Query psy1452
Match_columns 268
No_of_seqs 143 out of 1166
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 22:00:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1452.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1452hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yc5_A NAD-dependent deacetyla 100.0 6.4E-58 2.2E-62 403.1 18.9 199 38-267 2-200 (246)
2 1ma3_A SIR2-AF2, transcription 100.0 1.5E-57 5.2E-62 402.2 17.3 201 35-267 1-203 (253)
3 3riy_A NAD-dependent deacetyla 100.0 3.7E-57 1.3E-61 403.5 14.7 218 36-267 8-232 (273)
4 3u31_A SIR2A, transcriptional 100.0 1.2E-56 4E-61 402.3 15.5 207 32-267 28-236 (290)
5 1m2k_A Silent information regu 100.0 2.9E-56 9.8E-61 393.2 14.6 194 40-267 3-197 (249)
6 3glr_A NAD-dependent deacetyla 100.0 1.3E-55 4.4E-60 394.1 15.8 198 37-267 9-217 (285)
7 1q1a_A HST2 protein; ternary c 100.0 1.2E-54 4.1E-59 390.5 19.2 205 34-267 3-231 (289)
8 1q14_A HST2 protein; histone d 100.0 4.5E-54 1.5E-58 395.9 18.5 210 29-267 6-239 (361)
9 1j8f_A SIRT2, sirtuin 2, isofo 100.0 8.9E-54 3E-58 389.5 18.9 220 6-267 8-240 (323)
10 4iao_A NAD-dependent histone d 100.0 1.6E-52 5.5E-57 393.5 18.0 223 37-267 172-413 (492)
11 2hjh_A NAD-dependent histone d 100.0 2.1E-52 7.3E-57 385.1 17.3 223 37-267 34-275 (354)
12 1s5p_A NAD-dependent deacetyla 100.0 4.2E-53 1.5E-57 370.0 11.0 185 49-267 1-187 (235)
13 3k35_A NAD-dependent deacetyla 100.0 4E-50 1.4E-54 362.3 13.9 196 34-267 29-226 (318)
14 3pki_A NAD-dependent deacetyla 100.0 5.4E-50 1.9E-54 364.4 14.3 196 34-267 29-226 (355)
15 2k5c_A Uncharacterized protein 86.6 0.51 1.7E-05 33.4 3.0 74 160-247 7-80 (95)
16 2lcq_A Putative toxin VAPC6; P 85.1 0.26 9.1E-06 39.4 1.1 12 161-172 132-143 (165)
17 3cf4_G Acetyl-COA decarboxylas 81.3 1.3 4.5E-05 35.4 3.9 33 29-61 14-46 (170)
18 1lko_A Rubrerythrin all-iron(I 80.6 0.57 1.9E-05 38.6 1.5 14 159-172 153-166 (191)
19 3na7_A HP0958; flagellar bioge 76.9 1.5 5E-05 37.7 3.0 42 150-222 191-232 (256)
20 2kdx_A HYPA, hydrogenase/ureas 76.6 0.84 2.9E-05 34.5 1.2 19 154-172 66-84 (119)
21 1twf_L ABC10-alpha, DNA-direct 66.7 2.6 8.9E-05 28.9 1.8 13 160-172 27-39 (70)
22 1yuz_A Nigerythrin; rubrythrin 64.2 2.9 9.8E-05 34.7 1.9 13 159-171 169-181 (202)
23 1pno_A NAD(P) transhydrogenase 63.4 1.6 5.4E-05 35.2 0.1 41 225-265 73-116 (180)
24 3a43_A HYPD, hydrogenase nicke 61.3 4.4 0.00015 31.5 2.4 23 152-174 61-83 (139)
25 6rxn_A Rubredoxin; electron tr 60.3 4.7 0.00016 25.3 1.9 14 159-172 2-15 (46)
26 4ayb_P DNA-directed RNA polyme 60.0 3.3 0.00011 26.0 1.2 13 161-173 3-15 (48)
27 2fsv_C NAD(P) transhydrogenase 59.5 1.7 5.9E-05 35.8 -0.3 42 224-265 95-139 (203)
28 4rxn_A Rubredoxin; electron tr 57.6 14 0.00048 23.9 3.9 13 160-172 2-14 (54)
29 1djl_A Transhydrogenase DIII; 57.2 1.7 5.8E-05 35.9 -0.7 42 224-265 94-138 (207)
30 3pwf_A Rubrerythrin; non heme 56.7 4 0.00014 32.9 1.4 13 160-172 137-149 (170)
31 1dx8_A Rubredoxin; electron tr 56.3 15 0.0005 25.1 4.1 16 157-172 3-18 (70)
32 2kn9_A Rubredoxin; metalloprot 55.2 12 0.00042 26.3 3.6 14 159-172 25-38 (81)
33 2v3b_B Rubredoxin 2, rubredoxi 54.1 15 0.00053 23.7 3.7 13 160-172 2-14 (55)
34 1e8j_A Rubredoxin; iron-sulfur 53.3 14 0.00047 23.7 3.3 13 160-172 2-14 (52)
35 3h0g_L DNA-directed RNA polyme 52.2 8.4 0.00029 25.8 2.2 11 161-171 21-31 (63)
36 1d4o_A NADP(H) transhydrogenas 51.8 6.1 0.00021 31.9 1.8 29 237-265 87-115 (184)
37 1e2b_A Enzyme IIB-cellobiose; 50.7 4.4 0.00015 29.8 0.7 14 50-63 4-17 (106)
38 2jrp_A Putative cytoplasmic pr 49.5 3.8 0.00013 29.0 0.2 11 161-171 18-28 (81)
39 1s24_A Rubredoxin 2; electron 47.7 21 0.00072 25.4 3.9 14 159-172 33-46 (87)
40 2gnr_A Conserved hypothetical 44.0 6.9 0.00024 30.6 0.9 16 156-171 42-57 (145)
41 2gmg_A Hypothetical protein PF 43.6 8 0.00027 28.6 1.2 12 160-171 66-77 (105)
42 2jne_A Hypothetical protein YF 43.3 6.2 0.00021 28.8 0.5 12 212-223 61-72 (101)
43 2bru_C NAD(P) transhydrogenase 42.8 5.7 0.0002 32.1 0.3 26 240-265 98-123 (186)
44 3irb_A Uncharacterized protein 40.3 8.5 0.00029 30.0 0.9 14 158-171 44-57 (145)
45 1yk4_A Rubredoxin, RD; electro 39.2 27 0.00091 22.3 3.0 12 161-172 2-13 (52)
46 2epq_A POZ-, at HOOK-, and zin 38.8 16 0.00054 21.1 1.8 20 155-174 4-23 (45)
47 4feg_A Pyruvate oxidase; carba 38.6 30 0.001 33.0 4.7 29 33-61 196-224 (603)
48 3eya_A Pyruvate dehydrogenase 38.4 33 0.0011 32.2 4.9 28 34-61 186-213 (549)
49 3dnf_A ISPH, LYTB, 4-hydroxy-3 38.2 26 0.00087 30.8 3.7 35 224-258 184-220 (297)
50 3ec1_A YQEH GTPase; atnos1, at 37.2 20 0.00068 32.1 3.0 42 212-254 36-78 (369)
51 3fxa_A SIS domain protein; str 37.2 24 0.00083 28.1 3.3 31 34-64 29-59 (201)
52 3cf4_G Acetyl-COA decarboxylas 34.7 13 0.00043 29.4 1.1 16 243-258 103-118 (170)
53 1tvm_A PTS system, galactitol- 34.0 10 0.00035 28.0 0.4 14 50-63 22-35 (113)
54 3h2y_A GTPase family protein; 33.9 28 0.00096 31.1 3.4 38 212-254 34-76 (368)
55 2c31_A Oxalyl-COA decarboxylas 33.3 35 0.0012 32.1 4.2 28 34-61 198-225 (568)
56 1ytl_A Acetyl-COA decarboxylas 33.2 14 0.00047 29.7 1.1 23 38-61 23-46 (174)
57 3nbm_A PTS system, lactose-spe 32.5 15 0.0005 27.1 1.1 15 49-63 6-20 (108)
58 3eyy_A Putative iron uptake re 32.4 27 0.00092 26.8 2.7 52 113-173 49-102 (145)
59 3mwm_A ZUR, putative metal upt 32.4 40 0.0014 25.5 3.7 55 113-173 45-99 (139)
60 3sho_A Transcriptional regulat 32.3 45 0.0015 26.0 4.1 31 34-65 24-54 (187)
61 1n5g_A 38-MER of DNA polymeras 31.8 8.9 0.0003 22.8 -0.2 14 211-224 23-37 (38)
62 2ywx_A Phosphoribosylaminoimid 30.8 23 0.00078 28.1 2.0 29 37-67 38-66 (157)
63 3kzf_A Carbamate kinase; argin 30.7 17 0.00056 32.3 1.3 53 13-71 152-204 (317)
64 2xhz_A KDSD, YRBH, arabinose 5 30.7 30 0.001 26.9 2.8 28 38-65 37-64 (183)
65 2xig_A Ferric uptake regulatio 30.6 36 0.0012 26.2 3.2 52 113-173 58-111 (150)
66 1ozh_A ALS, acetolactate synth 30.2 42 0.0014 31.7 4.1 28 34-61 192-219 (566)
67 1ytl_A Acetyl-COA decarboxylas 30.1 21 0.00071 28.6 1.7 27 35-62 47-73 (174)
68 2yy8_A ATRM56, UPF0106 protein 30.0 25 0.00085 28.8 2.1 34 223-257 77-111 (201)
69 1m3s_A Hypothetical protein YC 29.3 40 0.0014 26.3 3.3 31 33-64 21-51 (186)
70 1ybh_A Acetolactate synthase, 29.0 47 0.0016 31.4 4.3 27 35-61 200-226 (590)
71 1vkr_A Mannitol-specific PTS s 28.7 15 0.0005 27.8 0.5 17 48-64 12-28 (125)
72 2vbf_A Branched-chain alpha-ke 28.3 41 0.0014 31.6 3.7 28 36-63 215-242 (570)
73 1twd_A Copper homeostasis prot 28.1 30 0.001 29.6 2.4 30 34-63 153-182 (256)
74 2q28_A Oxalyl-COA decarboxylas 27.1 35 0.0012 32.1 3.0 28 34-61 196-223 (564)
75 2l2q_A PTS system, cellobiose- 27.0 20 0.00069 26.1 1.0 13 51-63 6-18 (109)
76 2uz1_A Benzaldehyde lyase; thi 26.3 48 0.0016 31.1 3.8 28 34-61 189-216 (563)
77 3j20_Y 30S ribosomal protein S 26.3 23 0.00077 22.4 1.0 14 212-225 19-34 (50)
78 2x7j_A 2-succinyl-5-enolpyruvy 26.1 30 0.001 33.0 2.3 37 35-71 229-276 (604)
79 1mzb_A Ferric uptake regulatio 26.0 38 0.0013 25.4 2.5 52 113-173 50-103 (136)
80 1t9b_A Acetolactate synthase, 25.9 54 0.0018 31.8 4.1 26 36-61 276-301 (677)
81 2fiy_A Protein FDHE homolog; F 25.8 42 0.0014 29.5 3.0 17 156-172 203-219 (309)
82 3j21_g 50S ribosomal protein L 25.8 42 0.0014 21.3 2.2 13 212-224 28-41 (51)
83 2f9y_B Acetyl-coenzyme A carbo 25.7 34 0.0012 29.9 2.4 15 161-175 24-38 (304)
84 1ovm_A Indole-3-pyruvate decar 25.0 48 0.0016 31.0 3.5 23 240-262 269-291 (552)
85 1q6z_A BFD, BFDC, benzoylforma 24.8 54 0.0018 30.5 3.8 28 34-61 185-212 (528)
86 3hww_A 2-succinyl-5-enolpyruvy 24.8 41 0.0014 31.6 3.0 20 240-259 271-290 (556)
87 3czc_A RMPB; alpha/beta sandwi 24.2 19 0.00063 26.4 0.3 14 50-63 19-32 (110)
88 2vk8_A Pyruvate decarboxylase 24.1 52 0.0018 30.9 3.5 21 240-260 271-291 (563)
89 1qxf_A GR2, 30S ribosomal prot 23.9 30 0.001 23.2 1.3 15 157-171 3-17 (66)
90 1q6z_A BFD, BFDC, benzoylforma 23.7 57 0.002 30.3 3.8 22 240-261 259-280 (528)
91 2fe3_A Peroxide operon regulat 23.7 56 0.0019 24.8 3.1 51 113-172 53-104 (145)
92 2iht_A Carboxyethylarginine sy 23.6 49 0.0017 31.2 3.3 28 34-61 201-228 (573)
93 2bru_C NAD(P) transhydrogenase 23.1 35 0.0012 27.5 1.7 34 30-63 11-44 (186)
94 2nxw_A Phenyl-3-pyruvate decar 23.0 60 0.002 30.5 3.8 30 239-268 281-310 (565)
95 1v5e_A Pyruvate oxidase; oxido 23.0 69 0.0024 30.3 4.2 27 34-60 190-216 (590)
96 3szu_A ISPH, 4-hydroxy-3-methy 22.9 61 0.0021 28.8 3.5 21 237-257 215-235 (328)
97 1vim_A Hypothetical protein AF 22.8 54 0.0019 26.1 3.0 28 35-63 33-60 (200)
98 3brc_A Conserved protein of un 22.8 56 0.0019 25.5 2.8 25 36-60 23-47 (156)
99 2w57_A Ferric uptake regulatio 22.7 58 0.002 24.9 3.0 52 113-173 49-102 (150)
100 2vbi_A Pyruvate decarboxylase; 22.5 62 0.0021 30.4 3.7 26 36-61 196-221 (566)
101 3eya_A Pyruvate dehydrogenase 22.5 50 0.0017 30.9 3.1 20 241-260 259-278 (549)
102 1ovm_A Indole-3-pyruvate decar 22.4 55 0.0019 30.6 3.4 26 36-61 196-221 (552)
103 2akl_A PHNA-like protein PA012 22.3 33 0.0011 26.3 1.4 11 211-221 26-36 (138)
104 4feg_A Pyruvate oxidase; carba 22.0 52 0.0018 31.3 3.1 20 241-260 270-289 (603)
105 2aus_D NOP10, ribosome biogene 21.9 44 0.0015 22.0 1.8 10 213-222 18-27 (60)
106 2wvg_A PDC, pyruvate decarboxy 21.8 60 0.002 30.5 3.5 26 36-61 196-221 (568)
107 2bdq_A Copper homeostasis prot 21.7 55 0.0019 27.4 2.8 29 35-63 161-190 (224)
108 1pft_A TFIIB, PFTFIIBN; N-term 21.7 37 0.0013 20.9 1.4 9 212-220 5-13 (50)
109 2yva_A DNAA initiator-associat 21.5 62 0.0021 25.4 3.1 27 37-64 29-55 (196)
110 1zfo_A LAsp-1; LIM domain, zin 21.5 32 0.0011 19.1 0.9 14 212-225 3-16 (31)
111 2vk8_A Pyruvate decarboxylase 21.5 56 0.0019 30.6 3.2 26 36-61 198-223 (563)
112 2kre_A Ubiquitin conjugation f 21.4 83 0.0028 22.4 3.4 13 212-224 63-75 (100)
113 2vbf_A Branched-chain alpha-ke 21.3 68 0.0023 30.1 3.8 22 240-261 288-309 (570)
114 1jeo_A MJ1247, hypothetical pr 21.1 56 0.0019 25.2 2.7 29 35-64 26-54 (180)
115 4ets_A Ferric uptake regulatio 20.8 42 0.0014 26.2 1.9 52 113-173 66-119 (162)
116 2pan_A Glyoxylate carboligase; 20.6 85 0.0029 29.8 4.3 27 35-61 212-238 (616)
117 1wgm_A Ubiquitin conjugation f 20.5 1.2E+02 0.0041 21.4 4.2 13 212-224 57-69 (98)
118 2kr4_A Ubiquitin conjugation f 20.5 1E+02 0.0036 20.9 3.7 14 212-225 48-61 (85)
119 2vbi_A Pyruvate decarboxylase; 20.4 61 0.0021 30.5 3.2 21 241-261 270-290 (566)
120 1l8d_A DNA double-strand break 20.2 31 0.001 25.1 0.8 13 212-224 47-59 (112)
No 1
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=100.00 E-value=6.4e-58 Score=403.11 Aligned_cols=199 Identities=31% Similarity=0.562 Sum_probs=167.6
Q ss_pred HHHHHHHHHHhCCcEEEEeCcccccccCCCCccCCCCccccccCCCCCChHHHhhChHHHHHHHHHhhcCccccCCCCCC
Q psy1452 38 DINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRVRIRYWARNFVGWPRFSSFQPN 117 (268)
Q Consensus 38 ~l~~l~~~l~~a~~ivi~tGAGiS~~sGiP~fr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~ 117 (268)
++++++++|++|++|||+||||||++|||||||+++ |+|.++.....+...|..+|+.+|+||.+.+. .+.+++||
T Consensus 2 ~i~~l~~~l~~a~~ivv~tGAGiS~~SGIpdfR~~~-Glw~~~~~~~~~~~~f~~~p~~~~~~~~~~~~---~~~~~~Pn 77 (246)
T 1yc5_A 2 KMKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPN-GIYKKYSQNVFDIDFFYSHPEEFYRFAKEGIF---PMLQAKPN 77 (246)
T ss_dssp CCHHHHHHHHHCSSEEEEECGGGTGGGTCCCC------------CCTTBHHHHHHCHHHHHHHHHHHTG---GGGGCCCC
T ss_pred hHHHHHHHHHhCCCEEEEECceeehhhCCCCccCCC-cccccCCCceecHHHHhhCHHHHHHHHHHHHH---HhccCCCC
Confidence 367899999999999999999999999999999998 99997544445677889999999999987753 34589999
Q ss_pred HHHHHHHHhHhcCCCcEEEeccCcchhhhhcCCceEEecccccceeeCCCCcccchhhHHHHHHhhCCchhhhcccCCCC
Q psy1452 118 ANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPD 197 (268)
Q Consensus 118 ~~H~~L~~L~~~~~~~~iiTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 197 (268)
.+|++|++|+++|++.+|||||||+||++||.++|+|+||++...+|+.|++.++..++.+.+
T Consensus 78 ~~H~~La~L~~~g~~~~viTQNvD~Lh~~AG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~----------------- 140 (246)
T 1yc5_A 78 LAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELHGNVEEYYCVRCEKKYTVEDVIKKL----------------- 140 (246)
T ss_dssp HHHHHHHHHHHTTSCSEEEECCCSCHHHHTTCSCEEETTEEEEEEEETTTCCEEEHHHHHHHT-----------------
T ss_pred HHHHHHHHHHhcCCCceEEeccccchHhHcCCCcEEEecCccceeEcCCCCCCCcHHHHHHHh-----------------
Confidence 999999999999999999999999999999999999999999999999999987654432111
Q ss_pred CCcccchhhhhcCCCCCCCCCCCeecccEEEeCCCCChHHHHHHHHHhhhCCEEEEEccccccccccccC
Q psy1452 198 GDVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVSFSKSML 267 (268)
Q Consensus 198 ~~~~~~~~~~~~~~iP~Cp~Cgg~lrP~Vv~fgE~~~~~~~~~~~~~~~~~DlllviGTSl~V~p~~~~~ 267 (268)
....+|+||.|||.|||+||||||++|++.++.+.+++++||++|||||||.|+|+++|+
T Consensus 141 ----------~~~~~p~C~~Cgg~lrP~vv~FgE~lp~~~~~~a~~~~~~adl~lviGTSl~V~P~~~l~ 200 (246)
T 1yc5_A 141 ----------ESSDVPLCDDCNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPAAELP 200 (246)
T ss_dssp ----------TTCSSCBCTTTCCBEEEEECCBTSBCCHHHHHHHHHHHHHCSEEEEESCCSCEETGGGHH
T ss_pred ----------ccCCCCCCCCCCCccCcceEECCCCCCHHHHHHHHHHHhcCCEEEEECCCCcchhHHHHH
Confidence 111489999999999999999999999999999999999999999999999999999874
No 2
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=100.00 E-value=1.5e-57 Score=402.16 Aligned_cols=201 Identities=32% Similarity=0.590 Sum_probs=167.9
Q ss_pred CHHHHHHHHHHHHhCCcEEEEeCcccccccCCCCccCCCCccccccCC-CCCChHHHhhChHHHHHHHHHhhcCccccCC
Q psy1452 35 EESDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDK-RPVQFQDFLKSRRVRIRYWARNFVGWPRFSS 113 (268)
Q Consensus 35 ~~~~l~~l~~~l~~a~~ivi~tGAGiS~~sGiP~fr~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (268)
|++++++++++|++|++|||+||||||++|||||||+.+ |+|.++.. ...+...|..+|+.+|.||.+.+. .+.
