RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14522
(298 letters)
>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif,
rossmann fold, short chain dehydrogenase/REDU family,
reductase; 2.30A {Mycobacterium tuberculosis}
Length = 478
Score = 139 bits (351), Expect = 5e-38
Identities = 42/171 (24%), Positives = 63/171 (36%), Gaps = 21/171 (12%)
Query: 128 RGASVFVTGGTGFMGKTLTEKLLRACPHLERVYLLVRPKKGKTVSERLDELFEDRLFSRL 187
+V +TG TGF+G+ L +LLR R+ LVR + + RL++ F+ L
Sbjct: 72 ELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELL 131
Query: 188 KAEVPHFRSKISVVTGDVSLPGLGLSAADRAVLRRNVTVVFHGAATVRFDENIKVAIAIN 247
+ ++ VV GD S P LGL L V ++ AA V + N
Sbjct: 132 RHFKELAADRLEVVAGDKSEPDLGLDQPMWRRLAETVDLIVDSAAMVNAFPYHE-LFGPN 190
Query: 248 IFG--------------SFVHVSTAYTHCPRQ------EIDEVFYPPPYDY 278
+ G F +VSTA + + D P
Sbjct: 191 VAGTAELIRIALTTKLKPFTYVSTADVGAAIEPSAFTEDADIRVISPTRTV 241
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 61.8 bits (149), Expect = 8e-11
Identities = 42/335 (12%), Positives = 89/335 (26%), Gaps = 108/335 (32%)
Query: 29 MSEIVTAQYPIDP------FELLGENSFGKPRVVPPDEVGSP---------IQEFYRGAS 73
MS I P + + + +V V + E +
Sbjct: 95 MSPI--KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152
Query: 74 VFVTGGTGFMGKT-LTEKLLRACPHLERVYLLVRPKKGKTVSERLDELFEDREFYRGASV 132
V + G G GKT + + S ++ + + F+
Sbjct: 153 VLIDGVLGS-GKTWVALDVCL--------------------SYKVQCKMDFKIFW----- 186
Query: 133 FVTGGTGFMGKTLTEKLLRACPHLERVYLLVRPKKGKTVSERLDELFEDRLFSRLKAEVP 192
+ +T+ E L + ++ + R + R+ + + L RL P
Sbjct: 187 -LNLKNCNSPETVLEMLQKLLYQIDPNW-TSRSDHSSNIKLRIHSI-QAEL-RRLLKSKP 242
Query: 193 H--------------------FRSKISVVTGDVSLPGLGLSAADR--AVLRRNVTVVFHG 230
+ KI + T + D A ++++ H
Sbjct: 243 YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV-------TDFLSAATTTHISLD-HH 294
Query: 231 AATVRFDE---------NIKVA-----------IAINIFGSFVHVSTA------YTHCPR 264
+ T+ DE + + ++I + A + +C +
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354
Query: 265 -QEIDEVFYP--PPYDYKD-FMELVMSRSDDNLEE 295
I E P +Y+ F L + ++
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT 389
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A
{Pseudomonas aeruginosa}
Length = 342
Score = 56.9 bits (138), Expect = 1e-09
Identities = 22/167 (13%), Positives = 40/167 (23%), Gaps = 54/167 (32%)
Query: 132 VFVTGGTGFMGKTLTEKLLRACPHLERVYLLVRPKKGKTVSERLDELFEDRLFSRLKAEV 191
V G TG +G + A + L+ RP S ++ L
Sbjct: 16 YAVLGATGLLGHHAARAIRAAG---HDLVLIHRP------SSQIQRLAYLE--------- 57
Query: 192 PHFRSKISVVTGDVSLPGLGLSAADRAVLRR---NVTVVFHGAATVRFD-ENIKVAIAIN 247
++ D A L R + V A + +A
Sbjct: 58 ------PECRVAEML---------DHAGLERALRGLDGVIFSAGYYPSRPRRWQEEVASA 102
Query: 248 IFGS--------------FVHVST--AYTHCPRQE-IDEVFYPPPYD 277
+ + ++V + A P+ E +
Sbjct: 103 LGQTNPFYAACLQARVPRILYVGSAYAMPRHPQGLPGHEGLFYDSLP 149
Score = 40.4 bits (95), Expect = 4e-04
Identities = 13/62 (20%), Positives = 18/62 (29%), Gaps = 8/62 (12%)
Query: 74 VFVTGGTGFMGKTLTEKLLRACPHLERVYLLVRPKKGKTVSERLD-ELFE----DREFYR 128
V G TG +G + A + L+ RP L+ E D
Sbjct: 16 YAVLGATGLLGHHAARAIRAAG---HDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLE 72
