RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1452
(268 letters)
>gnl|CDD|238700 cd01409, SIRT4, SIRT4: Eukaryotic and prokaryotic group (class2)
which includes human sirtuin SIRT4 and several bacterial
homologs; and are members of the SIR2 family of
proteins, silent information regulator 2 (Sir2) enzymes
which catalyze NAD+-dependent protein/histone
deacetylation. Sir2 proteins have been shown to regulate
gene silencing, DNA repair, metabolic enzymes, and life
span.
Length = 260
Score = 318 bits (818), Expect = e-110
Identities = 115/219 (52%), Positives = 154/219 (70%), Gaps = 2/219 (0%)
Query: 42 LKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRVRIRYW 101
L+ F+ + ++LV+TGAGISTESGIPDYRSEG GLY+R+ RP+ Q+F++S R RYW
Sbjct: 1 LQDFVARSRRLLVLTGAGISTESGIPDYRSEG-GLYSRT-FRPMTHQEFMRSPAARQRYW 58
Query: 102 ARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFR 161
AR+FVGWPRFS+ QPNA H AL +E +L +ITQNVDGLH KAG++ V+E+HG+ R
Sbjct: 59 ARSFVGWPRFSAAQPNAAHRALAALEAAGRLHGLITQNVDGLHTKAGSRNVVELHGSLHR 118
Query: 162 VMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGD 221
V+CL C + R + Q LE LNP ++ PDGDV++ +E ++ F VP+C C G
Sbjct: 119 VVCLSCGFRTPRAELQDRLEALNPGFAEQAAGQAPDGDVDLEDEQVAGFRVPECERCGGV 178
Query: 222 LKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTV 260
LKPD+VFFG+N+PR R+ + D +LVLGSSL V
Sbjct: 179 LKPDVVFFGENVPRDRVVTAAARLAEADALLVLGSSLMV 217
>gnl|CDD|235415 PRK05333, PRK05333, NAD-dependent deacetylase; Provisional.
Length = 285
Score = 264 bits (677), Expect = 1e-88
Identities = 101/225 (44%), Positives = 142/225 (63%), Gaps = 5/225 (2%)
Query: 37 SDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRV 96
+ ++ L+ F+E++ ++ V+TGAGIST+SGIPDYR + G + RS P+ +Q F+ S
Sbjct: 7 AALDALQDFVERHPRLFVLTGAGISTDSGIPDYR-DRNGQWKRS--PPITYQAFMGSDAA 63
Query: 97 RIRYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMH 156
R RYWAR+ VGWP F QPNA H+AL ++ ++ ++TQNVDGLH +AG++ VIE+H
Sbjct: 64 RRRYWARSMVGWPVFGRAQPNAAHHALARLGAAGRIERLVTQNVDGLHQRAGSRDVIELH 123
Query: 157 GTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCP 216
G V C+GC R + Q +LE NP+ + PDGD ++ F VP CP
Sbjct: 124 GRLDGVRCMGCGARHPRAEIQHVLEAANPEWLALEAAPAPDGDADLEWAAFDHFRVPACP 183
Query: 217 HCHGDLKPDIVFFGDNIPRHRMEKI-DHLVRSCDGVLVLGSSLTV 260
C G LKPD+VFFG+N+PR R+ L + D VLV+GSSL V
Sbjct: 184 ACGGILKPDVVFFGENVPRERVAAARAALDAA-DAVLVVGSSLMV 227
>gnl|CDD|238698 cd01407, SIR2-fam, SIR2 family of proteins includes silent
information regulator 2 (Sir2) enzymes which catalyze
NAD+-dependent protein/histone deacetylation, where the
acetyl group from the lysine epsilon-amino group is
transferred to the ADP-ribose moiety of NAD+, producing
nicotinamide and the novel metabolite
O-acetyl-ADP-ribose. Sir2 proteins, also known as
sirtuins, are found in all eukaryotes and many archaea
and prokaryotes and have been shown to regulate gene
silencing, DNA repair, metabolic enzymes, and life span.
The most-studied function, gene silencing, involves the
inactivation of chromosome domains containing key
regulatory genes by packaging them into a specialized
chromatin structure that is inaccessible to DNA-binding
proteins. The oligomerization state of Sir2 appears to
be organism-dependent, sometimes occurring as a monomer
and sometimes as a multimer.
Length = 218
Score = 225 bits (576), Expect = 2e-74
Identities = 86/215 (40%), Positives = 114/215 (53%), Gaps = 39/215 (18%)
Query: 50 NKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRVRIRYWARNFVGWP 109
+I+V+TGAGISTESGIPD+RS G GL+AR D + F R F G+
Sbjct: 1 KRIVVLTGAGISTESGIPDFRSPG-GLWARLDPEELAFS------PEAFRRDPELFWGFY 53
Query: 110 RFS----SFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCL 165
R + QPN H AL ++E KL +ITQNVDGLH +AG+ KVIE+HG+ FRV C
Sbjct: 54 RERRYPLNAQPNPAHRALAELERKGKLKRVITQNVDGLHQRAGSPKVIELHGSLFRVRCT 113
Query: 166 GCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDLKPD 225
C E R + Q I + VP+CP C G L+PD
Sbjct: 114 KCGKEYPRDELQ---------------------------ADIDREEVPRCPKCGGLLRPD 146
Query: 226 IVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTV 260
+VFFG+++P E + L + D +LV+G+SL V
Sbjct: 147 VVFFGESLPEELDEAAEALAK-ADLLLVIGTSLQV 180
>gnl|CDD|234777 PRK00481, PRK00481, NAD-dependent deacetylase; Provisional.