T Consensus 1 m~~~i~~l~~~l~~a~~ivv~tGAGiS~~SGIPdfR~~~-Glw~~~~~~~~~~~~~f~~~p~~~~~f~~~~~~---~~~- 75 (253)
T 1ma3_A 1 MEDEIRKAAEILAKSKHAVVFTGAGISAESGIPTFRGED-GLWRKYDPEEVASISGFKRNPRAFWEFSMEMKD---KLF- 75 (253)
T ss_dssp CHHHHHHHHHHHHHCSSEEEEECGGGSCC-----------CCSCSSCHHHHTBHHHHTTCHHHHHHHHHHTHH---HHT-
T ss_pred ChHHHHHHHHHHHhCCcEEEEEchhhhHhhCCCCcCCCC-cccccCChhheecHHHHhcCHHHHHHHHHHHHH---hcc-
Confidence 457899999999999999999999999999999999998 99997432 225667788999999999987753 334
Q ss_pred CCCCHHHHHHHHhHhcCCCcEEEeccCcchhhhhcCCceEEecccccceeeCCCCcccchhhHHHHHHhhCCchhhhccc
Q psy1452 114 FQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQE 193 (268)
Q Consensus 114 ~~P~~~H~~L~~L~~~~~~~~iiTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~~~ 193 (268)
++||.+|++|++|+++|++.+||||||||||++||.++|+|+||++...+|+.|++.++..++.+.
T Consensus 76 ~~Pn~~H~~La~L~~~g~~~~viTQNvD~Lh~~AG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~-------------- 141 (253)
T 1ma3_A 76 AEPNPAHYAIAELERMGIVKAVITQNIDMLHQRAGSRRVLELHGSMDKLDCLDCHETYDWSEFVED-------------- 141 (253)
T ss_dssp CCCCHHHHHHHHHHHTTSEEEEEESCCSCHHHHHTCCSEEETTEEEEEEEETTTCCEEEGGGTHHH--------------
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEeccccccHhHhCCCCEEEeCCCcCeeeeCCCCCcCcHHHHHHH--------------
Confidence 999999999999999999999999999999999999999999999999999999998765443211
Q ss_pred CCCCCCcccchhhhhcCCCCCCCCCCC-eecccEEEeCCCCChHHHHHHHHHhhhCCEEEEEccccccccccccC
Q psy1452 194 MRPDGDVEMSEETISKFHVPQCPHCHG-DLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVSFSKSML 267 (268)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~iP~Cp~Cgg-~lrP~Vv~fgE~~~~~~~~~~~~~~~~~DlllviGTSl~V~p~~~~~ 267 (268)
+....+|+||.||| .|||+||||||++|++.++.+.+++++||++|||||||.|+|+++|+
T Consensus 142 -------------~~~~~~p~C~~Cgg~~lrP~Vv~FgE~lp~~~~~~a~~~~~~adl~lviGTSl~V~P~~~l~ 203 (253)
T 1ma3_A 142 -------------FNKGEIPRCRKCGSYYVKPRVVLFGEPLPQRTLFEAIEEAKHCDAFMVVGSSLVVYPAAELP 203 (253)
T ss_dssp -------------HHTTCCCCCTTTCCSCEEEEECCBTSBCCHHHHHHHHHHHHHCSEEEEESCCSCEETGGGHH
T ss_pred -------------hccCCCCCCCCCCCccccceEEEeCCCCCHHHHHHHHHHHHhCCEEEEECCCceeccHHHHH
Confidence 11234899999999 99999999999999999999999999999999999999999999874
No 3
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} SCOP: c.31.1.5 PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A*
Probab=100.00 E-value=3.7e-57 Score=403.46 Aligned_cols=218 Identities=29% Similarity=0.542 Sum_probs=178.2
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCcccccccCCCCccCCCCccccccCCC-CCChHHHhhChHHHHHHHHHhhcCccccCCC
Q psy1452 36 ESDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKR-PVQFQDFLKSRRVRIRYWARNFVGWPRFSSF 114 (268)
Q Consensus 36 ~~~l~~l~~~l~~a~~ivi~tGAGiS~~sGiP~fr~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (268)
+.++++++++|++|++|||+||||||++|||||||+.+ |+|.++... ..+...|..+|+.+|.||.+... .+.++
T Consensus 8 ~~~i~~l~~~l~~a~~ivvlTGAGiSt~SGIPdFR~~~-Glw~~~~~~~l~~~~~f~~~p~~~w~fy~~~~~---~~~~~ 83 (273)
T 3riy_A 8 SSSMADFRKFFAKAKHIVIISGAGVSAESGVPTFRGAG-GYWRKWQAQDLATPLAFAHNPSRVWEFYHYRRE---VMGSK 83 (273)
T ss_dssp BCCHHHHHHHHHHCSEEEEEECGGGTGGGTCCCSSSGG-GEETTEEHHHHSSHHHHHHCHHHHHHHHHHHHH---HHTTC
T ss_pred HHHHHHHHHHHHhCCcEEEEECcccchhhCCCcccccc-chhhhCChhhcCCHHHHhhCHHHHHHHHHHHHH---HhhhC
Confidence 34699999999999999999999999999999999998 999875422 24566788999999999975432 23588
Q ss_pred CCCHHHHHHHHhHh----cCCCcEEEeccCcchhhhhcCCceEEecccccceeeCCCCcccchhhHHHHHHhhCCchhhh
Q psy1452 115 QPNANHYALKQMED----NEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIE 190 (268)
Q Consensus 115 ~P~~~H~~L~~L~~----~~~~~~iiTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~ 190 (268)
+||.+|++|++|++ +|++.+||||||||||++||.++|+|+||++...+|++|++.+... .+|.|...
T Consensus 84 ~Pn~~H~~La~Le~~~~~~g~~~~viTQNiDgLh~~AG~~~vielHG~~~~~~C~~C~~~~~~~--------~~p~~~~~ 155 (273)
T 3riy_A 84 EPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTKNLLEIHGSLFKTRCTSCGVVAENY--------KSPICPAL 155 (273)
T ss_dssp CCCHHHHHHHHHHHHHHTTTCEEEEEESCCSCHHHHHTCCSEEETTEEEEEEEETTTCCEEECC--------CSSSSGGG
T ss_pred CCCHHHHHHHHHHHhhhhcCceeEEEEecccchHhhcCCCCEEEecCcCCeeEcCCCCCccccc--------ccchhhhh
Confidence 99999999999984 5899999999999999999999999999999999999999886432 12333222
Q ss_pred cccCCCCCCcccchhhhhcCCCCCC--CCCCCeecccEEEeCCCCChHHHHHHHHHhhhCCEEEEEccccccccccccC
Q psy1452 191 SQEMRPDGDVEMSEETISKFHVPQC--PHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVSFSKSML 267 (268)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~iP~C--p~Cgg~lrP~Vv~fgE~~~~~~~~~~~~~~~~~DlllviGTSl~V~p~~~~~ 267 (268)
.....++.+.. ...+....+|+| |.|||.|||+||||||++|++.++.+.+++++||++|||||||+|+|+++|+
T Consensus 156 ~~~~~~~~~~~--~~~~~~~~~P~C~~~~Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~aDl~lviGTSl~V~Paa~l~ 232 (273)
T 3riy_A 156 SGKGAPEPGTQ--DASIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVYPAAMFA 232 (273)
T ss_dssp TTCCCCSTTCC--CCCCCGGGSCBCCGGGCCCBEEEEECCTTSBCCHHHHHHHHHHHHHCSEEEEESCCSCEETGGGHH
T ss_pred hcccCCccccc--ccccccCCCCCCCCCCCCCeeCCcEEEeCCcCCHHHHHHHHHHHhcCCEEEEEeeCCcchhHHHhH
Confidence 22222222211 111122348999 7899999999999999999999999999999999999999999999999874
No 4
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Probab=100.00 E-value=1.2e-56 Score=402.29 Aligned_cols=207 Identities=29% Similarity=0.535 Sum_probs=176.5
Q ss_pred CCCCHHHHHHHHHHHHhCCcEEEEeCcccccccCCCCccC-CCCccccccCCC-CCChHHHhhChHHHHHHHHHhhcCcc
Q psy1452 32 KPVEESDINKLKQFIEKYNKILVVTGAGISTESGIPDYRS-EGVGLYARSDKR-PVQFQDFLKSRRVRIRYWARNFVGWP 109 (268)
Q Consensus 32 ~~~~~~~l~~l~~~l~~a~~ivi~tGAGiS~~sGiP~fr~-~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (268)
+...+.++++++++|++|++|||+||||||++|||||||+ .+ |+|..+... -.+...|..+|+.+|+||.+...
T Consensus 28 ~~~~~~~i~~l~~~i~~a~~ivvlTGAGiSt~SGIPdFR~~~~-Glw~~~~p~~~~~~~~f~~~p~~~w~~~~~~~~--- 103 (290)
T 3u31_A 28 KDTQSITLEELAKIIKKCKHVVALTGSGTSAESNIPSFRGSSN-SIWSKYDPRIYGTIWGFWKYPEKIWEVIRDISS--- 103 (290)
T ss_dssp CCCEEECHHHHHHHHHTCSSEEEEECGGGTGGGTCCSCTTCTT-SGGGGSCHHHHTBHHHHHHCHHHHHHHHHHHHH---
T ss_pred cchhHHHHHHHHHHHHhCCCEEEEeCCccccccCCcccccccc-chhhcCCHHHhhCHHhhhhCHHHHHHHHHHHhh---
Confidence 4455678999999999999999999999999999999999 56 999875321 13456778999999999976653
Q ss_pred ccCCCCCCHHHHHHHHhHhcCCCcEEEeccCcchhhhhcCCceEEecccccceeeCCCCcccchhhHHHHHHhhCCchhh
Q psy1452 110 RFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMI 189 (268)
Q Consensus 110 ~~~~~~P~~~H~~L~~L~~~~~~~~iiTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~ 189 (268)
. .+++||.+|++|++|++.|++.+|||||||+||++||.++|+|+||++...+|+.|++.++..+.. .
T Consensus 104 ~-~~a~Pn~~H~aLa~Le~~g~~~~viTQNVDgLh~rAG~~~vielHGs~~~~~C~~C~~~~~~~~~~----------~- 171 (290)
T 3u31_A 104 D-YEIEINNGHVALSTLESLGYLKSVVTQNVDGLHEASGNTKVISLHGNVFEAVCCTCNKIVKLNKIM----------L- 171 (290)
T ss_dssp H-SCCCCCHHHHHHHHHHHTTCEEEEEESCCSCHHHHTTCSCEEETTEEEEEEEETTTCCEEECCTGG----------G-
T ss_pred h-ccCCCCHHHHHHHHHHHcCCCceEEEechHHHHHHcCCCcEEEecCCcCcceeCCCCCcCChhHhh----------h-
Confidence 2 588999999999999999999999999999999999999999999999999999999887543210 0
Q ss_pred hcccCCCCCCcccchhhhhcCCCCCCCCCCCeecccEEEeCCCCChHHHHHHHHHhhhCCEEEEEccccccccccccC
Q psy1452 190 ESQEMRPDGDVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVSFSKSML 267 (268)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~iP~Cp~Cgg~lrP~Vv~fgE~~~~~~~~~~~~~~~~~DlllviGTSl~V~p~~~~~ 267 (268)
. + .+.+....+|+|| |||.|||+||||||.+|++.++.+.+++++||++|||||||+|+|+++|+
T Consensus 172 -----~---~----~~~~~~~~~P~C~-Cgg~lrPdVV~FGE~lp~~~~~~a~~~~~~aDllLviGTSl~V~Paa~l~ 236 (290)
T 3u31_A 172 -----Q---K----TSHFMHQLPPECP-CGGIFKPNIILFGEVVSSDLLKEAEEEIAKCDLLLVIGTSSTVSTATNLC 236 (290)
T ss_dssp -----S---T----TSSTTTSSSCBCT-TSCBEEEEECCBTSBCCHHHHHHHHHHHHHCSEEEEESCCSCSHHHHHHH
T ss_pred -----c---c----cccccccCCCCCC-CCCEECCeEEEcCCCCCHHHHHHHHHHHhcCCEEEEECcCCcchhHHHHH
Confidence 0 0 0111223489999 99999999999999999999999999999999999999999999998874
No 5
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=100.00 E-value=2.9e-56 Score=393.17 Aligned_cols=194 Identities=31% Similarity=0.526 Sum_probs=171.4
Q ss_pred HHHHHHHHhCCcEEEEeCcccccccCCCCccCCCCccccccCC-CCCChHHHhhChHHHHHHHHHhhcCccccCCCCCCH
Q psy1452 40 NKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDK-RPVQFQDFLKSRRVRIRYWARNFVGWPRFSSFQPNA 118 (268)
Q Consensus 40 ~~l~~~l~~a~~ivi~tGAGiS~~sGiP~fr~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ 118 (268)
++++++|++|++|||+||||||++|||||||+.+ |+|.++.. ...+...|..+|+.+|.||.+.+. .+.+++||.
T Consensus 3 ~~l~~~i~~a~~ivvltGAGiS~~SGIPdfR~~~-Glw~~~~~~~~~~~~~f~~~p~~~w~~~~~~~~---~~~~~~Pn~ 78 (249)
T 1m2k_A 3 EKLLKTIAESKYLVALTGAGVSAESGIPTFRGKD-GLWNRYRPEELANPQAFAKDPEKVWKWYAWRME---KVFNAQPNK 78 (249)
T ss_dssp HHHHHHHHTCSSEEEEECGGGGGGGTCCCSSSTT-CHHHHSCHHHHSSHHHHHHCHHHHHHHHHHHHH---HHHHCCCCH
T ss_pred HHHHHHHHhCCCEEEEECchhhhhhCCCCccCCC-cCccCCCHHhcccHHHHhcCHHHHHHHHHHHHH---HhCcCCCCH
Confidence 6789999999999999999999999999999998 99997432 225677788999999999986653 235789999
Q ss_pred HHHHHHHhHhcCCCcEEEeccCcchhhhhcCCceEEecccccceeeCCCCcccchhhHHHHHHhhCCchhhhcccCCCCC
Q psy1452 119 NHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDG 198 (268)
Q Consensus 119 ~H~~L~~L~~~~~~~~iiTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 198 (268)
+|++|++|+++|++.+||||||||||++||.++|+|+||++...+|+.|++.++..+
T Consensus 79 ~H~~La~L~~~g~~~~viTQNiDgLh~~AG~~~v~elHG~~~~~~C~~C~~~~~~~~----------------------- 135 (249)
T 1m2k_A 79 AHQAFAELERLGVLKCLITQNVDDLHERAGSRNVIHLHGSLRVVRCTSCNNSFEVES----------------------- 135 (249)
T ss_dssp HHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCSEEETTEEEEEEEESSSSCEEECSS-----------------------
T ss_pred HHHHHHHHHhCCCCcEEEECCccchhhhcCCCcEEEecCCcceeEeCCCCCcccchh-----------------------
Confidence 999999999999999999999999999999999999999999999999998764221
Q ss_pred CcccchhhhhcCCCCCCCCCCCeecccEEEeCCCCChHHHHHHHHHhhhCCEEEEEccccccccccccC
Q psy1452 199 DVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVSFSKSML 267 (268)
Q Consensus 199 ~~~~~~~~~~~~~iP~Cp~Cgg~lrP~Vv~fgE~~~~~~~~~~~~~~~~~DlllviGTSl~V~p~~~~~ 267 (268)
. ++ ...+|+||.|||.|||+||||||++|++.++.+.+++++||++|||||||.|+|+++|+
T Consensus 136 ~--~~-----~~~~p~C~~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~adlllviGTSl~V~P~~~l~ 197 (249)
T 1m2k_A 136 A--PK-----IPPLPKCDKCGSLLRPGVVWAGEMLPPDVLDRAMREVERADVIIVAGTSAVVQPAASLP 197 (249)
T ss_dssp C--CC-----SSSCCBCSSSSSBEEEEECCTTSCCCHHHHHHHHHHHHHCSEEEEESCCSCSTTGGGHH
T ss_pred h--cc-----CCCCCCCCCCCCCcCCeEEecCCCCCHHHHHHHHHHHhcCCEEEEEccCCCccchHHHH
Confidence 0 11 11379999999999999999999999999999999999999999999999999999864
No 6
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=100.00 E-value=1.3e-55 Score=394.12 Aligned_cols=198 Identities=33% Similarity=0.584 Sum_probs=168.4
Q ss_pred HHHHHHHHHHHh--CCcEEEEeCcccccccCCCCccCCCCccccccCCCC-------CChHHHhhChHHHHHHHHHhhcC
Q psy1452 37 SDINKLKQFIEK--YNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRP-------VQFQDFLKSRRVRIRYWARNFVG 107 (268)
Q Consensus 37 ~~l~~l~~~l~~--a~~ivi~tGAGiS~~sGiP~fr~~~~g~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 107 (268)
-.|+.++++|++ |++|||+||||||++|||||||+++.|+|.+...+. ++...|..+|+.+|.|+...+
T Consensus 9 ~~l~~la~~i~~~~a~~IvvlTGAGISteSGIPdFR~~~~Glw~~~~~~~l~~pe~~~~~~~f~~~P~~f~~~~~~~~-- 86 (285)
T 3glr_A 9 LSLQDVAELIRARACQRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFELPFFFHNPKPFFTLAKELY-- 86 (285)
T ss_dssp CCHHHHHHHHHTTSCCCEEEEECGGGTGGGTCCCTTSSSSHHHHHHHTTCCSSGGGGGCHHHHHHCCHHHHHHHHHHS--
T ss_pred cCHHHHHHHHHhcCCCeEEEEeCCccchhhCCCCcccCCCccccchhccCCCCHHHHhCHHHHhhCcHHHHHHHHHhh--
Confidence 469999999997 899999999999999999999998449998754332 233457789988888765432
Q ss_pred ccccCCCCCCHHHHHHHHhHhcCCCcEEEeccCcchhhhhc--CCceEEecccccceeeCCCCcccchhhHHHHHHhhCC
Q psy1452 108 WPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAG--NKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNP 185 (268)
Q Consensus 108 ~~~~~~~~P~~~H~~L~~L~~~~~~~~iiTqNiD~L~~~aG--~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p 185 (268)
. .+++||.+|++|++|+++|++.+||||||||||++|| .++|+|+||++...+|+.|++.++..++...+
T Consensus 87 -~--~~a~Pn~~H~~La~Le~~g~l~~viTQNIDgLh~rAG~~~~~VielHGs~~~~~C~~C~~~~~~~~~~~~i----- 158 (285)
T 3glr_A 87 -P--GNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCTVCQRPFPGEDIRADV----- 158 (285)
T ss_dssp -T--TSCCCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCGGGEEETTEEEEEEEETTTCCEEEGGGGHHHH-----
T ss_pred -h--ccCCCCHHHHHHHHHHHcCCCceEEeeeecchHhhcCCCcccEEEecCCCCeEEECCCCCcCCHHHHHHHh-----
Confidence 2 4789999999999999999999999999999999999 58999999999999999999988655432211
Q ss_pred chhhhcccCCCCCCcccchhhhhcCCCCCCCCCCCeecccEEEeCCCCChHHHHHHHHHhhhCCEEEEEccccccccccc
Q psy1452 186 DLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVSFSKS 265 (268)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~iP~Cp~Cgg~lrP~Vv~fgE~~~~~~~~~~~~~~~~~DlllviGTSl~V~p~~~ 265 (268)
....+|+||.|||.|||+||||||++|+..+ .+.+.+.+||++|||||||+|+|+++
T Consensus 159 ----------------------~~~~~P~C~~Cgg~lrP~IV~FGE~lp~~~~-~~~~~~~~aDlllviGTSl~V~Paa~ 215 (285)
T 3glr_A 159 ----------------------MADRVPRCPVCTGVVKPDIVFFGEPLPQRFL-LHVVDFPMADLLLILGTSLEVEPFAS 215 (285)
T ss_dssp ----------------------HTTCCCBCTTTCCBEEEEECCTTSBCCGGGG-GHHHHHHHCSEEEEESCCCCEETTGG
T ss_pred ----------------------hcCCCCCCCCCCCccCCcEEEeCCcCCHHHH-HHHHHHhcCCEEEEeCCCCccccHHH
Confidence 2235899999999999999999999998866 45778899999999999999999998
Q ss_pred cC
Q psy1452 266 ML 267 (268)
Q Consensus 266 ~~ 267 (268)
++
T Consensus 216 l~ 217 (285)
T 3glr_A 216 LT 217 (285)
T ss_dssp GG
T ss_pred HH
Confidence 86
No 7
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=100.00 E-value=1.2e-54 Score=390.48 Aligned_cols=205 Identities=30% Similarity=0.482 Sum_probs=169.0
Q ss_pred CCHHHHHHHHHHHHh--CCcEEEEeCcccccccCCCCccCCCCccccccCCCC-------CChHHHhhChHHHHHHHHHh
Q psy1452 34 VEESDINKLKQFIEK--YNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRP-------VQFQDFLKSRRVRIRYWARN 104 (268)
Q Consensus 34 ~~~~~l~~l~~~l~~--a~~ivi~tGAGiS~~sGiP~fr~~~~g~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 104 (268)
.++.++++++++|++ |++|||+||||||++|||||||+++.|+|....... ++...|..+|+.+|.||.+.