Query: 129 GA 130
A
Sbjct: 73 RA 74
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.1 bits (127), Expect = 6e-08
Identities = 66/339 (19%), Positives = 110/339 (32%), Gaps = 93/339 (27%)
Query: 4 DLHKIAVKLEQDVLSQGAPGAPKLEMSEIVTAQYPIDPFELLGENSFGK--PRVVPPDEV 61
IA +L Q+ ++ P + P P EL+G+ F +V P +V
Sbjct: 25 ASFFIASQL-QEQFNKILPEPTE----GFAADDEPTTPAELVGK--FLGYVSSLVEPSKV 77
Query: 62 GSP-------IQEF---Y-RGASV--FVTGGTGFMGKTLTEK--LLRACPHLERVYLLVR 106
G + EF Y G + TL + L++ Y+ R
Sbjct: 78 GQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKN-------YITAR 130
Query: 107 PKKGKTVSERLD-ELFE-----DREFYRGASVFVTGGTGFMGKTLTEKLLRACPHLERVY 160
+ ++ + LF + + ++F GG G E LR L + Y
Sbjct: 131 IMAKRPFDKKSNSALFRAVGEGNAQLV---AIF--GGQGNTDDYFEE--LR---DLYQTY 180
Query: 161 -LLVRPKKGKTVSERLDELFEDRLFSRLKAEVPHFRSKISVV--------TGD------- 204
+LV + + E + + + L AE F ++++ T D
Sbjct: 181 HVLVGD-----LIKFSAETLSELIRTTLDAE-KVFTQGLNILEWLENPSNTPDKDYLLSI 234
Query: 205 -VSLPGLGL-SAADRAVLRR-------NVTVVFHGAATVRFDENIKVAIAINIFGS---- 251
+S P +G+ A V + + GA + + A+AI S
Sbjct: 235 PISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGH--SQGLVTAVAIAETDSWESF 292
Query: 252 FVHVSTAYT-------HCPRQEIDEVFYPPPYDYKDFME 283
FV V A T C E PP +D +E
Sbjct: 293 FVSVRKAITVLFFIGVRC--YEAYPNTSLPPSILEDSLE 329
Score = 36.2 bits (83), Expect = 0.015
Identities = 33/210 (15%), Positives = 60/210 (28%), Gaps = 70/210 (33%)
Query: 111 KTVSERLDELFEDREFYRGASVFVTGGTGFMG----------KTLTEKLLRAC-PHLERV 159
K + E + D E A + F+G +++L C E
Sbjct: 39 KILPEPTEGFAADDEPTTPAELVGK----FLGYVSSLVEPSKVGQFDQVLNLCLTEFENC 94
Query: 160 YLLVRPKKGK---TVSERLDELFEDRLFSR---LKAEVPHFRSKISVVTGDVSLPGLGLS 213
YL +G ++ +L + + L +K + ++I S
Sbjct: 95 YL-----EGNDIHALAAKLLQENDTTLVKTKELIKN---YITARI---MAKRPFDKKSNS 143
Query: 214 AADRAVLRRNVTV--VF--HGAATVRFDENIKVAIAINIFGSFVHVSTAYTHCPRQEIDE 269
A RAV N + +F G F+E +++
Sbjct: 144 ALFRAVGEGNAQLVAIFGGQGNTDDYFEE-------------------------LRDL-- 176
Query: 270 VFYPPPYD-YKDFMELVMSRSDDNLEEFSR 298
Y Y + ++ S + L E R
Sbjct: 177 ------YQTYHVLVGDLIKFSAETLSELIR 200
>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3-
hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A
{Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*
Length = 317
Score = 44.6 bits (106), Expect = 2e-05
Identities = 27/163 (16%), Positives = 51/163 (31%), Gaps = 50/163 (30%)
Query: 132 VFVTGGTGFMGKTLTEKLLRACPHLERVYLLVRPKKGKTVSERLDELFEDRLFSRLKAEV 191
+ VTG +G +G L L + + +
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRD------------------------ 37
Query: 192 PHFRSKISVVTGDVSLPGLGLSAADRAVLRRNVTVVFHGAA--TVRFDENIKVAIAINIF 249
I +T DVS DRAV + ++ +FH A + + +++ +A +N+
Sbjct: 38 ---TGGIKFITLDVSNR----DEIDRAVEKYSIDAIFHLAGILSAKGEKDPALAYKVNMN 90
Query: 250 GS--------------FVHVSTA---YTHCPRQEIDEVFYPPP 275
G+ V ST P+ ++ + P
Sbjct: 91 GTYNILEAAKQHRVEKVVIPSTIGVFGPETPKNKVPSITITRP 133
Score = 33.8 bits (78), Expect = 0.050
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 74 VFVTGGTGFMGKTLTEKLLRACPHLERVYL-LVRPKKGKTVSERLD 118
+ VTG +G +G L L + +V+ G LD
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTGGIKFITLD 47
