+.+++||+||++|+++.
T Consensus 255 ~~~~~l~~aD~vl~lG~~~~ 274 (548)
T PRK08978 255 AANLAVQECDLLIAVGARFD 274 (548)
T ss_pred HHHHHHHhCCEEEEEcCCCC
Confidence 45567889999999999874
No 197
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=33.68 E-value=54 Score=32.30 Aligned_cols=28 Identities=18% Similarity=0.345 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy1452 34 VEESDINKLKQFIEKYNKILVVTGAGIS 61 (268)
Q Consensus 34 ~~~~~l~~l~~~l~~a~~ivi~tGAGiS 61 (268)
+....+++++++|.+|++.+|++|.|..
T Consensus 189 ~~~~~i~~~~~~L~~A~rPvi~~G~g~~ 216 (557)
T PRK08199 189 PGAADLARLAELLARAERPLVILGGSGW 216 (557)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECCCcC
Confidence 4457899999999999999999999974
No 198
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=33.59 E-value=24 Score=21.85 Aligned_cols=14 Identities=36% Similarity=1.004 Sum_probs=10.1
Q ss_pred CCCCCCCeecccEE
Q psy1452 214 QCPHCHGDLKPDIV 227 (268)
Q Consensus 214 ~Cp~Cgg~lrP~Vv 227 (268)
.||+|+..|.+-.+
T Consensus 1 ~CP~C~~~l~~~~~ 14 (41)
T PF13453_consen 1 KCPRCGTELEPVRL 14 (41)
T ss_pred CcCCCCcccceEEE
Confidence 48899887775544
No 199
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=33.48 E-value=49 Score=33.06 Aligned_cols=27 Identities=15% Similarity=0.338 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy1452 35 EESDINKLKQFIEKYNKILVVTGAGIS 61 (268)
Q Consensus 35 ~~~~l~~l~~~l~~a~~ivi~tGAGiS 61 (268)
..+.+++++++|.+|++.+|++|.|+.
T Consensus 217 ~~~~i~~~~~~L~~AkrPlIl~G~g~~ 243 (612)
T PRK07789 217 HGKQIREAAKLIAAARRPVLYVGGGVI 243 (612)
T ss_pred CHHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 467799999999999999999999995
No 200
>PRK08611 pyruvate oxidase; Provisional
Probab=33.44 E-value=55 Score=32.43 Aligned_cols=28 Identities=29% Similarity=0.471 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy1452 34 VEESDINKLKQFIEKYNKILVVTGAGIS 61 (268)
Q Consensus 34 ~~~~~l~~l~~~l~~a~~ivi~tGAGiS 61 (268)
...+.+++++++|++|++.||++|.|+.
T Consensus 188 ~~~~~i~~~~~~L~~AkrPvil~G~g~~ 215 (576)
T PRK08611 188 PKPKDIKKAAKLINKAKKPVILAGLGAK 215 (576)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEECcCcc
Confidence 3456899999999999999999999985
No 201
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=33.41 E-value=37 Score=33.65 Aligned_cols=23 Identities=9% Similarity=0.150 Sum_probs=18.2
Q ss_pred HHHHHHhhhCCEEEEEccccccc
Q psy1452 239 EKIDHLVRSCDGVLVLGSSLTVS 261 (268)
Q Consensus 239 ~~~~~~~~~~DlllviGTSl~V~ 261 (268)
..+.+.+.+||++|+||+++...
T Consensus 264 ~~~~~~~~~aD~vl~vG~~~~~~ 286 (572)
T PRK08979 264 YEANMAMHNADLIFGIGVRFDDR 286 (572)
T ss_pred HHHHHHHHhCCEEEEEcCCCCcc
Confidence 34566788999999999998543
No 202
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=33.40 E-value=30 Score=23.67 Aligned_cols=18 Identities=22% Similarity=0.486 Sum_probs=12.1
Q ss_pred EEecccccceeeCCCCcc
Q psy1452 153 IEMHGTAFRVMCLGCDYE 170 (268)
Q Consensus 153 ~elHG~~~~~~C~~C~~~ 170 (268)
+...|....+.|.+|++.
T Consensus 17 i~~~~~~~~F~CPnCG~~ 34 (59)
T PRK14890 17 IAPREKAVKFLCPNCGEV 34 (59)
T ss_pred ccCCCccCEeeCCCCCCe
Confidence 334455677888888876
No 203
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=33.34 E-value=45 Score=27.44 Aligned_cols=30 Identities=30% Similarity=0.433 Sum_probs=23.4
Q ss_pred CCCHHHHHHHHHHHHhCCcEEEEeCcccccc
Q psy1452 33 PVEESDINKLKQFIEKYNKILVVTGAGISTE 63 (268)
Q Consensus 33 ~~~~~~l~~l~~~l~~a~~ivi~tGAGiS~~ 63 (268)
....+.++++++.|.+|++ |++.|.|-|..
T Consensus 17 ~l~~~~l~~~~~~i~~a~~-I~i~G~G~S~~ 46 (179)
T cd05005 17 KIDEEELDKLISAILNAKR-IFVYGAGRSGL 46 (179)
T ss_pred hcCHHHHHHHHHHHHhCCe-EEEEecChhHH
Confidence 3557889999999999976 56678887743
No 204
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=33.32 E-value=48 Score=33.07 Aligned_cols=27 Identities=11% Similarity=0.393 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy1452 35 EESDINKLKQFIEKYNKILVVTGAGIS 61 (268)
Q Consensus 35 ~~~~l~~l~~~l~~a~~ivi~tGAGiS 61 (268)
....+++++++|.+|++.+|++|.|+.
T Consensus 198 ~~~~l~~a~~~L~~A~rPvil~G~g~~ 224 (595)
T PRK09107 198 DAEAITEAVELLANAKRPVIYSGGGVI 224 (595)
T ss_pred CHHHHHHHHHHHHhCCCcEEEECCccc
Confidence 456899999999999999999999975
No 205
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=33.13 E-value=54 Score=32.25 Aligned_cols=25 Identities=24% Similarity=0.493 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhCCcEEEEeCcccc
Q psy1452 37 SDINKLKQFIEKYNKILVVTGAGIS 61 (268)
Q Consensus 37 ~~l~~l~~~l~~a~~ivi~tGAGiS 61 (268)
..++.++++|++|++.+|++|.|..
T Consensus 183 ~~i~~~~~~L~~AkrPvii~G~g~~ 207 (549)
T PRK06457 183 IDFSRAKELIKESEKPVLLIGGGTR 207 (549)
T ss_pred HHHHHHHHHHHcCCCcEEEECcchh
Confidence 5799999999999999999999974
No 206
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=33.13 E-value=37 Score=33.83 Aligned_cols=21 Identities=19% Similarity=0.472 Sum_probs=17.2
Q ss_pred HHHHHhhhCCEEEEEcccccc
Q psy1452 240 KIDHLVRSCDGVLVLGSSLTV 260 (268)
Q Consensus 240 ~~~~~~~~~DlllviGTSl~V 260 (268)
.+.+.+++||+||+||+++..
T Consensus 273 ~~~~~l~~aDlvL~lG~~~~~ 293 (595)
T PRK09107 273 EANMAMHDCDVMLCVGARFDD 293 (595)
T ss_pred HHHHHHHhCCEEEEECCCCCc
Confidence 355678899999999999853
No 207
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=33.00 E-value=38 Score=33.66 Aligned_cols=21 Identities=24% Similarity=0.483 Sum_probs=17.0
Q ss_pred HHHHhhhCCEEEEEccccccc
Q psy1452 241 IDHLVRSCDGVLVLGSSLTVS 261 (268)
Q Consensus 241 ~~~~~~~~DlllviGTSl~V~ 261 (268)
+.+.+.+||++|++|+++.-.
T Consensus 277 ~~~~l~~aDlvL~lG~~~~~~ 297 (585)
T CHL00099 277 ANFAVSECDLLIALGARFDDR 297 (585)
T ss_pred HHHHHHhCCEEEEECCCCccc
Confidence 445778999999999998643
No 208
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=32.96 E-value=37 Score=33.73 Aligned_cols=22 Identities=14% Similarity=0.452 Sum_probs=17.6
Q ss_pred HHHHHhhhCCEEEEEccccccc
Q psy1452 240 KIDHLVRSCDGVLVLGSSLTVS 261 (268)
Q Consensus 240 ~~~~~~~~~DlllviGTSl~V~ 261 (268)
.+.+.+++||+||+||+++...
T Consensus 280 ~a~~~~~~aDlvl~lG~~~~~~ 301 (587)
T PRK06965 280 EANMAMQHCDVLIAIGARFDDR 301 (587)
T ss_pred HHHHHHHhCCEEEEECCCCccc
Confidence 3556788999999999998543
No 209
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=32.82 E-value=38 Score=33.39 Aligned_cols=20 Identities=10% Similarity=0.308 Sum_probs=16.8
Q ss_pred HHHHHhhhCCEEEEEccccc
Q psy1452 240 KIDHLVRSCDGVLVLGSSLT 259 (268)
Q Consensus 240 ~~~~~~~~~DlllviGTSl~ 259 (268)
.+.+.+++||+||++|+++.
T Consensus 266 ~~~~~l~~aD~vl~lG~~~~ 285 (561)
T PRK06048 266 YANYAIQESDLIIAVGARFD 285 (561)
T ss_pred HHHHHHHhCCEEEEECCCCC
Confidence 34567889999999999985
No 210
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=32.82 E-value=42 Score=33.14 Aligned_cols=23 Identities=13% Similarity=0.206 Sum_probs=18.2
Q ss_pred HHHHHhhhCCEEEEEcccccccc
Q psy1452 240 KIDHLVRSCDGVLVLGSSLTVSF 262 (268)
Q Consensus 240 ~~~~~~~~~DlllviGTSl~V~p 262 (268)
.+.+.+++||+||+||+++....
T Consensus 265 ~~~~~l~~aDlvl~lG~~~~~~~ 287 (574)
T PRK06882 265 EANNAMHESDLILGIGVRFDDRT 287 (574)
T ss_pred HHHHHHHhCCEEEEECCCCCccc
Confidence 35567889999999999985543
No 211
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=32.79 E-value=49 Score=27.12 Aligned_cols=28 Identities=36% Similarity=0.580 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEeCccccc
Q psy1452 34 VEESDINKLKQFIEKYNKILVVTGAGIST 62 (268)
Q Consensus 34 ~~~~~l~~l~~~l~~a~~ivi~tGAGiS~ 62 (268)
...++++++.+.|.++++ |++.|.|.|.
T Consensus 15 l~~~~~~~~~~~l~~a~~-I~i~G~G~S~ 42 (179)
T TIGR03127 15 IDEEELDKLADKIIKAKR-IFVAGAGRSG 42 (179)
T ss_pred CCHHHHHHHHHHHHhCCE-EEEEecCHHH
Confidence 456789999999999886 6677888764
No 212
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=32.78 E-value=19 Score=34.36 Aligned_cols=15 Identities=40% Similarity=0.979 Sum_probs=12.2
Q ss_pred CCCCCCCCCCeeccc
Q psy1452 211 HVPQCPHCHGDLKPD 225 (268)
Q Consensus 211 ~iP~Cp~Cgg~lrP~ 225 (268)
.-|+||.||+.|+-.
T Consensus 349 ~~p~Cp~Cg~~m~S~ 363 (421)
T COG1571 349 VNPVCPRCGGRMKSA 363 (421)
T ss_pred cCCCCCccCCchhhc
Confidence 369999999988753
No 213
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=32.76 E-value=48 Score=32.77 Aligned_cols=28 Identities=25% Similarity=0.478 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHhCCcEEEEeCccccc
Q psy1452 35 EESDINKLKQFIEKYNKILVVTGAGIST 62 (268)
Q Consensus 35 ~~~~l~~l~~~l~~a~~ivi~tGAGiS~ 62 (268)
....+++++++|.+|++.+|++|.|+..
T Consensus 196 ~~~~i~~~~~~L~~A~rPvil~G~g~~~ 223 (566)
T PRK07282 196 NDMQIKKILKQLSKAKKPVILAGGGINY 223 (566)
T ss_pred CHHHHHHHHHHHHcCCCcEEEECCCcCc
Confidence 4667999999999999999999999853
No 214
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=32.52 E-value=22 Score=26.45 Aligned_cols=14 Identities=36% Similarity=0.691 Sum_probs=11.9
Q ss_pred cEEEEeCccccccc
Q psy1452 51 KILVVTGAGISTES 64 (268)
Q Consensus 51 ~ivi~tGAGiS~~s 64 (268)
+|++.+|+|++++.
T Consensus 4 kILvvCgsG~~TS~ 17 (94)
T PRK10310 4 KIIVACGGAVATST 17 (94)
T ss_pred eEEEECCCchhHHH
Confidence 69999999998753
No 215
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=32.44 E-value=51 Score=32.66 Aligned_cols=29 Identities=17% Similarity=0.346 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEeCccccc
Q psy1452 34 VEESDINKLKQFIEKYNKILVVTGAGIST 62 (268)
Q Consensus 34 ~~~~~l~~l~~~l~~a~~ivi~tGAGiS~ 62 (268)
.....+++++++|.+|++.+|++|.|+..
T Consensus 199 ~~~~~~~~~~~~L~~A~rPvIl~G~g~~~ 227 (570)
T PRK06725 199 PDSMKLREVAKAISKAKRPLLYIGGGVIH 227 (570)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEECCCccc
Confidence 34568999999999999999999999853
No 216
>PRK09462 fur ferric uptake regulator; Provisional
Probab=32.31 E-value=57 Score=26.09 Aligned_cols=52 Identities=17% Similarity=0.223 Sum_probs=35.0
Q ss_pred CCCCCHHHHHHHHhHhcCCCcEEEeccCcchhhhhcCCceEEec--ccccceeeCCCCcccch
Q psy1452 113 SFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMH--GTAFRVMCLGCDYEIDR 173 (268)
Q Consensus 113 ~~~P~~~H~~L~~L~~~~~~~~iiTqNiD~L~~~aG~~~v~elH--G~~~~~~C~~C~~~~~~ 173 (268)
...+.-.|+.|..|.+.|.+..+-..|--. .|++. +.-.++.|..|++....