T Consensus 3 ~~~~~i~~l~~~i~~~~a~~ivvltGAGiSt~SGIPdfR~~~~Glw~~~~~~~l~~~e~~~~~~~f~~~p~~f~~~~~~~ 82 (289)
T 1q1a_A 3 STEMSVRKIAAHMKSNPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLAKEL 82 (289)
T ss_dssp CTHHHHHHHHHHHHHSTTSCEEEEECGGGGGGGTCCCSSSTTTSGGGSCGGGCCSSGGGGGBHHHHHHCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCCCCEEEEECCceeHhhCCCCcCCCCCcccccccccCCCCHHHhcCHHHHhcCHHHHHHHHHHH
Confidence 567889999999999 999999999999999999999998449999743222 23455778999999988764
Q ss_pred hcCccccCCCCCCHHHHHHHHhHhcCCCcEEEeccCcchhhhhcC--CceEEecccccceeeCCCCcccchhhHHHHHHh
Q psy1452 105 FVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGN--KKVIEMHGTAFRVMCLGCDYEIDRHKFQKILED 182 (268)
Q Consensus 105 ~~~~~~~~~~~P~~~H~~L~~L~~~~~~~~iiTqNiD~L~~~aG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~ 182 (268)
+ ..+++||.+|++|++|++.|++.+||||||||||++||. ++|+|+||++..++|++|++.++..++...+..
T Consensus 83 ~-----~~~a~Pn~~H~~La~L~~~g~~~~viTQNVDgLh~~AG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~ 157 (289)
T 1q1a_A 83 Y-----PGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPPQVFKSKLAE 157 (289)
T ss_dssp C-----SSSCCCCHHHHHHHHHHHTTCEEEEEECCSSCHHHHTTCCGGGEEETTEEEEEEEETTTCCEECHHHHHHHHTC
T ss_pred h-----hCcCCCCHHHHHHHHHHhCCCccEEEecCccchHHHcCCCcccEEEecCCcCceEECCCCCCCcHHHHHHHHhh
Confidence 3 148899999999999999999999999999999999995 599999999999999999998876554322210
Q ss_pred hCCchhhhcccCCCCCCcccchhhhhcCCCCCCCCCCCeecccEEEeCCCCChHHHHHH-------------HHHhhhCC
Q psy1452 183 LNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKI-------------DHLVRSCD 249 (268)
Q Consensus 183 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~iP~Cp~Cgg~lrP~Vv~fgE~~~~~~~~~~-------------~~~~~~~D 249 (268)
. +...+|+||+|||.|||+||||||++|++.++.+ .+.+.+||
T Consensus 158 --------------~----------~~~~~P~C~~Cgg~lrP~vv~FGE~lp~~~~~~~~~~~~~l~~~~~a~~~~~~~D 213 (289)
T 1q1a_A 158 --------------H----------PIKDFVKCDVCGELVKPAIVFFGEDLPDSFSETWLNDSEWLREKITTSGKHPQQP 213 (289)
T ss_dssp --------------S----------SCCSCCBCTTTCCBEEEEECCBTSBCCHHHHHHHHHHHHHHHHHHHC----CCCC
T ss_pred --------------c----------cCCCCccCCCCCCEECCCEEEcCCCCCHHHHHHHHHhhhhhhhhhhHHHHhccCC
Confidence 0 1124899999999999999999999998765443 24467999
Q ss_pred EEEEEccccccccccccC
Q psy1452 250 GVLVLGSSLTVSFSKSML 267 (268)
Q Consensus 250 lllviGTSl~V~p~~~~~ 267 (268)
++|||||||+|+|+++|+
T Consensus 214 lllviGTSl~V~Pa~~l~ 231 (289)
T 1q1a_A 214 LVIVVGTSLAVYPFASLP 231 (289)
T ss_dssp EEEEESCCCCEETTTHHH
T ss_pred EEEEEccCCChhhHHHHH
Confidence 999999999999999874
No 8
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=100.00 E-value=4.5e-54 Score=395.85 Aligned_cols=210 Identities=30% Similarity=0.466 Sum_probs=159.9
Q ss_pred CCCCCCCHHHHHHHHHHHHh--CCcEEEEeCcccccccCCCCccCCCCccccccCCCC-------CChHHHhhChHHHHH
Q psy1452 29 PKHKPVEESDINKLKQFIEK--YNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRP-------VQFQDFLKSRRVRIR 99 (268)
Q Consensus 29 ~~~~~~~~~~l~~l~~~l~~--a~~ivi~tGAGiS~~sGiP~fr~~~~g~~~~~~~~~-------~~~~~~~~~~~~~~~ 99 (268)
..+.+.++.++++++++|++ |++|||+||||||++|||||||+++.|+|....... ++...|..+|+.+|.
T Consensus 6 ~~~~~~~~~~i~~l~~~i~~~~a~~IVvlTGAGISteSGIPdFR~~~~Glw~~~~~~~l~~pe~~~s~~~f~~~P~~f~~ 85 (361)
T 1q14_A 6 SVSTASTEMSVRKIAAHMKSNPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYT 85 (361)
T ss_dssp CCSSCCHHHHHHHHHHHHHTSTTCCEEEEECGGGTGGGC--------------CCCCCCSSGGGGGBHHHHHHCCHHHHH
T ss_pred CCCchhHHHHHHHHHHHHHhccCCcEEEEeCcccchhcCCcccccCcchhhhcccccCCCCHHHhcCHHHHhcCHHHHHH
Confidence 44555667889999999999 999999999999999999999998439999754332 233457789998888
Q ss_pred HHHHhhcCccccCCCCCCHHHHHHHHhHhcCCCcEEEeccCcchhhhhcC--CceEEecccccceeeCCCCcccchhhHH
Q psy1452 100 YWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGN--KKVIEMHGTAFRVMCLGCDYEIDRHKFQ 177 (268)
Q Consensus 100 ~~~~~~~~~~~~~~~~P~~~H~~L~~L~~~~~~~~iiTqNiD~L~~~aG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~ 177 (268)
||.+.+ ...++||.+|++|++|++.|++.+||||||||||++||. ++|+|+||++..++|+.|++.++..++.
T Consensus 86 ~~~~~~-----~~~a~Pn~~H~aLa~Le~~g~~~~ViTQNVDgLh~rAG~~~~~VielHGsl~~~~C~~C~~~~~~~~~~ 160 (361)
T 1q14_A 86 LAKELY-----PGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPPQVFK 160 (361)
T ss_dssp HHTTTS-----CCCCCCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCGGGEEETTEEEEEEEETTTCCEECTHHHH
T ss_pred HHHHHh-----hCcCCCCHHHHHHHHHHhcCCCcEEEecccchhHhHcCCCcceEEeccccccccCcCCCCccCcHHHHH
Confidence 885432 248899999999999999999999999999999999995 5999999999999999999887655443
Q ss_pred HHHHhhCCchhhhcccCCCCCCcccchhhhhcCCCCCCCCCCCeecccEEEeCCCCChHHHHHHHH-------------H
Q psy1452 178 KILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDH-------------L 244 (268)
Q Consensus 178 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~iP~Cp~Cgg~lrP~Vv~fgE~~~~~~~~~~~~-------------~ 244 (268)
..+.. . ....+|+||.|||.|||+||||||++|+..++.+.+ .
T Consensus 161 ~~~~~--------------~----------~~~~~P~Cp~Cgg~lrP~VV~FGE~lp~~~~~~~~~a~~~l~~~i~~~~~ 216 (361)
T 1q14_A 161 SKLAE--------------H----------PIKDFVKCDVCGELVKPAIVFFGEDLPDSFSETWLNDSEWLREKITTSGK 216 (361)
T ss_dssp HHTTS--------------S----------SCSCCCBCTTTCCBEEEEECCBTSCCCHHHHHHHHHHHHHHHHC------
T ss_pred HHHhh--------------c----------ccCCCCCCcCCCCEeCCCcccccccCCHHHHHHHHHHHHhhhhcchhhhh
Confidence 22110 0 012379999999999999999999999887766655 4
Q ss_pred hhhCCEEEEEccccccccccccC
Q psy1452 245 VRSCDGVLVLGSSLTVSFSKSML 267 (268)
Q Consensus 245 ~~~~DlllviGTSl~V~p~~~~~ 267 (268)
+.+||++|||||||.|+|+++|+
T Consensus 217 ~~~aDllLviGTSl~V~Paa~l~ 239 (361)
T 1q14_A 217 HPQQPLVIVVGTSLAVYPFASLP 239 (361)
T ss_dssp --CCCEEEEESCCCCSTTGGGHH
T ss_pred hccCCEEEEECCCCCchhHHHHH
Confidence 67999999999999999999874
No 9
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Probab=100.00 E-value=8.9e-54 Score=389.51 Aligned_cols=220 Identities=29% Similarity=0.536 Sum_probs=176.4
Q ss_pred hhhhhhcccccCCCCCCCcccccCCCCCCCHHHHHHHHHHHHh--CCcEEEEeCcccccccCCCCccCCCCccccccCCC
Q psy1452 6 IQRLFFKHFIVPPDVTSRSISFIPKHKPVEESDINKLKQFIEK--YNKILVVTGAGISTESGIPDYRSEGVGLYARSDKR 83 (268)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~--a~~ivi~tGAGiS~~sGiP~fr~~~~g~~~~~~~~ 83 (268)
+-|+|.+.+.+..+ .++-..+.+++.++++|++ |++|||+||||||++|||||||+++.|+|......
T Consensus 8 ~~~~~~~~~~~~~~----------~~~~~~~~~l~~l~~~i~~~~a~~ivvltGAGiSt~SGIPdfR~~~~Glw~~~~~~ 77 (323)
T 1j8f_A 8 LRNLFSQTLSLGSQ----------KERLLDELTLEGVARYMQSERCRRVICLVGAGISTSAGIPDFRSPSTGLYDNLEKY 77 (323)
T ss_dssp HHHHC---------------------CCCSSSSHHHHHHHHHSTTCCCEEEEECGGGTGGGTCCCTTCSCSTTSTTTTTT
T ss_pred HHHHHHHhcCCCCC----------CcccCCHHHHHHHHHHHHhcCCCcEEEEecchhhHhhCCCcccCCCccHHHHhhhc
Confidence 44556655555421 2233445679999999997 89999999999999999999999833999985433
Q ss_pred C-------CChHHHhhChHHHHHHHHHhhcCccccCCCCCCHHHHHHHHhHhcCCCcEEEeccCcchhhhhc--CCceEE
Q psy1452 84 P-------VQFQDFLKSRRVRIRYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAG--NKKVIE 154 (268)
Q Consensus 84 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~H~~L~~L~~~~~~~~iiTqNiD~L~~~aG--~~~v~e 154 (268)
. .+...|..+|+.+|.||...+ . .+++||.+|++|++|+++|++.+|||||||+||++|| .++|+|
T Consensus 78 ~l~~p~~~~~~~~f~~~p~~f~~~~r~~~---~--~~a~Pn~~H~aLa~L~~~g~~~~viTQNIDgLh~~AG~~~~~Vie 152 (323)
T 1j8f_A 78 HLPYPEAIFEISYFKKHPEPFFALAKELY---P--GQFKPTICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLEQEDLVE 152 (323)
T ss_dssp CCSSGGGGGBHHHHHHCCHHHHHHHHHHS---S--SSCCCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCGGGEEE
T ss_pred CCCCHHHHcCHHHHhcCHHHHHHHHHHHh---h--CcCCCCHHHHHHHHHHhcCCCcEEEeecccchHHHcCCCcccEEE
Confidence 2 233457789999998874332 2 4889999999999999999999999999999999999 479999
Q ss_pred ecccccceeeCC--CCcccchhhHHHHHHhhCCchhhhcccCCCCCCcccchhhhhcCCCCCCCCCCCeecccEEEeCCC
Q psy1452 155 MHGTAFRVMCLG--CDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDN 232 (268)
Q Consensus 155 lHG~~~~~~C~~--C~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~iP~Cp~Cgg~lrP~Vv~fgE~ 232 (268)
+||++...+|++ |++.++...+...+ ....+|+||.|||.|||+||||||+
T Consensus 153 lHGs~~~~~C~~~~C~~~~~~~~~~~~i---------------------------~~~~~P~C~~Cgg~lrP~VV~FGE~ 205 (323)
T 1j8f_A 153 AHGTFYTSHCVSASCRHEYPLSWMKEKI---------------------------FSEVTPKCEDCQSLVKPDIVFFGES 205 (323)
T ss_dssp TTEEEEEEEESCTTTCCEECHHHHHHHH---------------------------HTTCCCBCTTTCCBEEEEECCBTSC
T ss_pred eeCCcceeecCCCccCccccHHHHHHhh---------------------------ccCCCCCCcCCCCccCCCEEecCCc
Confidence 999999999999 99987654432211 1235899999999999999999999
Q ss_pred CChHHHHHHHHHhhhCCEEEEEccccccccccccC
Q psy1452 233 IPRHRMEKIDHLVRSCDGVLVLGSSLTVSFSKSML 267 (268)
Q Consensus 233 ~~~~~~~~~~~~~~~~DlllviGTSl~V~p~~~~~ 267 (268)
+|++.++.+.+++.+||++|||||||.|+|+++|+
T Consensus 206 lp~~~~~~a~~~~~~aDlllviGTSl~V~P~a~l~ 240 (323)
T 1j8f_A 206 LPARFFSCMQSDFLKVDLLLVMGTSLQVQPFASLI 240 (323)
T ss_dssp CCHHHHHHHHHGGGSCSEEEEESSCSCSHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCEEEEEeeCcccHHHHHHH
Confidence 99999999999999999999999999999999875
No 10
>4iao_A NAD-dependent histone deacetylase SIR2; protein complex, deacetylase, nucleus, hydrolase-trans complex; HET: APR; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-52 Score=393.48 Aligned_cols=223 Identities=27% Similarity=0.400 Sum_probs=176.9
Q ss_pred HHHHHHHHHHHhCCcEEEEeCcccccccCCCCccCCCCccccccCCC-------CCChHHHhhChHHHHHHHHHhhcCcc
Q psy1452 37 SDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKR-------PVQFQDFLKSRRVRIRYWARNFVGWP 109 (268)
Q Consensus 37 ~~l~~l~~~l~~a~~ivi~tGAGiS~~sGiP~fr~~~~g~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (268)
+.+++++++|++|++|||+||||||++|||||||+.+ |+|...... .++...|..+|+.+|.|+.. . +.
T Consensus 172 ~~i~~l~~~L~~ak~IVVLTGAGISTeSGIPDFRs~~-GLw~~~~~~gl~~Pe~v~s~~~F~~dP~~Fy~~~r~-~--~~ 247 (492)
T 4iao_A 172 FTIDHFIQKLHTARKILVLTGAGVSTSLGIPDFRSSE-GFYSKIKHLGLDDPQDVFNYNIFMHDPSVFYNIANM-V--LP 247 (492)
T ss_dssp CSHHHHHHHHHHCSCEEEEECGGGGGGGTCCCSSSTT-SHHHHHHTSCCSCGGGGGBHHHHHHCHHHHHHHGGG-G--CC
T ss_pred HHHHHHHHHHHhCCcEEEEeCcccccccCCccccCch-HHHHhhhhcCCCCHHHhcCHHHHhhChHHHHHHHHH-h--hC
Confidence 4689999999999999999999999999999999998 999875321 23567788999987665422 1 11
Q ss_pred ccCCCCCCHHHHHHHHhHhcCCCcEEEeccCcchhhhhcC--CceEEecccccceeeCCCCcccchhhHHHHHHhhCCch
Q psy1452 110 RFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGN--KKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDL 187 (268)
Q Consensus 110 ~~~~~~P~~~H~~L~~L~~~~~~~~iiTqNiD~L~~~aG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~ 187 (268)
..++||.+|++|++|+++|++.+||||||||||++||. ++|+|+||++...+|+.|+..++.+++.+.+...++..
T Consensus 248 --~~~~Pn~aH~aLa~Le~~G~l~~VITQNIDgLHqrAG~~s~~ViELHGsl~~~~C~~Cg~~~~~e~i~~~i~~~~~P~ 325 (492)
T 4iao_A 248 --PEKIYSPLHSFIKMLQMKGKLLRNYTQNIDNLESYAGISTDKLVQCHGSFATATCVTCHWNLPGERIFNKIRNLELPL 325 (492)
T ss_dssp --CSSCCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCTTTEEETTCCTTEEEETTTCCEEEGGGGHHHHHTTCCCB
T ss_pred --CcCCCCHHHHHHHHHHHCCCCceeEeccccchHhhcCCChhhEEeecCccceeecCCCCCcCCHHHHHHHHhccCCCC
Confidence 36789999999999999999999999999999999994 79999999999999999999988776655555443322
Q ss_pred hhhcc----------cCCCCCCcccchhhhhcCCCCCCCCCCCeecccEEEeCCCCChHHHHHHHHHhhhCCEEEEEccc
Q psy1452 188 MIESQ----------EMRPDGDVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSS 257 (268)
Q Consensus 188 ~~~~~----------~~~~~~~~~~~~~~~~~~~iP~Cp~Cgg~lrP~Vv~fgE~~~~~~~~~~~~~~~~~DlllviGTS 257 (268)
+.... ...++++.... .......|.|+.|||.|||+||||||++|++.++.+.+++.+||++||||||
T Consensus 326 Cp~Cg~~~~~~~~~~~~~~dg~~~~~--~~~~~~~~~c~~cgG~LRPdIVfFGE~LP~~~~~~a~~~~~~aDLlLVIGTS 403 (492)
T 4iao_A 326 CPYCYKKRREYFPEGYNNKVGVAASQ--GSMSERPPYILNSYGVLKPDITFFGEALPNKFHKSIREDILECDLLICIGTS 403 (492)
T ss_dssp CTTTHHHHHHHSTTCCCCC----------CCTTCCTTCCTTTTBEEESSCCBTSBCCHHHHHHHHHHTTTCSEEEEESCC
T ss_pred Cccccccccccccccccccccccccc--ccccccccccccCCCcCCCCEEECCCCCCHHHHHHHHHHHhhCCEEEEeccC
Confidence 21110 11222222211 1122347899999999999999999999999999999999999999999999
Q ss_pred cccccccccC
Q psy1452 258 LTVSFSKSML 267 (268)
Q Consensus 258 l~V~p~~~~~ 267 (268)
|+|+|+++|+
T Consensus 404 L~VyPaA~Lv 413 (492)
T 4iao_A 404 LKVAPVSEIV 413 (492)
T ss_dssp CCEETGGGHH
T ss_pred CCccchhhHH
Confidence 9999999875
No 11
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-52 Score=385.08 Aligned_cols=223 Identities=28% Similarity=0.439 Sum_probs=176.0
Q ss_pred HHHHHHHHHHHhCCcEEEEeCcccccccCCCCccCCCCccccccCC-------CCCChHHHhhChHHHHHHHHHhhcCcc
Q psy1452 37 SDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDK-------RPVQFQDFLKSRRVRIRYWARNFVGWP 109 (268)
Q Consensus 37 ~~l~~l~~~l~~a~~ivi~tGAGiS~~sGiP~fr~~~~g~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (268)
++|+.++++|++|++|||+||||||++|||||||+++ |+|...+. ..+++..|..+|+.+|.|+... +.