Length = 242
Score = 196 bits (502), Expect = 9e-63
Identities = 75/235 (31%), Positives = 109/235 (46%), Gaps = 56/235 (23%)
Query: 38 DINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSD-----------KRPVQ 86
I +L + ++K +I+V+TGAGIS ESGIPD+RS GL+ + P
Sbjct: 2 RIEELAEILDKAKRIVVLTGAGISAESGIPDFRSAN-GLWEEHRPEDVASPEGFARDPEL 60
Query: 87 FQDFLKSRRVRIRYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYK 146
F RR ++ +PNA H AL ++E KL +ITQN+DGLH +
Sbjct: 61 VWKFYNERRRQLL-------------DAKPNAAHRALAELEKLGKLVTVITQNIDGLHER 107
Query: 147 AGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEET 206
AG+K VIE+HG+ R C C D E L P+
Sbjct: 108 AGSKNVIELHGSLLRARCTKCGQTYDLD------EYLKPEP------------------- 142
Query: 207 ISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVS 261
P+CP C G L+PD+V FG+ +P +++ + D +V+G+SL V
Sbjct: 143 ------PRCPKCGGILRPDVVLFGEMLPELAIDEAYEALEEADLFIVIGTSLVVY 191
>gnl|CDD|238184 cd00296, SIR2, SIR2 superfamily of proteins includes silent
information regulator 2 (Sir2) enzymes which catalyze
NAD+-dependent protein/histone deacetylation, where the
acetyl group from the lysine epsilon-amino group is
transferred to the ADP-ribose moiety of NAD+, producing
nicotinamide and the novel metabolite
O-acetyl-ADP-ribose. Sir2 proteins, also known as
sirtuins, are found in all eukaryotes and many archaea
and prokaryotes and have been shown to regulate gene
silencing, DNA repair, metabolic enzymes, and life span.
The most-studied function, gene silencing, involves the
inactivation of chromosome domains containing key
regulatory genes by packaging them into a specialized
chromatin structure that is inaccessible to DNA-binding
proteins. The oligomerization state of Sir2 appears to
be organism-dependent, sometimes occurring as a monomer
and sometimes as a multimer. Also included in this
superfamily is a group of uncharacterized Sir2-like
proteins which lack certain key catalytic residues and
conserved zinc binding cysteines.
Length = 222
Score = 192 bits (491), Expect = 2e-61
Identities = 75/218 (34%), Positives = 106/218 (48%), Gaps = 43/218 (19%)
Query: 50 NKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRVRIRYWARNFVGWP 109
+++V TGAGISTESGIPD+R G GL+ R D + F R F +
Sbjct: 1 KRVVVFTGAGISTESGIPDFRGLGTGLWTRLDPEELAFS------PEAFRRDPELFWLFY 54
Query: 110 RFS-----SFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNK--KVIEMHGTAFRV 162
+ +PN H AL ++E KL IITQNVDGLH +AG++ +VIE+HG+ RV
Sbjct: 55 KERRYTPLDAKPNPAHRALAELERKGKLKRIITQNVDGLHERAGSRRNRVIELHGSLDRV 114
Query: 163 MCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDL 222
C C E R + + + P+CP C G L
Sbjct: 115 RCTSCGKEYPRDEVLE------------------------------REKPPRCPKCGGLL 144
Query: 223 KPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTV 260
+PD+V FG+ +P+ ++ + D VLV+G+SLTV
Sbjct: 145 RPDVVDFGEALPKEWFDRALEALLEADLVLVIGTSLTV 182
>gnl|CDD|216902 pfam02146, SIR2, Sir2 family. This region is characteristic of
Silent information regulator 2 (Sir2) proteins, or
sirtuins. These are protein deacetylases that depend on
nicotine adenine dinucleotide (NAD). They are found in
many subcellular locations, including the nucleus,
cytoplasm and mitochondria. Eukaryotic forms play in
important role in the regulation of transcriptional
repression. Moreover, they are involved in microtubule
organisation and DNA damage repair processes.
Length = 177
Score = 187 bits (478), Expect = 4e-60
Identities = 74/208 (35%), Positives = 104/208 (50%), Gaps = 37/208 (17%)
Query: 57 GAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRVRIRY----WARNFVGWPRFS 112
GAGISTESGIPD+RS+ GLYA+ K + + S + AR + P
Sbjct: 1 GAGISTESGIPDFRSDD-GLYAKLAKEELASPEAFFSNPYLVWDPFYNIARELLPGP--- 56
Query: 113 SFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEID 172
QPN HY + ++ED KL +ITQN+DGLH +AG+KKV+E+HG+ + C+ C +
Sbjct: 57 -AQPNPAHYFIAELEDKGKLLRLITQNIDGLHERAGSKKVVELHGSFAKARCVSCHKKYT 115
Query: 173 RHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDN 232
+ + D VP+C C G LKPDIVFFG+N
Sbjct: 116 G------------------ETLPERIDAAK---------VPKCDKCGGLLKPDIVFFGEN 148
Query: 233 IPRHRMEKIDHLVRSCDGVLVLGSSLTV 260
+P + V D ++V+G+SL V
Sbjct: 149 LPDK-FFRAYEDVEEADLLIVIGTSLKV 175
>gnl|CDD|223915 COG0846, SIR2, NAD-dependent protein deacetylases, SIR2 family
[Transcription].
