BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14522
(298 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DQV|A Chain A, Crystal Structure Of Reductase (R) Domain Of Non-Ribosomal
Peptide Synthetase From Mycobacterium Tuberculosis
Length = 478
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 65/147 (44%), Gaps = 25/147 (17%)
Query: 131 SVFVTGGTGFMGKTLTEKLLRACPHLERVYLLVRPKKGKTVSERLDELFED------RLF 184
+V +TG TGF+G+ L +LLR R+ LVR + + RL++ F+ R F
Sbjct: 75 TVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRHF 134
Query: 185 SRLKAEVPHFRSKISVVTGDVSLPGLGLSAADRAVLRRNVTVVFHGAATVR-------FD 237
L A+ ++ VV GD S P LGL L V ++ AA V F
Sbjct: 135 KELAAD------RLEVVAGDKSEPDLGLDQPXWRRLAETVDLIVDSAAXVNAFPYHELFG 188
Query: 238 ENIK-----VAIAINI-FGSFVHVSTA 258
N+ + IA+ F +VSTA
Sbjct: 189 PNVAGTAELIRIALTTKLKPFTYVSTA 215
Score = 35.0 bits (79), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 73 SVFVTGGTGFMGKTLTEKLLRACPHLERVYLLVRPKKGKTVSERLDELFE--DREFYR 128
+V +TG TGF+G+ L +LLR R+ LVR + + RL++ F+ D E R
Sbjct: 75 TVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLR 132
>pdb|4F6L|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6L|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 508
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 56/136 (41%), Gaps = 15/136 (11%)
Query: 130 ASVFVTGGTGFMGKTLTEKLLRACPHLERVYLLVRPKKGKTVSERLDELFEDRLFSRLKA 189
+ +TG TGF+G L E L+ H R+Y +R + +L D FS
Sbjct: 151 GNTLLTGATGFLGAYLIEA-LQGYSH--RIYCFIRADNEEIAWYKLMTNLND-YFSEETV 206
Query: 190 EVPHFRSKISVVTGDVSLPGLGLSAADRAVLRRNVTVVFH-GAATVRFDENIKVAIAINI 248
E+ S I V+ GD D VL N+ + H GA T F ++ + +N+
Sbjct: 207 EM--MLSNIEVIVGD-------FECMDDVVLPENMDTIIHAGARTDHFGDDDEFE-KVNV 256
Query: 249 FGSFVHVSTAYTHCPR 264
G+ + A H R
Sbjct: 257 QGTVDVIRLAQQHHAR 272
>pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
pdb|1WVG|B Chain B, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
Length = 359
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 70/175 (40%), Gaps = 18/175 (10%)
Query: 123 DREFYRGASVFVTGGTGFMGKTLTEKLLRACPHLERVYLLVRPKKGKTVSE-----RLDE 177
D+ F++G VFVTG TGF G L+ L + + Y L P TV RL++
Sbjct: 3 DKNFWQGKRVFVTGHTGFKGSWLSLWLTEMGA-IVKGYALDAP----TVPSLFEIVRLND 57
Query: 178 LFED-----RLFSRLKAEVPHFRSKISVVTGDVSLPGLGLSAADRAVLRRNVTVVFHGAA 232
L E R F +L++ + F+ +I L L + NV H
Sbjct: 58 LMESHIGDIRDFEKLRSSIAEFKPEIVFHMAAQPLVRLSYEQPIK-TYSTNVMGTVHLLE 116
Query: 233 TVRFDENIKVAIAINIFGSFVHVSTAYTHCPRQEIDEVFYPPPYDYKDFMELVMS 287
TV+ NIK +NI + + + R+ Y P + K ELV S
Sbjct: 117 TVKQVGNIKA--VVNITSDKCYDNREWVWGYRENEPMGGYDPYSNSKGCAELVAS 169
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 66 QEFYRGASVFVTGGTGFMGKTLT 88
+ F++G VFVTG TGF G L+
Sbjct: 4 KNFWQGKRVFVTGHTGFKGSWLS 26
>pdb|4F6C|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6C|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 427
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 55/136 (40%), Gaps = 15/136 (11%)
Query: 130 ASVFVTGGTGFMGKTLTEKLLRACPHLERVYLLVRPKKGKTVSERLDELFEDRLFSRLKA 189
+ +TG TGF+G L E L+ H R+Y +R + +L D FS +
Sbjct: 70 GNTLLTGATGFLGAYLIEA-LQGYSH--RIYCFIRADNEEIAWYKLXTNLND-YFS--EE 123
Query: 190 EVPHFRSKISVVTGDVSLPGLGLSAADRAVLRRNVTVVFH-GAATVRFDENIKVAIAINI 248
V S I V+ GD D VL N + H GA T F ++ + +N+
Sbjct: 124 TVEXXLSNIEVIVGD-------FECXDDVVLPENXDTIIHAGARTDHFGDDDEFE-KVNV 175
Query: 249 FGSFVHVSTAYTHCPR 264
G+ + A H R
Sbjct: 176 QGTVDVIRLAQQHHAR 191
>pdb|1RKX|A Chain A, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|B Chain B, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|C Chain C, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|D Chain D, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
Length = 357
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 123 DREFYRGASVFVTGGTGFMGKTLT 146
+ F++G VFVTG TGF G L+
Sbjct: 3 NNSFWQGKRVFVTGHTGFKGGWLS 26
>pdb|4FIQ|A Chain A, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus Horikoshii
pdb|4FIQ|B Chain B, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus Horikoshii
pdb|4FIQ|C Chain C, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus Horikoshii