T Consensus 34 ~~i~~l~~~l~~a~~IvvlTGAGISt~SGIPdFR~~~-Glw~~~~~~~l~~p~~~~~~~~F~~~P~~f~~~~~~~---~~ 109 (354)
T 2hjh_A 34 FTIDHFIQKLHTARKILVLTGAGVSTSLGIPDFRSSE-GFYSKIKHLGLDDPQDVFNYNIFMHDPSVFYNIANMV---LP 109 (354)
T ss_dssp CSHHHHHHHHHHCSSEEEEECGGGGGGGTCCCSSSTT-SHHHHTGGGCCSSGGGGGBHHHHHHCTHHHHHHGGGG---CC
T ss_pred HHHHHHHHHHHhCCcEEEEECchhhHhhCCCcccCcc-hHHHHHHhhcCCCHHHhCCHHHHhcCHHHHHHHHHHH---cc
Confidence 4799999999999999999999999999999999998 99997432 1345667889999887776321 22
Q ss_pred ccCCCCCCHHHHHHHHhHhcCCCcEEEeccCcchhhhhcC--CceEEecccccceeeCCCCcccchhhHHHHHHhhCCch
Q psy1452 110 RFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGN--KKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDL 187 (268)
Q Consensus 110 ~~~~~~P~~~H~~L~~L~~~~~~~~iiTqNiD~L~~~aG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~ 187 (268)
..++||.+|++|++|+++|++.+||||||||||++||. ++|+|+||++...+|++|+..++..++...+...++.+
T Consensus 110 --~~~~Pn~~H~aLa~Le~~g~l~~viTQNVDgLh~rAG~~~~~vielHGsl~~~~C~~C~~~~~~~~~~~~~~~~~~P~ 187 (354)
T 2hjh_A 110 --PEKIYSPLHSFIKMLQMKGKLLRNYTQNIDNLESYAGISTDKLVQCHGSFATATCVTCHWNLPGERIFNKIRNLELPL 187 (354)
T ss_dssp --CCSCCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCTTTEEETTEEEEEEEETTTCCEEEGGGGHHHHHTTCCCB
T ss_pred --ccCCCCHHHHHHHHHHHcCCceEEEecccCcHHHHcCCCccCEEEecCCcCccccCCCCCcCCHHHHHHHhhccCCCc
Confidence 36789999999999999999999999999999999995 79999999999999999999887766655554433322
Q ss_pred hhhcc----cCCCC------CCcccchhhhhcCCCCCCCCCCCeecccEEEeCCCCChHHHHHHHHHhhhCCEEEEEccc
Q psy1452 188 MIESQ----EMRPD------GDVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSS 257 (268)
Q Consensus 188 ~~~~~----~~~~~------~~~~~~~~~~~~~~iP~Cp~Cgg~lrP~Vv~fgE~~~~~~~~~~~~~~~~~DlllviGTS 257 (268)
+.... ...++ ++..+... .. ...+.|..|||.|||+||||||.+|+..++.+.+++.+||++||||||
T Consensus 188 Cp~C~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~c~g~lrPdVV~FGE~lp~~~~~~a~~~~~~aDllLviGTS 265 (354)
T 2hjh_A 188 CPYCYKKRREYFPEGYNNKVGVAASQGS-MS-ERPPYILNSYGVLKPDITFFGEALPNKFHKSIREDILECDLLICIGTS 265 (354)
T ss_dssp CTTTHHHHHHHCCC-------------------CCTTSCTTTTBEEEEECCBTSBCCHHHHHHHHHHTTTCCEEEEESCC
T ss_pred Cccccccccccccccccccccccccccc-cc-cccccccccCCeeCCChhhccccCCHHHHHHHHHHHhhCCEEEEECcC
Confidence 21110 00000 11111111 11 135678999999999999999999999999999999999999999999
Q ss_pred cccccccccC
Q psy1452 258 LTVSFSKSML 267 (268)
Q Consensus 258 l~V~p~~~~~ 267 (268)
|+|+|+++|+
T Consensus 266 L~V~Paa~lv 275 (354)
T 2hjh_A 266 LKVAPVSEIV 275 (354)
T ss_dssp CCEETGGGHH
T ss_pred CCchhHHHHH
Confidence 9999999875
No 12
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5
Probab=100.00 E-value=4.2e-53 Score=369.97 Aligned_cols=185 Identities=30% Similarity=0.486 Sum_probs=151.8
Q ss_pred CCcEEEEeCcccccccCCCCccCCCCccccccCC-CCCChHHHhhChHHHHHHHHHhhcCccccCCCCCCHHHHHHHHhH
Q psy1452 49 YNKILVVTGAGISTESGIPDYRSEGVGLYARSDK-RPVQFQDFLKSRRVRIRYWARNFVGWPRFSSFQPNANHYALKQME 127 (268)
Q Consensus 49 a~~ivi~tGAGiS~~sGiP~fr~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~H~~L~~L~ 127 (268)
|++|||+||||||++|||||||+++ |+|.+... ...+...|..+|+.+|+||.+....+.. .+++||.+|++|++|+
T Consensus 1 a~~ivvltGAGiS~~SGIPdfR~~~-Glw~~~~~~~~~~~~~f~~~p~~~~~f~~~~~~~~~~-~~a~Pn~~H~~La~L~ 78 (235)
T 1s5p_A 1 KPRVLVLTGAGISAESGIRTFRAAD-GLWEEHRVEDVATPEGFDRDPELVQAFYNARRRQLQQ-PEIQPNAAHLALAKLQ 78 (235)
T ss_dssp CCCEEEEECTHHHHTTTCCCCCSSS-CEETTEEHHHHSSHHHHHHCHHHHHHHHHHHHHHHTS-TTCCCCHHHHHHHHHH
T ss_pred CCcEEEEechhhhhhhCCCCCCCCC-CCccCCCHhHcccHHHHhhCHHHHHHHHHHHHHHhhh-cCCCCCHHHHHHHHHH
Confidence 6899999999999999999999998 99997532 2246678889999999999865432111 3699999999999999
Q ss_pred h-cCCCcEEEeccCcchhhhhcCCceEEecccccceeeCCCCcccchhhHHHHHHhhCCchhhhcccCCCCCCcccchhh
Q psy1452 128 D-NEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEET 206 (268)
Q Consensus 128 ~-~~~~~~iiTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 206 (268)
+ .|++.+|||||||+||++||.++|+|+||++...+|++|++.++..+ + +
T Consensus 79 ~~~g~~~~viTQNvD~Lh~~AG~~~v~elHG~~~~~~C~~C~~~~~~~~-----------------------~--~---- 129 (235)
T 1s5p_A 79 DALGDRFLLVTQNIDNLHERAGNTNVIHMHGELLKVRCSQSGQVLDWTG-----------------------D--V---- 129 (235)
T ss_dssp HHHGGGEEEEESCCSSHHHHHTCCSCEETTEEEEEEEETTTCCEEECCS-----------------------C--C----
T ss_pred HhhCCceEEEeccccchhhhcCCCcEEEecCCceEEEeCCCCCcccchh-----------------------h--c----
Confidence 8 69999999999999999999999999999999999999998764221 0 1
Q ss_pred hhcCCCCCCCCCCCeecccEEEeCCCCChHHHHHHHHHhhhCCEEEEEccccccccccccC
Q psy1452 207 ISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVSFSKSML 267 (268)
Q Consensus 207 ~~~~~iP~Cp~Cgg~lrP~Vv~fgE~~~~~~~~~~~~~~~~~DlllviGTSl~V~p~~~~~ 267 (268)
....+|.|++|||.|||+||||||. + ..++.+.+++++||++|||||||.|+|+++|+
T Consensus 130 -~~~~~p~c~~Cgg~lrP~vv~FGE~-p-~~~~~a~~~~~~adl~lviGTSl~V~Pa~~l~ 187 (235)
T 1s5p_A 130 -TPEDKCHCCQFPAPLRPHVVWFGEM-P-LGMDEIYMALSMADIFIAIGTSGHVYPAAGFV 187 (235)
T ss_dssp -CSSCCC-------CEEEEECCTTSC-C-SSHHHHHHHHHHCSEEEEESCCTTEETGGGHH
T ss_pred -cCCCCCCCCCCCCeecCcEEEeCCC-H-HHHHHHHHHHhcCCEEEEECcCCchhhHHHHH
Confidence 1124899999999999999999999 6 46899999999999999999999999999874
No 13
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Probab=100.00 E-value=4e-50 Score=362.26 Aligned_cols=196 Identities=29% Similarity=0.502 Sum_probs=153.8
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEeCcccccccCCCCccCCCCccccccCCCCCChHHHhhChHHHHHHHHHhhcCccccCC
Q psy1452 34 VEESDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRVRIRYWARNFVGWPRFSS 113 (268)
Q Consensus 34 ~~~~~l~~l~~~l~~a~~ivi~tGAGiS~~sGiP~fr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (268)
..++++++++++|++|++|||+||||||++|||||||+.+ |+|...+. . .+|.. . ..+.+
T Consensus 29 ~l~~~i~~l~~~i~~a~~ivvlTGAGISteSGIPdFR~~~-Glw~~~~~-~-------~~p~~----------~-~~f~~ 88 (318)
T 3k35_A 29 ELERKVWELARLVWQSSSVVFHTGAGISTASGIPDFRGPH-GVWTMEER-G-------LAPKF----------D-TTFES 88 (318)
T ss_dssp HHHHHHHHHHHHHHHCSCEEEEECGGGSGGGTCCCSSSTT-CHHHHHTT-T-------CCCCC----------S-SCTTT
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeccccChhhCCCccccCC-Ccchhhhc-c-------CCHHH----------H-HHhhh
Confidence 4478999999999999999999999999999999999998 99986321 1 12210 0 12358
Q ss_pred CCCCHHHHHHHHhHhcCCCcEEEeccCcchhhhhcC--CceEEecccccceeeCCCCcccchhhHHHHHHhhCCchhhhc
Q psy1452 114 FQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGN--KKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIES 191 (268)
Q Consensus 114 ~~P~~~H~~L~~L~~~~~~~~iiTqNiD~L~~~aG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~ 191 (268)
++||.+|++|++|+++|++.+||||||||||++||. ++|+|+||++...+|+.|++.+.+..+....
T Consensus 89 a~Pn~~H~aLa~Le~~g~~~~viTQNIDgLh~rAG~~~~~VielHGsl~~~~C~~C~~~~~~~~~~~~~----------- 157 (318)
T 3k35_A 89 ARPTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVGTM----------- 157 (318)
T ss_dssp CCCCHHHHHHHHHHHTTCCCEEEECCCSCHHHHBTCCGGGEEETTCCTTEEEETTTCCEEECSSCCSCC-----------
T ss_pred CCCCHHHHHHHHHHHcCCceEEEEecccchHhhcCCCccCEEEeCCCCCeeEeCCCCCccchHHhhhhc-----------
Confidence 899999999999999999999999999999999996 6999999999999999999987543211000
Q ss_pred ccCCCCCCcccchhhhhcCCCCCCCCCCCeecccEEEeCCCCChHHHHHHHHHhhhCCEEEEEccccccccccccC
Q psy1452 192 QEMRPDGDVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVSFSKSML 267 (268)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~iP~Cp~Cgg~lrP~Vv~fgE~~~~~~~~~~~~~~~~~DlllviGTSl~V~p~~~~~ 267 (268)
...++++ .+ .....+.|+.|||.|||+||||||.+|.+.++.+.+++++||++|||||||+|+|+++|+
T Consensus 158 -~~~p~~~----~C--~~~~~~~c~~CgG~LRPdVV~FGE~lP~~~~~~a~~~~~~aDllLViGTSL~V~Paa~l~ 226 (318)
T 3k35_A 158 -GLKATGR----LC--TVAKARGLRACRGELRDTILDWEDSLPDRDLALADEASRNADLSITLGTSLQIRPSGNLP 226 (318)
T ss_dssp -SSCEEEE----EC--CC--------CCCEEEECCCCTTCCCCHHHHHHHHHHHHTCSEEEEESCCCCSTTGGGHH
T ss_pred -ccCCCCC----cC--cccccccccCcCCeeCCCEEEccCcCCHHHHHHHHHHHhcCCEEEEEccCCCchhhhhhH
Confidence 0000000 00 001234567899999999999999999999999999999999999999999999999874
No 14
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural genomics, structural genomics consortium, SGC, hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Probab=100.00 E-value=5.4e-50 Score=364.36 Aligned_cols=196 Identities=30% Similarity=0.507 Sum_probs=157.8
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEeCcccccccCCCCccCCCCccccccCCCCCChHHHhhChHHHHHHHHHhhcCccccCC
Q psy1452 34 VEESDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRVRIRYWARNFVGWPRFSS 113 (268)
Q Consensus 34 ~~~~~l~~l~~~l~~a~~ivi~tGAGiS~~sGiP~fr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (268)
.+++++++|+++|++|++|||+||||||++|||||||+.+ |+|..... . .+|. + ...+.+
T Consensus 29 ~l~~~i~~la~~i~~a~~iVvlTGAGISteSGIPDFR~~~-Glw~~~~~-~-------~~p~---------~--~~~f~~ 88 (355)
T 3pki_A 29 ELERKVWELARLVWQSSSVVFHTGAGISTASGIPDFRGPH-GVWTMEER-G-------LAPK---------F--DTTFES 88 (355)
T ss_dssp HHHHHHHHHHHHHHHCSSEEEEECGGGSGGGTCCCSSSTT-CHHHHHHT-T-------CCCC---------C--SSCTTT
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeccccchhhCCCccccCC-Cccchhhc-c-------CChH---------H--HHHHhh
Confidence 4478999999999999999999999999999999999998 99985321 0 1121 0 012358
Q ss_pred CCCCHHHHHHHHhHhcCCCcEEEeccCcchhhhhcC--CceEEecccccceeeCCCCcccchhhHHHHHHhhCCchhhhc
Q psy1452 114 FQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGN--KKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIES 191 (268)
Q Consensus 114 ~~P~~~H~~L~~L~~~~~~~~iiTqNiD~L~~~aG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~ 191 (268)
++||.+|++|++|+++|++.+||||||||||++||. ++|+|+||++...+|+.|++.+.+..+...+
T Consensus 89 a~Pn~~H~aLa~Le~~g~l~~viTQNIDgLh~rAG~~~~~VieLHGsl~~~~C~~C~~~~~~~~~~~~~----------- 157 (355)
T 3pki_A 89 ARPTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVGTM----------- 157 (355)
T ss_dssp CCCCHHHHHHHHHHHTTCCSEEEECCCSCHHHHEEEEGGGEEETTCCTTEEEETTTCCEEEBSSCCSCC-----------
T ss_pred CCCCHHHHHHHHHHHcCCCcEEEEecccchHhhcCCCcccEEEeCCCCCceeeCCCCCccchHHhhhhc-----------
Confidence 899999999999999999999999999999999996 6999999999999999999987543211000
Q ss_pred ccCCCCCCcccchhhhhcCCCCCCCCCCCeecccEEEeCCCCChHHHHHHHHHhhhCCEEEEEccccccccccccC
Q psy1452 192 QEMRPDGDVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVSFSKSML 267 (268)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~iP~Cp~Cgg~lrP~Vv~fgE~~~~~~~~~~~~~~~~~DlllviGTSl~V~p~~~~~ 267 (268)
...++. +.+. ....+.|+.|||.|||+||||||.+|...++.+.+++.+||++|||||||+|+|+++|+
T Consensus 158 -~~~~~~----~~C~--~~~~~~~~~CgG~LRPdVV~FGE~lP~~~~~~A~~~~~~aDllLViGTSL~V~Paa~Lp 226 (355)
T 3pki_A 158 -GLKATG----RLCT--VAKARGLRACRGELRDTILDWEDSLPDRDLALADEASRNADLSITLGTSLQIRPSGNLP 226 (355)
T ss_dssp -SSCEEE----EECC--CCCBTTBCCCCCEEEECCCCTTSCCCHHHHHHHHHHHHHCSEEEEESCCCCSTTGGGTT
T ss_pred -ccCCCC----Cccc--cccccccccCCCccCCCEEECCCcCCHHHHHHHHHHHhcCCEEEEEeeCCCchhhhhhH
Confidence 000000 0000 01234578999999999999999999999999999999999999999999999999985
No 15
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=86.56 E-value=0.51 Score=33.38 Aligned_cols=74 Identities=22% Similarity=0.410 Sum_probs=42.1
Q ss_pred cceeeCCCCcccchhhHHHHHHhhCCchhhhcccCCCCCCcccchhhhhcCCCCCCCCCCCeecccEEEeCCCCChHHHH
Q psy1452 160 FRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRME 239 (268)
Q Consensus 160 ~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~iP~Cp~Cgg~lrP~Vv~fgE~~~~~~~~ 239 (268)
....|+-|+....+.++..........-.. -.|.+.. .+.++.+ +-+||.||.. +||..+|.+.-+
T Consensus 7 ~~~~~PlCG~~L~W~eLIeQML~~en~~ei-----~kDr~~F--l~~~e~F-~FkCP~CgEE------FyG~~Lp~~Eae 72 (95)
T 2k5c_A 7 HMAKCPICGSPLKWEELIEEMLIIENFEEI-----VKDRERF--LAQVEEF-VFKCPVCGEE------FYGKTLPRREAE 72 (95)
T ss_dssp -CEECSSSCCEECHHHHHHHSTTCSTHHHH-----TTCHHHH--HHHHHHS-EEECTTTCCE------EETTSSCTTTHH
T ss_pred ccccCCcCCCccCHHHHHHHHHhhccHHHH-----HhhHHHH--HHHHHHH-hhcCCCccHH------HhcccCChHHHH
Confidence 356899999999887765432211110000 0000000 0112222 6789999975 789999987777
Q ss_pred HHHHHhhh
Q psy1452 240 KIDHLVRS 247 (268)
Q Consensus 240 ~~~~~~~~ 247 (268)
+..+.+.+
T Consensus 73 KVFELLNd 80 (95)
T 2k5c_A 73 KVFELLND 80 (95)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHHH
Confidence 77776654
No 16
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=85.12 E-value=0.26 Score=39.43 Aligned_cols=12 Identities=33% Similarity=1.071 Sum_probs=9.9
Q ss_pred ceeeCCCCcccc
Q psy1452 161 RVMCLGCDYEID 172 (268)
Q Consensus 161 ~~~C~~C~~~~~ 172 (268)
..+|..|++.+.
T Consensus 132 ~y~C~~Cg~~~~ 143 (165)
T 2lcq_A 132 RYVCIGCGRKFS 143 (165)
T ss_dssp CEEESSSCCEES
T ss_pred EEECCCCCCccc
Confidence 578999999873
No 17
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=81.31 E-value=1.3 Score=35.40 Aligned_cols=33 Identities=12% Similarity=0.059 Sum_probs=27.1
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy1452 29 PKHKPVEESDINKLKQFIEKYNKILVVTGAGIS 61 (268)
Q Consensus 29 ~~~~~~~~~~l~~l~~~l~~a~~ivi~tGAGiS 61 (268)
+.+.+....++++++++|++|++-+|++|.|+.
T Consensus 14 ~~~~~~~~~~v~~aa~~L~~AkrPvil~G~g~~ 46 (170)
T 3cf4_G 14 YGVNTSKAVSPEMAAKIISKAKRPLLMVGTLAL 46 (170)
T ss_dssp SCSCCCEECCHHHHHHHHHHCSSEEEEECSTTC
T ss_pred CCCCCcCHHHHHHHHHHHHcCCCCEEEECCCcc
Confidence 444444455699999999999999999999985
No 18
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=80.58 E-value=0.57 Score=38.60 Aligned_cols=14 Identities=29% Similarity=0.627 Sum_probs=11.1
Q ss_pred ccceeeCCCCcccc
Q psy1452 159 AFRVMCLGCDYEID 172 (268)
Q Consensus 159 ~~~~~C~~C~~~~~ 172 (268)
...++|..||..+.
T Consensus 153 ~~~~~C~~CG~~~~ 166 (191)
T 1lko_A 153 ATKWRCRNCGYVHE 166 (191)
T ss_dssp EEEEEETTTCCEEE
T ss_pred CceEEECCCCCEee
Confidence 44699999998863
No 19
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=76.88 E-value=1.5 Score=37.68 Aligned_cols=42 Identities=19% Similarity=0.529 Sum_probs=28.3
Q ss_pred CceEEecccccceeeCCCCcccchhhHHHHHHhhCCchhhhcccCCCCCCcccchhhhhcCCCCCCCCCCCee
Q psy1452 150 KKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDL 222 (268)
Q Consensus 150 ~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~iP~Cp~Cgg~l 222 (268)
--|+.++|+ .|..|.-..+...+.... .+..+..||+||..|
T Consensus 191 ~avv~v~~~----~C~GC~~~lppq~~~~i~---------------------------~~~~Iv~Cp~CgRIL 232 (256)
T 3na7_A 191 TSIVTIKKQ----ACGGCFIRLNDKIYTEVL---------------------------TSGDMITCPYCGRIL 232 (256)
T ss_dssp GSEEECBTT----BCTTTCCBCCHHHHHHHH---------------------------HSSSCEECTTTCCEE
T ss_pred ceEEEeeCC----ccCCCCeeeCHHHHHHHH---------------------------CCCCEEECCCCCeeE
Confidence 457888875 899999877644432211 123588999999764
No 20
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=76.57 E-value=0.84 Score=34.52 Aligned_cols=19 Identities=11% Similarity=0.387 Sum_probs=13.2
Q ss_pred EecccccceeeCCCCcccc
Q psy1452 154 EMHGTAFRVMCLGCDYEID 172 (268)
Q Consensus 154 elHG~~~~~~C~~C~~~~~ 172 (268)
++.---..++|.+|++.+.