T Consensus 49 ~i~~aTVYR~L~~L~e~Gli~~~~~~~~~~---------~y~~~~~~~H~H~iC~~Cg~i~~i 102 (148)
T PRK09462 49 EIGLATVYRVLNQFDDAGIVTRHNFEGGKS---------VFELTQQHHHDHLICLDCGKVIEF 102 (148)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEcCCCcE---------EEEeCCCCCCCceEECCCCCEEEe
Confidence 445677899999999999887765554212 22321 22246899999987654
No 217
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=32.21 E-value=33 Score=34.01 Aligned_cols=29 Identities=17% Similarity=0.189 Sum_probs=22.5
Q ss_pred CCCCCCHHHHHHHHHHHHhCCcEEEEeCc
Q psy1452 30 KHKPVEESDINKLKQFIEKYNKILVVTGA 58 (268)
Q Consensus 30 ~~~~~~~~~l~~l~~~l~~a~~ivi~tGA 58 (268)
.+.|=.-+.+.-+++...++--+|++||-
T Consensus 71 tsGPGatN~~tgla~A~~d~~Pll~itGq 99 (550)
T COG0028 71 TSGPGATNLLTGLADAYMDSVPLLAITGQ 99 (550)
T ss_pred CCCCcHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 34455567888888888888899999983
No 218
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=32.07 E-value=58 Score=28.93 Aligned_cols=32 Identities=16% Similarity=0.363 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHHHHHHhCCcEEEEeCcccccc
Q psy1452 32 KPVEESDINKLKQFIEKYNKILVVTGAGISTE 63 (268)
Q Consensus 32 ~~~~~~~l~~l~~~l~~a~~ivi~tGAGiS~~ 63 (268)
++.....++.|+++++.++..+|+.|+|++.+
T Consensus 151 ~~~a~~g~~~L~~lv~~a~~~~Im~GgGV~~~ 182 (248)
T PRK11572 151 QQDAEQGLSLIMELIAASDGPIIMAGAGVRLS 182 (248)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEeCCCCCHH
Confidence 33456789999999998888779999999854
No 219
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.04 E-value=21 Score=25.90 Aligned_cols=10 Identities=40% Similarity=1.315 Sum_probs=8.1
Q ss_pred CCCCCCCCCC
Q psy1452 211 HVPQCPHCHG 220 (268)
Q Consensus 211 ~iP~Cp~Cgg 220 (268)
.+-.||+|+|
T Consensus 20 EiD~CPrCrG 29 (88)
T COG3809 20 EIDYCPRCRG 29 (88)
T ss_pred eeeeCCcccc
Confidence 4678999986
No 220
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=32.01 E-value=49 Score=32.76 Aligned_cols=27 Identities=19% Similarity=0.208 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy1452 35 EESDINKLKQFIEKYNKILVVTGAGIS 61 (268)
Q Consensus 35 ~~~~l~~l~~~l~~a~~ivi~tGAGiS 61 (268)
....+++++++|.+|++.+|++|.|+.
T Consensus 192 ~~~~i~~~~~~L~~A~rPvil~G~g~~ 218 (572)
T PRK08979 192 HKGQIKRGLQALLAAKKPVLYVGGGAI 218 (572)
T ss_pred CHHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 467899999999999999999999985
No 221
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=31.89 E-value=40 Score=33.24 Aligned_cols=21 Identities=19% Similarity=0.415 Sum_probs=17.2
Q ss_pred HHHHHhhhCCEEEEEcccccc
Q psy1452 240 KIDHLVRSCDGVLVLGSSLTV 260 (268)
Q Consensus 240 ~~~~~~~~~DlllviGTSl~V 260 (268)
.+.+.+.+||+||+||++|..
T Consensus 262 ~~~~~l~~aD~vl~lG~~l~~ 282 (563)
T PRK08527 262 AANMAMSECDLLISLGARFDD 282 (563)
T ss_pred HHHHHHHhCCEEEEeCCCCCc
Confidence 345678899999999999854
No 222
>PF04574 DUF592: Protein of unknown function (DUF592); InterPro: IPR007654 This N-terminal region is found in SIR2 proteins (IPR003000 from INTERPRO) and its homologues. Its function is uncharacterised.; GO: 0008270 zinc ion binding, 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, 0017136 NAD-dependent histone deacetylase activity, 0051287 NAD binding, 0006342 chromatin silencing, 0006355 regulation of transcription, DNA-dependent, 0006476 protein deacetylation; PDB: 2HJH_B.
Probab=31.76 E-value=49 Score=27.06 Aligned_cols=19 Identities=32% Similarity=0.550 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhCCcEEEEe
Q psy1452 38 DINKLKQFIEKYNKILVVT 56 (268)
Q Consensus 38 ~l~~l~~~l~~a~~ivi~t 56 (268)
.++.+.+.|++|++|+|+|
T Consensus 135 Tid~~v~~lk~akkIlVlT 153 (153)
T PF04574_consen 135 TIDDVVDLLKSAKKILVLT 153 (153)
T ss_dssp SHHHHHHHHHH-SSEEEEE
T ss_pred cHHHHHHHHHhcCceEEeC
Confidence 5789999999999999987
No 223
>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis]
Probab=31.75 E-value=17 Score=30.86 Aligned_cols=11 Identities=18% Similarity=0.495 Sum_probs=8.9
Q ss_pred ceeeCCCCccc
Q psy1452 161 RVMCLGCDYEI 171 (268)
Q Consensus 161 ~~~C~~C~~~~ 171 (268)
..+|++|+...
T Consensus 149 ~A~CsrC~~~L 159 (188)
T COG1096 149 YARCSRCRAPL 159 (188)
T ss_pred EEEccCCCcce
Confidence 57899999865
No 224
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=31.74 E-value=41 Score=33.53 Aligned_cols=21 Identities=14% Similarity=0.047 Sum_probs=17.0
Q ss_pred HHHHHhhhCCEEEEEcccccc
Q psy1452 240 KIDHLVRSCDGVLVLGSSLTV 260 (268)
Q Consensus 240 ~~~~~~~~~DlllviGTSl~V 260 (268)
.+.+.+++||+||++|++|.-
T Consensus 262 ~a~~~l~~aD~iL~lG~~l~~ 282 (588)
T TIGR01504 262 YGNATLLESDFVFGIGNRWAN 282 (588)
T ss_pred HHHHHHHhCCEEEEECCCCCc
Confidence 345678899999999999853
No 225
>PLN02573 pyruvate decarboxylase
Probab=31.66 E-value=40 Score=33.48 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=16.8
Q ss_pred HHHHHhhhCCEEEEEcccccc
Q psy1452 240 KIDHLVRSCDGVLVLGSSLTV 260 (268)
Q Consensus 240 ~~~~~~~~~DlllviGTSl~V 260 (268)
.+.+.+++||+||++|++|.-
T Consensus 284 ~~~~~~~~aDlvl~lG~~l~~ 304 (578)
T PLN02573 284 FCAEIVESADAYLFAGPIFND 304 (578)
T ss_pred HHHHHHHhCCEEEEECCccCC
Confidence 345677899999999998853
No 226
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=31.47 E-value=69 Score=25.77 Aligned_cols=56 Identities=13% Similarity=0.135 Sum_probs=36.8
Q ss_pred CCCCCCHHHHHHHHhHhcCCCcEEEeccCcchhhhhcCCceEEecccccceeeCCCCcccchh
Q psy1452 112 SSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEIDRH 174 (268)
Q Consensus 112 ~~~~P~~~H~~L~~L~~~~~~~~iiTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~ 174 (268)
....+...|+.|..|.+.|.+..+-..|--..++... |+.-..+.|..||+..+..
T Consensus 51 p~islaTVYr~L~~l~e~Glv~~~~~~~~~~~y~~~~-------~~~H~HliC~~CG~v~e~~ 106 (145)
T COG0735 51 PGISLATVYRTLKLLEEAGLVHRLEFEGGKTRYELNS-------EPHHHHLICLDCGKVIEFE 106 (145)
T ss_pred CCCCHhHHHHHHHHHHHCCCEEEEEeCCCEEEEecCC-------CCcccEEEecCCCCEEEec
Confidence 3556778899999999988776655444222222221 1246788999999876543
No 227
>PF04475 DUF555: Protein of unknown function (DUF555); InterPro: IPR007564 This is a family of uncharacterised, hypothetical archaeal proteins.
Probab=31.42 E-value=33 Score=26.05 Aligned_cols=21 Identities=24% Similarity=0.534 Sum_probs=16.9
Q ss_pred CCCCCCCCCeecccEEEeCCC
Q psy1452 212 VPQCPHCHGDLKPDIVFFGDN 232 (268)
Q Consensus 212 iP~Cp~Cgg~lrP~Vv~fgE~ 232 (268)
.-.||.||.++.|-.+.=+..
T Consensus 47 ~~~cP~Cge~~~~a~vva~ta 67 (102)
T PF04475_consen 47 DTICPKCGEELDSAFVVADTA 67 (102)
T ss_pred cccCCCCCCccCceEEEeccc
Confidence 568999999999988765554
No 228
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=31.31 E-value=55 Score=26.73 Aligned_cols=21 Identities=19% Similarity=0.475 Sum_probs=16.2
Q ss_pred CCCCCCCCC------CeecccEEEeCC
Q psy1452 211 HVPQCPHCH------GDLKPDIVFFGD 231 (268)
Q Consensus 211 ~iP~Cp~Cg------g~lrP~Vv~fgE 231 (268)
.+-.||.|| .+|-|+|.-=+.
T Consensus 31 glv~CP~Cgs~~V~K~lmAP~v~~~~~ 57 (148)
T PF06676_consen 31 GLVSCPVCGSTEVSKALMAPAVATSRS 57 (148)
T ss_pred CCccCCCCCCCeEeeecCCCeecCCCC
Confidence 467899998 578899887544
No 229
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=31.21 E-value=29 Score=26.90 Aligned_cols=13 Identities=38% Similarity=0.802 Sum_probs=9.7
Q ss_pred CCCCCCCCeeccc
Q psy1452 213 PQCPHCHGDLKPD 225 (268)
Q Consensus 213 P~Cp~Cgg~lrP~ 225 (268)
-.|.+|+.+|--+
T Consensus 86 D~CM~C~~pLTLd 98 (114)
T PF11023_consen 86 DACMHCKEPLTLD 98 (114)
T ss_pred hccCcCCCcCccC
Confidence 4799999886543
No 230
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=31.17 E-value=42 Score=33.26 Aligned_cols=20 Identities=20% Similarity=0.291 Sum_probs=16.5
Q ss_pred HHHHHhhhCCEEEEEccccc
Q psy1452 240 KIDHLVRSCDGVLVLGSSLT 259 (268)
Q Consensus 240 ~~~~~~~~~DlllviGTSl~ 259 (268)
.+.+.+++||++|++|+++.
T Consensus 257 ~~~~~l~~aDlvl~vG~~~~ 276 (575)
T TIGR02720 257 PANEALFQADLVLFVGNNYP 276 (575)
T ss_pred HHHHHHHhCCEEEEeCCCCC
Confidence 34567889999999999874
No 231
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=31.11 E-value=18 Score=30.02 Aligned_cols=18 Identities=28% Similarity=0.064 Sum_probs=14.9
Q ss_pred HHHHh---hhCCEEEEEcccc
Q psy1452 241 IDHLV---RSCDGVLVLGSSL 258 (268)
Q Consensus 241 ~~~~~---~~~DlllviGTSl 258 (268)
+.+.+ ..+|++|++|+..
T Consensus 91 ~~e~~~g~g~~DlvlfvG~~~ 111 (162)
T TIGR00315 91 SWEGFDGEGNYDLVLFLGIIY 111 (162)
T ss_pred hhhhccCCCCcCEEEEeCCcc
Confidence 45566 7899999999987
No 232
>PRK12286 rpmF 50S ribosomal protein L32; Reviewed
Probab=30.99 E-value=31 Score=23.35 Aligned_cols=18 Identities=28% Similarity=0.615 Sum_probs=15.4
Q ss_pred CCCCCCCCCCeecccEEE
Q psy1452 211 HVPQCPHCHGDLKPDIVF 228 (268)
Q Consensus 211 ~iP~Cp~Cgg~lrP~Vv~ 228 (268)
.+-.||.||...+|+.+-
T Consensus 26 ~l~~C~~CG~~~~~H~vC 43 (57)
T PRK12286 26 GLVECPNCGEPKLPHRVC 43 (57)
T ss_pred cceECCCCCCccCCeEEC
Confidence 366799999999999886
No 233
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=30.92 E-value=47 Score=32.81 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=17.4
Q ss_pred HHHHhhhCCEEEEEcccccccc
Q psy1452 241 IDHLVRSCDGVLVLGSSLTVSF 262 (268)
Q Consensus 241 ~~~~~~~~DlllviGTSl~V~p 262 (268)
+...+.+||+||++|+++.-.+
T Consensus 267 ~~~~~~~aDlvl~lG~~~~~~~ 288 (572)
T PRK06456 267 ASMAALESDAMLVVGARFSDRT 288 (572)
T ss_pred HHHHHHhCCEEEEECCCCchhh
Confidence 4567789999999999985443
No 234
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=30.81 E-value=28 Score=34.12 Aligned_cols=16 Identities=25% Similarity=0.775 Sum_probs=10.3
Q ss_pred cccccceeeCCCCccc
Q psy1452 156 HGTAFRVMCLGCDYEI 171 (268)
Q Consensus 156 HG~~~~~~C~~C~~~~ 171 (268)
-|-.....|..|+...