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 43.3 bits (102), Expect = 4e-05
Identities = 26/153 (16%), Positives = 53/153 (34%), Gaps = 28/153 (18%)
Query: 131 SVFVTGGTGFMGKTLTEKLLRACPHLERVYLLVRPKKGKTVSERLDELFEDRLFSRLKAE 190
+ + G TG++G+ + + L +LLVR + SE+ L +
Sbjct: 6 RILLIGATGYIGRHVAKASLDLGH---PTFLLVRESTASSNSEKAQLLESFK-------- 54
Query: 191 VPHFRSKISVVTGDVSLPGLGLSAADRAVLR---RNVTVVFHGAATVRFDENIKVAIAIN 247
S ++V G + D A L +NV VV +++ + + + AI
Sbjct: 55 ----ASGANIVHGSID---------DHASLVEAVKNVDVVISTVGSLQIESQVNIIKAIK 101
Query: 248 IFGSFVHVSTA-YTHCPRQEIDEVFYPPPYDYK 279
G+ + + + ++ K
Sbjct: 102 EVGTVKRFFPSEFGNDVDNVHAVEPAKSVFEVK 134
Score = 39.9 bits (93), Expect = 5e-04
Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 73 SVFVTGGTGFMGKTLTEKLLRACPHLERVYLLVRPKKGKTVSERLDELFEDREFYRGASV 132
+ + G TG++G+ + + L +LLVR + SE+ L + GA++
Sbjct: 6 RILLIGATGYIGRHVAKASLDLGH---PTFLLVRESTASSNSEKAQLLESFKA--SGANI 60
Query: 133 FV 134
Sbjct: 61 VH 62
>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia
pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*
Length = 357
Score = 41.8 bits (98), Expect = 1e-04
Identities = 28/134 (20%), Positives = 42/134 (31%), Gaps = 30/134 (22%)
Query: 123 DREFYRGASVFVTGGTGFMGKTLTEKLLR--ACPHLERVYLLVRPKKGKTVSERLDELFE 180
+ F++G VFVTG TGF G L+ L A V
Sbjct: 3 NNSFWQGKRVFVTGHTGFKGGWLSLWLQTMGA-----TVKGYSLTAPTV----------- 46
Query: 181 DRLFSRLKAEVPHFRSKISVVTGDVSLPGLGLSAADRAVLRRNVTVVFHGAA--TVRFD- 237
LF + + GD+ + ++ +VFH AA VR
Sbjct: 47 PSLFETAR-----VADGMQSEIGDIR----DQNKLLESIREFQPEIVFHMAAQPLVRLSY 97
Query: 238 ENIKVAIAINIFGS 251
+ N+ G+
Sbjct: 98 SEPVETYSTNVMGT 111
Score = 37.1 bits (86), Expect = 0.004
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 66 QEFYRGASVFVTGGTGFMGKTLTEKLLR 93
F++G VFVTG TGF G L+ L
Sbjct: 4 NSFWQGKRVFVTGHTGFKGGWLSLWLQT 31
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain
dehydrogenase reductase, oxidoreductase; HET: NMN AMP;
1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB:
1ujm_A* 1zze_A
Length = 342
Score = 40.7 bits (96), Expect = 3e-04
Identities = 31/127 (24%), Positives = 43/127 (33%), Gaps = 34/127 (26%)
Query: 128 RGASVFVTGGTGFMGKTLTEKLLRACPHLERVYLLVR-----PKKGKTVSERLDELFEDR 182
G+ V VTG GF+ + E+L LE Y VR K + +R D + R
Sbjct: 10 EGSLVLVTGANGFVASHVVEQL------LEHGY-KVRGTARSASKLANLQKRWDAKYPGR 62
Query: 183 LFSRLKAEVPHFRSKISVVTGDVSLPGLGLSAADRAVLRRNVTVVFHGAATVRFDENIKV 242
A V D+ G A D + + V H A+ V F
Sbjct: 63 F---ETAVVE-----------DMLKQG----AYDEVI--KGAAGVAHIASVVSFSNKYDE 102
Query: 243 AI--AIN 247
+ AI
Sbjct: 103 VVTPAIG 109
Score = 31.1 bits (71), Expect = 0.38
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 12/60 (20%)
Query: 70 RGASVFVTGGTGFMGKTLTEKLLRACPHLERVYLLVR-----PKKGKTVSERLDELFEDR 124
G+ V VTG GF+ + E+L LE Y VR K + +R D + R
Sbjct: 10 EGSLVLVTGANGFVASHVVEQL------LEHGY-KVRGTARSASKLANLQKRWDAKYPGR 62
>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium
tumefa structural genomics, PSI-2, protein structure
initiative; 1.85A {Agrobacterium tumefaciens}
Length = 342
Score = 40.4 bits (95), Expect = 4e-04
