RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1452
(268 letters)
>d2b4ya1 c.31.1.5 (A:36-302) NAD-dependent deacetylase sirtuin-5
{Human (Homo sapiens) [TaxId: 9606]}
Length = 267
Score = 177 bits (450), Expect = 1e-55
Identities = 64/228 (28%), Positives = 107/228 (46%), Gaps = 15/228 (6%)
Query: 37 SDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRV 96
S + ++F K I++++GAG+S ESG+P +R G G + + L
Sbjct: 3 SSMADFRKFFAKAKHIVIISGAGVSAESGVPTFRGAG-GYWRKWQ--AQDLATPLAFAHN 59
Query: 97 RIRYWARNFVGWPRFSSFQPNANHYALKQME----DNEKLSYIITQNVDGLHYKAGNKKV 152
R W S +PNA H A+ + E + +ITQN+D LH KAG K +
Sbjct: 60 PSRVWEFYHYRREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTKNL 119
Query: 153 IEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHV 212
+E+HG+ F+ C C + +K +P S + P+ + + + K
Sbjct: 120 LEIHGSLFKTRCTSCGVVAENYK--------SPICPALSGKGAPEPGTQDASIPVEKLPR 171
Query: 213 PQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTV 260
+ C G L+P +V+FG+N+ +E++D + CD LV+G+S V
Sbjct: 172 CEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVV 219
>d1j8fa_ c.31.1.5 (A:) Sirt2 histone deacetylase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 323
Score = 154 bits (390), Expect = 7e-46
Identities = 60/238 (25%), Positives = 105/238 (44%), Gaps = 31/238 (13%)
Query: 29 PKHKPVEESDINKLKQFI--EKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQ 86
K + ++E + + +++ E+ +++ + GAGIST +GIPD+RS GLY +K +
Sbjct: 21 QKERLLDELTLEGVARYMQSERCRRVICLVGAGISTSAGIPDFRSPSTGLYDNLEKYHLP 80
Query: 87 FQDFLKSRRVRIRYWARNFVGWPRF--SSFQPNANHYALKQMEDNEKLSYIITQNVDGLH 144
+ + + ++ F F+P HY ++ ++D L TQN+D L
Sbjct: 81 YPEAIFEISYFKKHPEPFFALAKELYPGQFKPTICHYFMRLLKDKGLLLRCYTQNIDTLE 140
Query: 145 YKAG--NKKVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEM 202
AG + ++E HGT + C+ R + +
Sbjct: 141 RIAGLEQEDLVEAHGTFYTSHCVSAS-------------------------CRHEYPLSW 175
Query: 203 SEETISKFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTV 260
+E I P+C C +KPDIVFFG+++P + D +LV+G+SL V
Sbjct: 176 MKEKIFSEVTPKCEDCQSLVKPDIVFFGESLPARFFSCMQSDFLKVDLLLVMGTSLQV 233
>d1s5pa_ c.31.1.5 (A:) NAD-dependent deacetylase CobB {Escherichia
coli [TaxId: 562]}
Length = 235
Score = 140 bits (353), Expect = 2e-41
Identities = 52/211 (24%), Positives = 83/211 (39%), Gaps = 34/211 (16%)
Query: 51 KILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRVRIRYWARNFVGWPR 110
++LV+TGAGIS ESGI +R+ GL+ V + ++ + +
Sbjct: 3 RVLVLTGAGISAESGIRTFRAAD-GLWEEHRVEDVATPEGFDRDPELVQAFYNARRRQLQ 61
Query: 111 FSSFQPNANHYALKQMEDN-EKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDY 169
QPNA H AL +++D ++TQN+D LH +AGN VI MHG +V C
Sbjct: 62 QPEIQPNAAHLALAKLQDALGDRFLLVTQNIDNLHERAGNTNVIHMHGELLKVRCSQSGQ 121
Query: 170 EIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDLKPDIVFF 229
+D ++ C L+P +V+F
Sbjct: 122 VLDWTGD------------------------------VTPEDKCHCCQFPAPLRPHVVWF 151
Query: 230 GDNIPRHRMEKIDHLVRSCDGVLVLGSSLTV 260
G+ +I + D + +G+S V
Sbjct: 152 GEMPLGMD--EIYMALSMADIFIAIGTSGHV 180
>d1ma3a_ c.31.1.5 (A:) AF0112, Sir2 homolog (Sir2-AF2) {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 252
Score = 139 bits (352), Expect = 4e-41
Identities = 62/225 (27%), Positives = 99/225 (44%), Gaps = 30/225 (13%)
Query: 36 ESDINKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRR 95
E +I K + + K +V TGAGIS ESGIP +R E GL+ + D V K
Sbjct: 2 EDEIRKAAEILAKSKHAVVFTGAGISAESGIPTFRGED-GLWRKYDPEEVASISGFKRNP 60