T Consensus 208 rGya~~~~C~~Cg~~~ 223 (505)
T TIGR00595 208 RGYSKNLLCRSCGYIL 223 (505)
T ss_pred CcCCCeeEhhhCcCcc
Confidence 4555566777777654
No 235
>PF12387 Peptidase_C74: Pestivirus NS2 peptidase; InterPro: IPR022120 The pestivirus NS2 peptidase is responsible for single cleavage between NS2 and NS3 of the Bovine viral diarrhea virus 1 polyprotein, a cleavage that is correlated with cytopathogenicity []. The peptidase is activated by its interaction with 'J-domain protein interacting with viral protein' - Jiv. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0004252 serine-type endopeptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0017111 nucleoside-triphosphatase activity, 0070008 serine-type exopeptidase activity
Probab=30.78 E-value=30 Score=28.97 Aligned_cols=35 Identities=14% Similarity=0.083 Sum_probs=24.2
Q ss_pred CCCCCHHHHHHHHhHhc----------C-CCcEEEeccCcchhhhh
Q psy1452 113 SFQPNANHYALKQMEDN----------E-KLSYIITQNVDGLHYKA 147 (268)
Q Consensus 113 ~~~P~~~H~~L~~L~~~----------~-~~~~iiTqNiD~L~~~a 147 (268)
.--.|..-+.+|.|.+. | |-+++++.-+-+|.-|-
T Consensus 80 aGgtN~iSR~iAaliElNW~~d~eE~kGlKKFflLS~R~r~LiiKH 125 (200)
T PF12387_consen 80 AGGTNFISRLIAALIELNWAMDEEESKGLKKFFLLSGRVRNLIIKH 125 (200)
T ss_pred cCcchHHHHHHHHHHHhhccccchhhcCcceeeeehhHHHHHHHHh
Confidence 34566778888888742 2 45678888888887663
No 236
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=30.71 E-value=61 Score=31.98 Aligned_cols=28 Identities=18% Similarity=0.376 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHhCCcEEEEeCccccc
Q psy1452 35 EESDINKLKQFIEKYNKILVVTGAGIST 62 (268)
Q Consensus 35 ~~~~l~~l~~~l~~a~~ivi~tGAGiS~ 62 (268)
....+++++++|.+|++.+|++|.|+..
T Consensus 197 ~~~~i~~~~~~L~~AkrPvIl~G~g~~~ 224 (564)
T PRK08155 197 DEESIRDAAAMINAAKRPVLYLGGGVIN 224 (564)
T ss_pred CHHHHHHHHHHHHhCCCCEEEECCCccc
Confidence 3567999999999999999999999853
No 237
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=30.35 E-value=83 Score=31.24 Aligned_cols=28 Identities=21% Similarity=0.478 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy1452 34 VEESDINKLKQFIEKYNKILVVTGAGIS 61 (268)
Q Consensus 34 ~~~~~l~~l~~~l~~a~~ivi~tGAGiS 61 (268)
+....+++++++|++|++.+|++|.|+.
T Consensus 186 ~~~~~i~~a~~~L~~A~rPvii~G~g~~ 213 (578)
T PRK06546 186 PDPAEVRALADAINEAKKVTLFAGAGVR 213 (578)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEECcchH
Confidence 3457899999999999999999999984
No 238
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=30.33 E-value=50 Score=32.67 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=18.2
Q ss_pred HHHHHhhhCCEEEEEccccccc
Q psy1452 240 KIDHLVRSCDGVLVLGSSLTVS 261 (268)
Q Consensus 240 ~~~~~~~~~DlllviGTSl~V~ 261 (268)
.+.+.++++|++|++|+.+...
T Consensus 277 ~~~~~l~~aDlvl~lG~~~~~~ 298 (578)
T PRK06112 277 HLRDLVREADVVLLVGTRTNQN 298 (578)
T ss_pred HHHHHHHhCCEEEEECCCCCcc
Confidence 4667888999999999998643
No 239
>COG5349 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.30 E-value=19 Score=28.33 Aligned_cols=9 Identities=44% Similarity=0.988 Sum_probs=7.3
Q ss_pred CCCCCCCCC
Q psy1452 212 VPQCPHCHG 220 (268)
Q Consensus 212 iP~Cp~Cgg 220 (268)
.|+|..||-
T Consensus 40 ~p~C~aCG~ 48 (126)
T COG5349 40 VPACEACGL 48 (126)
T ss_pred Cchhhhccc
Confidence 688999973
No 240
>PRK05858 hypothetical protein; Provisional
Probab=30.21 E-value=70 Score=31.39 Aligned_cols=28 Identities=4% Similarity=0.264 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy1452 34 VEESDINKLKQFIEKYNKILVVTGAGIS 61 (268)
Q Consensus 34 ~~~~~l~~l~~~l~~a~~ivi~tGAGiS 61 (268)
...+.+++++++|.+|++.+|++|.|+.
T Consensus 188 ~~~~~i~~~~~~L~~AkrPvil~G~g~~ 215 (542)
T PRK05858 188 PDPDALARAAGLLAEAQRPVIMAGTDVW 215 (542)
T ss_pred CCHHHHHHHHHHHHhCCCcEEEECCCcc
Confidence 4567899999999999999999999985
No 241
>PF14419 SPOUT_MTase_2: AF2226-like SPOUT RNA Methylase fused to THUMP
Probab=30.03 E-value=46 Score=27.61 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCcccccccCCC
Q psy1452 36 ESDINKLKQFIEKYNKILVVTGAGISTESGIP 67 (268)
Q Consensus 36 ~~~l~~l~~~l~~a~~ivi~tGAGiS~~sGiP 67 (268)
.+--++|++.++.++.++|+.||- -|||
T Consensus 107 s~vk~~L~~~~r~~~eV~v~iGSR----eGiP 134 (173)
T PF14419_consen 107 SEVKDKLAEDLRYAKEVVVFIGSR----EGIP 134 (173)
T ss_pred HHHHHHHHHHHhhCcEEEEEEEcc----cCCC
Confidence 455688999999999999999987 5777
No 242
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=29.87 E-value=58 Score=32.11 Aligned_cols=28 Identities=18% Similarity=0.442 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHhCCcEEEEeCccccc
Q psy1452 35 EESDINKLKQFIEKYNKILVVTGAGIST 62 (268)
Q Consensus 35 ~~~~l~~l~~~l~~a~~ivi~tGAGiS~ 62 (268)
..+.+++++++|.+|++.+|++|.|...
T Consensus 193 ~~~~i~~~a~~L~~AkrPvil~G~g~~~ 220 (561)
T PRK06048 193 NPQQIKRAAELIMKAERPIIYAGGGVIS 220 (561)
T ss_pred CHHHHHHHHHHHHhCCCCEEEECCCccc
Confidence 4568999999999999999999999863
No 243
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=29.60 E-value=52 Score=29.03 Aligned_cols=31 Identities=23% Similarity=0.384 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEeCcccccccC
Q psy1452 34 VEESDINKLKQFIEKYNKILVVTGAGISTESG 65 (268)
Q Consensus 34 ~~~~~l~~l~~~l~~a~~ivi~tGAGiS~~sG 65 (268)
.+.+++++++++|.+|++ |++.|.|.|...+
T Consensus 113 id~~~i~~~~~~i~~a~~-I~i~G~G~S~~~a 143 (284)
T PRK11302 113 LDPSAINRAVDLLTQAKK-ISFFGLGASAAVA 143 (284)
T ss_pred cCHHHHHHHHHHHHcCCe-EEEEEcchHHHHH
Confidence 445779999999999987 6778888876544
No 244
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=29.57 E-value=57 Score=32.19 Aligned_cols=28 Identities=25% Similarity=0.296 Sum_probs=25.2
Q ss_pred CHHHHHHHHHHHHhCCcEEEEeCccccc
Q psy1452 35 EESDINKLKQFIEKYNKILVVTGAGIST 62 (268)
Q Consensus 35 ~~~~l~~l~~~l~~a~~ivi~tGAGiS~ 62 (268)
....+++++++|.+|++.+|++|.|+..
T Consensus 189 ~~~~i~~~~~~L~~A~rPviv~G~g~~~ 216 (563)
T PRK08527 189 NSRQIKKAAEAIKEAKKPLFYLGGGAIL 216 (563)
T ss_pred CHHHHHHHHHHHHcCCCCEEEECCCccc
Confidence 4678999999999999999999999864
No 245
>cd04482 RPA2_OBF_like RPA2_OBF_like: A subgroup of uncharacterized archaeal OB folds with similarity to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle depende
Probab=29.41 E-value=26 Score=25.93 Aligned_cols=9 Identities=44% Similarity=1.261 Sum_probs=7.8
Q ss_pred CCCCCCCCC
Q psy1452 211 HVPQCPHCH 219 (268)
Q Consensus 211 ~iP~Cp~Cg 219 (268)
.-|+||.||
T Consensus 83 ~np~C~~C~ 91 (91)
T cd04482 83 ENPVCPKCG 91 (91)
T ss_pred cCCcCCCCC
Confidence 379999997
No 246
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=29.30 E-value=84 Score=31.04 Aligned_cols=27 Identities=22% Similarity=0.503 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy1452 35 EESDINKLKQFIEKYNKILVVTGAGIS 61 (268)
Q Consensus 35 ~~~~l~~l~~~l~~a~~ivi~tGAGiS 61 (268)
....+++++++|++|++.+|++|.|.+
T Consensus 187 ~~~~i~~~~~~L~~AkrPvii~G~g~~ 213 (574)
T PRK09124 187 AEEELRKLAALLNGSSNITLLCGSGCA 213 (574)
T ss_pred CHHHHHHHHHHHHcCCCCEEEECcChH
Confidence 457899999999999999999999985
No 247
>COG1885 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.28 E-value=35 Score=26.12 Aligned_cols=20 Identities=20% Similarity=0.559 Sum_probs=14.5
Q ss_pred CCCCCCCCCeecccEEEeCC
Q psy1452 212 VPQCPHCHGDLKPDIVFFGD 231 (268)
Q Consensus 212 iP~Cp~Cgg~lrP~Vv~fgE 231 (268)
.-.||+||..+.+-.+.-+.
T Consensus 49 ~t~CP~Cg~~~e~~fvva~~ 68 (115)
T COG1885 49 STSCPKCGEPFESAFVVANT 68 (115)
T ss_pred cccCCCCCCccceeEEEecc
Confidence 56899999888776654443
No 248
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=29.12 E-value=48 Score=32.94 Aligned_cols=21 Identities=14% Similarity=0.344 Sum_probs=17.1
Q ss_pred HHHHHhhhCCEEEEEcccccc
Q psy1452 240 KIDHLVRSCDGVLVLGSSLTV 260 (268)
Q Consensus 240 ~~~~~~~~~DlllviGTSl~V 260 (268)
.+.+.+++||+||+||+++..
T Consensus 258 ~~~~~l~~aDlvl~lG~~~~~ 278 (578)
T PRK06546 258 AAHEAMHEADLLILLGTDFPY 278 (578)
T ss_pred HHHHHHHhCCEEEEEcCCCCh
Confidence 455678899999999998753
No 249
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=29.09 E-value=60 Score=31.95 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=24.2
Q ss_pred CHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy1452 35 EESDINKLKQFIEKYNKILVVTGAGIS 61 (268)
Q Consensus 35 ~~~~l~~l~~~l~~a~~ivi~tGAGiS 61 (268)
....+++++++|.+|++.+|++|.|..
T Consensus 187 ~~~~i~~~~~~L~~AkrPvi~~G~g~~ 213 (558)
T TIGR00118 187 HPLQIKKAAELINLAKKPVILVGGGVI 213 (558)
T ss_pred CHHHHHHHHHHHHhCCCcEEEECCCcc
Confidence 456799999999999999999999985
No 250
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=29.09 E-value=25 Score=31.65 Aligned_cols=67 Identities=16% Similarity=0.172 Sum_probs=29.3
Q ss_pred ceEEeccc----ccceeeCCCCcccchhhHHHHHHhhCCchhhhcccCCCCCCc-ccchhhhhcCCCCCCCCCCCeeccc
Q psy1452 151 KVIEMHGT----AFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDV-EMSEETISKFHVPQCPHCHGDLKPD 225 (268)
Q Consensus 151 ~v~elHG~----~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~iP~Cp~Cgg~lrP~ 225 (268)
.+-.++|. ..+++|+-|+.++.... ..+|.+.... ...+ .+..+......+=.|..|++.+|
T Consensus 183 ~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R------~~Cp~Cg~~~-----~~~l~~~~~e~~~~~rve~C~~C~~YlK-- 249 (290)
T PF04216_consen 183 VLSVLRGGEREGKRYLHCSLCGTEWRFVR------IKCPYCGNTD-----HEKLEYFTVEGEPAYRVEVCESCGSYLK-- 249 (290)
T ss_dssp EEEEEE------EEEEEETTT--EEE--T------TS-TTT---S-----S-EEE--------SEEEEEETTTTEEEE--
T ss_pred ceEEEecCCCCccEEEEcCCCCCeeeecC------CCCcCCCCCC-----CcceeeEecCCCCcEEEEECCcccchHH--
Confidence 45555554 48899999999874322 1233322111 0000 01111112234668999999998
Q ss_pred EEEeCC
Q psy1452 226 IVFFGD 231 (268)
Q Consensus 226 Vv~fgE 231 (268)
+++.+
T Consensus 250 -~vd~~ 254 (290)
T PF04216_consen 250 -TVDRE 254 (290)
T ss_dssp -EEETT
T ss_pred -HHhhh
Confidence 55534
No 251
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=29.07 E-value=36 Score=32.58 Aligned_cols=18 Identities=28% Similarity=0.593 Sum_probs=13.1
Q ss_pred CCCCCCCCCeecccEEEe
Q psy1452 212 VPQCPHCHGDLKPDIVFF 229 (268)
Q Consensus 212 iP~Cp~Cgg~lrP~Vv~f 229 (268)
.++|+.||+.+....-.+
T Consensus 21 ~~~c~~cGl~lp~~~~~~ 38 (411)
T COG0498 21 QGLCPDCGLFLPAEYPYF 38 (411)
T ss_pred hCcCCcCCcccccccCcc
Confidence 578999998877655433
No 252
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=29.06 E-value=48 Score=32.82 Aligned_cols=20 Identities=35% Similarity=0.468 Sum_probs=17.0
Q ss_pred HHHHHhhhCCEEEEEccccc
Q psy1452 240 KIDHLVRSCDGVLVLGSSLT 259 (268)
Q Consensus 240 ~~~~~~~~~DlllviGTSl~ 259 (268)
.+.+.+++||++|++|+++.