Identities = 22/135 (16%), Positives = 46/135 (34%), Gaps = 32/135 (23%)
Query: 124 REFYRGASVFVTGGTGFMGKTLTEKLLRA----CPHLERVYLLVRPKKGKTVSERLDELF 179
+++G + + G G +G+ LT++L++ +E+ L+
Sbjct: 9 NLYFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLI----------------- 51
Query: 180 EDRLFSRLKAEVPHFRSKISVVTGDVSLPGLGLSAADRAVLRRNVTVVFHGAA--TVRFD 237
D A + D+S P ++ V+FH AA + +
Sbjct: 52 -DVFQPEAPAGFSG---AVDARAADLSAP-----GEAEKLVEARPDVIFHLAAIVSGEAE 102
Query: 238 ENIKVAIAINIFGSF 252
+ IN+ G+
Sbjct: 103 LDFDKGYRINLDGTR 117
Score = 30.8 bits (70), Expect = 0.54
Identities = 7/27 (25%), Positives = 18/27 (66%)
Query: 68 FYRGASVFVTGGTGFMGKTLTEKLLRA 94
+++G + + G G +G+ LT++L++
Sbjct: 11 YFQGMHIAIIGAAGMVGRKLTQRLVKD 37
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm
2008} PDB: 3r14_A*
Length = 221
Score = 39.6 bits (92), Expect = 5e-04
Identities = 31/152 (20%), Positives = 49/152 (32%), Gaps = 29/152 (19%)
Query: 132 VFVTGGTGFMGKTLTEKLLRACPHLERVYLLVRPKKGKTVSERLDELFEDRLFSRLKAEV 191
+ + G G + + LT LL + L R K + E +D
Sbjct: 8 ITILGAAGQIAQXLTATLLTYTDM--HITLYGRQLKTRIPPEIIDH-------------- 51
Query: 192 PHFRSKISVVTGDVSLPGLGLSAADRAVLRRNVTVVFHGAA-TVRFDENIKVAIAINIFG 250
+++V+ G P ++AV N VVF GA + +I A++
Sbjct: 52 ----ERVTVIEGSFQNP----GXLEQAV--TNAEVVFVGAMESGSDMASIVKALSRXNIR 101
Query: 251 SFVHVSTA--YTHCPRQEIDEVFYPPPYDYKD 280
+ VS A P F P Y
Sbjct: 102 RVIGVSMAGLSGEFPVALEKWTFDNLPISYVQ 133
Score = 35.0 bits (80), Expect = 0.019
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 74 VFVTGGTGFMGKTLTEKLLRACPHLERVYLLVRPKKGKTVSERLD 118
+ + G G + + LT LL + L R K + E +D
Sbjct: 8 ITILGAAGQIAQXLTATLLTYTDM--HITLYGRQLKTRIPPEIID 50
>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NADH complex, sugar binding protein; HET: NAI;
1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A*
2q1u_A*
Length = 377
Score = 40.0 bits (94), Expect = 5e-04
Identities = 28/182 (15%), Positives = 46/182 (25%), Gaps = 61/182 (33%)
Query: 123 DREFYRGASVFVTGGTGFMGKTLTEKLLRACPHLERVYLLVRPKKGKTVSERLDELFEDR 182
+ +V V GG GF+G L ++LL + +V+++ D
Sbjct: 26 NASKLANTNVMVVGGAGFVGSNLVKRLLELGVN--QVHVV------------------DN 65
Query: 183 LFSRLKAEVPHFRSKISVVTGDVSLPGLGLSAADRAVLRR---NVTVVFHGAA---TVRF 236
L S K VP + + D A+L VFH A
Sbjct: 66 LLSAEKINVPD-HPAVRFSETSI---------TDDALLASLQDEYDYVFHLATYHGNQSS 115
Query: 237 DENIKVAIAINIFGS---------------FVHVSTAYTHCPRQEIDEVFYPPPYDYKDF 281
+ N + V+ + +D
Sbjct: 116 IHDPLADHENNTLTTLKLYERLKHFKRLKKVVYSAA----------GCSIAEKTFDDAKA 165
Query: 282 ME 283
E
Sbjct: 166 TE 167
Score = 31.1 bits (71), Expect = 0.36
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 69 YRGASVFVTGGTGFMGKTLTEKLLRACPH 97
+V V GG GF+G L ++LL +
Sbjct: 30 LANTNVMVVGGAGFVGSNLVKRLLELGVN 58
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
HET: MNB; 2.30A {Shigella flexneri 2A}
Length = 236
Score = 39.8 bits (93), Expect = 5e-04
Identities = 18/159 (11%), Positives = 38/159 (23%), Gaps = 36/159 (22%)
Query: 132 VFVTGGTGFMGKTLTEKLLRACPHLERVYLLVRPKKGKTVSERLDELFEDRLFSRLKAEV 191
V + G G + + + +L + L R ++ + +
Sbjct: 26 VLILGAGGQIARHVINQLADKQTI--KQTLFARQP------AKIHKPYPTN--------- 68