Length = 250
Score = 163 bits (414), Expect = 2e-49
Identities = 77/238 (32%), Positives = 117/238 (49%), Gaps = 58/238 (24%)
Query: 38 DINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYA--------------RSDKR 83
+ ++ Q +++ +I+V+TGAGIS ESGIPD+RS+ GL++ R D
Sbjct: 1 PLEEVAQALKEAKRIVVLTGAGISAESGIPDFRSKD-GLWSDKYDPEDLASPSGFRRD-- 57
Query: 84 PVQFQDFLKSRRVRIRYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGL 143
P DF R QPN HYAL ++ED KL IITQN+DGL
Sbjct: 58 PELVWDFYSERL-------------RLLYLAQPNKAHYALAELEDKGKLLRIITQNIDGL 104
Query: 144 HYKAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMS 203
H +AG+K VIE+HG+ RV C C + + +I+ E
Sbjct: 105 HERAGSKNVIELHGSLKRVRCSKCGNQYYD------------EDVIKFIE---------- 142
Query: 204 EETISKFHVPQCPHCHGD-LKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTV 260
+P+CP C G L+PD+V+FG+ +P +++ ++ D ++V+G+SL V
Sbjct: 143 -----DGLIPRCPKCGGPVLRPDVVWFGEPLPASFLDEALEALKEADLLIVIGTSLKV 195
>gnl|CDD|238704 cd01413, SIR2_Af2, SIR2_Af2: Archaeal and prokaryotic group which
includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus
solfataricus ssSir2, and several bacterial homologs; and
are members of the SIR2 family of proteins, silent
information regulator 2 (Sir2) enzymes which catalyze
NAD+-dependent protein/histone deacetylation. Sir2
proteins have been shown to regulate gene silencing, DNA
repair, metabolic enzymes, and life span. The Sir2
homolog from the archaea Sulfolobus solftaricus
deacetylates the non-specific DNA protein Alba to
mediate transcription repression.
Length = 222
Score = 152 bits (386), Expect = 1e-45
Identities = 76/217 (35%), Positives = 110/217 (50%), Gaps = 33/217 (15%)
Query: 46 IEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFL-KSRRVRIRYWARN 104
+ K K +V+TGAGISTESGIPD+RS GL+ + D V D+ ++ R++
Sbjct: 1 LTKSRKTVVLTGAGISTESGIPDFRSPD-GLWKKYDPEEVASIDYFYRNPEEFWRFYKEI 59
Query: 105 FVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMC 164
+G QPN HY L ++E + IITQN+DGLH +AG+K VIE+HGT C
Sbjct: 60 ILG---LLEAQPNKAHYFLAELEKQGIIKAIITQNIDGLHQRAGSKNVIELHGTLQTAYC 116
Query: 165 LGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDLKP 224
+ C + D LE++ E VP+CP C G ++P
Sbjct: 117 VNCGSKYD-------LEEV---------------KYAKKHE------VPRCPKCGGIIRP 148
Query: 225 DIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVS 261
D+V FG+ +P+ + + + D +VLGSSL V
Sbjct: 149 DVVLFGEPLPQALLREAIEAAKEADLFIVLGSSLVVY 185
>gnl|CDD|238703 cd01412, SIRT5_Af1_CobB, SIRT5_Af1_CobB: Eukaryotic, archaeal and
prokaryotic group (class3) which includes human sirtuin
SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli
CobB; and are members of the SIR2 family of proteins,
silent information regulator 2 (Sir2) enzymes which
catalyze NAD+-dependent protein/histone deacetylation.
Sir2 proteins have been shown to regulate gene
silencing, DNA repair, metabolic enzymes, and life span.
CobB is a bacterial sirtuin that deacetylates acetyl-CoA
synthetase at an active site lysine to stimulate its
enzymatic activity. .
Length = 224
Score = 144 bits (366), Expect = 1e-42
Identities = 70/221 (31%), Positives = 102/221 (46%), Gaps = 56/221 (25%)
Query: 51 KILVVTGAGISTESGIPDYRSEGVGLYARSD-----------KRPVQFQDFLKSRRVRIR 99
+++V+TGAGIS ESGIP +R GL+AR D + P +F RR +
Sbjct: 2 RVVVLTGAGISAESGIPTFRDAD-GLWARFDPEELATPEAFARDPELVWEFYNWRRRKA- 59
Query: 100 YWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGTA 159
QPN H AL ++E +ITQNVDGLH +AG++ VIE+HG+
Sbjct: 60 ------------LRAQPNPAHLALAELERRLPNVLLITQNVDGLHERAGSRNVIELHGSL 107
Query: 160 FRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCH 219
FRV C C Y + E I + +P+CP C
Sbjct: 108 FRVRCSSCGYVGEN------------------------------NEEIPEEELPRCPKCG 137
Query: 220 GDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTV 260
G L+P +V+FG+++P + + + D LV+G+S V
Sbjct: 138 GLLRPGVVWFGESLP-LALLEAVEALAKADLFLVIGTSGVV 177
>gnl|CDD|238702 cd01411, SIR2H, SIR2H: Uncharacterized prokaryotic Sir2 homologs
from several gram positive bacterial species and
Fusobacteria; and are members of the SIR2 family of
proteins, silent information regulator 2 (Sir2) enzymes
which catalyze NAD+-dependent protein/histone
deacetylation. Sir2 proteins have been shown to regulate
gene silencing, DNA repair, metabolic enzymes, and life
span.