T Consensus 66 ~i~~~p~~~~C~~CG~~~e 84 (119)
T 2kdx_A 66 DIVDEKVELECKDCSHVFK 84 (119)
T ss_dssp EEEEECCEEECSSSSCEEC
T ss_pred EEEeccceEEcCCCCCEEe
Confidence 4443444689999999873
No 21
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=66.69 E-value=2.6 Score=28.92 Aligned_cols=13 Identities=15% Similarity=0.774 Sum_probs=9.9
Q ss_pred cceeeCCCCcccc
Q psy1452 160 FRVMCLGCDYEID 172 (268)
Q Consensus 160 ~~~~C~~C~~~~~ 172 (268)
-...|..|+.+..
T Consensus 27 v~Y~C~~CG~~~e 39 (70)
T 1twf_L 27 LKYICAECSSKLS 39 (70)
T ss_dssp CCEECSSSCCEEC
T ss_pred EEEECCCCCCcce
Confidence 3568999998763
No 22
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=64.23 E-value=2.9 Score=34.67 Aligned_cols=13 Identities=23% Similarity=0.340 Sum_probs=11.0
Q ss_pred ccceeeCCCCccc
Q psy1452 159 AFRVMCLGCDYEI 171 (268)
Q Consensus 159 ~~~~~C~~C~~~~ 171 (268)
...++|..||..+
T Consensus 169 ~~~~~C~~CG~i~ 181 (202)
T 1yuz_A 169 DKFHLCPICGYIH 181 (202)
T ss_dssp CCEEECSSSCCEE
T ss_pred CcEEEECCCCCEE
Confidence 4579999999876
No 23
>1pno_A NAD(P) transhydrogenase subunit beta; nucleotide binding fold, oxidoreductase; HET: NAP; 2.10A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1pnq_A* 1xlt_C* 2oor_C* 1ptj_C* 2oo5_C*
Probab=63.37 E-value=1.6 Score=35.23 Aligned_cols=41 Identities=17% Similarity=0.379 Sum_probs=32.9
Q ss_pred cEEEeCCCCChH---HHHHHHHHhhhCCEEEEEccccccccccc
Q psy1452 225 DIVFFGDNIPRH---RMEKIDHLVRSCDGVLVLGSSLTVSFSKS 265 (268)
Q Consensus 225 ~Vv~fgE~~~~~---~~~~~~~~~~~~DlllviGTSl~V~p~~~ 265 (268)
||+|-.-.+|.+ .++.+...+.++|++||||..-.|.|++.
T Consensus 73 NVLLAEA~VPYd~v~EMdeIN~df~~tDv~lVIGANDvvNpaA~ 116 (180)
T 1pno_A 73 NVLLAEANVPYDEVFELEEINSSFQTADVAFVIGANDVTNPAAK 116 (180)
T ss_dssp HHHHHHTTCCGGGEEEHHHHGGGGGGCSEEEEESCCGGGCGGGT
T ss_pred eEEEEeeCCCHHHHhhHHHHhhhhhhcCEEEEeccccccCchhc
Confidence 666655555544 56788889999999999999999999975
No 24
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=61.28 E-value=4.4 Score=31.47 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=16.4
Q ss_pred eEEecccccceeeCCCCcccchh
Q psy1452 152 VIEMHGTAFRVMCLGCDYEIDRH 174 (268)
Q Consensus 152 v~elHG~~~~~~C~~C~~~~~~~ 174 (268)
-.++.---..++|.+|+..+...
T Consensus 61 ~L~i~~~p~~~~C~~CG~~~~~~ 83 (139)
T 3a43_A 61 EIEFVEEEAVFKCRNCNYEWKLK 83 (139)
T ss_dssp EEEEEEECCEEEETTTCCEEEGG
T ss_pred EEEEEecCCcEECCCCCCEEecc
Confidence 44555555678999999987543
No 25
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=60.34 E-value=4.7 Score=25.26 Aligned_cols=14 Identities=36% Similarity=0.764 Sum_probs=11.2
Q ss_pred ccceeeCCCCcccc
Q psy1452 159 AFRVMCLGCDYEID 172 (268)
Q Consensus 159 ~~~~~C~~C~~~~~ 172 (268)
+...+|..|+..++
T Consensus 2 m~~y~C~vCGyvyd 15 (46)
T 6rxn_A 2 MQKYVCNVCGYEYD 15 (46)
T ss_dssp CCCEEETTTCCEEC
T ss_pred CCEEECCCCCeEEe
Confidence 45679999998875
No 26
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=60.04 E-value=3.3 Score=26.03 Aligned_cols=13 Identities=15% Similarity=0.156 Sum_probs=9.0
Q ss_pred ceeeCCCCcccch
Q psy1452 161 RVMCLGCDYEIDR 173 (268)
Q Consensus 161 ~~~C~~C~~~~~~ 173 (268)
...|..|++..+.
T Consensus 3 iY~C~rCg~~fs~ 15 (48)
T 4ayb_P 3 VYRCGKCWKTFTD 15 (48)
T ss_dssp --CCCCTTTTCCC
T ss_pred EEEeeccCCCccH
Confidence 4579999998753
No 27
>2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductas; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A* 1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C*
Probab=59.51 E-value=1.7 Score=35.76 Aligned_cols=42 Identities=17% Similarity=0.351 Sum_probs=33.5
Q ss_pred ccEEEeCCCCChH---HHHHHHHHhhhCCEEEEEccccccccccc
Q psy1452 224 PDIVFFGDNIPRH---RMEKIDHLVRSCDGVLVLGSSLTVSFSKS 265 (268)
Q Consensus 224 P~Vv~fgE~~~~~---~~~~~~~~~~~~DlllviGTSl~V~p~~~ 265 (268)
.||+|=.-.+|.+ .++++...+.++|++||||..-.|.|++.
T Consensus 95 MNVLLAEA~VPYd~v~EMdeIN~df~~tDv~lVIGANDvVNPaA~ 139 (203)
T 2fsv_C 95 MNVLLAEANVPYDEVFELEEINSSFQTADVAFVIGANDVTNPAAK 139 (203)
T ss_dssp HHHHHHHTTCCGGGEEEHHHHGGGSTTCSEEEEESCCGGGCGGGT
T ss_pred ccEEEEEecCCHHHHhhHHHHhhhhhhcCEEEEeccccccCchhh
Confidence 3666655556644 56778889999999999999999999975
No 28
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=57.56 E-value=14 Score=23.86 Aligned_cols=13 Identities=31% Similarity=0.649 Sum_probs=10.6
Q ss_pred cceeeCCCCcccc
Q psy1452 160 FRVMCLGCDYEID 172 (268)
Q Consensus 160 ~~~~C~~C~~~~~ 172 (268)
...+|..|+..|+
T Consensus 2 ~~y~C~vCGyvYd 14 (54)
T 4rxn_A 2 KKYTCTVCGYIYD 14 (54)
T ss_dssp CCEEETTTCCEEC
T ss_pred CceECCCCCeEEC
Confidence 4679999998875
No 29
>1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold reverse binding of N oxidoreductase; HET: NAP; 2.00A {Homo sapiens} SCOP: c.31.1.4 PDB: 1pt9_A* 1u31_A*
Probab=57.19 E-value=1.7 Score=35.89 Aligned_cols=42 Identities=26% Similarity=0.418 Sum_probs=33.4
Q ss_pred ccEEEeCCCCChH---HHHHHHHHhhhCCEEEEEccccccccccc
Q psy1452 224 PDIVFFGDNIPRH---RMEKIDHLVRSCDGVLVLGSSLTVSFSKS 265 (268)
Q Consensus 224 P~Vv~fgE~~~~~---~~~~~~~~~~~~DlllviGTSl~V~p~~~ 265 (268)
.||+|=.-.+|.+ .++++...+.++|++||||..-.|.|++.
T Consensus 94 MNVLLAEA~VPYd~v~EMdeIN~df~~tDv~lVIGANDvVNPaA~ 138 (207)
T 1djl_A 94 LNVLLAEAGVPYDIVLEMDEINHDFPDTDLVLVIGANDTVNSAAQ 138 (207)
T ss_dssp HHHHHHHTTCCGGGEEEHHHHGGGGGGCSEEEEESCCGGGCTHHH
T ss_pred CcEEEEEeCCCHHHHhhHHHHhhhhhhcCEEEEeccccccCCccc
Confidence 3666655556644 56788889999999999999999999874
No 30
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=56.66 E-value=4 Score=32.86 Aligned_cols=13 Identities=23% Similarity=0.421 Sum_probs=10.4
Q ss_pred cceeeCCCCcccc
Q psy1452 160 FRVMCLGCDYEID 172 (268)
Q Consensus 160 ~~~~C~~C~~~~~ 172 (268)
..++|..||..+.
T Consensus 137 ~~~~C~~CG~i~~ 149 (170)
T 3pwf_A 137 KVYICPICGYTAV 149 (170)
T ss_dssp CEEECTTTCCEEE
T ss_pred CeeEeCCCCCeeC
Confidence 4678999999773
No 31
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=56.32 E-value=15 Score=25.07 Aligned_cols=16 Identities=19% Similarity=0.372 Sum_probs=12.7
Q ss_pred ccccceeeCCCCcccc
Q psy1452 157 GTAFRVMCLGCDYEID 172 (268)
Q Consensus 157 G~~~~~~C~~C~~~~~ 172 (268)
..+..++|..|+..++
T Consensus 3 ~~m~~y~C~vCGyiYd 18 (70)
T 1dx8_A 3 IDEGKYECEACGYIYE 18 (70)
T ss_dssp CCSSCEEETTTCCEEC
T ss_pred CCCceEEeCCCCEEEc
Confidence 3466799999998874
No 32
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=55.20 E-value=12 Score=26.30 Aligned_cols=14 Identities=29% Similarity=0.674 Sum_probs=11.7
Q ss_pred ccceeeCCCCcccc
Q psy1452 159 AFRVMCLGCDYEID 172 (268)
Q Consensus 159 ~~~~~C~~C~~~~~ 172 (268)
...++|..|+..|+
T Consensus 25 m~~y~C~vCGyvYD 38 (81)
T 2kn9_A 25 YKLFRCIQCGFEYD 38 (81)
T ss_dssp CCEEEETTTCCEEE
T ss_pred cceEEeCCCCEEEc
Confidence 56799999998875
No 33
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=54.08 E-value=15 Score=23.68 Aligned_cols=13 Identities=23% Similarity=0.613 Sum_probs=10.7
Q ss_pred cceeeCCCCcccc
Q psy1452 160 FRVMCLGCDYEID 172 (268)
Q Consensus 160 ~~~~C~~C~~~~~ 172 (268)
...+|..|+..++
T Consensus 2 ~~y~C~~CGyvYd 14 (55)
T 2v3b_B 2 RKWQCVVCGFIYD 14 (55)
T ss_dssp CEEEETTTCCEEE
T ss_pred CcEEeCCCCeEEC
Confidence 4689999998875
No 34
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=53.26 E-value=14 Score=23.66 Aligned_cols=13 Identities=38% Similarity=0.705 Sum_probs=10.6
Q ss_pred cceeeCCCCcccc
Q psy1452 160 FRVMCLGCDYEID 172 (268)
Q Consensus 160 ~~~~C~~C~~~~~ 172 (268)
...+|..|+..|+
T Consensus 2 ~~y~C~~CGyvYd 14 (52)
T 1e8j_A 2 DIYVCTVCGYEYD 14 (52)
T ss_dssp CCEECSSSCCCCC
T ss_pred CcEEeCCCCeEEc
Confidence 4689999998874
No 35
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=52.18 E-value=8.4 Score=25.81 Aligned_cols=11 Identities=18% Similarity=0.507 Sum_probs=8.5
Q ss_pred ceeeCCCCccc
Q psy1452 161 RVMCLGCDYEI 171 (268)
Q Consensus 161 ~~~C~~C~~~~ 171 (268)
...|..|+.+.
T Consensus 21 ~Y~C~~Cg~~~ 31 (63)
T 3h0g_L 21 IYLCADCGARN 31 (63)
T ss_dssp CCBCSSSCCBC
T ss_pred EEECCCCCCee
Confidence 46799999875
No 36
>1d4o_A NADP(H) transhydrogenase; nucleotide-binding fold, protein-NADP(H) complex, inverted binding of NADP(H), oxidoreductase; HET: NAP; 1.21A {Bos taurus} SCOP: c.31.1.4
Probab=51.77 E-value=6.1 Score=31.91 Aligned_cols=29 Identities=34% Similarity=0.454 Sum_probs=25.5
Q ss_pred HHHHHHHHhhhCCEEEEEccccccccccc
Q psy1452 237 RMEKIDHLVRSCDGVLVLGSSLTVSFSKS 265 (268)
Q Consensus 237 ~~~~~~~~~~~~DlllviGTSl~V~p~~~ 265 (268)
.++.+...+.++|++||||..-.|.|++.
T Consensus 87 EMdeIN~df~~tDv~lVIGANDvVNPaA~ 115 (184)
T 1d4o_A 87 EMDEINHDFPDTDLVLVIGANDTVNSAAQ 115 (184)
T ss_dssp EHHHHGGGGGGCSEEEEESCSGGGCTHHH
T ss_pred hHHHHhhhhhhcCEEEEecCCccCCCccc
Confidence 36777789999999999999999999874
No 37
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=50.73 E-value=4.4 Score=29.83 Aligned_cols=14 Identities=36% Similarity=0.610 Sum_probs=12.2
Q ss_pred CcEEEEeCcccccc
Q psy1452 50 NKILVVTGAGISTE 63 (268)
Q Consensus 50 ~~ivi~tGAGiS~~ 63 (268)
++|++.+|+|+|++
T Consensus 4 kkIll~Cg~G~sTS 17 (106)
T 1e2b_A 4 KHIYLFSSAGMSTS 17 (106)
T ss_dssp EEEEEECSSSTTTH
T ss_pred cEEEEECCCchhHH
Confidence 47999999999875
No 38
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=49.46 E-value=3.8 Score=28.95 Aligned_cols=11 Identities=18% Similarity=0.576 Sum_probs=7.2
Q ss_pred ceeeCCCCccc
Q psy1452 161 RVMCLGCDYEI 171 (268)
Q Consensus 161 ~~~C~~C~~~~ 171 (268)
..+|..|+..+
T Consensus 18 ~~~C~~C~~~~ 28 (81)
T 2jrp_A 18 TAHCETCAKDF 28 (81)
T ss_dssp EEECTTTCCEE
T ss_pred ceECccccccC
Confidence 45677777765
No 39
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=47.69 E-value=21 Score=25.42 Aligned_cols=14 Identities=21% Similarity=0.626 Sum_probs=11.7
Q ss_pred ccceeeCCCCcccc
Q psy1452 159 AFRVMCLGCDYEID 172 (268)
Q Consensus 159 ~~~~~C~~C~~~~~ 172 (268)
+..++|..|+..|+
T Consensus 33 m~~y~C~vCGyvYD 46 (87)
T 1s24_A 33 YLKWICITCGHIYD 46 (87)
T ss_dssp CCEEEETTTTEEEE
T ss_pred CceEECCCCCeEec
Confidence 56799999998875
No 40
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=43.95 E-value=6.9 Score=30.60 Aligned_cols=16 Identities=13% Similarity=0.312 Sum_probs=10.9
Q ss_pred cccccceeeCCCCccc
Q psy1452 156 HGTAFRVMCLGCDYEI 171 (268)
Q Consensus 156 HG~~~~~~C~~C~~~~ 171 (268)
.|.+...+|..|++.+
T Consensus 42 ~g~L~~~rC~~CG~~~ 57 (145)
T 2gnr_A 42 QNKIIGSKCSKCGRIF 57 (145)
T ss_dssp TTCCEEEECTTTCCEE
T ss_pred CCEEEEEEECCCCcEE
Confidence 3555566888888765
No 41
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=43.63 E-value=8 Score=28.61 Aligned_cols=12 Identities=17% Similarity=0.526 Sum_probs=9.9
Q ss_pred cceeeCCCCccc
Q psy1452 160 FRVMCLGCDYEI 171 (268)
Q Consensus 160 ~~~~C~~C~~~~ 171 (268)
...+|-+||..+
T Consensus 66 ~p~~C~~CG~~F 77 (105)
T 2gmg_A 66 KPAQCRKCGFVF 77 (105)
T ss_dssp CCCBBTTTCCBC
T ss_pred ECcChhhCcCee
Confidence 467899999876
No 42
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=43.29 E-value=6.2 Score=28.79 Aligned_cols=12 Identities=42% Similarity=1.049 Sum_probs=8.5
Q ss_pred CCCCCCCCCeec
Q psy1452 212 VPQCPHCHGDLK 223 (268)
Q Consensus 212 iP~Cp~Cgg~lr 223 (268)
.+.||.|+.+|.
T Consensus 61 ~a~CPdC~q~Le 72 (101)
T 2jne_A 61 KALCPDCHQPLQ 72 (101)
T ss_dssp EEECTTTCSBCE
T ss_pred cccCcchhhHHH
Confidence 567888876654
No 43
>2bru_C NAD(P) transhydrogenase subunit beta; paramagnetic transhydrogenase, inner membrane, membrane, oxidoreductase, transmembrane; HET: NAD NAP; NMR {Escherichia coli}
Probab=42.84 E-value=5.7 Score=32.10 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=22.5
Q ss_pred HHHHHhhhCCEEEEEccccccccccc
Q psy1452 240 KIDHLVRSCDGVLVLGSSLTVSFSKS 265 (268)
Q Consensus 240 ~~~~~~~~~DlllviGTSl~V~p~~~ 265 (268)
.+...+.++|++||||..-.|.|++.
T Consensus 98 eIN~df~~tDv~lVIGANDvVNPaA~ 123 (186)
T 2bru_C 98 EINDDFADTDTVLVIGANDTVNPAAQ 123 (186)
T ss_dssp CCHHHHHHCSEEEECBCGGGGCGGGT
T ss_pred HHhcccccCCEEEEeccccccCcccc
Confidence 34567889999999999999999875
No 44
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=40.25 E-value=8.5 Score=29.99 Aligned_cols=14 Identities=14% Similarity=0.318 Sum_probs=8.4
Q ss_pred cccceeeCCCCccc
Q psy1452 158 TAFRVMCLGCDYEI 171 (268)
Q Consensus 158 ~~~~~~C~~C~~~~ 171 (268)
.+.-.+|..|++.+
T Consensus 44 rL~~~rC~~CG~~~ 57 (145)
T 3irb_A 44 KIIGSKCSKCGRIF 57 (145)
T ss_dssp CCEEEECTTTCCEE
T ss_pred eEEEEEeCCCCcEE
Confidence 33345677777654
No 45
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=39.25 E-value=27 Score=22.25 Aligned_cols=12 Identities=33% Similarity=0.797 Sum_probs=9.9
Q ss_pred ceeeCCCCcccc
Q psy1452 161 RVMCLGCDYEID 172 (268)
Q Consensus 161 ~~~C~~C~~~~~ 172 (268)
.++|..|+..|+
T Consensus 2 ~~~C~~CGyvYd 13 (52)
T 1yk4_A 2 KLSCKICGYIYD 13 (52)
T ss_dssp EEEESSSSCEEE
T ss_pred cEEeCCCCeEEC
Confidence 478999998875
No 46
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=38.81 E-value=16 Score=21.08 Aligned_cols=20 Identities=15% Similarity=0.228 Sum_probs=14.4
Q ss_pred ecccccceeeCCCCcccchh
Q psy1452 155 MHGTAFRVMCLGCDYEIDRH 174 (268)
Q Consensus 155 lHG~~~~~~C~~C~~~~~~~ 174 (268)
.|-.-....|..|++.+...