Query: 192 PHFRSKISVVTGDVSLPGLGLSAADRAVLRRNVTVVFHGAATVRFDENIKVAIAI---NI 248
++ GDV A +A+ + +V+ D IA
Sbjct: 69 ------SQIIMGDVLNHA----ALKQAM--QGQDIVYANLTGEDLDIQANSVIAAMKACD 116
Query: 249 FGSFVHVSTAYT----HCPRQEIDEVFYPPPYDYKDFME 283
+ V + E + P
Sbjct: 117 VKRLIFVLSLGIYDEVPGKFVEWNNAVIGEPLKPFRRAA 155
Score = 32.5 bits (74), Expect = 0.14
Identities = 6/51 (11%), Positives = 16/51 (31%), Gaps = 8/51 (15%)
Query: 74 VFVTGGTGFMGKTLTEKLLRACPHLERVYLLVRPKKGKTVSERLDELFEDR 124
V + G G + + + +L + L R ++ + +
Sbjct: 26 VLILGAGGQIARHVINQLADKQTI--KQTLFARQP------AKIHKPYPTN 68
>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura
genomics, PSI, protein structure initiative; 1.50A
{Pseudomonas aeruginosa} SCOP: c.2.1.2
Length = 215
Score = 38.9 bits (91), Expect = 9e-04
Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 8/70 (11%)
Query: 132 VFVTGGTGFMGKTLTEKLLRACPHLERVYLLVRPKKGKTVSERLDELFEDRLFSRLKAEV 191
V + G TG G+ L +++L P L +V R + RLD + L
Sbjct: 8 VLLAGATGLTGEHLLDRILSE-PTLAKVIAPARKALAE--HPRLDNPVGP--LAELLP-- 60
Query: 192 PHFRSKISVV 201
I
Sbjct: 61 -QLDGSIDTA 69
Score = 38.1 bits (89), Expect = 0.002
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 74 VFVTGGTGFMGKTLTEKLLRACPHLERVYLLVRPKKGKTVSERLDELFED 123
V + G TG G+ L +++L P L +V R + RLD
Sbjct: 8 VLLAGATGLTGEHLLDRILSE-PTLAKVIAPARKALAE--HPRLDNPVGP 54
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 38.9 bits (91), Expect = 0.001
Identities = 26/158 (16%), Positives = 45/158 (28%), Gaps = 57/158 (36%)
Query: 132 VFVTGGTGFMGKTLTEKLLRACPHLERVYLLVRPKKGKTVSERLDELFEDRLFSRLKAEV 191
+ VTG G +G+ + E+L L RL +L S L
Sbjct: 6 LLVTGAAGQLGRVMRERLAPMAEIL-----------------RLADL------SPLDPAG 42
Query: 192 PHFRSKISVVTGDVSLPGLGLSAADRAVLRR---NVTVVFHGAATVRFDENIKVAIAINI 248
P+ V D+ AD + + H + ++ + + NI
Sbjct: 43 PNEE----CVQCDL---------ADANAVNAMVAGCDGIVHLGG-ISVEKPFEQILQGNI 88
Query: 249 FGS--------------FVHVST--AYTHCPRQE-IDE 269
G V S+ + P+ E +
Sbjct: 89 IGLYNLYEAARAHGQPRIVFASSNHTIGYYPQTERLGP 126
Score = 32.3 bits (74), Expect = 0.13
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 11/56 (19%)
Query: 74 VFVTGGTGFMGKTLTEKLLRACPHLERVYLLVRPKKGKTVSERLDELFEDREFYRG 129
+ VTG G +G+ + E+L E + L LD + E +
Sbjct: 6 LLVTGAAGQLGRVMRERLAPMA---EILRLADL--------SPLDPAGPNEECVQC 50
>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription;
HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB:
2fmu_A
Length = 242
Score = 39.0 bits (91), Expect = 0.001
Identities = 25/135 (18%), Positives = 43/135 (31%), Gaps = 22/135 (16%)
Query: 131 SVFVTGGTGFMGKTLTEKLLRACPHLERVYLLVR--PKKGKTVSERLDELFEDRLFSRLK 188
SVF+ G +G G+ L +++L +V L+ R + + +++ D F +L
Sbjct: 20 SVFILGASGETGRVLLKEILEQ-GLFSKVTLIGRRKLTFDEEAYKNVNQEVVD--FEKLD 76
Query: 189 AEVPHFRSKISVVTGDVSLPGLGLSAADRAVLRRNVTVVFHGAATVRFDENIKVAIAINI 248
F+ G A R V D +K A
Sbjct: 77 DYASAFQGHDVG----FCCLGTTRGKAGAEGFVR-----------VDRDYVLKSAELAKA 121
Query: 249 FG--SFVHVSTAYTH 261
G F +S+
Sbjct: 122 GGCKHFNLLSSKGAD 136
Score = 37.1 bits (86), Expect = 0.004
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 73 SVFVTGGTGFMGKTLTEKLLRACPHLERVYLLVR 106
SVF+ G +G G+ L +++L +V L+ R