Length = 225
Score = 129 bits (327), Expect = 7e-37
Identities = 65/224 (29%), Positives = 100/224 (44%), Gaps = 43/224 (19%)
Query: 42 LKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDK-RPVQF--QDFLKSRRVR- 97
L+ ++ +I+ TGAG+ST SGIPDYRS+ GLY K P DFL+ +
Sbjct: 1 LQHILKNAKRIVFFTGAGVSTASGIPDYRSKN-GLYNEIYKYSPEYLLSHDFLEREPEKF 59
Query: 98 IRYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHG 157
++ N F +PN H + ++E L +ITQN+DGLH KAG+K V+E HG
Sbjct: 60 YQFVKENLY----FPDAKPNIIHQKMAELE-KMGLKAVITQNIDGLHQKAGSKNVVEFHG 114
Query: 158 TAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPH 217
+ +R+ C C K E L P
Sbjct: 115 SLYRIYCTVC------GKTVDWEEYLK---------------------------SPYHAK 141
Query: 218 CHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVS 261
C G ++PDIV + + + +E+ + D ++++G+S V
Sbjct: 142 CGGVIRPDIVLYEEMLNESVIEEAIQAIEKADLLVIVGTSFVVY 185
>gnl|CDD|238699 cd01408, SIRT1, SIRT1: Eukaryotic group (class1) which includes
human sirtuins SIRT1-3 and yeast Hst1-4; and are members
of the SIR2 family of proteins, silent information
regulator 2 (Sir2) enzymes which catalyze NAD+-dependent
protein/histone deacetylation. Sir2 proteins have been
shown to regulate gene silencing, DNA repair, and life
span. The most-studied function, gene silencing,
involves the inactivation of chromosome domains
containing key regulatory genes by packaging them into a
specialized chromatin structure that is inaccessible to
DNA-binding proteins. The nuclear SIRT1 has been shown
to target the p53 tumor suppressor protein for
deacetylation to suppress DNA damage, and the
cytoplasmic SIRT2 homolog has been shown to target
alpha-tubulin for deacetylation for the maintenance of
cell integrity.
Length = 235
Score = 128 bits (325), Expect = 2e-36
Identities = 73/224 (32%), Positives = 104/224 (46%), Gaps = 51/224 (22%)
Query: 51 KILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLK--SRRVRIRYWARNFVGW 108
KI+V+ GAGIST +GIPD+RS G GLYA + L I Y+ +N
Sbjct: 2 KIVVLVGAGISTSAGIPDFRSPGTGLYANLAR------YNLPYPEAMFDISYFRKN---- 51
Query: 109 PR-FSS---------FQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAG--NKKVIEMH 156
PR F + F+P+ HY +K +ED L TQN+D L AG + ++IE H
Sbjct: 52 PRPFYALAKELYPGQFKPSVAHYFIKLLEDKGLLLRNYTQNIDTLERVAGVPDDRIIEAH 111
Query: 157 GTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCP 216
G+ C+ C ++ MR E I VP+CP
Sbjct: 112 GSFATAHCIKCKHKYP------------------GDWMR---------EDIFNQEVPKCP 144
Query: 217 HCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTV 260
C G +KPDIVFFG+++P ++ D ++V+G+SL V
Sbjct: 145 RCGGLVKPDIVFFGESLPSRFFSHMEEDKEEADLLIVIGTSLKV 188
>gnl|CDD|172627 PRK14138, PRK14138, NAD-dependent deacetylase; Provisional.
Length = 244
Score = 128 bits (324), Expect = 3e-36
Identities = 71/224 (31%), Positives = 113/224 (50%), Gaps = 38/224 (16%)
Query: 42 LKQFIEKYNK---ILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRVRI 98
+K+F+E N+ + +TGAGIST SGIPD+R G+Y + + DF S
Sbjct: 1 MKEFLELLNESRLTVTLTGAGISTPSGIPDFRGPQ-GIYKKYPQNVFDI-DFFYSHPEEF 58
Query: 99 RYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGT 158
+A+ + +P + +PN H L ++E+ + +ITQN+D LH KAG+KKVIE+HG
Sbjct: 59 YRFAKEGI-FPMLEA-KPNLAHVLLAKLEEKGLIEAVITQNIDRLHQKAGSKKVIELHGN 116
Query: 159 AFRVMCLGC--DYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCP 216
C+ C Y ++ D++ E + K VP+C
Sbjct: 117 VEEYYCVRCGKRYTVE-------------DVI----------------EKLEKSDVPRCD 147
Query: 217 HCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTV 260
C G ++P+IVFFG+ +P+ + + L ++V+GSSL V
Sbjct: 148 DCSGLIRPNIVFFGEALPQDALREAIRLSSKASLMIVMGSSLVV 191
>gnl|CDD|238701 cd01410, SIRT7, SIRT7: Eukaryotic and prokaryotic group (class4)
which includes human sirtuin SIRT6, SIRT7, and several
bacterial homologs; and are members of the SIR2 family
of proteins, silent information regulator 2 (Sir2)
enzymes which catalyze NAD+-dependent protein/histone
deacetylation. Sir2 proteins have been shown to regulate
gene silencing, DNA repair, metabolic enzymes, and life
span.
Length = 206
Score = 124 bits (314), Expect = 5e-35
Identities = 66/216 (30%), Positives = 89/216 (41%), Gaps = 53/216 (24%)
Query: 50 NKILVVTGAGISTESGIPDYRS-EGVGLYARSDKRPVQFQDFLKSRRVRIRYWARNFVGW 108
++V TGAGIST +GIPD+R GV DK R W
Sbjct: 1 KHLVVFTGAGISTSAGIPDFRGPNGVWTLLPEDKG------------RRRFSW------- 41
Query: 109 PRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGN--KKVIEMHGTAFRVMCLG 166
RF +P H AL ++E L ++I+QNVDGLH ++G +K+ E+HG F +C
Sbjct: 42 -RFRRAEPTLTHMALVELERAGLLKFVISQNVDGLHLRSGLPREKLSELHGNMFIEVCKS 100
Query: 167 C--DYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDLKP 224
C +Y D + GD +ET +C C G LK
Sbjct: 101 CGPEYVRDD-------------------VVETRGD----KET-----GRRCHACGGILKD 132
Query: 225 DIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTV 260
IV FG+ +P D L LG+SL V
Sbjct: 133 TIVDFGERLPPENWMGAAAAACRADLFLCLGTSLQV 168
>gnl|CDD|173599 PTZ00409, PTZ00409, Sir2 (Silent Information Regulator) protein;
Provisional.