T Consensus 255 ~~~~~l~~aDlil~lG~~~~ 274 (579)
T TIGR03457 255 AAMKLISDADVVLALGTRLG 274 (579)
T ss_pred HHHHHHHhCCEEEEECCCCc
Confidence 45677889999999999885
No 253
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=28.81 E-value=55 Score=32.21 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=17.4
Q ss_pred HHHHHhhhCCEEEEEccccccc
Q psy1452 240 KIDHLVRSCDGVLVLGSSLTVS 261 (268)
Q Consensus 240 ~~~~~~~~~DlllviGTSl~V~ 261 (268)
.+.+.+.+||+||++|+++.-.
T Consensus 263 ~~~~~l~~aDlvl~lG~~~~~~ 284 (557)
T PRK08199 263 ALAARIREADLVLAVGTRLGEV 284 (557)
T ss_pred HHHHHHHhCCEEEEeCCCCccc
Confidence 3456778999999999988543
No 254
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=28.72 E-value=64 Score=32.02 Aligned_cols=27 Identities=19% Similarity=0.434 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy1452 35 EESDINKLKQFIEKYNKILVVTGAGIS 61 (268)
Q Consensus 35 ~~~~l~~l~~~l~~a~~ivi~tGAGiS 61 (268)
....+++++++|.+|++.+|++|.|.-
T Consensus 189 ~~~~i~~~~~~L~~AkrPvil~G~g~~ 215 (586)
T PRK06276 189 HPLQIKKAAELIAEAERPVILAGGGVI 215 (586)
T ss_pred CHHHHHHHHHHHHcCCCeEEEECCCcC
Confidence 467899999999999999999999974
No 255
>PRK08266 hypothetical protein; Provisional
Probab=28.65 E-value=72 Score=31.24 Aligned_cols=28 Identities=14% Similarity=0.293 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy1452 34 VEESDINKLKQFIEKYNKILVVTGAGIS 61 (268)
Q Consensus 34 ~~~~~l~~l~~~l~~a~~ivi~tGAGiS 61 (268)
.....++++++.|.+|++.+|++|.|.+
T Consensus 190 ~~~~~i~~~~~~L~~AkrPvIv~G~g~~ 217 (542)
T PRK08266 190 PDPDAIAAAAALIAAAKNPMIFVGGGAA 217 (542)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECCChh
Confidence 3456799999999999999999999964
No 256
>TIGR03662 Chlor_Arch_YYY Chlor_Arch_YYY domain. Members of this highly hydrophobic probable integral membrane family belong to two classes. In one, a single copy of the region modeled by This model represents essentially the full length of a strongly hydrophobic protein of about 700 to 900 residues (variable because of long inserts in some). The domain architecture of the other class consists of an additional N-terminal region, two copies of the region represented by this model, and three to four repeats of TPR, or tetratricopeptide repeat. The unusual species range includes several Archaea, several Chloroflexi, and Clostridium phytofermentans. An unusual motif YYYxG is present, and we suggest the name Chlor_Arch_YYY protein. The function is unknown.
Probab=28.52 E-value=67 Score=33.09 Aligned_cols=32 Identities=9% Similarity=0.333 Sum_probs=21.4
Q ss_pred HHHHHHHHh--CCc-EEEEe-------CcccccccCCCCccC
Q psy1452 40 NKLKQFIEK--YNK-ILVVT-------GAGISTESGIPDYRS 71 (268)
Q Consensus 40 ~~l~~~l~~--a~~-ivi~t-------GAGiS~~sGiP~fr~ 71 (268)
..+.++|++ .+. +|+-+ +..+|+.+|+||.-+
T Consensus 596 ~~Ai~WLr~n~~g~~ViLeA~g~~Y~~~~rvSa~TGlpTVlG 637 (723)
T TIGR03662 596 AAAIRWLRQNIDGTPVILEAAGDSYTYASRVSAATGLPTVIG 637 (723)
T ss_pred HHHHHHHHhcCCCCCEEEecCCccccCCccchhhcCCcceec
Confidence 345566665 233 44443 667999999999876
No 257
>PF13005 zf-IS66: zinc-finger binding domain of transposase IS66 ; InterPro: IPR024474 This entry represents a predicted helix-turn-helix domain from insertion element IS66 transposases [].
Probab=28.44 E-value=30 Score=21.87 Aligned_cols=11 Identities=55% Similarity=1.361 Sum_probs=9.5
Q ss_pred CCCCCCCCeec
Q psy1452 213 PQCPHCHGDLK 223 (268)
Q Consensus 213 P~Cp~Cgg~lr 223 (268)
..||.||+.|.
T Consensus 3 ~~C~~Cg~~l~ 13 (47)
T PF13005_consen 3 RACPDCGGELK 13 (47)
T ss_pred CcCCCCCceee
Confidence 47999999887
No 258
>TIGR01031 rpmF_bact ribosomal protein L32. This protein describes bacterial ribosomal protein L32. The noise cutoff is set low enough to include the equivalent protein from mitochondria and chloroplasts. No related proteins from the Archaea nor from the eukaryotic cytosol are detected by this model. This model is a fragment model; the putative L32 of some species shows similarity only toward the N-terminus.
Probab=28.42 E-value=36 Score=22.86 Aligned_cols=18 Identities=28% Similarity=0.506 Sum_probs=15.1
Q ss_pred CCCCCCCCCCeecccEEE
Q psy1452 211 HVPQCPHCHGDLKPDIVF 228 (268)
Q Consensus 211 ~iP~Cp~Cgg~lrP~Vv~ 228 (268)
.+-.|+.||...+|+-+-
T Consensus 25 ~l~~C~~cG~~~~~H~vc 42 (55)
T TIGR01031 25 TLVVCPNCGEFKLPHRVC 42 (55)
T ss_pred cceECCCCCCcccCeeEC
Confidence 356799999999998885
No 259
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=28.36 E-value=74 Score=30.00 Aligned_cols=32 Identities=19% Similarity=0.387 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEeCcccccccC
Q psy1452 34 VEESDINKLKQFIEKYNKILVVTGAGISTESG 65 (268)
Q Consensus 34 ~~~~~l~~l~~~l~~a~~ivi~tGAGiS~~sG 65 (268)
++-..++++++.+++|+.-+|+-|-|++-+-|
T Consensus 230 vp~~~i~e~a~~mKna~Fg~if~GlGlt~S~g 261 (429)
T COG1029 230 VPIEEIEELADMMKNAKFGAIFVGLGLTSSRG 261 (429)
T ss_pred CCHHHHHHHHHHHhcCCcceEEEeeceeeccc
Confidence 34578999999999999999999999986644
No 260
>PRK03922 hypothetical protein; Provisional
Probab=28.35 E-value=38 Score=26.15 Aligned_cols=21 Identities=19% Similarity=0.523 Sum_probs=16.7
Q ss_pred CCCCCCCCCeecccEEEeCCC
Q psy1452 212 VPQCPHCHGDLKPDIVFFGDN 232 (268)
Q Consensus 212 iP~Cp~Cgg~lrP~Vv~fgE~ 232 (268)
.-.||.||.++.|-.+.=+..
T Consensus 49 ~~~cP~cge~~~~afvvA~ta 69 (113)
T PRK03922 49 LTICPKCGEPFDSAFVVADTA 69 (113)
T ss_pred cccCCCCCCcCCcEEEEeccc
Confidence 567999999999988765554
No 261
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=28.31 E-value=72 Score=31.38 Aligned_cols=27 Identities=11% Similarity=0.414 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy1452 35 EESDINKLKQFIEKYNKILVVTGAGIS 61 (268)
Q Consensus 35 ~~~~l~~l~~~l~~a~~ivi~tGAGiS 61 (268)
....+++++++|.+|++-+|++|.|+.
T Consensus 192 ~~~~~~~~~~~L~~AkrPvi~~G~g~~ 218 (554)
T TIGR03254 192 SPDSVDRAVELLKDAKRPLILLGKGAA 218 (554)
T ss_pred CHHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 467899999999999999999999986
No 262
>PRK12474 hypothetical protein; Provisional
Probab=28.31 E-value=56 Score=31.87 Aligned_cols=19 Identities=11% Similarity=0.459 Sum_probs=16.0
Q ss_pred HHHHHhhhCCEEEEEcccc
Q psy1452 240 KIDHLVRSCDGVLVLGSSL 258 (268)
Q Consensus 240 ~~~~~~~~~DlllviGTSl 258 (268)
.+.+.+++||+||++|+++
T Consensus 259 ~~~~~~~~aDlvl~lG~~~ 277 (518)
T PRK12474 259 QITAFLKDVEQLVLVGAKP 277 (518)
T ss_pred HHHHHHhhCCEEEEECCCC
Confidence 3456888999999999985
No 263
>PLN02573 pyruvate decarboxylase
Probab=28.29 E-value=51 Score=32.74 Aligned_cols=28 Identities=21% Similarity=0.355 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHHhCCcEEEEeCccccc
Q psy1452 35 EESDINKLKQFIEKYNKILVVTGAGIST 62 (268)
Q Consensus 35 ~~~~l~~l~~~l~~a~~ivi~tGAGiS~ 62 (268)
....+++++++|++|++.+|++|.|+..
T Consensus 210 ~~~~~~~a~~~L~~AkrPvil~G~g~~~ 237 (578)
T PLN02573 210 LEAAVEAAAEFLNKAVKPVLVGGPKLRV 237 (578)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEChhhcc
Confidence 3567999999999999999999999863
No 264
>PF11590 DNAPolymera_Pol: DNA polymerase catalytic subunit Pol; InterPro: IPR021639 This family of proteins represents the catalytic subunit, Pol, of the Herpes simplex virus DNA polymerase. Pol binds UL42, making up the DNA polymerase. UL42 is a processivity subunit which binds to the C-terminal of Pol in a similar way that the cell cycle regulator p21 binds to PCNA []. ; GO: 0003887 DNA-directed DNA polymerase activity, 0004523 ribonuclease H activity; PDB: 1DML_H.
Probab=28.24 E-value=50 Score=20.75 Aligned_cols=23 Identities=13% Similarity=0.232 Sum_probs=13.1
Q ss_pred HHHHHHHhCCcEEEEeCcccccc
Q psy1452 41 KLKQFIEKYNKILVVTGAGISTE 63 (268)
Q Consensus 41 ~l~~~l~~a~~ivi~tGAGiS~~ 63 (268)
+.+..|..|.--.|.+|+|++..
T Consensus 2 e~a~Rl~~AgF~~i~~g~g~~~~ 24 (41)
T PF11590_consen 2 ETAERLRSAGFATIGSGAGLPSS 24 (41)
T ss_dssp HHHHHHHHTT-EEECTTS-----
T ss_pred hHHHHHHHHhHHHhccCccccch
Confidence 35666777888888888887753
No 265
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=28.23 E-value=47 Score=32.68 Aligned_cols=27 Identities=0% Similarity=0.043 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCccccc
Q psy1452 36 ESDINKLKQFIEKYNKILVVTGAGIST 62 (268)
Q Consensus 36 ~~~l~~l~~~l~~a~~ivi~tGAGiS~ 62 (268)
...++++.++|++|++.+|++|.|+..
T Consensus 188 ~~~v~~~~~~l~~AkrPvi~~G~g~~~ 214 (535)
T TIGR03394 188 DACADEVLARMRSATSPVMMVCVEVRR 214 (535)
T ss_pred HHHHHHHHHHHHhCCCCEEEEChhhcc
Confidence 467899999999999999999999863
No 266
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=28.20 E-value=35 Score=36.41 Aligned_cols=13 Identities=38% Similarity=0.889 Sum_probs=10.0
Q ss_pred CCCCCCCCeeccc
Q psy1452 213 PQCPHCHGDLKPD 225 (268)
Q Consensus 213 P~Cp~Cgg~lrP~ 225 (268)
..||.|||.+.+-
T Consensus 839 ~~~~~~~~~~~~~ 851 (1006)
T PRK12775 839 GMCPACGGKLQAL 851 (1006)
T ss_pred CcCcccccchhhh
Confidence 4899999986543
No 267
>PRK07064 hypothetical protein; Provisional
Probab=28.20 E-value=51 Score=32.28 Aligned_cols=22 Identities=36% Similarity=0.674 Sum_probs=17.9
Q ss_pred HHHHHhhhCCEEEEEccccccc
Q psy1452 240 KIDHLVRSCDGVLVLGSSLTVS 261 (268)
Q Consensus 240 ~~~~~~~~~DlllviGTSl~V~ 261 (268)
.+.+.+++||++|++|+++.-.
T Consensus 257 ~~~~~~~~aDlvl~iG~~~~~~ 278 (544)
T PRK07064 257 AVEALYKTCDLLLVVGSRLRGN 278 (544)
T ss_pred HHHHHHHhCCEEEEecCCCCcc
Confidence 4567788999999999988643
No 268
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=28.16 E-value=64 Score=32.04 Aligned_cols=28 Identities=14% Similarity=0.344 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy1452 34 VEESDINKLKQFIEKYNKILVVTGAGIS 61 (268)
Q Consensus 34 ~~~~~l~~l~~~l~~a~~ivi~tGAGiS 61 (268)
.....++.++++|.+|++.+|++|.|+.