pdb|4FIQ|D Chain D, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus Horikoshii
pdb|4FIQ|E Chain E, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus Horikoshii
pdb|4FIQ|F Chain F, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus Horikoshii
pdb|4FIR|A Chain A, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus
pdb|4FIR|B Chain B, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus
pdb|4FIR|C Chain C, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus
pdb|4FIR|D Chain D, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus
pdb|4FIR|E Chain E, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus
pdb|4FIR|F Chain F, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs
From Pyrococcus
Length = 335
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 21 APGAPKLEMSEIVTAQYPIDPFELLGENSFGKPRVVPPDEVGSPIQEFYRGASVFVTGGT 80
A G ++ SE++T P DPF + + F P V +G ++ + GA++ T G
Sbjct: 101 ALGVDMIDESEVLT---PADPFFHIYKKKFTAPFVCGARNLGEAVRRIWEGAAMIRTKGE 157
Query: 81 GFMGKTL 87
G +
Sbjct: 158 AGTGNII 164
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 74 VFVTGGTGFMGKTLTEKLL 92
+ +TGG GF+G LT+KL+
Sbjct: 8 ILITGGAGFVGSHLTDKLM 26
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 132 VFVTGGTGFMGKTLTEKLL 150
+ +TGG GF+G LT+KL+
Sbjct: 8 ILITGGAGFVGSHLTDKLM 26
>pdb|2YZR|A Chain A, Crystal Structure Of Pyridoxine Biosynthesis Protein From
Methanocaldococcus Jannaschii
pdb|2YZR|B Chain B, Crystal Structure Of Pyridoxine Biosynthesis Protein From
Methanocaldococcus Jannaschii
pdb|2YZR|C Chain C, Crystal Structure Of Pyridoxine Biosynthesis Protein From
Methanocaldococcus Jannaschii
Length = 330
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 68/164 (41%), Gaps = 31/164 (18%)
Query: 21 APGAPKLEMSEIVTAQYPIDPFELLGENSFGKPRVVPPDEVGSPIQEFYRGASVFVTGGT 80
A G ++ SE++T DPF + + F P V +G ++ + GA++ T G
Sbjct: 94 AIGVDMIDESEVLTQA---DPFFHIYKKKFNVPFVCGARNLGEAVRRIWEGAAMIRTKGE 150
Query: 81 GFMGKTLTEKLLRACPHLERVYLLVRPKKGKTVSERLDEL--FEDREFYRGASVFVTGGT 138
G ++ A H+ + ++E + +L D E Y G + F
Sbjct: 151 AGTG-----NIVEAVRHM------------RLMNEAIAQLQRMTDEEVY-GVAKFYANRY 192
Query: 139 GFMGKTLTEKLLRACPHLER--VYLLVRPKKGKTVSERLDELFE 180
+ KT+ E + LE +Y +G T++E +D L+E
Sbjct: 193 AELAKTVREGMGLPATVLENEPIY------EGFTLAEIIDGLYE 230
>pdb|1DL5|A Chain A, Protein-L-Isoaspartate O-Methyltransferase
pdb|1DL5|B Chain B, Protein-L-Isoaspartate O-Methyltransferase
Length = 317
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 241 KVAIAINIFGSFVHVSTAYTHCPRQEIDEVFYPPPYDYKDFMELVMSRSDDNLEEFS 297
K+ + +G H++ A+ PR+E YP Y Y+D +V+ DD EE+S
Sbjct: 4 KLFWILKKYGVSDHIAKAFLEIPREEFLTKSYPLSYVYED---IVLVSYDDG-EEYS 56
>pdb|1CLC|A Chain A, Three-Dimensional Structure Of Endoglucanase D At 1.9
Angstroms Resolution
Length = 639
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 219 VLRRNVTVVFHGAATVRFDENIKVAIAINIFGSFVHVSTAYTHCP 263
V++ + T+V+ G AT FD + K + I F S T Y P
Sbjct: 70 VVKEDGTIVYTGTATSMFDNDTKETVYIADFSSVNEEGTYYLAVP 114
>pdb|1XTZ|A Chain A, Crystal Structure Of The S. Cerevisiae
D-Ribose-5-Phosphate Isomerase: Comparison With The
Archeal And Bacterial Enzymes
Length = 264
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 113 VSERLDELFEDREFYRGASVFVTGGTGFMGKTL 145
V+ER+ + D +FY AS F+ TGF + L
Sbjct: 53 VAERIGQYLHDPKFYEVASKFICIPTGFQSRNL 85
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 74 VFVTGGTGFMGKTLTEKL 91
+ +TGG GF+G LT+KL
Sbjct: 30 ILITGGAGFVGSHLTDKL 47
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 132 VFVTGGTGFMGKTLTEKL 149
+ +TGG GF+G LT+KL
Sbjct: 30 ILITGGAGFVGSHLTDKL 47
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,083,338
Number of Sequences: 62578
Number of extensions: 383292
Number of successful extensions: 1223
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1209
Number of HSP's gapped (non-prelim): 23
length of query: 298
length of database: 14,973,337
effective HSP length: 98
effective length of query: 200
effective length of database: 8,840,693
effective search space: 1768138600
effective search space used: 1768138600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)