Length = 271
Score = 109 bits (274), Expect = 1e-28
Identities = 66/223 (29%), Positives = 105/223 (47%), Gaps = 33/223 (14%)
Query: 42 LKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPV-QFQDFLKSRRVRIRY 100
L I K ++ +TG+G S ES IP +R ++++ D + F K +I
Sbjct: 21 LADMIRKCKYVVALTGSGTSAESNIPSFRGPSSSIWSKYDPKIYGTIWGFWKYPE-KIWE 79
Query: 101 WARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAF 160
R+ + N H AL +E L +++TQNVDGLH ++GN KVI +HG+ F
Sbjct: 80 VIRDIS---SDYEIELNPGHVALSTLESLGYLKFVVTQNVDGLHEESGNTKVIPLHGSVF 136
Query: 161 RVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFH--VPQCPHC 218
C C I + KI M ++T H P+CP C
Sbjct: 137 EARCCTCRKTI---QLNKI----------------------MLQKTSHFMHQLPPECP-C 170
Query: 219 HGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTVS 261
G KP+++ FG+ IP+ +++ + + CD +LV+G+S +VS
Sbjct: 171 GGIFKPNVILFGEVIPKSLLKQAEKEIDKCDLLLVVGTSSSVS 213
>gnl|CDD|240405 PTZ00408, PTZ00408, NAD-dependent deacetylase; Provisional.
Length = 242
Score = 102 bits (257), Expect = 2e-26
Identities = 63/223 (28%), Positives = 101/223 (45%), Gaps = 46/223 (20%)
Query: 46 IEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQD-FLKSRRVRIRYW--- 101
++ I ++TGAGIS ESGI +R GL+ V D FL++ + R++
Sbjct: 1 MKACRCITILTGAGISAESGISTFRDGN-GLWENHRVEDVATPDAFLRNPALVQRFYNER 59
Query: 102 ARNFVGWPRFSSFQPNANHYALKQMEDNEKLSY--IITQNVDGLHYKAGNKKVIEMHGTA 159
R + SS +PN H+AL ++E + ++TQNVD LH +AG+ V+ MHG
Sbjct: 60 RRALL----SSSVKPNKAHFALAKLEREYRGGKVVVVTQNVDNLHERAGSTHVLHMHGEL 115
Query: 160 FRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCH 219
+V C H F + E G +C C
Sbjct: 116 LKVRCTA-----TGHVF-------------DWTEDVVHG-------------SSRCKCCG 144
Query: 220 --GDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTV 260
G L+P IV+FG+ +P + M++I+ ++ D + +G+S V
Sbjct: 145 CVGTLRPHIVWFGE-MPLY-MDEIESVMSKTDLFVAVGTSGNV 185
>gnl|CDD|185600 PTZ00410, PTZ00410, NAD-dependent SIR2; Provisional.
Length = 349
Score = 103 bits (257), Expect = 1e-25
Identities = 74/237 (31%), Positives = 109/237 (45%), Gaps = 40/237 (16%)
Query: 34 VEESDINKLKQFIEKYN--KILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQ----- 86
V E L ++IE+ N KILV+ GAGIS +GIPD+RS G+YA+ K +
Sbjct: 12 VGEPTFEGLARYIERNNVTKILVMVGAGISVAAGIPDFRSPHTGIYAKLGKYNLNSPTDA 71
Query: 87 FQDFLKSRRVRIRY-WARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHY 145
F L + + Y AR WP FQP A H+ ++ + D +L TQN+DGL
Sbjct: 72 FSLTLLREKPEVFYSIAREMDLWP--GHFQPTAVHHFIRLLADEGRLLRCCTQNIDGLER 129
Query: 146 KAG--NKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMS 203
AG ++E HG+ C+ C + D+E +
Sbjct: 130 AAGVPPSLLVEAHGSFSAASCIEC-----HTPY----------------------DIEQA 162
Query: 204 EETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTV 260
VP C C G +KPD+VFFG+N+P + H + + +L++G+SL V
Sbjct: 163 YLEARSGKVPHCSTCGGIVKPDVVFFGENLPDAFFN-VHHDIPEAELLLIIGTSLQV 218
>gnl|CDD|223390 COG0313, COG0313, Predicted methyltransferases [General function
prediction only].
Length = 275
Score = 34.9 bits (81), Expect = 0.027
Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 7/55 (12%)
Query: 5 RIQRLFFKHFIVPPDVTSRSISFIPKHKPVEESDINKLKQFIEKYNKILVVTGAG 59
R+ R H + + IS+ H+ E+ + KL ++K + +V+ AG
Sbjct: 40 RVTRKLLSHL----GIKTPLISY---HEHNEKEKLPKLIPLLKKGKSVALVSDAG 87
>gnl|CDD|225724 COG3183, COG3183, Predicted restriction endonuclease [Defense
mechanisms].
Length = 272
Score = 29.8 bits (67), Expect = 1.2
Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 11/71 (15%)
Query: 151 KVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKF 210
I +HGT C C++ FQK ++ IE P + E
Sbjct: 189 AAIAIHGTV----CDVCEF-----DFQKKYGEIGKGY-IEVHHKIPIAEFEGEYHVNPLT 238
Query: 211 H-VPQCPHCHG 220
P CP+CH
Sbjct: 239 DLAPLCPNCHK 249
>gnl|CDD|237084 PRK12378, PRK12378, hypothetical protein; Provisional.