T Consensus 185 ~~~~~i~~a~~~L~~A~rPvil~G~g~~ 212 (588)
T PRK07525 185 GGEQSLAEAAELLSEAKFPVILSGAGVV 212 (588)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 3567899999999999999999999985
No 269
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=28.07 E-value=32 Score=25.63 Aligned_cols=15 Identities=20% Similarity=0.457 Sum_probs=11.6
Q ss_pred ceeeCCCCcccchhh
Q psy1452 161 RVMCLGCDYEIDRHK 175 (268)
Q Consensus 161 ~~~C~~C~~~~~~~~ 175 (268)
..+|..|+++....+
T Consensus 33 rS~C~~C~~~L~~~~ 47 (92)
T PF06750_consen 33 RSHCPHCGHPLSWWD 47 (92)
T ss_pred CCcCcCCCCcCcccc
Confidence 578999999875444
No 270
>COG4019 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.03 E-value=66 Score=25.63 Aligned_cols=24 Identities=25% Similarity=0.562 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCcc
Q psy1452 36 ESDINKLKQFIEKYNKILVVTGAG 59 (268)
Q Consensus 36 ~~~l~~l~~~l~~a~~ivi~tGAG 59 (268)
+..++.+++.|.+|++++|.||.-
T Consensus 23 eeEve~ireyi~sA~r~vV~t~N~ 46 (156)
T COG4019 23 EEEVEKIREYIVSAKRIVVATNNQ 46 (156)
T ss_pred HHHHHHHHHHHhccceEEEecCCH
Confidence 457899999999999999987753
No 271
>PF14319 Zn_Tnp_IS91: Transposase zinc-binding domain
Probab=27.89 E-value=37 Score=26.15 Aligned_cols=12 Identities=33% Similarity=0.598 Sum_probs=8.1
Q ss_pred cceeeCCCCccc
Q psy1452 160 FRVMCLGCDYEI 171 (268)
Q Consensus 160 ~~~~C~~C~~~~ 171 (268)
...+|..|+...
T Consensus 41 ~~~~C~~Cg~~~ 52 (111)
T PF14319_consen 41 HRYRCEDCGHEK 52 (111)
T ss_pred ceeecCCCCceE
Confidence 346788888764
No 272
>PRK11269 glyoxylate carboligase; Provisional
Probab=27.74 E-value=52 Score=32.71 Aligned_cols=21 Identities=19% Similarity=0.093 Sum_probs=16.9
Q ss_pred HHHHHhhhCCEEEEEcccccc
Q psy1452 240 KIDHLVRSCDGVLVLGSSLTV 260 (268)
Q Consensus 240 ~~~~~~~~~DlllviGTSl~V 260 (268)
.+.+.+.+||+||++|+++.-
T Consensus 263 ~~~~~~~~aDlvl~lG~~~~~ 283 (591)
T PRK11269 263 YGNATLLASDFVLGIGNRWAN 283 (591)
T ss_pred HHHHHHHhCCEEEEeCCCCCc
Confidence 345678899999999999753
No 273
>PRK09401 reverse gyrase; Reviewed
Probab=27.70 E-value=50 Score=35.95 Aligned_cols=34 Identities=26% Similarity=0.509 Sum_probs=22.2
Q ss_pred CCCCCCCCeecccEEEeCCCCChHHHHHHHHHhhhCCEEEEE
Q psy1452 213 PQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVL 254 (268)
Q Consensus 213 P~Cp~Cgg~lrP~Vv~fgE~~~~~~~~~~~~~~~~~Dlllvi 254 (268)
..||.||....++ ..+.++...+.+.+||.|++-
T Consensus 693 ~~~~~c~~~~~~~--------k~~~~~~Lr~l~~~~d~IiiA 726 (1176)
T PRK09401 693 DKCPRCGSTNIED--------KEEIIEALRELALEVDEVLIA 726 (1176)
T ss_pred ccccccccccCCC--------HHHHHHHHHHHHhcCCEEEEc
Confidence 3677776443111 235788888888999987654
No 274
>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger, an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes an approximately 55-residue Sec23/24 zinc-binding domain, which lies against the beta-barrel at the periphery of the complex. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EFO_B 3EG9_B 3EGD_A 2YRC_A 2NUP_A 2YRD_A 3EGX_A 2NUT_A 3EH1_A 1PD0_A ....
Probab=27.67 E-value=27 Score=21.65 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=11.2
Q ss_pred CCCCCCCCCeecccEEEeC
Q psy1452 212 VPQCPHCHGDLKPDIVFFG 230 (268)
Q Consensus 212 iP~Cp~Cgg~lrP~Vv~fg 230 (268)
+++|.+|++.|=|-+.+-.
T Consensus 2 p~rC~~C~aylNp~~~~~~ 20 (40)
T PF04810_consen 2 PVRCRRCRAYLNPFCQFDD 20 (40)
T ss_dssp S-B-TTT--BS-TTSEEET
T ss_pred ccccCCCCCEECCcceEcC
Confidence 5799999999999887743
No 275
>PRK08266 hypothetical protein; Provisional
Probab=27.62 E-value=51 Score=32.29 Aligned_cols=22 Identities=27% Similarity=0.280 Sum_probs=17.5
Q ss_pred HHHHHhhhCCEEEEEccccccc
Q psy1452 240 KIDHLVRSCDGVLVLGSSLTVS 261 (268)
Q Consensus 240 ~~~~~~~~~DlllviGTSl~V~ 261 (268)
.+.+.+.+||+||++|+++...
T Consensus 256 ~~~~~~~~aDlvl~lG~~~~~~ 277 (542)
T PRK08266 256 AAYELWPQTDVVIGIGSRLELP 277 (542)
T ss_pred HHHHHHHhCCEEEEeCCCcCcc
Confidence 3456788999999999998543
No 276
>PRK15482 transcriptional regulator MurR; Provisional
Probab=27.56 E-value=60 Score=28.86 Aligned_cols=29 Identities=24% Similarity=0.295 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEeCcccccc
Q psy1452 34 VEESDINKLKQFIEKYNKILVVTGAGISTE 63 (268)
Q Consensus 34 ~~~~~l~~l~~~l~~a~~ivi~tGAGiS~~ 63 (268)
.....+++++++|.+|++ |.+.|.|.|..
T Consensus 120 id~~~l~~~~~~i~~A~~-I~i~G~G~S~~ 148 (285)
T PRK15482 120 FDYARLQKIIEVISKAPF-IQITGLGGSAL 148 (285)
T ss_pred cCHHHHHHHHHHHHhCCe-eEEEEeChhHH
Confidence 345678999999999998 56778887744
No 277
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=27.50 E-value=51 Score=32.25 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=16.6
Q ss_pred HHHHHhhhCCEEEEEccccc
Q psy1452 240 KIDHLVRSCDGVLVLGSSLT 259 (268)
Q Consensus 240 ~~~~~~~~~DlllviGTSl~ 259 (268)
.+.+.+++||+||++|+++.
T Consensus 255 ~~~~~~~~aDlvl~lG~~~~ 274 (539)
T TIGR02418 255 PGDRLLKQADLVITIGYDPI 274 (539)
T ss_pred HHHHHHHhCCEEEEecCccc
Confidence 34567889999999999975
No 278
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=27.50 E-value=26 Score=20.07 Aligned_cols=10 Identities=40% Similarity=1.012 Sum_probs=5.3
Q ss_pred CCCCCCCeec
Q psy1452 214 QCPHCHGDLK 223 (268)
Q Consensus 214 ~Cp~Cgg~lr 223 (268)
.||.||+.+.
T Consensus 1 ~CP~C~s~l~ 10 (28)
T PF03119_consen 1 TCPVCGSKLV 10 (28)
T ss_dssp B-TTT--BEE
T ss_pred CcCCCCCEeE
Confidence 4999998765
No 279
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=27.25 E-value=29 Score=27.79 Aligned_cols=15 Identities=20% Similarity=0.507 Sum_probs=11.3
Q ss_pred cccceeeCCCCcccc
Q psy1452 158 TAFRVMCLGCDYEID 172 (268)
Q Consensus 158 ~~~~~~C~~C~~~~~ 172 (268)
.-....|..|+..+.
T Consensus 120 ~~~~~~C~~C~~~~~ 134 (157)
T PF10263_consen 120 KKYVYRCPSCGREYK 134 (157)
T ss_pred cceEEEcCCCCCEee
Confidence 445788999998764
No 280
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=27.22 E-value=54 Score=32.41 Aligned_cols=20 Identities=15% Similarity=0.429 Sum_probs=16.7
Q ss_pred HHHHHhhhCCEEEEEccccc
Q psy1452 240 KIDHLVRSCDGVLVLGSSLT 259 (268)
Q Consensus 240 ~~~~~~~~~DlllviGTSl~ 259 (268)
.+.+.+.+||+||++|+++.
T Consensus 274 ~~~~~l~~aDlvL~lG~~~~ 293 (571)
T PRK07710 274 TANMALYECDLLINIGARFD 293 (571)
T ss_pred HHHHHHHhCCEEEEeCCCCC
Confidence 35567889999999999984
No 281
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=27.22 E-value=54 Score=32.31 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=17.6
Q ss_pred HHHHHhhhCCEEEEEccccccc
Q psy1452 240 KIDHLVRSCDGVLVLGSSLTVS 261 (268)
Q Consensus 240 ~~~~~~~~~DlllviGTSl~V~ 261 (268)
.+.+.+.+||+||++|+++...
T Consensus 270 ~~~~~l~~aDlvl~lG~~~~~~ 291 (564)
T PRK08155 270 STNYILQEADLLIVLGARFDDR 291 (564)
T ss_pred HHHHHHHhCCEEEEECCCCCcc
Confidence 3556788999999999998643
No 282
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=27.20 E-value=54 Score=32.42 Aligned_cols=22 Identities=14% Similarity=0.295 Sum_probs=17.6
Q ss_pred HHHHHhhhCCEEEEEccccccc
Q psy1452 240 KIDHLVRSCDGVLVLGSSLTVS 261 (268)
Q Consensus 240 ~~~~~~~~~DlllviGTSl~V~ 261 (268)
.+.+.+++||+||++|+++...
T Consensus 265 ~~~~~l~~aD~il~vG~~~~~~ 286 (574)
T PRK06466 265 EANMAMHHADVILAVGARFDDR 286 (574)
T ss_pred HHHHHHHhCCEEEEECCCCCcc
Confidence 3456788999999999998643
No 283
>PF04194 PDCD2_C: Programmed cell death protein 2, C-terminal putative domain ; InterPro: IPR007320 PDCD2 is localized predominantly in the cytosol of cells situated at the opposite pole of the germinal centre from the centroblasts as well as in cells in the mantle zone. It has been shown to interact with BCL6, an evolutionarily conserved Kruppel-type zinc finger protein that functions as a strong transcriptional repressor and is required for germinal centre development. The rat homologue, Rp8, is associated with programmed cell death in thymocytes.; GO: 0005737 cytoplasm
Probab=26.95 E-value=31 Score=28.43 Aligned_cols=10 Identities=30% Similarity=1.139 Sum_probs=9.2
Q ss_pred CCCCCCCCCe
Q psy1452 212 VPQCPHCHGD 221 (268)
Q Consensus 212 iP~Cp~Cgg~ 221 (268)
+|+|++||+.
T Consensus 97 ip~C~~Cg~~ 106 (164)
T PF04194_consen 97 IPKCENCGSP 106 (164)
T ss_pred CCCCccCCCc
Confidence 8999999985
No 284
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=26.85 E-value=24 Score=23.50 Aligned_cols=14 Identities=21% Similarity=0.617 Sum_probs=7.1
Q ss_pred CCCCCCCCCCCeec
Q psy1452 210 FHVPQCPHCHGDLK 223 (268)
Q Consensus 210 ~~iP~Cp~Cgg~lr 223 (268)
...+.||.|+..++
T Consensus 22 ~~PatCP~C~a~~~ 35 (54)
T PF09237_consen 22 EQPATCPICGAVIR 35 (54)
T ss_dssp S--EE-TTT--EES
T ss_pred CCCCCCCcchhhcc
Confidence 35789999998765
No 285
>PF14952 zf-tcix: Putative treble-clef, zinc-finger, Zn-binding
Probab=26.84 E-value=31 Score=22.13 Aligned_cols=10 Identities=30% Similarity=1.032 Sum_probs=8.4
Q ss_pred CCCCCCCCCC
Q psy1452 211 HVPQCPHCHG 220 (268)
Q Consensus 211 ~iP~Cp~Cgg 220 (268)
.+.+||+||.
T Consensus 10 GirkCp~CGt 19 (44)
T PF14952_consen 10 GIRKCPKCGT 19 (44)
T ss_pred ccccCCcCcC
Confidence 4889999984
No 286
>COG4588 AcfC Accessory colonization factor AcfC, contains ABC-type periplasmic domain [General function prediction only]
Probab=26.80 E-value=28 Score=30.18 Aligned_cols=33 Identities=27% Similarity=0.442 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhCCcEEEEeCcccccccCCCCc
Q psy1452 37 SDINKLKQFIEKYNKILVVTGAGISTESGIPDY 69 (268)
Q Consensus 37 ~~l~~l~~~l~~a~~ivi~tGAGiS~~sGiP~f 69 (268)
.+|..+.++++..=.|||--|||.|..||---|
T Consensus 113 knIk~~eDll~~gi~ivV~dGaG~sntsgtgvw 145 (252)
T COG4588 113 KNIKGFEDLLKPGIGIVVNDGAGVSNTSGTGVW 145 (252)
T ss_pred cccccHHHHhcCCceEEEeCCCcccCCCCceeh
Confidence 468889999999999999999999998875433
No 287
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=26.65 E-value=58 Score=31.95 Aligned_cols=25 Identities=0% Similarity=-0.107 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhCCcEEEEeCcccc
Q psy1452 37 SDINKLKQFIEKYNKILVVTGAGIS 61 (268)
Q Consensus 37 ~~l~~l~~~l~~a~~ivi~tGAGiS 61 (268)
..+++++++|++|++.+|++|.|+.