Query: 96 VRIRYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEM 155
R + + +PN HYA+ ++E + +ITQN+D LH +AG+++V+E+
Sbjct: 61 ---RAFWEFSMEMKDKLFAEPNPAHYAIAELERMGIVKAVITQNIDMLHQRAGSRRVLEL 117
Query: 156 HGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQC 215
HG+ ++ CL C D +F +
Sbjct: 118 HGSMDKLDCLDCHETYDWSEFVEDFNKGEIP--------------------------RCR 151
Query: 216 PHCHGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTV 260
+KP +V FG+ +P+ + + + CD +V+GSSL V
Sbjct: 152 KCGSYYVKPRVVLFGEPLPQRTLFEAIEEAKHCDAFMVVGSSLVV 196
>d1m2ka_ c.31.1.5 (A:) AF1676, Sir2 homolog (Sir2-AF1?) {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 249
Score = 135 bits (340), Expect = 2e-39
Identities = 60/220 (27%), Positives = 98/220 (44%), Gaps = 33/220 (15%)
Query: 41 KLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRVRIRY 100
KL + I + ++ +TGAG+S ESGIP +R + GL+ R RP + + + +
Sbjct: 4 KLLKTIAESKYLVALTGAGVSAESGIPTFRGKD-GLWNRY--RPEELANPQAFAKDPEKV 60
Query: 101 WARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAF 160
W + + QPN H A ++E L +ITQNVD LH +AG++ VI +HG+
Sbjct: 61 WKWYAWRMEKVFNAQPNKAHQAFAELERLGVLKCLITQNVDDLHERAGSRNVIHLHGSLR 120
Query: 161 RVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHG 220
V C C+ + KI +P+C C
Sbjct: 121 VVRCTSCNNSFEVESAPKI------------------------------PPLPKCDKCGS 150
Query: 221 DLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTV 260
L+P +V+ G+ +P +++ V D ++V G+S V
Sbjct: 151 LLRPGVVWAGEMLPPDVLDRAMREVERADVIIVAGTSAVV 190
>d1yc5a1 c.31.1.5 (A:1-245) NAD-dependent deacetylase NpdA
{Thermotoga maritima [TaxId: 2336]}
Length = 245
Score = 132 bits (333), Expect = 3e-38
Identities = 63/222 (28%), Positives = 98/222 (44%), Gaps = 31/222 (13%)
Query: 39 INKLKQFIEKYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLKSRRVRI 98
+ + + + + +TGAGIST SGIPD+R G+Y + + F
Sbjct: 3 MKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPN-GIYKKYSQNVFDIDFFYSHPEEFY 61
Query: 99 RYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNKKVIEMHGT 158
R+ +PN H L ++E+ + +ITQN+D LH +AG+KKVIE+HG
Sbjct: 62 RFAKEG---IFPMLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELHGN 118
Query: 159 AFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHC 218
C+ C+ + K LE VP C C
Sbjct: 119 VEEYYCVRCEKKYTVEDVIKKLES---------------------------SDVPLCDDC 151
Query: 219 HGDLKPDIVFFGDNIPRHRMEKIDHLVRSCDGVLVLGSSLTV 260
+ ++P+IVFFG+N+P+ + + L ++VLGSSL V
Sbjct: 152 NSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVV 193
>d1q1aa_ c.31.1.5 (A:) Hst2 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 289
Score = 130 bits (328), Expect = 4e-37
Identities = 61/245 (24%), Positives = 96/245 (39%), Gaps = 43/245 (17%)
Query: 35 EESDINKLKQFIE--KYNKILVVTGAGISTESGIPDYRSEGVGLYARSDKRPVQFQDFLK 92
E + K+ ++ K++ + GAGIST GIPD+RS G GLY + + + + +
Sbjct: 4 TEMSVRKIAAHMKSNPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVF 63
Query: 93 SRRV--RIRYWARNFVGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHYKAGNK 150
+F+P+ HY LK +D + L + TQN+D L +AG K
Sbjct: 64 DVDFFQSDPLPFYTLAKELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVK 123
Query: 151 --KVIEMHGTAFRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETIS 208
+IE HG+ C+GC F+ L +
Sbjct: 124 DDLIIEAHGSFAHCHCIGCGKVYPPQVFKSKLAE------------------------HP 159
Query: 209 KFHVPQCPHCHGDLKPDIVFFGDNIPRHRMEKIDH-------------LVRSCDGVLVLG 255
+C C +KP IVFFG+++P E + V+V+G