Length = 235
Score = 29.8 bits (68), Expect = 1.2
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 174 HKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKF 210
HK +K LE + ++ EM P VE+S E + +F
Sbjct: 178 HKVKKALEAAGIEFLVAELEMIPQNPVELSGEDLEQF 214
>gnl|CDD|182862 PRK10953, cysJ, sulfite reductase subunit alpha; Provisional.
Length = 600
Score = 30.1 bits (68), Expect = 1.3
Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 18/102 (17%)
Query: 117 NANHYALKQMEDNEKLSYIIT---------QNVDGLHYKAGNKKVIEMHGTAFRVMCLG- 166
NA Y KQ+ EKL ++T + LH +KK ++ TAF V LG
Sbjct: 97 NAGDYKFKQI-AQEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFGLGD 155
Query: 167 CDYEIDRHKFQKILEDLNPDLM-IESQEM--RPDGDVEMSEE 205
YE F + +D + L + ++ + R D DVE
Sbjct: 156 TSYE----FFCQAGKDFDSKLAELGAERLLDRVDADVEYQAA 193
>gnl|CDD|238697 cd01406, SIR2-like, Sir2-like: Prokaryotic group of uncharacterized
Sir2-like proteins which lack certain key catalytic
residues and conserved zinc binding cysteines; and are
members of the SIR2 superfamily of proteins, silent
information regulator 2 (Sir2) enzymes which catalyze
NAD+-dependent protein/histone deacetylation.
Length = 242
Score = 29.7 bits (67), Expect = 1.4
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 19/114 (16%)
Query: 57 GAGISTESGIPDYRS-------------EGVGLYARSDKRPVQFQDFLKSRRVRIRYWAR 103
GAG+S SG+PD+++ +G + A+ + ++ + L+ I
Sbjct: 8 GAGVSVSSGLPDWKTLLDEIASELGLEIDGYSVEAKDENDYLELAELLEKEFGTIG-IKI 66
Query: 104 NFVGWPRFS-SFQPNANHYAL-KQMEDNEKLSYIITQNVDGL---HYKAGNKKV 152
N V + F+P+ H L + +NE IIT N D L K NK V
Sbjct: 67 NAVLEEKTRPDFEPSPLHELLLRLFINNEGDVIIITTNYDRLLETALKEINKVV 120
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 29.7 bits (67), Expect = 1.5
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 9 LFFKHFIVPPDVTSRSISFIPKHKPVEESDINKLKQFIEKY 49
L KHF V + R+I F+PK P + + K K I+ Y
Sbjct: 121 LAVKHFSVEGQLEFRAILFVPKRAPFDLFESYKKKNNIKLY 161
>gnl|CDD|183485 PRK12380, PRK12380, hydrogenase nickel incorporation protein HybF;
Provisional.
Length = 113
Score = 28.4 bits (63), Expect = 1.8
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 211 HVPQCPHCHGD 221
H QCPHCHG+
Sbjct: 85 HDAQCPHCHGE 95
>gnl|CDD|182745 PRK10803, PRK10803, tol-pal system protein YbgF; Provisional.
Length = 263
Score = 29.4 bits (66), Expect = 2.0
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 20/78 (25%)
Query: 56 TGAGISTESGIPDYRSEGVGLY---ARSDKRPVQFQDFLKSRRVRIRYWARNFVGWPRFS 112
GA + + DY + + L +R D V FQ+F+K +P S
Sbjct: 133 AGAPVQSGDANTDY-NAAIALVQDKSRQDDAIVAFQNFVKK--------------YPD-S 176
Query: 113 SFQPNANHYALKQMEDNE 130
++QPNAN Y L Q+ N+
Sbjct: 177 TYQPNAN-YWLGQLNYNK 193
>gnl|CDD|234856 PRK00885, PRK00885, phosphoribosylamine--glycine ligase;
Provisional.
Length = 420
Score = 29.3 bits (67), Expect = 2.3
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 11/53 (20%)
Query: 25 ISFIPKHKPVEESDINKLKQFIEKYNKI-LVVTG------AGIS---TESGIP 67
+ + ++ ++ +DI L F ++ I L V G AGI +G+P
Sbjct: 37 TALLAENVVIDVTDIEALVAFAKE-EGIDLTVVGPEAPLVAGIVDAFRAAGLP 88
>gnl|CDD|240341 PTZ00272, PTZ00272, heat shock protein 83 kDa (Hsp83); Provisional.
Length = 701
Score = 29.3 bits (65), Expect = 2.3
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 12 KHFIVPPDVTSRSISFIPKHKPVEESDINKLKQFIEKY 49
KHF V + RSI F+PK P + + NK + I+ Y
Sbjct: 299 KHFSVEGQLEFRSIMFVPKRAPFDMFEPNKKRNNIKLY 336
>gnl|CDD|239301 cd03003, PDI_a_ERdj5_N, PDIa family, N-terminal ERdj5 subfamily;
ERdj5, also known as JPDI and macrothioredoxin, is a
protein containing an N-terminal DnaJ domain and four
redox active TRX domains. This subfamily is comprised of
the first TRX domain of ERdj5 located after the DnaJ
domain at the N-terminal half of the protein. ERdj5 is a
ubiquitous protein localized in the endoplasmic
reticulum (ER) and is abundant in secretory cells. It's
transcription is induced during ER stress. It interacts
with BiP through its DnaJ domain in an ATP-dependent
manner. BiP, an ER-resident member of the Hsp70
chaperone family, functions in ER-associated degradation
and protein translocation.