T Consensus 193 ~~i~~a~~~L~~AkrPvil~G~g~~ 217 (539)
T TIGR03393 193 AFRDAAENKLAMAKRVSLLADFLAL 217 (539)
T ss_pred HHHHHHHHHHHhCCCCEEEeChhhc
Confidence 3489999999999999999999984
No 288
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=26.63 E-value=32 Score=23.55 Aligned_cols=17 Identities=35% Similarity=0.819 Sum_probs=13.5
Q ss_pred CCCCCCCCCeecccEEE
Q psy1452 212 VPQCPHCHGDLKPDIVF 228 (268)
Q Consensus 212 iP~Cp~Cgg~lrP~Vv~ 228 (268)
...|+.||.++-|+-.+
T Consensus 3 HkHC~~CG~~Ip~~~~f 19 (59)
T PF09889_consen 3 HKHCPVCGKPIPPDESF 19 (59)
T ss_pred CCcCCcCCCcCCcchhh
Confidence 45799999999987444
No 289
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=26.60 E-value=57 Score=32.10 Aligned_cols=21 Identities=19% Similarity=0.458 Sum_probs=17.0
Q ss_pred HHHHHhhhCCEEEEEcccccc
Q psy1452 240 KIDHLVRSCDGVLVLGSSLTV 260 (268)
Q Consensus 240 ~~~~~~~~~DlllviGTSl~V 260 (268)
.+.+.+.+||++|+||+++..
T Consensus 260 ~~~~~l~~aD~vl~lG~~~~~ 280 (558)
T TIGR00118 260 TANLAVHECDLIIAVGARFDD 280 (558)
T ss_pred HHHHHHHhCCEEEEECCCCCc
Confidence 345678899999999998753
No 290
>PF05180 zf-DNL: DNL zinc finger; InterPro: IPR007853 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The DNL-type zinc finger is found in Tim15, a zinc finger protein essential for protein import into mitochondria. Mitochondrial functions rely on the correct transport of resident proteins synthesized in the cytosol to mitochondria. Protein import into mitochondria is mediated by membrane protein complexes, protein translocators, in the outer and inner mitochondrial membranes, in cooperation with their assistant proteins in the cytosol, intermembrane space and matrix. Proteins destined to the mitochondrial matrix cross the outer membrane with the aid of the outer membrane translocator, the tOM40 complex, and then the inner membrane with the aid of the inner membrane translocator, the TIM23 complex, and mitochondrial motor and chaperone (MMC) proteins including mitochondrial heat- shock protein 70 (mtHsp70), and translocase in the inner mitochondrial membrane (Tim)15. Tim15 is also known as zinc finger motif (Zim)17 or mtHsp70 escort protein (Hep)1. Tim15 contains a zinc-finger motif (CXXC and CXXC) of ~100 residues, which has been named DNL after a short C-terminal motif of D(N/H)L [, , ]. The DNL-type zinc finger is an L-shaped molecule. The two CXXC motifs are located at the end of the L, and are sandwiched by two- stranded antiparallel beta-sheets. Two short alpha-helices constitute another leg of the L. The outer (convex) face of the L has a large acidic groove, which is lined with five acidic residues, whereas the inner (concave) face of the L has two positively charged residues, next to the CXXC motifs []. This entry represents the DNL-type zinc finger.; GO: 0008270 zinc ion binding; PDB: 2E2Z_A.
Probab=26.54 E-value=19 Score=25.25 Aligned_cols=20 Identities=30% Similarity=0.861 Sum_probs=12.5
Q ss_pred CCCCCCCC--CeecccEEEeCC
Q psy1452 212 VPQCPHCH--GDLKPDIVFFGD 231 (268)
Q Consensus 212 iP~Cp~Cg--g~lrP~Vv~fgE 231 (268)
+-+||.|. ..+-.|.-||+|
T Consensus 29 iv~C~gC~~~HlIaDnLg~f~e 50 (66)
T PF05180_consen 29 IVQCPGCKNRHLIADNLGWFGE 50 (66)
T ss_dssp EEE-TTS--EEES--SS-SGGG
T ss_pred EEECCCCcceeeehhhhccccc
Confidence 67899997 468888889998
No 291
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=26.50 E-value=71 Score=28.92 Aligned_cols=34 Identities=26% Similarity=0.530 Sum_probs=22.2
Q ss_pred ccEEEeCCC-C-ChHHHHHHHHHhhhCCEEEEEccc
Q psy1452 224 PDIVFFGDN-I-PRHRMEKIDHLVRSCDGVLVLGSS 257 (268)
Q Consensus 224 P~Vv~fgE~-~-~~~~~~~~~~~~~~~DlllviGTS 257 (268)
|++..|+.- . -..+-+++.+...++|++||||..
T Consensus 184 ~~~~v~~TIC~aT~~RQ~a~~~La~~vD~miVVGg~ 219 (281)
T PRK12360 184 KELVFFNTICSATKKRQESAKELSKEVDVMIVIGGK 219 (281)
T ss_pred cccccCCCcchhhhhHHHHHHHHHHhCCEEEEecCC
Confidence 455555442 1 233455567777789999999975
No 292
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=26.45 E-value=69 Score=31.70 Aligned_cols=27 Identities=15% Similarity=0.362 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy1452 35 EESDINKLKQFIEKYNKILVVTGAGIS 61 (268)
Q Consensus 35 ~~~~l~~l~~~l~~a~~ivi~tGAGiS 61 (268)
..+.+++++++|.+|++.+|++|.|+.
T Consensus 192 ~~~~i~~~~~~L~~A~rPvil~G~g~~ 218 (574)
T PRK06466 192 HSGQIRKAVEMLLAAKRPVIYSGGGVV 218 (574)
T ss_pred CHHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 456899999999999999999999985
No 293
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=26.40 E-value=30 Score=19.24 Aligned_cols=8 Identities=38% Similarity=1.024 Sum_probs=6.4
Q ss_pred CCCCCCCC
Q psy1452 212 VPQCPHCH 219 (268)
Q Consensus 212 iP~Cp~Cg 219 (268)
.-.||+||
T Consensus 16 ~f~CPnCG 23 (24)
T PF07754_consen 16 PFPCPNCG 23 (24)
T ss_pred eEeCCCCC
Confidence 45799998
No 294
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=26.29 E-value=58 Score=32.22 Aligned_cols=20 Identities=30% Similarity=0.574 Sum_probs=16.4
Q ss_pred HHHHhhhCCEEEEEcccccc
Q psy1452 241 IDHLVRSCDGVLVLGSSLTV 260 (268)
Q Consensus 241 ~~~~~~~~DlllviGTSl~V 260 (268)
+.+.+++||+||++|+++..
T Consensus 259 ~~~~~~~aDlvl~lG~~~~~ 278 (574)
T PRK09124 259 GYHAMMNCDTLLMLGTDFPY 278 (574)
T ss_pred HHHHHHhCCEEEEECCCCCc
Confidence 34678899999999998853
No 295
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=26.12 E-value=35 Score=24.68 Aligned_cols=14 Identities=29% Similarity=0.553 Sum_probs=11.1
Q ss_pred CcEEEEeCcccccc
Q psy1452 50 NKILVVTGAGISTE 63 (268)
Q Consensus 50 ~~ivi~tGAGiS~~ 63 (268)
+++++.+|+|++++
T Consensus 1 ~kilvvCg~G~gtS 14 (87)
T cd05567 1 KKIVFACDAGMGSS 14 (87)
T ss_pred CEEEEECCCCccHH
Confidence 46889999998764
No 296
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=25.80 E-value=70 Score=28.20 Aligned_cols=28 Identities=18% Similarity=0.386 Sum_probs=21.5
Q ss_pred CHHHHHHHHHHHHhCCcEEEEeCcccccc
Q psy1452 35 EESDINKLKQFIEKYNKILVVTGAGISTE 63 (268)
Q Consensus 35 ~~~~l~~l~~~l~~a~~ivi~tGAGiS~~ 63 (268)
...++++++++|.+|++ |++.|.|.|..
T Consensus 114 ~~~~l~~~~~~i~~a~~-I~i~G~G~s~~ 141 (278)
T PRK11557 114 SEEKLHECVTMLRSARR-IILTGIGASGL 141 (278)
T ss_pred CHHHHHHHHHHHhcCCe-EEEEecChhHH
Confidence 45678899999999987 55677787744
No 297
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=25.78 E-value=76 Score=31.37 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy1452 35 EESDINKLKQFIEKYNKILVVTGAGIS 61 (268)
Q Consensus 35 ~~~~l~~l~~~l~~a~~ivi~tGAGiS 61 (268)
....+++++++|.+|++.+|++|.|+.
T Consensus 201 ~~~~i~~~~~~L~~A~rPvIl~G~g~~ 227 (571)
T PRK07710 201 NLLQIRKLVQAVSVAKKPVILAGAGVL 227 (571)
T ss_pred CHHHHHHHHHHHHhCCCCEEEECCCcC
Confidence 456799999999999999999999974
No 298
>PRK12686 carbamate kinase; Reviewed
Probab=25.73 E-value=1.2e+02 Score=27.93 Aligned_cols=51 Identities=24% Similarity=0.458 Sum_probs=35.3
Q ss_pred ccCCCCCCCcccccCCCCCCCHHHHHHHHHHHHhCCcEEEEeCcccccccCCCCccC
Q psy1452 15 IVPPDVTSRSISFIPKHKPVEESDINKLKQFIEKYNKILVVTGAGISTESGIPDYRS 71 (268)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~a~~ivi~tGAGiS~~sGiP~fr~ 71 (268)
.+.+|+.--.-+.+|.|.|..--+.+.+..+|+ .+.|+|.+|.| |||...+
T Consensus 149 ~~~~d~~~G~rrvV~sP~P~~ive~~~I~~Ll~-~G~IpI~~Ggg-----gIPVv~~ 199 (312)
T PRK12686 149 TFKEDAGRGYRRVVPSPKPQEIIEHDTIRTLVD-GGNIVIACGGG-----GIPVIRD 199 (312)
T ss_pred cccccCCCCeEEeeCCCCCccccCHHHHHHHHH-CCCEEEEeCCC-----CCCeEec
Confidence 455565444556788888876556666666666 78888888887 8886553
No 299
>PRK02935 hypothetical protein; Provisional
Probab=25.61 E-value=53 Score=25.24 Aligned_cols=19 Identities=37% Similarity=0.639 Sum_probs=12.9
Q ss_pred CCCCCCCCCeecccEEEeC
Q psy1452 212 VPQCPHCHGDLKPDIVFFG 230 (268)
Q Consensus 212 iP~Cp~Cgg~lrP~Vv~fg 230 (268)
.-.|..|+.+|.-+--+-|
T Consensus 86 vD~CM~C~~PLTLd~~leg 104 (110)
T PRK02935 86 VDACMHCNQPLTLDRSLEG 104 (110)
T ss_pred eeecCcCCCcCCcCccccc
Confidence 4579999988775544433
No 300
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=25.54 E-value=45 Score=32.84 Aligned_cols=20 Identities=30% Similarity=0.213 Sum_probs=16.4
Q ss_pred HHHHHhhhCCEEEEEccccc
Q psy1452 240 KIDHLVRSCDGVLVLGSSLT 259 (268)
Q Consensus 240 ~~~~~~~~~DlllviGTSl~ 259 (268)
.+.+.+++||++|++|++|.
T Consensus 279 ~~~~~l~~aD~vl~vG~~l~ 298 (568)
T PRK07449 279 KAAEELLQPDIVIQFGSPPT 298 (568)
T ss_pred hhhhhcCCCCEEEEeCCCCC
Confidence 34567789999999999984
No 301
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=25.52 E-value=62 Score=32.15 Aligned_cols=20 Identities=15% Similarity=0.320 Sum_probs=16.9
Q ss_pred HHHHHhhhCCEEEEEccccc
Q psy1452 240 KIDHLVRSCDGVLVLGSSLT 259 (268)
Q Consensus 240 ~~~~~~~~~DlllviGTSl~ 259 (268)
.+.+.+.+||++|++|+++.
T Consensus 262 ~~~~~l~~aD~vl~lG~~~~ 281 (586)
T PRK06276 262 AANYSVTESDVLIAIGCRFS 281 (586)
T ss_pred HHHHHHHcCCEEEEECCCCC
Confidence 45677889999999999875
No 302
>PRK00415 rps27e 30S ribosomal protein S27e; Reviewed
Probab=25.25 E-value=27 Score=23.97 Aligned_cols=18 Identities=22% Similarity=0.477 Sum_probs=13.4
Q ss_pred EecccccceeeCCCCccc
Q psy1452 154 EMHGTAFRVMCLGCDYEI 171 (268)
Q Consensus 154 elHG~~~~~~C~~C~~~~ 171 (268)
+..+.+-..+|..|+.+.
T Consensus 4 ~p~S~F~~VkCp~C~n~q 21 (59)
T PRK00415 4 QPRSRFLKVKCPDCGNEQ 21 (59)
T ss_pred CCCCeEEEEECCCCCCeE
Confidence 345666788999999865
No 303
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=24.98 E-value=1.1e+02 Score=25.73 Aligned_cols=37 Identities=22% Similarity=0.349 Sum_probs=26.5
Q ss_pred ecccEEEeCCCCChHHHHHHHHHhh-hCCEEEEEcccccc
Q psy1452 222 LKPDIVFFGDNIPRHRMEKIDHLVR-SCDGVLVLGSSLTV 260 (268)
Q Consensus 222 lrP~Vv~fgE~~~~~~~~~~~~~~~-~~DlllviGTSl~V 260 (268)
.+|.+++||..+.+ .++.+.+.+. +-+++|++| .-.|
T Consensus 78 ~vvhLtmyga~~~~-~~~~ir~~~~~~~p~LIvvG-g~gv 115 (176)
T PRK03958 78 IVVHLTMYGENIQD-VEPEIREAHRKGEPLLIVVG-AEKV 115 (176)
T ss_pred cEEEEEEecCCccc-hHHHHHHhhccCCcEEEEEc-CCCC
Confidence 47899999999876 5666666553 347999999 5444
No 304
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=24.97 E-value=80 Score=31.16 Aligned_cols=27 Identities=19% Similarity=0.286 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy1452 35 EESDINKLKQFIEKYNKILVVTGAGIS 61 (268)
Q Consensus 35 ~~~~l~~l~~~l~~a~~ivi~tGAGiS 61 (268)
....+++++++|.+|++.||++|.|+.