T Consensus 4 ~h~~~k~~~C~~C~k~f~~~ 23 (45)
T 2epq_A 4 GSSGEKPYSCPVCGLRFKRK 23 (45)
T ss_dssp CCSSCCSSEETTTTEECSCH
T ss_pred CcCCCCCCcCCCCCcccCCH
Confidence 45555678999999887543
No 47
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=38.60 E-value=30 Score=32.96 Aligned_cols=29 Identities=17% Similarity=0.268 Sum_probs=25.6
Q ss_pred CCCHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy1452 33 PVEESDINKLKQFIEKYNKILVVTGAGIS 61 (268)
Q Consensus 33 ~~~~~~l~~l~~~l~~a~~ivi~tGAGiS 61 (268)
......+++++++|++|++.+|++|.|.+
T Consensus 196 ~~~~~~i~~~~~~l~~A~rPvIl~G~g~~ 224 (603)
T 4feg_A 196 EPDVQAVTRLTQTLLAAERPLIYYGIGAR 224 (603)
T ss_dssp BCCHHHHHHHHHHHHHCSSEEEEECGGGT
T ss_pred CCCHHHHHHHHHHHhcCCCeEEEECCCch
Confidence 34567899999999999999999999984
No 48
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=38.36 E-value=33 Score=32.24 Aligned_cols=28 Identities=29% Similarity=0.522 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy1452 34 VEESDINKLKQFIEKYNKILVVTGAGIS 61 (268)
Q Consensus 34 ~~~~~l~~l~~~l~~a~~ivi~tGAGiS 61 (268)
.....+++++++|++|++.+|++|.|.+
T Consensus 186 ~~~~~i~~~~~~l~~A~rpvIl~G~g~~ 213 (549)
T 3eya_A 186 PEEEELRKLAQLLRYSSNIALMCGSGCA 213 (549)
T ss_dssp CCHHHHHHHHHHHHTCCSEEEEECGGGT
T ss_pred CCHHHHHHHHHHHHhCCCcEEEECCCch
Confidence 3467899999999999999999999975
No 49
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=38.17 E-value=26 Score=30.76 Aligned_cols=35 Identities=14% Similarity=0.272 Sum_probs=23.2
Q ss_pred ccEEEeCCC-CC-hHHHHHHHHHhhhCCEEEEEcccc
Q psy1452 224 PDIVFFGDN-IP-RHRMEKIDHLVRSCDGVLVLGSSL 258 (268)
Q Consensus 224 P~Vv~fgE~-~~-~~~~~~~~~~~~~~DlllviGTSl 258 (268)
|++..|++= +. ..+-+++.+.+.++|++||||..=
T Consensus 184 p~~~~~~tIC~AT~~RQ~av~~la~~~D~miVVGg~n 220 (297)
T 3dnf_A 184 KEVKVINTICNATSLRQESVKKLAPEVDVMIIIGGKN 220 (297)
T ss_dssp SEEEEECCCCSHHHHHHHHHHHHGGGSSEEEEESCTT
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHhhCCEEEEECCCC
Confidence 355666552 22 335556677778999999999843
No 50
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=37.22 E-value=20 Score=32.05 Aligned_cols=42 Identities=14% Similarity=0.056 Sum_probs=10.8
Q ss_pred CCCCCCCCCeecccEEEeCCCCChHHHHHHHHHh-hhCCEEEEE
Q psy1452 212 VPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLV-RSCDGVLVL 254 (268)
Q Consensus 212 iP~Cp~Cgg~lrP~Vv~fgE~~~~~~~~~~~~~~-~~~Dlllvi 254 (268)
.+.|.+|.....=|.+.-- .++.+.+.+..+.+ ..+|++|.|
T Consensus 36 ~~~C~RC~~l~hy~~~~~v-~~~~e~f~~~L~~~~~~~~lil~V 78 (369)
T 3ec1_A 36 EVICQRCFRLKHYNEVQDV-PLDDDDFLSMLHRIGESKALVVNI 78 (369)
T ss_dssp ------------------------CHHHHHHHHHHHHCCEEEEE
T ss_pred CEEchhHHHhhccccccCC-cCCHHHHHHHHHHhhccCcEEEEE
Confidence 5789999754332222211 12333444444444 677777765
No 51
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=37.17 E-value=24 Score=28.09 Aligned_cols=31 Identities=26% Similarity=0.308 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEeCccccccc
Q psy1452 34 VEESDINKLKQFIEKYNKILVVTGAGISTES 64 (268)
Q Consensus 34 ~~~~~l~~l~~~l~~a~~ivi~tGAGiS~~s 64 (268)
...+.++++++.|.+++.-|++.|.|-|...
T Consensus 29 l~~~~i~~~~~~i~~a~~~I~i~G~G~S~~~ 59 (201)
T 3fxa_A 29 TSEEALVKTVEKIAECTGKIVVAGCGTSGVA 59 (201)
T ss_dssp SCHHHHHHHHHHHHHCSSCEEEECCTHHHHH
T ss_pred cCHHHHHHHHHHHHhcCCcEEEEEecHHHHH
Confidence 4467899999999999656678889988554
No 52
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=34.66 E-value=13 Score=29.44 Aligned_cols=16 Identities=13% Similarity=0.104 Sum_probs=14.1
Q ss_pred HHhhhCCEEEEEcccc
Q psy1452 243 HLVRSCDGVLVLGSSL 258 (268)
Q Consensus 243 ~~~~~~DlllviGTSl 258 (268)
+.+.+||+||++|+.+
T Consensus 103 ~~~~~aDlvl~iG~~~ 118 (170)
T 3cf4_G 103 DGNGNYDMIITIGFKK 118 (170)
T ss_dssp SSSCCCSEEEEESCCH
T ss_pred HHhhcCCEEEEECCcc
Confidence 4578999999999988
No 53
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=34.00 E-value=10 Score=28.01 Aligned_cols=14 Identities=36% Similarity=0.662 Sum_probs=12.3
Q ss_pred CcEEEEeCcccccc
Q psy1452 50 NKILVVTGAGISTE 63 (268)
Q Consensus 50 ~~ivi~tGAGiS~~ 63 (268)
++|++.+|+|+|++
T Consensus 22 kkIlvvC~sG~gTS 35 (113)
T 1tvm_A 22 RKIIVACGGAVATS 35 (113)
T ss_dssp EEEEEESCSCSSHH
T ss_pred cEEEEECCCCHHHH
Confidence 47999999999976
No 54
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=33.94 E-value=28 Score=31.08 Aligned_cols=38 Identities=13% Similarity=0.142 Sum_probs=10.4
Q ss_pred CCCCCCCCCeecccEEEeCCCC----ChHHHHHHHHHhh-hCCEEEEE
Q psy1452 212 VPQCPHCHGDLKPDIVFFGDNI----PRHRMEKIDHLVR-SCDGVLVL 254 (268)
Q Consensus 212 iP~Cp~Cgg~lrP~Vv~fgE~~----~~~~~~~~~~~~~-~~Dlllvi 254 (268)
.+.|.+|-.... |++.. +.+.+.+..+.+. .+|++|.|
T Consensus 34 ~~~C~Rc~~l~h-----y~~~~~v~~~~e~f~~~l~~i~~~~~~il~V 76 (368)
T 3h2y_A 34 QVICQRCFRLKH-----YNEIQDVSLTDDDFLRILNGIGKSDALVVKI 76 (368)
T ss_dssp ---------------------------CHHHHHHHHHHHHSCCEEEEE
T ss_pred CcEEhhhhhhhc-----cCccccCCCCHHHHHHHHHHHhccCcEEEEE
Confidence 688999975433 44432 3344555555554 45566554
No 55
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=33.30 E-value=35 Score=32.12 Aligned_cols=28 Identities=18% Similarity=0.391 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy1452 34 VEESDINKLKQFIEKYNKILVVTGAGIS 61 (268)
Q Consensus 34 ~~~~~l~~l~~~l~~a~~ivi~tGAGiS 61 (268)
.....++++++.|++|++.+|++|.|..
T Consensus 198 ~~~~~i~~~~~~l~~a~rpvIl~G~g~~ 225 (568)
T 2c31_A 198 PAEDAIARAADLIKNAKRPVIMLGKGAA 225 (568)
T ss_dssp CCHHHHHHHHHHHHTCSSEEEEECHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCEEEECcccc
Confidence 4567899999999999999999999975
No 56
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=33.18 E-value=14 Score=29.69 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=19.1
Q ss_pred HHHHH-HHHHHhCCcEEEEeCcccc
Q psy1452 38 DINKL-KQFIEKYNKILVVTGAGIS 61 (268)
Q Consensus 38 ~l~~l-~~~l~~a~~ivi~tGAGiS 61 (268)
.++++ +++|++|++-||++|. +.
T Consensus 23 ~i~~a~a~lI~~AkRPvIl~Gg-v~ 46 (174)
T 1ytl_A 23 EKGKPVANMIKKAKRPLLIVGP-DM 46 (174)
T ss_dssp CCHHHHHHHHHHCSSEEEEECS-CC
T ss_pred cHHHHHHHHHHcCCCCEEEECC-CC
Confidence 48888 9999999999998887 54
No 57
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=32.49 E-value=15 Score=27.13 Aligned_cols=15 Identities=20% Similarity=0.206 Sum_probs=12.5
Q ss_pred CCcEEEEeCcccccc
Q psy1452 49 YNKILVVTGAGISTE 63 (268)
Q Consensus 49 a~~ivi~tGAGiS~~ 63 (268)
.-+|+++++||+|++
T Consensus 6 ~mkIlL~C~aGmSTs 20 (108)
T 3nbm_A 6 ELKVLVLCAGSGTSA 20 (108)
T ss_dssp CEEEEEEESSSSHHH
T ss_pred CceEEEECCCCCCHH
Confidence 347999999999975
No 58
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=32.42 E-value=27 Score=26.76 Aligned_cols=52 Identities=12% Similarity=0.153 Sum_probs=34.7
Q ss_pred CCCCCHHHHHHHHhHhcCCCcEEEeccCcchhhhhcCCceEEec--ccccceeeCCCCcccch
Q psy1452 113 SFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMH--GTAFRVMCLGCDYEIDR 173 (268)
Q Consensus 113 ~~~P~~~H~~L~~L~~~~~~~~iiTqNiD~L~~~aG~~~v~elH--G~~~~~~C~~C~~~~~~ 173 (268)
...+.-.|+.|..|.+.|.+..+-..|-- ..|++. +.-.++.|..|++..+.
T Consensus 49 ~is~~TVYR~L~~L~e~Glv~~i~~~~~~---------~~Y~~~~~~~H~HliC~~Cg~v~~~ 102 (145)
T 3eyy_A 49 GINISTVYRTLELLEELGLVSHAHLGHGA---------PTYHLADRHHHIHLVCRDCTNVIEA 102 (145)
T ss_dssp TCCHHHHHHHHHHHHHHTSEEEEECGGGC---------EEEEETTSCCSEEEEESSSSCEEEE
T ss_pred CCCHhHHHHHHHHHHHCCcEEEEEeCCCc---------eEEEeCCCCCceEEEECCCCCEEEe
Confidence 44566789999999999988776543311 123321 23457899999987654
No 59
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=32.37 E-value=40 Score=25.52 Aligned_cols=55 Identities=9% Similarity=0.231 Sum_probs=34.9
Q ss_pred CCCCCHHHHHHHHhHhcCCCcEEEeccCcchhhhhcCCceEEecccccceeeCCCCcccch
Q psy1452 113 SFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEIDR 173 (268)
Q Consensus 113 ~~~P~~~H~~L~~L~~~~~~~~iiTqNiD~L~~~aG~~~v~elHG~~~~~~C~~C~~~~~~ 173 (268)
...+.-.|+.|..|++.|.+..+-..+--..|+.... ++.-.++.|..|++..+.
T Consensus 45 ~is~aTVYR~L~~L~e~Glv~~~~~~~g~~~Y~~~~~------~~~H~HliC~~Cg~v~~~ 99 (139)
T 3mwm_A 45 AVGLTTVYRTLQSLADAGEVDVLRTAEGESVYRRCST------GDHHHHLVCRACGKAVEV 99 (139)
T ss_dssp CCCHHHHHHHHHHHHHTTSSEEEECTTSCEEEECCSC------SSCCEEEEETTTCCEEEE
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEcCCCceEEEECCC------CCCccEEEECCCCCEeec
Confidence 4456678999999999998876654332222222110 022356899999987654
No 60
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=32.32 E-value=45 Score=25.98 Aligned_cols=31 Identities=19% Similarity=0.329 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEeCcccccccC
Q psy1452 34 VEESDINKLKQFIEKYNKILVVTGAGISTESG 65 (268)
Q Consensus 34 ~~~~~l~~l~~~l~~a~~ivi~tGAGiS~~sG 65 (268)
.....++++++.|.++++ |++.|.|-|...+
T Consensus 24 l~~~~l~~~~~~i~~a~~-I~i~G~G~S~~~a 54 (187)
T 3sho_A 24 TQPEAIEAAVEAICRADH-VIVVGMGFSAAVA 54 (187)
T ss_dssp CCHHHHHHHHHHHHHCSE-EEEECCGGGHHHH
T ss_pred CCHHHHHHHHHHHHhCCE-EEEEecCchHHHH
Confidence 456789999999999974 5677888886543
No 61
>1n5g_A 38-MER of DNA polymerase alpha catalytic subunit; zinc finger protein, DNA binding domain, transferase; NMR {Synthetic} SCOP: g.67.1.1
Probab=31.78 E-value=8.9 Score=22.78 Aligned_cols=14 Identities=43% Similarity=1.058 Sum_probs=11.4
Q ss_pred CCCCCCCCC-Ceecc
Q psy1452 211 HVPQCPHCH-GDLKP 224 (268)
Q Consensus 211 ~iP~Cp~Cg-g~lrP 224 (268)
..|.||.|+ |.|++
T Consensus 23 ~gp~C~~C~~g~l~~ 37 (38)
T 1n5g_A 23 TGPLCPACMKATLQP 37 (38)
T ss_dssp SCTTSTTCHHHHHTT
T ss_pred CCccCCCcCceEeEe
Confidence 479999998 87765
No 62
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=30.81 E-value=23 Score=28.10 Aligned_cols=29 Identities=10% Similarity=0.290 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhCCcEEEEeCcccccccCCC
Q psy1452 37 SDINKLKQFIEKYNKILVVTGAGISTESGIP 67 (268)
Q Consensus 37 ~~l~~l~~~l~~a~~ivi~tGAGiS~~sGiP 67 (268)
+..+++.+++++++.-||++|||+++ +||
T Consensus 38 R~p~~~~~~~~~a~~~ViIa~AG~aa--~Lp 66 (157)
T 2ywx_A 38 RTPELVEEIVKNSKADVFIAIAGLAA--HLP 66 (157)
T ss_dssp TCHHHHHHHHHHCCCSEEEEEEESSC--CHH
T ss_pred CCHHHHHHHHHhcCCCEEEEEcCchh--hhH
Confidence 45677788888887789999999874 455
No 63
>3kzf_A Carbamate kinase; arginine dihydrolase pathway, giardia LAMB target, transferase; 3.00A {Giardia lamblia atcc 50803}
Probab=30.72 E-value=17 Score=32.28 Aligned_cols=53 Identities=26% Similarity=0.434 Sum_probs=30.8
Q ss_pred ccccCCCCCCCcccccCCCCCCCHHHHHHHHHHHHhCCcEEEEeCcccccccCCCCccC
Q psy1452 13 HFIVPPDVTSRSISFIPKHKPVEESDINKLKQFIEKYNKILVVTGAGISTESGIPDYRS 71 (268)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~a~~ivi~tGAGiS~~sGiP~fr~ 71 (268)
...+..|+---.=+.+|.|+|..--+.+.+..+|. .+.|+|++|-| |||-+.+
T Consensus 152 ~~~~~ed~grg~RrvV~sP~P~~iVe~~~I~~LL~-~G~IvI~aGGg-----GiPv~~~ 204 (317)
T 3kzf_A 152 GKILREDAGRGWRVVVPSPRPLEIVEYGVIKTLID-NNVLVICTNGG-----GIPCKRE 204 (317)
T ss_dssp ----------CCCCEECCCCEEEETTHHHHHHHHH-TTCEEECCGGG-----CEEEEEC
T ss_pred CCeEeecCCCCeeeecCCCCCcceECHHHHHHHHH-CCCEEEEeCCC-----CCCcccC
Confidence 34445554433334788888877667777777776 67888888766 7775554
No 64
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=30.66 E-value=30 Score=26.92 Aligned_cols=28 Identities=21% Similarity=0.171 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhCCcEEEEeCcccccccC
Q psy1452 38 DINKLKQFIEKYNKILVVTGAGISTESG 65 (268)
Q Consensus 38 ~l~~l~~~l~~a~~ivi~tGAGiS~~sG 65 (268)
.++++++.|.+++.-|++.|.|-|...+
T Consensus 37 ~i~~~~~~i~~a~~~I~i~G~G~S~~~a 64 (183)
T 2xhz_A 37 NFTLACEKMFWCKGKVVVMGMGASGHIG 64 (183)
T ss_dssp HHHHHHHHHHTCSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhCCCeEEEEeecHHHHHH
Confidence 8999999999998566778999886543
No 65
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=30.65 E-value=36 Score=26.17 Aligned_cols=52 Identities=17% Similarity=0.235 Sum_probs=36.1
Q ss_pred CCCCCHHHHHHHHhHhcCCCcEEEeccCcchhhhhcCCceEEe--cccccceeeCCCCcccch
Q psy1452 113 SFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEM--HGTAFRVMCLGCDYEIDR 173 (268)
Q Consensus 113 ~~~P~~~H~~L~~L~~~~~~~~iiTqNiD~L~~~aG~~~v~el--HG~~~~~~C~~C~~~~~~ 173 (268)
...+.-.|+.|..|++.|.+..+-..|-- ..|++ +..-.++.|..|++..+.
T Consensus 58 ~is~aTVYR~L~~L~e~Glv~~~~~~~~~---------~~Y~~~~~~~H~HliC~~Cg~v~~~ 111 (150)
T 2xig_A 58 NTSISSVYRILNFLEKENFISVLETSKSG---------RRYEIAAKEHHDHIICLHCGKIIEF 111 (150)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEEETTTE---------EEEEESCSCCCEEEEETTTCCEEEE
T ss_pred CCCHhhHHHHHHHHHHCCcEEEEEeCCCc---------eEEEecCCCCceEEEECCCCCEEEe
Confidence 44666789999999999988777655421 23333 123367999999987654
No 66
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=30.19 E-value=42 Score=31.67 Aligned_cols=28 Identities=14% Similarity=0.288 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy1452 34 VEESDINKLKQFIEKYNKILVVTGAGIS 61 (268)
Q Consensus 34 ~~~~~l~~l~~~l~~a~~ivi~tGAGiS 61 (268)
.....++++++.|++|++.+|++|.|..
T Consensus 192 ~~~~~i~~~~~~l~~a~rpvil~G~g~~ 219 (566)
T 1ozh_A 192 APDDAIDQVAKLIAQAKNPIFLLGLMAS 219 (566)
T ss_dssp SCHHHHHHHHHHHHHCSSEEEEECGGGG
T ss_pred CCHHHHHHHHHHHHcCCCeEEEECCCcc
Confidence 4567899999999999999999999975
No 67
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=30.08 E-value=21 Score=28.62 Aligned_cols=27 Identities=30% Similarity=0.601 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHHHhCCcEEEEeCccccc
Q psy1452 35 EESDINKLKQFIEKYNKILVVTGAGIST 62 (268)
Q Consensus 35 ~~~~l~~l~~~l~~a~~ivi~tGAGiS~ 62 (268)
.....++++++.+. +--|+.|.-|..+
T Consensus 47 ~~~A~~eL~~~ae~-~iPVvtT~~g~g~ 73 (174)
T 1ytl_A 47 TDEMFERVKKFVEK-DITVVATGSAITR 73 (174)
T ss_dssp CHHHHHHHHHHHTS-SSEEEEETTHHHH
T ss_pred CccHHHHHHHHHHc-CCCEEEcccccCc
Confidence 34566778888887 8888888776554
No 68
>2yy8_A ATRM56, UPF0106 protein PH0461; DEEP trefoil knot, structural genomics, NPPSFA; HET: SAM MTA; 2.48A {Pyrococcus horikoshii}
Probab=29.98 E-value=25 Score=28.77 Aligned_cols=34 Identities=15% Similarity=0.420 Sum_probs=24.3
Q ss_pred cccEEEeCCCCChHHHHHHHHHhh-hCCEEEEEccc
Q psy1452 223 KPDIVFFGDNIPRHRMEKIDHLVR-SCDGVLVLGSS 257 (268)
Q Consensus 223 rP~Vv~fgE~~~~~~~~~~~~~~~-~~DlllviGTS 257 (268)
.-+..|||+++++ .++.+.+... .-|++||||..
T Consensus 77 VVHLTMYG~~i~d-vi~eIr~~~~~~~~iLVVVGae 111 (201)
T 2yy8_A 77 KVHLTMYGLHVDD-VIEELKEKLKKGEDFMIIVGAE 111 (201)
T ss_dssp EEEEEEEEEEHHH-HHHHHHHHHHTTCCEEEEECSS
T ss_pred EEEEecCCCchHH-HHHHHHhhcccCCCEEEEECCC
Confidence 4477899999764 4555554444 46999999975
No 69
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=29.30 E-value=40 Score=26.30 Aligned_cols=31 Identities=23% Similarity=0.325 Sum_probs=23.9
Q ss_pred CCCHHHHHHHHHHHHhCCcEEEEeCccccccc
Q psy1452 33 PVEESDINKLKQFIEKYNKILVVTGAGISTES 64 (268)
Q Consensus 33 ~~~~~~l~~l~~~l~~a~~ivi~tGAGiS~~s 64 (268)
......++++++.|.++++|+ +.|.|-|...