Length = 101
Score = 27.5 bits (61), Expect = 3.2
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 197 DGDVEMSEETISKFHVPQCPHCHGDLKP 224
D V E F+ P+C HCH DL P
Sbjct: 12 DAAVNSGEIWFVNFYSPRCSHCH-DLAP 38
>gnl|CDD|173805 cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 family domain in
SKI-1-like proteins. SKI-1 (type I membrane-bound
subtilisin-kexin-isoenzyme) proteins are secretory
Ca2+-dependent serine proteinases cleave at nonbasic
residues: Thr, Leu, and Lys. SKI-1s play a critical
role in the regulation of the synthesis and metabolism
of cholesterol and fatty acid metabolism. Members of
the peptidases S8 and S35 clan include endopeptidases,
exopeptidases and also a tripeptidyl-peptidase. The S8
family has an Asp/His/Ser catalytic triad similar to
that found in trypsin-like proteases, but do not share
their three-dimensional structure and are not homologous
to trypsin. The S53 family contains a catalytic triad
Glu/Asp/Ser. The stability of these enzymes may be
enhanced by calcium, some members have been shown to
bind up to 4 ions via binding sites with different
affinity. Some members of this clan contain disulfide
bonds. These enzymes can be intra- and extracellular,
some function at extreme temperatures and pH values.
Length = 255
Score = 28.6 bits (64), Expect = 3.5
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 216 PHCHGDLKPDIVFFGDNI 233
P +G +KPDIV +G +
Sbjct: 180 PGGYGRVKPDIVTYGSGV 197
>gnl|CDD|216142 pfam00834, Ribul_P_3_epim, Ribulose-phosphate 3 epimerase family.
This enzyme catalyzes the conversion of D-ribulose
5-phosphate into D-xylulose 5-phosphate.
Length = 201
Score = 27.7 bits (62), Expect = 5.0
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 13/76 (17%)
Query: 187 LMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDL--------KPDIVFFGDNIPRHRM 238
LM+E + E + IS FH H H + K +V N P +
Sbjct: 64 LMVEEPDRIIPDFAEAGADIIS-FHAEASDHPHRTIQLIKEAGAKAGLVL---N-PATPL 118
Query: 239 EKIDHLVRSCDGVLVL 254
+ I++L+ D VL++
Sbjct: 119 DAIEYLLDDLDLVLLM 134
>gnl|CDD|128971 smart00732, YqgFc, Likely ribonuclease with RNase H fold. YqgF
proteins are likely to function as an alternative to
RuvC in most bacteria, and could be the principal
holliday junction resolvases in low-GC Gram-positive
bacteria. In Spt6p orthologues, the catalytic residues
are substituted indicating that they lack enzymatic
functions.
Length = 99
Score = 26.8 bits (60), Expect = 5.3
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 28 IPKHKPVEESDINKLKQFIEKYNKILVVTGA 58
+ E D +LK+ I+KY L+V G
Sbjct: 30 VIPRTNKEA-DAARLKKLIKKYQPDLIVIGL 59
>gnl|CDD|234708 PRK00274, ksgA, 16S ribosomal RNA methyltransferase KsgA/Dim1
family protein; Reviewed.
Length = 272
Score = 27.8 bits (63), Expect = 5.4
Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 4 CRIQRLFF---KHFIVPPDVTSRSISFIPKHKP-VEESDINKLKQFI 46
C ++++F F+ PP V S + +P+ +P V D + +
Sbjct: 167 CDVEKVFDVPPSAFVPPPKVDSAVVRLVPRKEPPVPVKDEELFFRVV 213
>gnl|CDD|233589 TIGR01828, pyru_phos_dikin, pyruvate, phosphate dikinase. This
model represents pyruvate,phosphate dikinase, also
called pyruvate,orthophosphate dikinase. It is similar
in sequence to other PEP-utilizing enzymes [Energy
metabolism, Other].
Length = 856
Score = 28.1 bits (63), Expect = 6.1
Identities = 28/128 (21%), Positives = 44/128 (34%), Gaps = 33/128 (25%)
Query: 138 QNVDGLHYKAGNK--------KVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMI 189
+ V+GL GN + I+M G I F++ILE + + +
Sbjct: 113 ETVEGLAKLTGNARFAYDSYRRFIQMFGDVV--------LGIPHELFEQILEAMKEEKGV 164
Query: 190 ESQEMRPDGDVEMSEETISKFH----------VPQCPHCHGDLKPDIVFFGDNIPR---- 235
++ D + +E I K+ PQ P +L VF N PR
Sbjct: 165 ---KLDTDLTADDLKELIEKYKAIYREATGKPFPQDPKEQLELAIKAVFDSWNNPRAIVY 221
Query: 236 HRMEKIDH 243
R+ I
Sbjct: 222 RRLNDIPE 229
>gnl|CDD|237197 PRK12770, PRK12770, putative glutamate synthase subunit beta;
Provisional.
Length = 352
Score = 27.6 bits (62), Expect = 6.3
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 29 PKHKPVEESD-----INKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGV 74
P H+ EE D I L++ ++KY+ +L+ TG S + GIP GV
Sbjct: 96 PLHE--EEGDEFVERIVSLEELVKKYDAVLIATGTWKSRKLGIPGEDLPGV 144
>gnl|CDD|188398 TIGR03882, cyclo_dehyd_2, bacteriocin biosynthesis cyclodehydratase
domain. This model describes a ThiF-like domain of a
fusion protein found in clusters associated with the
production of TOMMs (thiazole/oxazole-modified
microcins), small bacteriocins with characteristic
heterocycle modifications. This domain is presumed to
act as a cyclodehydratase, as do members of the SagC
family modeled by TIGR03603.