T Consensus 192 ~~~~i~~~~~~l~~A~rPvi~~G~g~~ 218 (574)
T PRK06882 192 HKGQIKKALKALLVAKKPVLFVGGGVI 218 (574)
T ss_pred CHHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 457799999999999999999999985
No 305
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=24.97 E-value=24 Score=29.17 Aligned_cols=40 Identities=18% Similarity=0.350 Sum_probs=23.7
Q ss_pred cEEEeccCcchhhhhcCCc--eEE-----ecccccceeeCCCCcccc
Q psy1452 133 SYIITQNVDGLHYKAGNKK--VIE-----MHGTAFRVMCLGCDYEID 172 (268)
Q Consensus 133 ~~iiTqNiD~L~~~aG~~~--v~e-----lHG~~~~~~C~~C~~~~~ 172 (268)
.+++--|+-.-..+++... |+| --++-..+.|.+|+....
T Consensus 79 ~flvP~gvpHsP~r~~~t~~LvIE~~r~~~~~d~~~wyc~~c~~~~~ 125 (159)
T TIGR03037 79 IFLLPPHVPHSPQRPAGSIGLVIERKRPQGELDGFQWFCPQCGHKLH 125 (159)
T ss_pred EEEeCCCCCcccccCCCcEEEEEEeCCCCCCCcceEEECCCCCCeEE
Confidence 3667777776666654221 122 124555778999987653
No 306
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=24.85 E-value=72 Score=31.02 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=16.2
Q ss_pred eEEecccccceeeCCCCcccc
Q psy1452 152 VIEMHGTAFRVMCLGCDYEID 172 (268)
Q Consensus 152 v~elHG~~~~~~C~~C~~~~~ 172 (268)
+..--+....++|..|+..|+
T Consensus 416 ~~~~~~~~~~~~c~~c~~~yd 436 (479)
T PRK05452 416 ATTTADLGPRMQCSVCQWIYD 436 (479)
T ss_pred cccccCCCCeEEECCCCeEEC
Confidence 445556777899999998875
No 307
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=24.78 E-value=98 Score=20.23 Aligned_cols=21 Identities=14% Similarity=0.265 Sum_probs=15.0
Q ss_pred ceeeCCCCcccchhhHHHHHH
Q psy1452 161 RVMCLGCDYEIDRHKFQKILE 181 (268)
Q Consensus 161 ~~~C~~C~~~~~~~~~~~~~~ 181 (268)
.+.|+-|++..+...+..-+.
T Consensus 2 ~f~CP~C~~~~~~~~L~~H~~ 22 (54)
T PF05605_consen 2 SFTCPYCGKGFSESSLVEHCE 22 (54)
T ss_pred CcCCCCCCCccCHHHHHHHHH
Confidence 468999999776666665554
No 308
>PRK08617 acetolactate synthase; Reviewed
Probab=24.62 E-value=59 Score=31.93 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=15.8
Q ss_pred HHHHhhhCCEEEEEccccc
Q psy1452 241 IDHLVRSCDGVLVLGSSLT 259 (268)
Q Consensus 241 ~~~~~~~~DlllviGTSl~ 259 (268)
+.+.+++||++|++|+++.
T Consensus 262 ~~~~~~~aDlvl~lG~~~~ 280 (552)
T PRK08617 262 GDELLKKADLVITIGYDPI 280 (552)
T ss_pred HHHHHHhCCEEEEecCccc
Confidence 4467889999999999874
No 309
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=24.58 E-value=44 Score=33.08 Aligned_cols=20 Identities=25% Similarity=0.155 Sum_probs=16.4
Q ss_pred HHHHhhhCCEEEEEcccccc
Q psy1452 241 IDHLVRSCDGVLVLGSSLTV 260 (268)
Q Consensus 241 ~~~~~~~~DlllviGTSl~V 260 (268)
+.+.++++|++|++||+|..
T Consensus 273 ~~~~~~~aDlvl~lG~~l~~ 292 (569)
T PRK08327 273 PRADLAEADLVLVVDSDVPW 292 (569)
T ss_pred cchhhhhCCEEEEeCCCCCC
Confidence 45677899999999998753
No 310
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=24.48 E-value=36 Score=21.88 Aligned_cols=12 Identities=42% Similarity=0.960 Sum_probs=8.8
Q ss_pred CCCCCCCeeccc
Q psy1452 214 QCPHCHGDLKPD 225 (268)
Q Consensus 214 ~Cp~Cgg~lrP~ 225 (268)
.||.||..|.+.
T Consensus 2 FCp~Cg~~l~~~ 13 (52)
T smart00661 2 FCPKCGNMLIPK 13 (52)
T ss_pred CCCCCCCccccc
Confidence 589999876554
No 311
>PF04981 NMD3: NMD3 family ; InterPro: IPR007064 The NMD3 protein is involved in nonsense mediated mRNA decay. This N-terminal region contains four conserved CXXC motifs that could be metal binding. NMD3 is involved in export of the 60S ribosomal subunit is mediated by the adapter protein Nmd3p in a Crm1p-dependent pathway [].
Probab=24.25 E-value=87 Score=27.30 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=13.3
Q ss_pred CCCCCCCCCCeecccE
Q psy1452 211 HVPQCPHCHGDLKPDI 226 (268)
Q Consensus 211 ~iP~Cp~Cgg~lrP~V 226 (268)
.+-.|+.||....++.
T Consensus 34 ~v~~C~~Cg~~~~~~~ 49 (236)
T PF04981_consen 34 EVTICPKCGRYRIGGR 49 (236)
T ss_pred CceECCCCCCEECCCE
Confidence 5778999999998843
No 312
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=24.24 E-value=79 Score=23.99 Aligned_cols=23 Identities=13% Similarity=0.232 Sum_probs=16.0
Q ss_pred CCCCCCCCCeecccEEEeCCCCC
Q psy1452 212 VPQCPHCHGDLKPDIVFFGDNIP 234 (268)
Q Consensus 212 iP~Cp~Cgg~lrP~Vv~fgE~~~ 234 (268)
.-.|+.||-.---.|.-..|+++
T Consensus 42 h~~C~~CG~y~~~~V~~l~epID 64 (99)
T PRK14892 42 IITCGNCGLYTEFEVPSVYDEVD 64 (99)
T ss_pred eEECCCCCCccCEECCccccchh
Confidence 45799999765556666677665
No 313
>PRK13936 phosphoheptose isomerase; Provisional
Probab=24.11 E-value=77 Score=26.72 Aligned_cols=27 Identities=26% Similarity=0.302 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCcccccc
Q psy1452 36 ESDINKLKQFIEKYNKILVVTGAGISTE 63 (268)
Q Consensus 36 ~~~l~~l~~~l~~a~~ivi~tGAGiS~~ 63 (268)
++.++.+++.|.++++|.++ |.|-|..
T Consensus 30 ~~a~~~~~~~l~~a~~I~i~-G~G~S~~ 56 (197)
T PRK13936 30 AQAVELMVQALLNEGKILAC-GNGGSAA 56 (197)
T ss_pred HHHHHHHHHHHHCCCEEEEE-eCcHhHH
Confidence 46677888888888888777 8887753
No 314
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=23.77 E-value=22 Score=24.09 Aligned_cols=13 Identities=23% Similarity=0.713 Sum_probs=10.0
Q ss_pred CCCCCCCCCCeec
Q psy1452 211 HVPQCPHCHGDLK 223 (268)
Q Consensus 211 ~iP~Cp~Cgg~lr 223 (268)
..-+||.||...|
T Consensus 16 ~~lrCPRC~~~FR 28 (65)
T COG4049 16 EFLRCPRCGMVFR 28 (65)
T ss_pred eeeeCCchhHHHH
Confidence 3679999997654
No 315
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=23.65 E-value=37 Score=28.18 Aligned_cols=13 Identities=38% Similarity=1.232 Sum_probs=10.8
Q ss_pred CCCCCCCCCeecc
Q psy1452 212 VPQCPHCHGDLKP 224 (268)
Q Consensus 212 iP~Cp~Cgg~lrP 224 (268)
.-+||.|+|.|++
T Consensus 97 ~~RCp~CN~~L~~ 109 (165)
T COG1656 97 FSRCPECNGELEK 109 (165)
T ss_pred cccCcccCCEecc
Confidence 4699999998875
No 316
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=23.58 E-value=36 Score=32.41 Aligned_cols=12 Identities=33% Similarity=0.866 Sum_probs=9.7
Q ss_pred CCCCCCCCCeec
Q psy1452 212 VPQCPHCHGDLK 223 (268)
Q Consensus 212 iP~Cp~Cgg~lr 223 (268)
..+||+||+.+.
T Consensus 33 ~a~CpRCg~~L~ 44 (403)
T TIGR00155 33 KAACPRCGTTLT 44 (403)
T ss_pred eeECCCCCCCCc
Confidence 568999998873
No 317
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=23.42 E-value=25 Score=29.56 Aligned_cols=17 Identities=12% Similarity=0.249 Sum_probs=12.0
Q ss_pred hcCCCCCCCCCCCeecc
Q psy1452 208 SKFHVPQCPHCHGDLKP 224 (268)
Q Consensus 208 ~~~~iP~Cp~Cgg~lrP 224 (268)
.+....+|++||..+-+
T Consensus 153 ~~~e~rtC~~CG~v~~~ 169 (177)
T PRK13264 153 ASEELRTCDNCGTVHPG 169 (177)
T ss_pred cCHhhccCCcCCcccCc
Confidence 33457899999976543
No 318
>cd03361 TOPRIM_TopoIA_RevGyr TopoIA_RevGyr : The topoisomerase-primase (TORPIM) domain found in members of the type IA family of DNA topoisomerases (Topo IA) similar to the ATP-dependent reverse gyrase found in archaea and thermophilic bacteria. Type IA DNA topoisomerases remove (relax) negative supercoils in the DNA by: cleaving one strand of the DNA duplex, covalently linking to the 5' phosphoryl end of the DNA break and, allowing the other strand of the duplex to pass through the gap. Reverse gyrase is also able to insert positive supercoils in the presence of ATP and negative supercoils in the presence of AMPPNP. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). For topoisomerases the conserved glutamate is believed to act as a general base in strand joining and, as a general acid in strand cleavage. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=23.23 E-value=1e+02 Score=25.55 Aligned_cols=34 Identities=26% Similarity=0.519 Sum_probs=22.7
Q ss_pred CCCCCCCCCeecccEEEeCCCCChHHHHHHHHHhhhCCEEEE
Q psy1452 212 VPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLV 253 (268)
Q Consensus 212 iP~Cp~Cgg~lrP~Vv~fgE~~~~~~~~~~~~~~~~~Dlllv 253 (268)
.+.||.|+....++. .+.++...+.+.++|.|++
T Consensus 91 ~~~cp~c~~~~~~~~--------~~~~~~l~~l~~~~~~iii 124 (170)
T cd03361 91 SDKCPRCGSENIDDK--------LETLEALRELALEVDEVLI 124 (170)
T ss_pred cccCCcCCCcCCcch--------HHHHHHHHHHHhhCCEEEE
Confidence 566787776554332 2567778888899996554
No 319
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=22.96 E-value=50 Score=20.99 Aligned_cols=10 Identities=40% Similarity=0.899 Sum_probs=8.5
Q ss_pred CCCCCCCCCe
Q psy1452 212 VPQCPHCHGD 221 (268)
Q Consensus 212 iP~Cp~Cgg~ 221 (268)
.+.||+||..
T Consensus 18 g~~CP~Cg~~ 27 (46)
T PF12760_consen 18 GFVCPHCGST 27 (46)
T ss_pred CCCCCCCCCe
Confidence 5789999975
No 320
>KOG2593|consensus
Probab=22.96 E-value=41 Score=32.17 Aligned_cols=18 Identities=11% Similarity=0.270 Sum_probs=12.8
Q ss_pred ccceeeCCCCcccchhhH
Q psy1452 159 AFRVMCLGCDYEIDRHKF 176 (268)
Q Consensus 159 ~~~~~C~~C~~~~~~~~~ 176 (268)
.....|+.|.+.|..-+.
T Consensus 126 ~~~Y~Cp~C~kkyt~Lea 143 (436)
T KOG2593|consen 126 VAGYVCPNCQKKYTSLEA 143 (436)
T ss_pred cccccCCccccchhhhHH
Confidence 345789999999864443
No 321
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=22.83 E-value=45 Score=33.82 Aligned_cols=18 Identities=22% Similarity=0.611 Sum_probs=10.4
Q ss_pred CCCCCCCeecccEEEeCC
Q psy1452 214 QCPHCHGDLKPDIVFFGD 231 (268)
Q Consensus 214 ~Cp~Cgg~lrP~Vv~fgE 231 (268)
.||+||..+.++..+.++
T Consensus 29 ~Cp~CG~~~~~~~~fC~~ 46 (645)
T PRK14559 29 PCPQCGTEVPVDEAHCPN 46 (645)
T ss_pred cCCCCCCCCCcccccccc
Confidence 466666666555555444
No 322
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=22.78 E-value=65 Score=26.33 Aligned_cols=28 Identities=25% Similarity=0.621 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhCC---cEEEEeCcccccccCCC
Q psy1452 38 DINKLKQFIEKYN---KILVVTGAGISTESGIP 67 (268)
Q Consensus 38 ~l~~l~~~l~~a~---~ivi~tGAGiS~~sGiP 67 (268)
.-+++.+++++.+ .-||+++||+|+ +||
T Consensus 40 ~p~~l~~~~~~~~~~~~~viIa~AG~~a--~Lp 70 (150)
T PF00731_consen 40 TPERLLEFVKEYEARGADVIIAVAGMSA--ALP 70 (150)
T ss_dssp SHHHHHHHHHHTTTTTESEEEEEEESS----HH
T ss_pred CHHHHHHHHHHhccCCCEEEEEECCCcc--cch
Confidence 4556666666653 359999999974 444
No 323
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=22.72 E-value=60 Score=35.25 Aligned_cols=23 Identities=39% Similarity=0.427 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCc
Q psy1452 36 ESDINKLKQFIEKYNKILVVTGA 58 (268)
Q Consensus 36 ~~~l~~l~~~l~~a~~ivi~tGA 58 (268)
...++.+.++-++.+++|+.||.