Sbjct: 160 IKDFVKCDVCGELVKPAIVFFGEDLPDSFSETWLNDSEWLREKITTSGKHPQQPLVIVVG 219
Query: 256 SSLTV 260
+SL V
Sbjct: 220 TSLAV 224
>d1oj7a_ e.22.1.2 (A:) Hypothetical oxidoreductase yqhD
{Escherichia coli [TaxId: 562]}
Length = 390
Score = 27.7 bits (60), Expect = 1.6
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 39 INKLKQFIEKYNKILVVTGAGISTESGIPD 68
I L++ I ++L+ G G ++G+ D
Sbjct: 22 IAGLREQIPHDARVLITYGGGSVKKTGVLD 51
>d1r4va_ a.22.1.4 (A:) Hypothetical protein Aq_328 {Aquifex aeolicus
[TaxId: 63363]}
Length = 151
Score = 26.2 bits (58), Expect = 2.5
Identities = 19/111 (17%), Positives = 38/111 (34%), Gaps = 12/111 (10%)
Query: 106 VGWPRFSSFQPNANHYALKQMEDNEKLSYIITQNVDGLHY------KAGNKKVIEMHGTA 159
G+ + + L E E L + L Y + + I +
Sbjct: 7 KGFDKLDHYFRTELDIDLTD-ETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALAD-- 63
Query: 160 FRVMCLGCDYEIDRHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKF 210
+ + E FQKI +D+ D ++E P ++ + E+ S++
Sbjct: 64 ---LNITKALEEHIKNFQKIEQDMGVDELLEYIAFIPPVEMNVGEDLKSEY 111
>d1wwia1 a.22.1.4 (A:1-148) Hypothetical protein TTHA1479 {Thermus
thermophilus [TaxId: 274]}
Length = 148
Score = 25.8 bits (57), Expect = 3.5
Identities = 11/90 (12%), Positives = 34/90 (37%), Gaps = 11/90 (12%)
Query: 127 EDNEKLSYIITQNVDGLHY------KAGNKKVIEMHGTAFRVMCLGCDYEIDRHKFQKIL 180
D +++S + + L K + +I + + + +F+++
Sbjct: 23 NDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPD-----LPIAKGLQETLQEFRRMD 77
Query: 181 EDLNPDLMIESQEMRPDGDVEMSEETISKF 210
L ++++ P D+E++E+ +
Sbjct: 78 TALELKPVLDALAALPPLDLEVAEDVRNLL 107
>d1usua_ d.14.1.8 (A:) Heat shock protein hsp82 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 256
Score = 26.5 bits (58), Expect = 3.9
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 9 LFFKHFIVPPDVTSRSISFIPKHKPVEESDINKLKQFIEKYNK 51
L+ KHF V + R+I FIPK P + + K K I+ Y +
Sbjct: 33 LYVKHFSVEGQLEFRAILFIPKRAPFDLFESKKKKNNIKLYVR 75
>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal
domain {Archaeoglobus fulgidus [TaxId: 2234]}
Length = 191
Score = 25.9 bits (56), Expect = 4.8
Identities = 16/122 (13%), Positives = 34/122 (27%), Gaps = 5/122 (4%)
Query: 116 PNANHYALKQME---DNEKLSYIITQNVDGLHYKAGNKKVIEMHGTAFRVMCLGCDYEID 172
+K + + K D + ++ L
Sbjct: 22 EKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVYA 81
Query: 173 RHKFQKILEDLNPDLMIESQEMRPDGDVEMSEETISKFHVPQCPHCHGDLKPDIVFFGDN 232
++E ++ + + PD ++M E ++KF+ HGDL V +
Sbjct: 82 WEGNAVLMELIDAKELYRVRVENPDEVLDMILEEVAKFY--HRGIVHGDLSQYNVLVSEE 139
Query: 233 IP 234
Sbjct: 140 GI 141
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 24.3 bits (52), Expect = 9.6
Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 4/52 (7%)
Query: 177 QKILEDLNPDLMIESQEMRPDG----DVEMSEETISKFHVPQCPHCHGDLKP 224
+ I + +E+ E G +E + ++ V +C C L
Sbjct: 9 EIINRVIARAEKMETMEQERIGRLVDRLETMRKNVAGDGVNRCILCGEQLGM 60
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.139 0.422
Gapped
Lambda K H
0.267 0.0655 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,062,453
Number of extensions: 51990
Number of successful extensions: 332
Number of sequences better than 10.0: 1
Number of HSP's gapped: 319
Number of HSP's successfully gapped: 31
Length of query: 268
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 184
Effective length of database: 1,254,276
Effective search space: 230786784
Effective search space used: 230786784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.0 bits)