Length = 164
Score = 27.3 bits (61), Expect = 6.4
Identities = 9/13 (69%), Positives = 9/13 (69%), Gaps = 1/13 (7%)
Query: 213 PQCPHCHGDLKPD 225
PQCP C GDL D
Sbjct: 110 PQCPVC-GDLPED 121
>gnl|CDD|226340 COG3819, COG3819, Predicted membrane protein [Function unknown].
Length = 229
Score = 27.4 bits (61), Expect = 7.0
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 45 FIEKYNKILVVTGAGIST--ESGIP 67
FI K+N ILVV AGI T SG+
Sbjct: 16 FILKFNPILVVVVAGIVTGLVSGMS 40
>gnl|CDD|216150 pfam00849, PseudoU_synth_2, RNA pseudouridylate synthase. Members
of this family are involved in modifying bases in RNA
molecules. They carry out the conversion of uracil bases
to pseudouridine. This family includes RluD, a
pseudouridylate synthase that converts specific uracils
to pseudouridine in 23S rRNA. RluA from E. coli converts
bases in both rRNA and tRNA.
Length = 149
Score = 27.0 bits (60), Expect = 7.2
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 68 DYRSEGVGLYARSDKRPVQFQDFLKSRRVRIRYWA 102
D + G+ L A+ + + R+V Y A
Sbjct: 44 DRNTSGLLLLAKDGEAANKLNKLFPERKVEKEYLA 78
>gnl|CDD|215932 pfam00465, Fe-ADH, Iron-containing alcohol dehydrogenase.
Length = 323
Score = 27.6 bits (62), Expect = 7.2
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 39 INKLKQFIEKYNKILVVTGAGI 60
+ +L + +++ + L+VT +
Sbjct: 11 LEELGEELKRLGRALIVTDPSL 32
>gnl|CDD|149635 pfam08646, Rep_fac-A_C, Replication factor-A C terminal domain.
This domain is found at the C terminal of replication
factor A. Replication factor A (RPA) binds
single-stranded DNA and is involved in replication,
repair, and recombination of DNA.
Length = 146
Score = 26.8 bits (60), Expect = 7.5
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 149 NKKVIEMHGTAFRVMCLGCDYEIDRHKFQKIL 180
NKKV E +R C CD E K++ IL
Sbjct: 27 NKKVTEQGDGTWR--CEKCDKEFPEPKYRYIL 56
>gnl|CDD|188261 TIGR02949, anti_SigH_actin, anti-sigma factor, TIGR02949 family.
This group of anti-sigma factors are associated in an
apparent operon with a family of sigma-70 family sigma
factors (TIGR02947). They and appear by homology, tree
building, bidirectional best hits and one-to-a-genome
distribution, to represent a conserved family. This
family is restricted to the Actinobacteria
[Transcription, Transcription factors].
Length = 84
Score = 25.9 bits (57), Expect = 8.1
Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 2/22 (9%)
Query: 199 DVEMSEETISKF--HVPQCPHC 218
D E +E+ + H+ CP C
Sbjct: 21 DGECTEDDAERLRRHLAACPEC 42
>gnl|CDD|224890 COG1979, COG1979, Uncharacterized oxidoreductases, Fe-dependent
alcohol dehydrogenase family [Energy production and
conversion].
Length = 384
Score = 27.3 bits (61), Expect = 9.2
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 39 INKLKQFIEKYNKILVVTGAGISTESGIPD 68
I +L++ I K K+L+V G G ++G+ D
Sbjct: 19 IAELREEIPKDAKVLIVYGGGSIKKNGVYD 48
>gnl|CDD|240761 cd12315, RRM1_RBM19_MRD1, RNA recognition motif 1 in RNA-binding
protein 19 (RBM19), yeast multiple RNA-binding
domain-containing protein 1 (MRD1) and similar
proteins. This subfamily corresponds to the RRM1 of
RBM19 and MRD1. RBM19, also termed RNA-binding domain-1
(RBD-1), is a nucleolar protein conserved in
eukaryotes. It is involved in ribosome biogenesis by
processing rRNA and is essential for preimplantation
development. It has a unique domain organization
containing 6 conserved RNA recognition motifs (RRMs),
also termed RBDs (RNA binding domains) or RNPs
(ribonucleoprotein domains). MRD1 is encoded by a novel
yeast gene MRD1 (multiple RNA-binding domain). It is
well-conserved in yeast and its homologs exist in all
eukaryotes. MRD1 is present in the nucleolus and the
nucleoplasm. It interacts with the 35 S precursor rRNA
(pre-rRNA) and U3 small nucleolar RNAs (snoRNAs). It is
essential for the initial processing at the A0-A2
cleavage sites in the 35 S pre-rRNA. MRD1 contains 5
conserved RRMs, which may play an important structural
role in organizing specific rRNA processing events. .
Length = 77
Score = 25.7 bits (57), Expect = 9.8
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 8/36 (22%)
Query: 1 MTTCRIQRLFFKHFIVPPDV--------TSRSISFI 28
+T ++ F KH DV SR I+FI
Sbjct: 12 LTEAELKEHFSKHGGEITDVKLLRTEDGKSRRIAFI 47
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.139 0.422
Gapped
Lambda K H
0.267 0.0797 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,867,621
Number of extensions: 1328949
Number of successful extensions: 1756
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1723
Number of HSP's successfully gapped: 63
Length of query: 268
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 173
Effective length of database: 6,723,972
Effective search space: 1163247156
Effective search space used: 1163247156
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.0 bits)