T Consensus 21 ~l~~~~i~~~~~~i~~a~~I~-i~G~G~S~~~ 51 (186)
T 1m3s_A 21 YISNEEADQLADHILSSHQIF-TAGAGRSGLM 51 (186)
T ss_dssp TCCHHHHHHHHHHHHHCSCEE-EECSHHHHHH
T ss_pred hcCHHHHHHHHHHHHcCCeEE-EEecCHHHHH
Confidence 345678999999999998655 5788887543
No 70
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=29.05 E-value=47 Score=31.43 Aligned_cols=27 Identities=22% Similarity=0.453 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy1452 35 EESDINKLKQFIEKYNKILVVTGAGIS 61 (268)
Q Consensus 35 ~~~~l~~l~~~l~~a~~ivi~tGAGiS 61 (268)
....+++++++|.+|++.+|++|.|..
T Consensus 200 ~~~~i~~~~~~l~~a~rpvIl~G~g~~ 226 (590)
T 1ybh_A 200 EDSHLEQIVRLISESKKPVLYVGGGCL 226 (590)
T ss_dssp CHHHHHHHHHHHHHCSSEEEEECGGGT
T ss_pred CHHHHHHHHHHHHhCCCcEEEECcccc
Confidence 567899999999999999999999974
No 71
>1vkr_A Mannitol-specific PTS system enzyme iiabc compone; phosphotransferase, transferase, kinase, sugar transport; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1vrv_A* 2few_B*
Probab=28.71 E-value=15 Score=27.80 Aligned_cols=17 Identities=29% Similarity=0.542 Sum_probs=13.9
Q ss_pred hCCcEEEEeCccccccc
Q psy1452 48 KYNKILVVTGAGISTES 64 (268)
Q Consensus 48 ~a~~ivi~tGAGiS~~s 64 (268)
.-++|++.+|+|++++.
T Consensus 12 ~~kkIlvVC~sGmgTS~ 28 (125)
T 1vkr_A 12 HVRKIIVACDAGMGSSA 28 (125)
T ss_dssp CCCEEEECCSSSSHHHH
T ss_pred cccEEEEECCCcHHHHH
Confidence 34689999999999863
No 72
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=28.33 E-value=41 Score=31.64 Aligned_cols=28 Identities=14% Similarity=0.280 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCcccccc
Q psy1452 36 ESDINKLKQFIEKYNKILVVTGAGISTE 63 (268)
Q Consensus 36 ~~~l~~l~~~l~~a~~ivi~tGAGiS~~ 63 (268)
...++++++.|.+|++.+|++|.|+..+
T Consensus 215 ~~~i~~~~~~l~~a~rpvil~G~g~~~~ 242 (570)
T 2vbf_A 215 QVILSKIEESLKNAQKPVVIAGHEVISF 242 (570)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCEEEECcCcccc
Confidence 5679999999999999999999998643
No 73
>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A
Probab=28.10 E-value=30 Score=29.64 Aligned_cols=30 Identities=20% Similarity=0.439 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEeCcccccc
Q psy1452 34 VEESDINKLKQFIEKYNKILVVTGAGISTE 63 (268)
Q Consensus 34 ~~~~~l~~l~~~l~~a~~ivi~tGAGiS~~ 63 (268)
.....+..|+++++.++.|.|+.|+|+..+
T Consensus 153 ~a~~g~~~L~~Lv~~a~~i~Im~GgGv~~~ 182 (256)
T 1twd_A 153 DALQGLSKIMELIAHRDAPIIMAGAGVRAE 182 (256)
T ss_dssp STTTTHHHHHHHHTSSSCCEEEEESSCCTT
T ss_pred CHHHHHHHHHHHHHhhCCcEEEecCCcCHH
Confidence 345678888888887779999999999753
No 74
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=27.06 E-value=35 Score=32.05 Aligned_cols=28 Identities=14% Similarity=0.296 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy1452 34 VEESDINKLKQFIEKYNKILVVTGAGIS 61 (268)
Q Consensus 34 ~~~~~l~~l~~~l~~a~~ivi~tGAGiS 61 (268)
.....++++++.|++|++.+|++|.|..
T Consensus 196 ~~~~~i~~~~~~l~~a~rpvIl~G~g~~ 223 (564)
T 2q28_A 196 PCPKSVTSAISLLAKAERPLIILGKGAA 223 (564)
T ss_dssp ECHHHHHHHHHHHHHCSSEEEEECHHHH
T ss_pred CCHHHHHHHHHHHHcCCCcEEEECcccc
Confidence 3457899999999999999999999975
No 75
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=26.95 E-value=20 Score=26.08 Aligned_cols=13 Identities=62% Similarity=0.935 Sum_probs=11.1
Q ss_pred cEEEEeCcccccc
Q psy1452 51 KILVVTGAGISTE 63 (268)
Q Consensus 51 ~ivi~tGAGiS~~ 63 (268)
+|++.+|+|+|++
T Consensus 6 kIlvvC~~G~~TS 18 (109)
T 2l2q_A 6 NILLVCGAGMSTS 18 (109)
T ss_dssp EEEEESSSSCSSC
T ss_pred EEEEECCChHhHH
Confidence 4899999999864
No 76
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=26.33 E-value=48 Score=31.14 Aligned_cols=28 Identities=18% Similarity=0.379 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy1452 34 VEESDINKLKQFIEKYNKILVVTGAGIS 61 (268)
Q Consensus 34 ~~~~~l~~l~~~l~~a~~ivi~tGAGiS 61 (268)
.....++++++.|++|++.+|++|.|..
T Consensus 189 ~~~~~v~~~~~~l~~a~rpvil~G~g~~ 216 (563)
T 2uz1_A 189 PDPADLDQALALLRKAERPVIVLGSEAS 216 (563)
T ss_dssp CCHHHHHHHHHHHHHCSSEEEEECHHHH
T ss_pred CCHHHHHHHHHHHHcCCCcEEEECCccc
Confidence 4467899999999999999999999975
No 77
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.26 E-value=23 Score=22.38 Aligned_cols=14 Identities=21% Similarity=0.486 Sum_probs=10.0
Q ss_pred CCCCCCCCC--eeccc
Q psy1452 212 VPQCPHCHG--DLKPD 225 (268)
Q Consensus 212 iP~Cp~Cgg--~lrP~ 225 (268)
...||+||+ .|.++
T Consensus 19 ~k~CP~CG~~~fm~~~ 34 (50)
T 3j20_Y 19 NKFCPRCGPGVFMADH 34 (50)
T ss_dssp SEECSSSCSSCEEEEC
T ss_pred cccCCCCCCceEEecC
Confidence 567999998 55543
No 78
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=26.14 E-value=30 Score=33.00 Aligned_cols=37 Identities=14% Similarity=0.227 Sum_probs=29.8
Q ss_pred CHHHHHHHHHHHHhCCcEEEEeCcccccc-----------cCCCCccC
Q psy1452 35 EESDINKLKQFIEKYNKILVVTGAGISTE-----------SGIPDYRS 71 (268)
Q Consensus 35 ~~~~l~~l~~~l~~a~~ivi~tGAGiS~~-----------sGiP~fr~ 71 (268)
....++++++.|++|++.||++|.|.... .|+|.+..
T Consensus 229 ~~~~i~~~~~~l~~A~rPvIl~G~g~~~~a~~~l~~lae~~~~PV~~t 276 (604)
T 2x7j_A 229 DRESLSDVAEMLAEAEKGMIVCGELHSDADKENIIALSKALQYPILAD 276 (604)
T ss_dssp CTGGGHHHHHHHHHCSSEEEEECCCCCHHHHHHHHHHHHHHTCCEEEC
T ss_pred ChhhHHHHHHHHhhcCCeEEEECCCCcHHHHHHHHHHHHhcCceEEEc
Confidence 34679999999999999999999997432 37887654
No 79
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=25.98 E-value=38 Score=25.44 Aligned_cols=52 Identities=15% Similarity=0.133 Sum_probs=34.2
Q ss_pred CCCCCHHHHHHHHhHhcCCCcEEEeccCcchhhhhcCCceEEec--ccccceeeCCCCcccch
Q psy1452 113 SFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMH--GTAFRVMCLGCDYEIDR 173 (268)
Q Consensus 113 ~~~P~~~H~~L~~L~~~~~~~~iiTqNiD~L~~~aG~~~v~elH--G~~~~~~C~~C~~~~~~ 173 (268)
...+.-.|+.|..|.+.|.+..+-..| ....|++. ..-.++.|..|++..+.
T Consensus 50 ~is~aTVYR~L~~L~e~Glv~~~~~~~---------~~~~Y~~~~~~~H~HliC~~Cg~v~~~ 103 (136)
T 1mzb_A 50 DVGLATVYRVLTQFEAAGLVVRHNFDG---------GHAVFELADSGHHDHMVCVDTGEVIEF 103 (136)
T ss_dssp CCCHHHHHHHHHHHHHHTSEEEECSSS---------SSCEEEESSSCCCEEEEETTTCCEEEE
T ss_pred CCCHHHHHHHHHHHHHCCcEEEEEeCC---------CceEEEeCCCCcceEEEECCCCCEEEe
Confidence 445667899999999988776553322 12334431 22357899999987654
No 80
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=25.89 E-value=54 Score=31.84 Aligned_cols=26 Identities=35% Similarity=0.424 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCcccc
Q psy1452 36 ESDINKLKQFIEKYNKILVVTGAGIS 61 (268)
Q Consensus 36 ~~~l~~l~~~l~~a~~ivi~tGAGiS 61 (268)
...+++++++|++|++.+|++|.|+.
T Consensus 276 ~~~i~~a~~~L~~AkrPvIl~G~g~~ 301 (677)
T 1t9b_A 276 MQSINKAADLINLAKKPVLYVGAGIL 301 (677)
T ss_dssp HHHHHHHHHHHHTCSSEEEEECGGGG
T ss_pred HHHHHHHHHHHHhCCCeEEEECcccc
Confidence 46799999999999999999999984
No 81
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=25.84 E-value=42 Score=29.48 Aligned_cols=17 Identities=18% Similarity=0.204 Sum_probs=13.0
Q ss_pred cccccceeeCCCCcccc
Q psy1452 156 HGTAFRVMCLGCDYEID 172 (268)
Q Consensus 156 HG~~~~~~C~~C~~~~~ 172 (268)
.+...+++|+-|+.++.
T Consensus 203 ~~G~R~l~Cs~C~t~W~ 219 (309)
T 2fiy_A 203 ETGLRYLSCSLCACEWH 219 (309)
T ss_dssp -CCEEEEEETTTCCEEE
T ss_pred CCCcEEEEeCCCCCEEe
Confidence 35677899999998864
No 82
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=25.84 E-value=42 Score=21.34 Aligned_cols=13 Identities=31% Similarity=0.848 Sum_probs=9.5
Q ss_pred CCCCCCCCCe-ecc
Q psy1452 212 VPQCPHCHGD-LKP 224 (268)
Q Consensus 212 iP~Cp~Cgg~-lrP 224 (268)
+-.|.+||.. |||
T Consensus 28 aw~CrKCG~~~lr~ 41 (51)
T 3j21_g 28 AKKCRKCGYKRLRP 41 (51)
T ss_dssp CSSCSSSSSCCCEE
T ss_pred ceecCCCCCccccc
Confidence 6689999864 665
No 83
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=25.66 E-value=34 Score=29.91 Aligned_cols=15 Identities=20% Similarity=0.401 Sum_probs=10.0
Q ss_pred ceeeCCCCcccchhh
Q psy1452 161 RVMCLGCDYEIDRHK 175 (268)
Q Consensus 161 ~~~C~~C~~~~~~~~ 175 (268)
+.+|.+|+...+..+
T Consensus 24 ~~kc~~~~~~~~~~~ 38 (304)
T 2f9y_B 24 WTKCDSCGQVLYRAE 38 (304)
T ss_dssp EECCTTTCCCEETTH
T ss_pred HHhhhhccchhhHHH
Confidence 457888888765443
No 84
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=24.98 E-value=48 Score=30.98 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=18.1
Q ss_pred HHHHHhhhCCEEEEEcccccccc
Q psy1452 240 KIDHLVRSCDGVLVLGSSLTVSF 262 (268)
Q Consensus 240 ~~~~~~~~~DlllviGTSl~V~p 262 (268)
.+.+.+.+||+||++|+.+....
T Consensus 269 ~~~~~l~~aD~vl~iG~~~~~~~ 291 (552)
T 1ovm_A 269 AVKEAIEGADTVLCVGTRFTDTL 291 (552)
T ss_dssp HHHHHHHTSSEEEEESCCCCTTT
T ss_pred HHHHHHHhCCEEEEECCCCCccc
Confidence 45567889999999999885443
No 85
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=24.82 E-value=54 Score=30.47 Aligned_cols=28 Identities=14% Similarity=0.358 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy1452 34 VEESDINKLKQFIEKYNKILVVTGAGIS 61 (268)
Q Consensus 34 ~~~~~l~~l~~~l~~a~~ivi~tGAGiS 61 (268)
.....++++++.|++|++.+|++|.|+.
T Consensus 185 ~~~~~i~~~~~~l~~a~rpvil~G~g~~ 212 (528)
T 1q6z_A 185 LNDQDLDILVKALNSASNPAIVLGPDVD 212 (528)
T ss_dssp CCHHHHHHHHHHHHHCSSCEEEECHHHH
T ss_pred CCHHHHHHHHHHHhcCCCeEEEECCccc
Confidence 4567899999999999999999999964
No 86
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=24.77 E-value=41 Score=31.60 Aligned_cols=20 Identities=40% Similarity=0.418 Sum_probs=17.1
Q ss_pred HHHHHhhhCCEEEEEccccc
Q psy1452 240 KIDHLVRSCDGVLVLGSSLT 259 (268)
Q Consensus 240 ~~~~~~~~~DlllviGTSl~ 259 (268)
.+.+.+.+||+||++|+.+.
T Consensus 271 ~~~~~~~~aDlvl~iG~~~~ 290 (556)
T 3hww_A 271 KATSELQQAQIVVQLGSSLT 290 (556)
T ss_dssp HHHHHHTTCSEEEEESBCCC
T ss_pred hhhhcccCCCEEEEcCCCcc
Confidence 45677889999999999985
No 87
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=24.17 E-value=19 Score=26.36 Aligned_cols=14 Identities=29% Similarity=0.601 Sum_probs=12.5
Q ss_pred CcEEEEeCcccccc
Q psy1452 50 NKILVVTGAGISTE 63 (268)
Q Consensus 50 ~~ivi~tGAGiS~~ 63 (268)
++|++.+|+|+|++
T Consensus 19 ~kIlvvC~sG~gTS 32 (110)
T 3czc_A 19 VKVLTACGNGMGSS 32 (110)
T ss_dssp EEEEEECCCCHHHH
T ss_pred cEEEEECCCcHHHH
Confidence 57999999999986
No 88
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=24.07 E-value=52 Score=30.87 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=16.9
Q ss_pred HHHHHhhhCCEEEEEcccccc
Q psy1452 240 KIDHLVRSCDGVLVLGSSLTV 260 (268)
Q Consensus 240 ~~~~~~~~~DlllviGTSl~V 260 (268)
.+.+.+.+||+||++|+.+.-
T Consensus 271 ~~~~~l~~aDlvl~iG~~~~~ 291 (563)
T 2vk8_A 271 EVKEAVESADLILSVGALLSD 291 (563)
T ss_dssp HHHHHHHTCSEEEEESCCCCT
T ss_pred HHHHHHHhCCEEEEECCCCcc
Confidence 345678899999999998843
No 89
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=23.85 E-value=30 Score=23.23 Aligned_cols=15 Identities=27% Similarity=0.572 Sum_probs=11.2
Q ss_pred ccccceeeCCCCccc
Q psy1452 157 GTAFRVMCLGCDYEI 171 (268)
Q Consensus 157 G~~~~~~C~~C~~~~ 171 (268)
+.+-..+|..|....
T Consensus 3 S~Fm~VKCp~C~niq 17 (66)
T 1qxf_A 3 SRFVKVKCPDCEHEQ 17 (66)
T ss_dssp CCEEEEECTTTCCEE
T ss_pred ceeEEEECCCCCCce
Confidence 445678899999865
No 90
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=23.70 E-value=57 Score=30.28 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=17.7
Q ss_pred HHHHHhhhCCEEEEEccccccc
Q psy1452 240 KIDHLVRSCDGVLVLGSSLTVS 261 (268)
Q Consensus 240 ~~~~~~~~~DlllviGTSl~V~ 261 (268)
.+.+.+++||+||++|+.+.-.
T Consensus 259 ~~~~~l~~aDlvl~iG~~~~~~ 280 (528)
T 1q6z_A 259 AISQLLEGHDVVLVIGAPVFRY 280 (528)
T ss_dssp HHHHHHTTCSEEEEESSCTTCC
T ss_pred HHHHHHhcCCEEEEECCCCccc
Confidence 4556788999999999987543
No 91
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=23.70 E-value=56 Score=24.80 Aligned_cols=51 Identities=8% Similarity=0.236 Sum_probs=33.6
Q ss_pred CCCCCHHHHHHHHhHhcCCCcEEEeccCcchhhhhcCCceEEecc-cccceeeCCCCcccc
Q psy1452 113 SFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHG-TAFRVMCLGCDYEID 172 (268)
Q Consensus 113 ~~~P~~~H~~L~~L~~~~~~~~iiTqNiD~L~~~aG~~~v~elHG-~~~~~~C~~C~~~~~ 172 (268)
...+.-.|+.|..|.+.|.+..+-..|-- ..|++.+ .-.++.|..|++..+
T Consensus 53 ~is~aTVYR~L~~L~e~Glv~~~~~~~~~---------~~Y~~~~~~H~HliC~~Cg~v~~ 104 (145)
T 2fe3_A 53 NMSVATVYNNLRVFRESGLVKELTYGDAS---------SRFDFVTSDHYHAICENCGKIVD 104 (145)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEECCTTSC---------CEEEECCCCEEEEEETTTCCEEE
T ss_pred CCChhhHHHHHHHHHHCCCEEEEeeCCCc---------eEEECCCCCcceEEECCCCCEEE
Confidence 44566789999999999887665443321 2232211 234699999998765
No 92
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=23.64 E-value=49 Score=31.21 Aligned_cols=28 Identities=11% Similarity=0.139 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy1452 34 VEESDINKLKQFIEKYNKILVVTGAGIS 61 (268)
Q Consensus 34 ~~~~~l~~l~~~l~~a~~ivi~tGAGiS 61 (268)
.....++++++.|++|++.+|++|.|..
T Consensus 201 ~~~~~v~~~~~~l~~a~rpvIl~G~g~~ 228 (573)
T 2iht_A 201 GWQKAADQAAALLAEAKHPVLVVGAAAI 228 (573)
T ss_dssp THHHHHHHHHHHHHHCSSEEEEECHHHH
T ss_pred CCHHHHHHHHHHHHcCCCeEEEECCCcc
Confidence 3457799999999999999999999974
No 93
>2bru_C NAD(P) transhydrogenase subunit beta; paramagnetic transhydrogenase, inner membrane, membrane, oxidoreductase, transmembrane; HET: NAD NAP; NMR {Escherichia coli}
Probab=23.14 E-value=35 Score=27.54 Aligned_cols=34 Identities=9% Similarity=0.286 Sum_probs=23.2
Q ss_pred CCCCCCHHHHHHHHHHHHhCCcEEEEeCcccccc
Q psy1452 30 KHKPVEESDINKLKQFIEKYNKILVVTGAGISTE 63 (268)
Q Consensus 30 ~~~~~~~~~l~~l~~~l~~a~~ivi~tGAGiS~~ 63 (268)
+..+..+.+.++++.+|.+|+++||.-|=|+-++
T Consensus 11 ~~g~~~~~~~~~~a~~l~~A~~ViIVPGYGmAVA 44 (186)
T 2bru_C 11 EVGEHREITAEETAELLKNSHSVIITPGYGMAVA 44 (186)
T ss_dssp ---------CHHHHHHHHHCSEEEEECSBHHHHT
T ss_pred cCCceeecCHHHHHHHHHhCCeEEEECChHHHHH
Confidence 3344556678999999999999999999998875
No 94
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=23.03 E-value=60 Score=30.55 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=0.0
Q ss_pred HHHHHHhhhCCEEEEEccccccccccccCC
Q psy1452 239 EKIDHLVRSCDGVLVLGSSLTVSFSKSMLS 268 (268)
Q Consensus 239 ~~~~~~~~~~DlllviGTSl~V~p~~~~~~ 268 (268)
..+.+.+++||+||++|+.+.......+..