Sbjct: 20 SVFILGASGETGRVLLKEILEQ-GLFSKVTLIGR 52
>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad,
SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A
{Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A*
2gna_A*
Length = 344
Score = 38.4 bits (90), Expect = 0.002
Identities = 22/112 (19%), Positives = 36/112 (32%), Gaps = 30/112 (26%)
Query: 125 EFYRGASVFVTGGTGFMGKTLTEKLLRACPHLERVYLLVRPKKGKTVSERLDELFEDRLF 184
++ +TGGTG GK K+L + +++ + R DEL + +
Sbjct: 17 NMLDNQTILITGGTGSFGKCFVRKVLDT-TNAKKIIVYSR-----------DELKQSEMA 64
Query: 185 SRLKAEVPHFRSKISVVTGDVSLPGLGLSAADRAVLRR---NVTVVFHGAAT 233
++ GDV D L V + H AA
Sbjct: 65 MEFNDP------RMRFFIGDVR---------DLERLNYALEGVDICIHAAAL 101
Score = 35.3 bits (82), Expect = 0.016
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 65 IQEFYRGASVFVTGGTGFMGKTLTEKLL 92
Q ++ +TGGTG GK K+L
Sbjct: 15 HQNMLDNQTILITGGTGSFGKCFVRKVL 42
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent
epimerase/dehydratase, LMR162, NESG, structural
genomics, PSI-2; 2.73A {Listeria monocytogenes}
Length = 221
Score = 37.3 bits (86), Expect = 0.003
Identities = 16/167 (9%), Positives = 43/167 (25%), Gaps = 25/167 (14%)
Query: 132 VFVTGGTGFMGKTLTEKLLRACPHLERVYLLVRPKKGKTVSERLDELFEDRLFSRLKAEV 191
+ + G TG G + E+ G V R ++
Sbjct: 3 IGIIGATGRAGSRILEEAKNR---------------GHEV----------TAIVRNAGKI 37
Query: 192 PHFRSKISVVTGDVSLPGLGLSAADRAVLRRNVTVVFHGAATVRFDENIKVAIAINIFGS 251
I+++ D+ L + V+ V +++ + +
Sbjct: 38 TQTHKDINILQKDIFDLTLSDLSDQNVVVDAYGISPDEAEKHVTSLDHLISVLNGTVSPR 97
Query: 252 FVHVSTAYTHCPRQEIDEVFYPPPYDYKDFMELVMSRSDDNLEEFSR 298
+ V A + ++ + + + +++ S
Sbjct: 98 LLVVGGAASLQIDEDGNTLLESKGLREAPYYPTARAQAKQLEHLKSH 144
Score = 31.5 bits (71), Expect = 0.23
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Query: 74 VFVTGGTGFMGKTLTEKLLRACPHLERVYLLVR-PKKGKTVSERLD 118
+ + G TG G + E+ H V +VR K + ++
Sbjct: 3 IGIIGATGRAGSRILEEAKNR-GH--EVTAIVRNAGKITQTHKDIN 45
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A
{Vibrio fischeri} PDB: 3pvz_A*
Length = 399
Score = 37.4 bits (87), Expect = 0.004
Identities = 21/182 (11%), Positives = 57/182 (31%), Gaps = 53/182 (29%)
Query: 103 LLVRPKKGKTVSERLDELFEDREFYRGASVFVTGGTGFMGKTLTEKLLRACPHLERVYLL 162
L+ R + +E E + + V GG G +G+ +T+++ + P ++++++
Sbjct: 10 LIGRDTELFHQDINANEK-ELQSVVSQSRFLVLGGAGSIGQAVTKEIFKRNP--QKLHVV 66
Query: 163 VRPKKGKTVSERLDELFEDRLFS---RLKAEVPHFRSKISVVTGDVSLPGLGLSAADRAV 219
++ E+ + +++ + D+
Sbjct: 67 --------------DISENNMVELVRDIRSSFGYINGDFQTFALDIG---------SIEY 103
Query: 220 LRR-----NVTVVFHGAA-----TVRFDENIKVAIAINIFGS--------------FVHV 255
V + +A + + + I +N+F + + V
Sbjct: 104 DAFIKADGQYDYVLNLSALKHVRSEKDPFTLMRMIDVNVFNTDKTIQQSIDAGAKKYFCV 163
Query: 256 ST 257
ST
Sbjct: 164 ST 165
Score = 30.1 bits (68), Expect = 0.99
Identities = 11/53 (20%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 44 LLGENSFGKPRVVPPDEVGSPIQEFYRGASVFVTGGTGFMGKTLTEKLLRACP 96
L+G ++ + + +E +Q + V GG G +G+ +T+++ + P
Sbjct: 10 LIGRDTELFHQDINANE--KELQSVVSQSRFLVLGGAGSIGQAVTKEIFKRNP 60
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse,
oxidoreductase; 2.10A {Chromohalobacter salexigens}