T Consensus 715 ~~~~k~li~~g~~l~K~Vvatgn 737 (1444)
T COG2176 715 KEIIKKLIKLGKKLNKPVVATGN 737 (1444)
T ss_pred HHHHHHHHHHHHHhCCcEEEeCC
Confidence 45566666666778889998875
No 324
>PRK11827 hypothetical protein; Provisional
Probab=22.64 E-value=34 Score=23.53 Aligned_cols=14 Identities=36% Similarity=0.876 Sum_probs=11.7
Q ss_pred CCCCCCCCCeeccc
Q psy1452 212 VPQCPHCHGDLKPD 225 (268)
Q Consensus 212 iP~Cp~Cgg~lrP~ 225 (268)
+-.||.|+|.++.+
T Consensus 8 ILaCP~ckg~L~~~ 21 (60)
T PRK11827 8 IIACPVCNGKLWYN 21 (60)
T ss_pred heECCCCCCcCeEc
Confidence 67899999998754
No 325
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=22.44 E-value=1.6e+02 Score=27.54 Aligned_cols=11 Identities=36% Similarity=1.195 Sum_probs=8.9
Q ss_pred CCCCCCCCCee
Q psy1452 212 VPQCPHCHGDL 222 (268)
Q Consensus 212 iP~Cp~Cgg~l 222 (268)
-|.||.||+..
T Consensus 72 ~~~C~~cg~~~ 82 (415)
T COG5257 72 EPKCPNCGAET 82 (415)
T ss_pred CCCCCCCCCCc
Confidence 68999998754
No 326
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=22.38 E-value=1.3e+02 Score=28.45 Aligned_cols=36 Identities=17% Similarity=0.396 Sum_probs=29.5
Q ss_pred cCCCCCCCcccccCCCCCCCHHHHHHHHHHHHhCCc
Q psy1452 16 VPPDVTSRSISFIPKHKPVEESDINKLKQFIEKYNK 51 (268)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~a~~ 51 (268)
+|..-..|.+-++|.|.|++...|+++++-|-++..
T Consensus 395 q~~~p~~r~~~p~pnp~pidp~~leefkrrilesqr 430 (442)
T PF06637_consen 395 QPMTPGPRPVGPVPNPPPIDPASLEEFKRRILESQR 430 (442)
T ss_pred CCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhccC
Confidence 444445567778899999999999999999999987
No 327
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=22.32 E-value=55 Score=33.69 Aligned_cols=16 Identities=25% Similarity=0.783 Sum_probs=10.8
Q ss_pred CCCCCCCCeecccEEEeCC
Q psy1452 213 PQCPHCHGDLKPDIVFFGD 231 (268)
Q Consensus 213 P~Cp~Cgg~lrP~Vv~fgE 231 (268)
-.||+||+. +++.+|-
T Consensus 476 ~~Cp~Cgs~---~L~~~G~ 491 (730)
T COG1198 476 QSCPECGSE---HLRAVGP 491 (730)
T ss_pred CCCCCCCCC---eeEEecc
Confidence 469999998 4444443
No 328
>PF11576 DUF3236: Protein of unknown function (DUF3236); InterPro: IPR012019 This family of proteins with unknown function appears to be restricted to Methanobacteria. ; PDB: 3BRC_B.
Probab=22.26 E-value=87 Score=25.45 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhCCcEEEEeCccc
Q psy1452 37 SDINKLKQFIEKYNKILVVTGAGI 60 (268)
Q Consensus 37 ~~l~~l~~~l~~a~~ivi~tGAGi 60 (268)
..++.+++.|.+|++|||.|..+-
T Consensus 23 EEv~~Ir~~I~nakkIvV~t~N~k 46 (154)
T PF11576_consen 23 EEVEAIREYILNAKKIVVATNNEK 46 (154)
T ss_dssp HHHHHHHHHHHH-S-EEE----HH
T ss_pred HHHHHHHHHHhcCceEEEecCCch
Confidence 468899999999999999887763
No 329
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=21.99 E-value=43 Score=22.01 Aligned_cols=14 Identities=21% Similarity=0.539 Sum_probs=10.8
Q ss_pred CCCCCCCCC-eeccc
Q psy1452 212 VPQCPHCHG-DLKPD 225 (268)
Q Consensus 212 iP~Cp~Cgg-~lrP~ 225 (268)
...||.||. .|.++
T Consensus 20 ~~fCP~Cg~~~m~~~ 34 (50)
T PRK00432 20 NKFCPRCGSGFMAEH 34 (50)
T ss_pred cCcCcCCCcchhecc
Confidence 568999998 66654
No 330
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=21.96 E-value=49 Score=25.52 Aligned_cols=10 Identities=40% Similarity=1.487 Sum_probs=8.1
Q ss_pred CCCCCCCCCe
Q psy1452 212 VPQCPHCHGD 221 (268)
Q Consensus 212 iP~Cp~Cgg~ 221 (268)
+|.||+|+..
T Consensus 2 lp~CP~C~se 11 (109)
T TIGR00686 2 LPPCPKCNSE 11 (109)
T ss_pred CCcCCcCCCc
Confidence 6899999764
No 331
>PRK04351 hypothetical protein; Provisional
Probab=21.82 E-value=46 Score=27.15 Aligned_cols=16 Identities=13% Similarity=0.328 Sum_probs=11.9
Q ss_pred ccccceeeCCCCcccc
Q psy1452 157 GTAFRVMCLGCDYEID 172 (268)
Q Consensus 157 G~~~~~~C~~C~~~~~ 172 (268)
+.-+..+|.+|+..+.
T Consensus 108 ~~~y~Y~C~~Cg~~~~ 123 (149)
T PRK04351 108 KKNYLYECQSCGQQYL 123 (149)
T ss_pred CceEEEECCCCCCEee
Confidence 4456789999998663
No 332
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=21.74 E-value=78 Score=21.76 Aligned_cols=8 Identities=38% Similarity=1.099 Sum_probs=6.1
Q ss_pred CCCCCCCC
Q psy1452 212 VPQCPHCH 219 (268)
Q Consensus 212 iP~Cp~Cg 219 (268)
.-+||+||
T Consensus 50 ~Y~Cp~CG 57 (61)
T COG2888 50 PYRCPKCG 57 (61)
T ss_pred ceECCCcC
Confidence 45788887
No 333
>PRK05580 primosome assembly protein PriA; Validated
Probab=21.40 E-value=50 Score=33.66 Aligned_cols=16 Identities=25% Similarity=0.578 Sum_probs=12.1
Q ss_pred cccccceeeCCCCccc
Q psy1452 156 HGTAFRVMCLGCDYEI 171 (268)
Q Consensus 156 HG~~~~~~C~~C~~~~ 171 (268)
.|-.....|..|+...
T Consensus 376 rGy~~~~~C~~Cg~~~ 391 (679)
T PRK05580 376 RGYAPFLLCRDCGWVA 391 (679)
T ss_pred CCCCCceEhhhCcCcc
Confidence 5667788899888764
No 334
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=21.28 E-value=86 Score=30.63 Aligned_cols=20 Identities=45% Similarity=0.649 Sum_probs=16.2
Q ss_pred HHHHHHhhhCCEEEEEcccc
Q psy1452 239 EKIDHLVRSCDGVLVLGSSL 258 (268)
Q Consensus 239 ~~~~~~~~~~DlllviGTSl 258 (268)
..+.+.+++||++|++|+++
T Consensus 264 ~~~~~~l~~aDlvl~lG~~~ 283 (530)
T PRK07092 264 EKISALLDGHDLVLVIGAPV 283 (530)
T ss_pred HHHHHHHhhCCEEEEECCcc
Confidence 34556888999999999864
No 335
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=21.15 E-value=82 Score=28.64 Aligned_cols=20 Identities=30% Similarity=0.489 Sum_probs=15.2
Q ss_pred HHHHHHHhhhCCEEEEEccc
Q psy1452 238 MEKIDHLVRSCDGVLVLGSS 257 (268)
Q Consensus 238 ~~~~~~~~~~~DlllviGTS 257 (268)
-++..+.+.+||++||||+.
T Consensus 203 Q~Avk~la~~~Dl~iVVG~~ 222 (294)
T COG0761 203 QDAVKELAPEVDLVIVVGSK 222 (294)
T ss_pred HHHHHHHhhcCCEEEEECCC
Confidence 34455666789999999975
No 336
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=20.86 E-value=44 Score=32.03 Aligned_cols=12 Identities=33% Similarity=0.866 Sum_probs=9.6
Q ss_pred CCCCCCCCCeec
Q psy1452 212 VPQCPHCHGDLK 223 (268)
Q Consensus 212 iP~Cp~Cgg~lr 223 (268)
.-+||+||+.+.
T Consensus 30 ~a~CpRCg~~L~ 41 (419)
T PRK15103 30 KAACPRCGTTLT 41 (419)
T ss_pred eeECCCCCCCCc
Confidence 467999998873
No 337
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.74 E-value=43 Score=23.92 Aligned_cols=11 Identities=45% Similarity=1.165 Sum_probs=8.7
Q ss_pred CCCCCCCCCee
Q psy1452 212 VPQCPHCHGDL 222 (268)
Q Consensus 212 iP~Cp~Cgg~l 222 (268)
...||+|||.+
T Consensus 41 ~g~CPnCGGel 51 (84)
T COG3813 41 HGLCPNCGGEL 51 (84)
T ss_pred cCcCCCCCchh
Confidence 56899999854
No 338
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=20.57 E-value=80 Score=34.42 Aligned_cols=34 Identities=24% Similarity=0.511 Sum_probs=22.2
Q ss_pred CCCCCCCCeecccEEEeCCCCChHHHHHHHHHhhhCCEEEEE
Q psy1452 213 PQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVL 254 (268)
Q Consensus 213 P~Cp~Cgg~lrP~Vv~fgE~~~~~~~~~~~~~~~~~Dlllvi 254 (268)
+.||+|+..-.++ ..+.++...+.+.+||.|++-
T Consensus 693 ~~~p~~~~~~~~~--------k~~~~~~lr~l~~~~d~ViiA 726 (1171)
T TIGR01054 693 ESCPKCGSENIED--------SKSIIEILRELAHEVDEVFIG 726 (1171)
T ss_pred ccccccccccccc--------HHHHHHHHHHHHhcCCEEEEC
Confidence 4677776443221 235788888888999987653
No 339
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=20.36 E-value=81 Score=28.55 Aligned_cols=30 Identities=23% Similarity=0.185 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCcccccccC
Q psy1452 36 ESDINKLKQFIEKYNKILVVTGAGISTESG 65 (268)
Q Consensus 36 ~~~l~~l~~~l~~a~~ivi~tGAGiS~~sG 65 (268)
+.+|+++.++|.++.+-|++.|.|.|..++
T Consensus 33 ~~~l~~~~~~l~~a~~~I~i~G~G~S~~~a 62 (326)
T PRK10892 33 NQDFTLACEKMFWCKGKVVVMGMGKSGHIG 62 (326)
T ss_pred HHHHHHHHHHHHhcCCeEEEEeCcHhHHHH
Confidence 347999999999886668899999887655
No 340
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=20.27 E-value=86 Score=27.92 Aligned_cols=9 Identities=44% Similarity=1.497 Sum_probs=7.4
Q ss_pred CCCCCCCCC
Q psy1452 211 HVPQCPHCH 219 (268)
Q Consensus 211 ~iP~Cp~Cg 219 (268)
.+-+||+|.
T Consensus 176 tlARCPHCr 184 (256)
T PF09788_consen 176 TLARCPHCR 184 (256)
T ss_pred ccccCCCCc
Confidence 367999997
No 341
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=20.14 E-value=1.3e+02 Score=24.88 Aligned_cols=28 Identities=18% Similarity=0.326 Sum_probs=18.0
Q ss_pred HHHHHHHHHhCCcEEEEeCcccccccCCCC
Q psy1452 39 INKLKQFIEKYNKILVVTGAGISTESGIPD 68 (268)
Q Consensus 39 l~~l~~~l~~a~~ivi~tGAGiS~~sGiP~ 68 (268)
+.++.+-.++.+.-||+++||++ ++||.
T Consensus 42 ~~~~~~~a~~~g~~viIa~AG~a--a~Lpg 69 (156)
T TIGR01162 42 MLEYAKEAEERGIKVIIAGAGGA--AHLPG 69 (156)
T ss_pred HHHHHHHHHHCCCeEEEEeCCcc--chhHH
Confidence 34443333444578999999997 45774
No 342
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.03 E-value=21 Score=28.34 Aligned_cols=38 Identities=18% Similarity=0.149 Sum_probs=24.0
Q ss_pred cEEEeccCcchhhhhcCCceEEecccccceeeCCCCcccc
Q psy1452 133 SYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEID 172 (268)
Q Consensus 133 ~~iiTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~ 172 (268)
-+++||-.|.-++.- +....--|.....+|+.|....-
T Consensus 13 gh~attaadq~pel~--eafcskcgeati~qcp~csasir 50 (160)
T COG4306 13 GHVATTAADQSPELM--EAFCSKCGEATITQCPICSASIR 50 (160)
T ss_pred CceeeccccCCHHHH--HHHHhhhchHHHhcCCccCCccc
Confidence 367888888766653 22222236677778888876553
Done!