T Consensus 281 ~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~ 310 (565)
T 2nxw_A 281 AEITRLVEESDGLFLLGAILSDTNFAVSQR 310 (565)
T ss_dssp HHHHHHHHTCSEEEEESCCBCSSTTSBCTT
T ss_pred HHHHHHHHhCCEEEEECCCccccccccccc
No 95
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=22.98 E-value=69 Score=30.30 Aligned_cols=27 Identities=15% Similarity=0.364 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEeCccc
Q psy1452 34 VEESDINKLKQFIEKYNKILVVTGAGI 60 (268)
Q Consensus 34 ~~~~~l~~l~~~l~~a~~ivi~tGAGi 60 (268)
.....++++++.|++|++.+|++|.|+
T Consensus 190 ~~~~~i~~~~~~l~~a~rpvil~G~g~ 216 (590)
T 1v5e_A 190 PAAQDIDAAVELLNNSKRPVIYAGIGT 216 (590)
T ss_dssp CCHHHHHHHHHHHHHCSSEEEEECGGG
T ss_pred CCHHHHHHHHHHHHhCCCeEEEEcCch
Confidence 345789999999999999999999998
No 96
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*
Probab=22.89 E-value=61 Score=28.76 Aligned_cols=21 Identities=38% Similarity=0.556 Sum_probs=16.8
Q ss_pred HHHHHHHHhhhCCEEEEEccc
Q psy1452 237 RMEKIDHLVRSCDGVLVLGSS 257 (268)
Q Consensus 237 ~~~~~~~~~~~~DlllviGTS 257 (268)
+-+++.+.+.++|++||||..
T Consensus 215 RQ~av~~lA~~vD~miVVGg~ 235 (328)
T 3szu_A 215 RQEAVRALAEQAEVVLVVGSK 235 (328)
T ss_dssp HHHHHHHHHHHCSEEEEECCT
T ss_pred HHHHHHHHHHhCCEEEEeCCC
Confidence 455567777899999999985
No 97
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=22.84 E-value=54 Score=26.11 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHHhCCcEEEEeCcccccc
Q psy1452 35 EESDINKLKQFIEKYNKILVVTGAGISTE 63 (268)
Q Consensus 35 ~~~~l~~l~~~l~~a~~ivi~tGAGiS~~ 63 (268)
....++++++.|.++++| ++.|.|-|..
T Consensus 33 ~~~~l~~~~~~i~~a~~I-~i~G~G~S~~ 60 (200)
T 1vim_A 33 DLETVGEMIKLIDSARSI-FVIGAGRSGY 60 (200)
T ss_dssp CHHHHHHHHHHHHHSSCE-EEECSHHHHH
T ss_pred CHHHHHHHHHHHhcCCEE-EEEEecHHHH
Confidence 467899999999999864 5678887754
No 98
>3brc_A Conserved protein of unknown function; methanobacterium thermoautotrophicum, STR genomics, MCSG, PSI-2; 1.60A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=22.80 E-value=56 Score=25.48 Aligned_cols=25 Identities=8% Similarity=0.280 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCccc
Q psy1452 36 ESDINKLKQFIEKYNKILVVTGAGI 60 (268)
Q Consensus 36 ~~~l~~l~~~l~~a~~ivi~tGAGi 60 (268)
...++.+++.|.+|++|||.|..+-
T Consensus 23 ~EEv~~Ir~~I~nakkIvV~t~N~k 47 (156)
T 3brc_A 23 SEEVEAIRKYIRSARRTVVPNWNAE 47 (156)
T ss_dssp HHHHHHHHHHHHHCSCEEECCCCHH
T ss_pred HHHHHHHHHHHhcCCeEEEecCCch
Confidence 3568899999999999999887763
No 99
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=22.67 E-value=58 Score=24.94 Aligned_cols=52 Identities=19% Similarity=0.242 Sum_probs=34.5
Q ss_pred CCCCCHHHHHHHHhHhcCCCcEEEeccCcchhhhhcCCceEEe--cccccceeeCCCCcccch
Q psy1452 113 SFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEM--HGTAFRVMCLGCDYEIDR 173 (268)
Q Consensus 113 ~~~P~~~H~~L~~L~~~~~~~~iiTqNiD~L~~~aG~~~v~el--HG~~~~~~C~~C~~~~~~ 173 (268)
...+.-.|+.|..|++.|.+..+-..+- ...|++ +..-.+++|..|++..+.
T Consensus 49 ~is~aTVYR~L~~L~e~Glv~~~~~~~~---------~~~Y~~~~~~~H~HliC~~Cg~v~~~ 102 (150)
T 2w57_A 49 EIGLATVYRVLNQFDDAGIVTRHHFEGG---------KSVFELSTQHHHDHLVCLDCGEVIEF 102 (150)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEEECGGG---------CEEEEECCSSCCEEEEETTTCCEEEE
T ss_pred CCCHHHHHHHHHHHHHCCcEEEEEeCCC---------ceEEEecCCCceeEEEECCCCCEEEe
Confidence 4456678999999999998776543221 223443 123357899999987654
No 100
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=22.55 E-value=62 Score=30.39 Aligned_cols=26 Identities=12% Similarity=0.305 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCcccc
Q psy1452 36 ESDINKLKQFIEKYNKILVVTGAGIS 61 (268)
Q Consensus 36 ~~~l~~l~~~l~~a~~ivi~tGAGiS 61 (268)
...++++++.|++|++.+|++|.|..
T Consensus 196 ~~~i~~~~~~l~~a~rpvi~~G~g~~ 221 (566)
T 2vbi_A 196 KAAVDATVALLEKSASPVMLLGSKLR 221 (566)
T ss_dssp HHHHHHHHHHHHTCSCEEEEECTTTT
T ss_pred HHHHHHHHHHHHhCCCCEEEECcCcc
Confidence 36799999999999999999999975
No 101
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=22.45 E-value=50 Score=30.93 Aligned_cols=20 Identities=20% Similarity=0.323 Sum_probs=16.5
Q ss_pred HHHHhhhCCEEEEEcccccc
Q psy1452 241 IDHLVRSCDGVLVLGSSLTV 260 (268)
Q Consensus 241 ~~~~~~~~DlllviGTSl~V 260 (268)
+.+.+.+||+||++|+++..
T Consensus 259 ~~~~~~~aDlvl~iG~~~~~ 278 (549)
T 3eya_A 259 GFHTMMNADTLVLLGTQFPY 278 (549)
T ss_dssp HHHHHHHCSEEEEESCCCCC
T ss_pred HHHHHHhCCEEEEECCCCCc
Confidence 45678899999999998753
No 102
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=22.45 E-value=55 Score=30.57 Aligned_cols=26 Identities=0% Similarity=-0.069 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCcccc
Q psy1452 36 ESDINKLKQFIEKYNKILVVTGAGIS 61 (268)
Q Consensus 36 ~~~l~~l~~~l~~a~~ivi~tGAGiS 61 (268)
...++++++.|++|++.+|++|.|+.
T Consensus 196 ~~~i~~~~~~l~~a~rpvil~G~g~~ 221 (552)
T 1ovm_A 196 KAFRDAAENKLAMSKRTALLADFLVL 221 (552)
T ss_dssp HHHHHHHHHHHHTCSCEEEEECHHHH
T ss_pred HHHHHHHHHHHHhCCCCEEEECcCcc
Confidence 46799999999999999999999985
No 103
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=22.28 E-value=33 Score=26.30 Aligned_cols=11 Identities=36% Similarity=1.361 Sum_probs=8.9
Q ss_pred CCCCCCCCCCe
Q psy1452 211 HVPQCPHCHGD 221 (268)
Q Consensus 211 ~iP~Cp~Cgg~ 221 (268)
.+|.||+|+..
T Consensus 26 ~lP~CP~C~se 36 (138)
T 2akl_A 26 TLPPCPQCNSE 36 (138)
T ss_dssp CSCCCTTTCCC
T ss_pred cCCCCCCCCCc
Confidence 48999999854
No 104
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=21.95 E-value=52 Score=31.32 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=16.7
Q ss_pred HHHHhhhCCEEEEEcccccc
Q psy1452 241 IDHLVRSCDGVLVLGSSLTV 260 (268)
Q Consensus 241 ~~~~~~~~DlllviGTSl~V 260 (268)
+.+.+.+||+||++|+.+..
T Consensus 270 ~~~~l~~aDlvl~iG~~~~~ 289 (603)
T 4feg_A 270 ANEALAQADVVLFVGNNYPF 289 (603)
T ss_dssp HHHHHHHCSEEEEESCCCTT
T ss_pred HHHHHHhCCEEEEECCCCCc
Confidence 45678899999999998863
No 105
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=21.85 E-value=44 Score=22.00 Aligned_cols=10 Identities=30% Similarity=0.836 Sum_probs=7.4
Q ss_pred CCCCCCCCee
Q psy1452 213 PQCPHCHGDL 222 (268)
Q Consensus 213 P~Cp~Cgg~l 222 (268)
..||.||+..
T Consensus 18 ~~CP~CG~~t 27 (60)
T 2aus_D 18 ETCPVCGEKT 27 (60)
T ss_dssp SBCTTTCSBC
T ss_pred ccCcCCCCcc
Confidence 4689999764
No 106
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=21.80 E-value=60 Score=30.50 Aligned_cols=26 Identities=19% Similarity=0.471 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCcccc
Q psy1452 36 ESDINKLKQFIEKYNKILVVTGAGIS 61 (268)
Q Consensus 36 ~~~l~~l~~~l~~a~~ivi~tGAGiS 61 (268)
...++++++.|.+|++.+|++|.|..
T Consensus 196 ~~~i~~~~~~l~~a~rpvil~G~g~~ 221 (568)
T 2wvg_A 196 NAAVEETLKFIANRDKVAVLVGSKLR 221 (568)
T ss_dssp HHHHHHHHHHHTTCCCEEEEECTTTT
T ss_pred HHHHHHHHHHHHhCCCCEEEECcccc
Confidence 46799999999999999999999975
No 107
>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}
Probab=21.74 E-value=55 Score=27.38 Aligned_cols=29 Identities=28% Similarity=0.547 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHHHhC-CcEEEEeCcccccc
Q psy1452 35 EESDINKLKQFIEKY-NKILVVTGAGISTE 63 (268)
Q Consensus 35 ~~~~l~~l~~~l~~a-~~ivi~tGAGiS~~ 63 (268)
....++.|+++++.+ ++|.|+.|+|+..+
T Consensus 161 a~~g~~~L~~Lv~~a~~ri~Im~GgGV~~~ 190 (224)
T 2bdq_A 161 IIENIKHIKALVEYANNRIEIMVGGGVTAE 190 (224)
T ss_dssp GGGGHHHHHHHHHHHTTSSEEEECSSCCTT
T ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCHH
Confidence 566788888888765 47999999999864
No 108
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=21.72 E-value=37 Score=20.93 Aligned_cols=9 Identities=33% Similarity=0.999 Sum_probs=7.4
Q ss_pred CCCCCCCCC
Q psy1452 212 VPQCPHCHG 220 (268)
Q Consensus 212 iP~Cp~Cgg 220 (268)
+..||.||+
T Consensus 5 ~~~CP~C~~ 13 (50)
T 1pft_A 5 QKVCPACES 13 (50)
T ss_dssp CCSCTTTSC
T ss_pred cEeCcCCCC
Confidence 457999988
No 109
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=21.50 E-value=62 Score=25.38 Aligned_cols=27 Identities=33% Similarity=0.324 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhCCcEEEEeCccccccc
Q psy1452 37 SDINKLKQFIEKYNKILVVTGAGISTES 64 (268)
Q Consensus 37 ~~l~~l~~~l~~a~~ivi~tGAGiS~~s 64 (268)
+.++.+++.|.++++|+ +.|.|-|...
T Consensus 29 ~~~~~~~~~i~~a~~I~-i~G~G~S~~~ 55 (196)
T 2yva_A 29 RAAMTLVQSLLNGNKIL-CCGNGTSAAN 55 (196)
T ss_dssp HHHHHHHHHHHTTCCEE-EEESTHHHHH
T ss_pred HHHHHHHHHHHcCCEEE-EEeCchhhHH
Confidence 77899999999887655 5688877543
No 110
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=21.49 E-value=32 Score=19.10 Aligned_cols=14 Identities=29% Similarity=0.738 Sum_probs=10.5
Q ss_pred CCCCCCCCCeeccc
Q psy1452 212 VPQCPHCHGDLKPD 225 (268)
Q Consensus 212 iP~Cp~Cgg~lrP~ 225 (268)
.++|+.|+..+-|.
T Consensus 3 ~~~C~~C~k~Vy~~ 16 (31)
T 1zfo_A 3 NPNCARCGKIVYPT 16 (31)
T ss_dssp CCBCSSSCSBCCGG
T ss_pred CCcCCccCCEEecc
Confidence 36899999876554
No 111
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=21.48 E-value=56 Score=30.61 Aligned_cols=26 Identities=12% Similarity=0.125 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCcccc
Q psy1452 36 ESDINKLKQFIEKYNKILVVTGAGIS 61 (268)
Q Consensus 36 ~~~l~~l~~~l~~a~~ivi~tGAGiS 61 (268)
...++++++.|++|++.+|++|.|+.
T Consensus 198 ~~~i~~~~~~l~~a~rpvIl~G~g~~ 223 (563)
T 2vk8_A 198 KEVIDTILVLDKDAKNPVILADACCS 223 (563)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECHHHH
T ss_pred HHHHHHHHHHHHhCCCCEEEECcCcc
Confidence 35789999999999999999999974
No 112
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=21.42 E-value=83 Score=22.38 Aligned_cols=13 Identities=23% Similarity=0.317 Sum_probs=10.5
Q ss_pred CCCCCCCCCeecc
Q psy1452 212 VPQCPHCHGDLKP 224 (268)
Q Consensus 212 iP~Cp~Cgg~lrP 224 (268)
.+.||.|+..+..
T Consensus 63 ~~~cP~~~~~l~~ 75 (100)
T 2kre_A 63 SPTDPFNRQTLTE 75 (100)
T ss_dssp CSBCSSSCCBCCT
T ss_pred CCCCCCCCCCCCh
Confidence 4689999988765
No 113
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=21.29 E-value=68 Score=30.11 Aligned_cols=22 Identities=41% Similarity=0.558 Sum_probs=17.2
Q ss_pred HHHHHhhhCCEEEEEccccccc
Q psy1452 240 KIDHLVRSCDGVLVLGSSLTVS 261 (268)
Q Consensus 240 ~~~~~~~~~DlllviGTSl~V~ 261 (268)
.+.+.+.++|+||++|+.+.-.
T Consensus 288 ~~~~~l~~aDlvl~iG~~~~~~ 309 (570)
T 2vbf_A 288 SLKNFVESADFILMLGVKLTDS 309 (570)
T ss_dssp HHHHHHHHCSEEEEESCCCCGG
T ss_pred HHHHHHHhCCEEEEECCCcccc
Confidence 3456788999999999987443
No 114
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=21.07 E-value=56 Score=25.24 Aligned_cols=29 Identities=28% Similarity=0.274 Sum_probs=22.7
Q ss_pred CHHHHHHHHHHHHhCCcEEEEeCccccccc
Q psy1452 35 EESDINKLKQFIEKYNKILVVTGAGISTES 64 (268)
Q Consensus 35 ~~~~l~~l~~~l~~a~~ivi~tGAGiS~~s 64 (268)
....++++++.|.++++|+ +.|.|-|...
T Consensus 26 ~~~~i~~~~~~i~~a~~I~-i~G~G~S~~~ 54 (180)
T 1jeo_A 26 WKNKLDSLIDRIIKAKKIF-IFGVGRSGYI 54 (180)
T ss_dssp HHHHHHHHHHHHHHCSSEE-EECCHHHHHH
T ss_pred CHHHHHHHHHHHHhCCEEE-EEeecHHHHH
Confidence 4578999999999998654 5788887654
No 115
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=20.85 E-value=42 Score=26.23 Aligned_cols=52 Identities=17% Similarity=0.200 Sum_probs=32.3
Q ss_pred CCCCCHHHHHHHHhHhcCCCcEEEeccCcchhhhhcCCceEEec--ccccceeeCCCCcccch
Q psy1452 113 SFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMH--GTAFRVMCLGCDYEIDR 173 (268)
Q Consensus 113 ~~~P~~~H~~L~~L~~~~~~~~iiTqNiD~L~~~aG~~~v~elH--G~~~~~~C~~C~~~~~~ 173 (268)
...+.-.|+.|..|.+.|.+..+-..+ | ...|++- ..-.++.|..|++..+.
T Consensus 66 ~is~aTVYRtL~~L~e~Glv~~i~~~~--------~-~~~Y~~~~~~~H~HliC~~CG~v~e~ 119 (162)
T 4ets_A 66 NVGIATVYRTLNLLEEAEMVTSISFGS--------A-GKKYELANKPHHDHMICKNCGKIIEF 119 (162)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEECC--------------CCEEECCCCCCEEEEETTTCCEEEE
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEeCC--------C-ceEEEeCCCCCccEEEECCCCCEEEe
Confidence 445667899999999988776543221 1 1123332 23456999999987653
No 116
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=20.62 E-value=85 Score=29.79 Aligned_cols=27 Identities=19% Similarity=0.407 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHHHhCCcEEEEeCcccc
Q psy1452 35 EESDINKLKQFIEKYNKILVVTGAGIS 61 (268)
Q Consensus 35 ~~~~l~~l~~~l~~a~~ivi~tGAGiS 61 (268)
....+++++++|.+|++.+|++|.|+.
T Consensus 212 ~~~~i~~~~~~l~~a~rpvil~G~g~~ 238 (616)
T 2pan_A 212 SRMQIEKAVEMLIQAERPVIVAGGGVI 238 (616)
T ss_dssp CHHHHHHHHHHHHTCSSEEEEECHHHH
T ss_pred CHHHHHHHHHHHHcCCCeEEEECCCcC
Confidence 367899999999999999999999974
No 117
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=20.46 E-value=1.2e+02 Score=21.39 Aligned_cols=13 Identities=15% Similarity=0.038 Sum_probs=10.4
Q ss_pred CCCCCCCCCeecc
Q psy1452 212 VPQCPHCHGDLKP 224 (268)
Q Consensus 212 iP~Cp~Cgg~lrP 224 (268)
.+.||.|+..+..
T Consensus 57 ~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 57 DQTDPFNRSPLTM 69 (98)
T ss_dssp SCBCTTTCSBCCT
T ss_pred CCCCCCCCCCCCh
Confidence 4689999988775
No 118
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=20.45 E-value=1e+02 Score=20.95 Aligned_cols=14 Identities=21% Similarity=0.235 Sum_probs=10.5
Q ss_pred CCCCCCCCCeeccc
Q psy1452 212 VPQCPHCHGDLKPD 225 (268)
Q Consensus 212 iP~Cp~Cgg~lrP~ 225 (268)
.+.||.|+..+...
T Consensus 48 ~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 48 SPTDPFNRQMLTES 61 (85)
T ss_dssp CSBCTTTCCBCCGG
T ss_pred CCCCCCCcCCCChH
Confidence 36899999887653
No 119
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=20.42 E-value=61 Score=30.45 Aligned_cols=21 Identities=19% Similarity=0.401 Sum_probs=16.6
Q ss_pred HHHHhhhCCEEEEEccccccc
Q psy1452 241 IDHLVRSCDGVLVLGSSLTVS 261 (268)
Q Consensus 241 ~~~~~~~~DlllviGTSl~V~ 261 (268)
+.+.+.++|+||++|+.+.-.
T Consensus 270 ~~~~l~~aDlvl~iG~~~~~~ 290 (566)
T 2vbi_A 270 VQELVETSDALLCIAPVFNDY 290 (566)
T ss_dssp HHHHHHTCSEEEEESCCCBTT
T ss_pred HHHHHHhCCEEEEECCCcccc
Confidence 345688999999999987543
No 120
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=20.24 E-value=31 Score=25.09 Aligned_cols=13 Identities=31% Similarity=0.782 Sum_probs=10.6
Q ss_pred CCCCCCCCCeecc
Q psy1452 212 VPQCPHCHGDLKP 224 (268)
Q Consensus 212 iP~Cp~Cgg~lrP 224 (268)
...||-||..+.|
T Consensus 47 g~~CPvCgs~l~~ 59 (112)
T 1l8d_A 47 KGKCPVCGRELTD 59 (112)
T ss_dssp SEECTTTCCEECH
T ss_pred CCCCCCCCCcCCH
Confidence 3469999999886
Done!