Length = 267
Score = 37.3 bits (87), Expect = 0.004
Identities = 18/124 (14%), Positives = 30/124 (24%), Gaps = 40/124 (32%)
Query: 132 VFVTGGTGFMGKTLTEKLLRACPHLERVYLLVRPKKGKTVSERLDELFEDRLFSRLKAEV 191
+ VTG G +G + L V L D +
Sbjct: 5 LLVTGAAGGVGSAIRPHLGTLA---HEVRLS------------------DIVDLGAAEAH 43
Query: 192 PHFRSKISVVTGDVSLPGLGLSAADRAVLRR---NVTVVFHGAATVRFDENIKVAIAINI 248
V D+ AD + + + H V + + NI
Sbjct: 44 EEI------VACDL---------ADAQAVHDLVKDCDGIIHLGG-VSVERPWNDILQANI 87
Query: 249 FGSF 252
G++
Sbjct: 88 IGAY 91
Score = 31.9 bits (73), Expect = 0.18
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 74 VFVTGGTGFMGKTLTEKLLRAC 95
+ VTG G +G + L
Sbjct: 5 LLVTGAAGGVGSAIRPHLGTLA 26
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation,
flavin reductase, diaphorase, green HAEM binding
protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2
PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Length = 206
Score = 36.5 bits (85), Expect = 0.004
Identities = 31/169 (18%), Positives = 48/169 (28%), Gaps = 41/169 (24%)
Query: 132 VFVTGGTGFMGKTLTEKLLRACPHLERVYLLVRPKKGKTVSERLDELFEDRLFSRLKAEV 191
+ + G TG G T + ++A V +LVR S RL
Sbjct: 6 IAIFGATGQTGLTTLAQAVQAG---YEVTVLVRD------SSRLPSEGPRPA-------- 48
Query: 192 PHFRSKISVVTGDVSLPGLGLSAADRAVLRRNVTVVFH--------GAATVRFDENIKVA 243
VV GDV + D+ V V TV + +
Sbjct: 49 -------HVVVGDVLQA----ADVDKTV--AGQDAVIVLLGTRNDLSPTTVMSEGARNIV 95
Query: 244 IAINIFGS--FVHVSTAYTHCPRQEIDEVFYPPPYDYKDFMELVMSRSD 290
A+ G V ++A+ ++ D M V+ S
Sbjct: 96 AAMKAHGVDKVVACTSAFLLWDPTKVPPRLQ-AVTDDHIRMHKVLRESG 143
Score = 30.7 bits (70), Expect = 0.39
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Query: 74 VFVTGGTGFMGKTLTEKLLRACPHLERVYLLVR-PKKGKTVSERLDELFE 122
+ + G TG G T + ++A V +LVR + + R +
Sbjct: 6 IAIFGATGQTGLTTLAQAVQAG---YEVTVLVRDSSRLPSEGPRPAHVVV 52
>1xq6_A Unknown protein; structural genomics, protein structure initiative,
CESG, AT5G02240, NADP, center for eukaryotic structural
genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Length = 253
Score = 36.4 bits (84), Expect = 0.007
Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 7/57 (12%)
Query: 73 SVFVTGGTGFMGKTLTEKLLRACPHLERVYLLVRPKKGKTVSERLDELFEDREFYRG 129
+V VTG +G G+ + +KL LVR + +++ + + + G
Sbjct: 6 TVLVTGASGRTGQIVYKKLKEG-SDKFVAKGLVRSA------QGKEKIGGEADVFIG 55
Score = 35.2 bits (81), Expect = 0.014
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 131 SVFVTGGTGFMGKTLTEKLLRACPHLERVYLLVRPKKGKTVSERLDELFE 180
+V VTG +G G+ + +KL LVR +GK ++F
Sbjct: 6 TVLVTGASGRTGQIVYKKLKEG-SDKFVAKGLVRSAQGKEKIGGEADVFI 54
>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1,
oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium
frigidimaris}
Length = 312
Score = 36.5 bits (85), Expect = 0.008
Identities = 22/146 (15%), Positives = 48/146 (32%), Gaps = 38/146 (26%)
Query: 132 VFVTGGTGFMGKTLTEKLLRACPHLERVYL--LVRPKKGKTVSERLDELFEDRLFSRLKA 189
+ + G G +G LT+KL + E V + + ++ F +
Sbjct: 5 ILIIGACGQIGTELTQKLRKLY-GTENVIASDIRKLNT---------DVVNSGPFEVV-- 52
Query: 190 EVPHFRSKISVVTGDVSLPGLGLSAADRAVLRRNVTVVFHGAA--TVRFDENIKVAIAIN 247
+ + + V +T ++ AA + ++N A +N
Sbjct: 53 --------------NALDF----NQIEHLVEVHKITDIYLMAALLSATAEKNPAFAWDLN 94
Query: 248 IFGSFVHVSTAYTHCPRQEIDEVFYP 273
+ HV ++I ++F+P
Sbjct: 95 MNS-LFHVLNL---AKAKKIKKIFWP 116
Score = 30.3 bits (69), Expect = 0.66
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 74 VFVTGGTGFMGKTLTEKLLR 93
+ + G G +G LT+KL +
Sbjct: 5 ILIIGACGQIGTELTQKLRK 24
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase,
oxidoreductase, SDR, cardenolides, cardiac glycosides;
HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*
Length = 364
Score = 36.2 bits (83), Expect = 0.009
Identities = 27/136 (19%), Positives = 42/136 (30%), Gaps = 29/136 (21%)
Query: 131 SVFVTGGTGFMGKTLTEKLLRACPHLE--RVYLLVRPKKGKTVSERLDELFEDRLFSRLK 188
+ G TG +G +L E L A +VY + R R +
Sbjct: 3 VALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVAR---------------------RTR 41
Query: 189 AEVPHFRSKISVVTGDVSLPGLGLSAADRAVLRRNVTVVFHGAATVRFDENIKVAIAINI 248
+ I+ V D+S P A + +VT VF+ R E + N
Sbjct: 42 PAWHE-DNPINYVQCDISDPD-DSQAKLSPL--TDVTHVFYVTWANRSTE--QENCEANS 95
Query: 249 FGSFVHVSTAYTHCPR 264
+ +CP
Sbjct: 96 KMFRNVLDAVIPNCPN 111
Score = 32.8 bits (74), Expect = 0.11
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 73 SVFVTGGTGFMGKTLTEKLLRACPHLE--RVYLLVR 106
+ G TG +G +L E L A +VY + R
Sbjct: 3 VALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVAR 38
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain
dehydrogenase reductase, flavonoi oxidoreductase; HET:
NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Length = 346
Score = 35.8 bits (82), Expect = 0.012
Identities = 24/150 (16%), Positives = 48/150 (32%), Gaps = 22/150 (14%)
Query: 131 SVFVTGGTGFMGKTLTEKLLRACPHLERVYLLVRPKKGKTVSERLDELFEDRLFSRLKAE 190
V + G TGF+G+ + L A Y+L RP ++ + ED+
Sbjct: 12 RVLIAGATGFIGQFVATASLDAHRP---TYILARPGPRSPSKAKIFKALEDK-------- 60
Query: 191 VPHFRSKISVVTGDVSLPGLGLSAADRAVLRRNVTVVFHGAATVRFDENIKVAIAINIFG 250
+V G ++ A ++ + + +V + I + A+ G
Sbjct: 61 ------GAIIVYGLINEQ----EAMEKILKEHEIDIVVSTVGGESILDQIALVKAMKAVG 110
Query: 251 SFVHV-STAYTHCPRQEIDEVFYPPPYDYK 279
+ + + H + Y K
Sbjct: 111 TIKRFLPSEFGHDVNRADPVEPGLNMYREK 140
Score = 34.6 bits (79), Expect = 0.027
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 73 SVFVTGGTGFMGKTLTEKLLRACPHLERVYLLVRPKKGKTVSERLDELFEDR 124
V + G TGF+G+ + L A Y+L RP ++ + ED+
Sbjct: 12 RVLIAGATGFIGQFVATASLDAHRP---TYILARPGPRSPSKAKIFKALEDK 60
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C,
northeast structural genomics consortium, NESG, C
PSI-biology; 2.00A {Corynebacterium glutamicum}
Length = 516
Score = 35.4 bits (82), Expect = 0.017
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 74 VFVTGGTGFMGKTLTEKLLRACPHLERVYLLVR 106
V +TG G +G+ LT L+ H V LVR
Sbjct: 150 VAITGSRGLVGRALT-AQLQTGGH--EVIQLVR 179
Score = 35.4 bits (82), Expect = 0.017
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 132 VFVTGGTGFMGKTLTEKLLRACPHLERVYLLVR 164
V +TG G +G+ LT L+ H V LVR
Sbjct: 150 VAITGSRGLVGRALT-AQLQTGGH--EVIQLVR 179
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics,
APC7755, NADP, P protein structure initiative; HET: MSE
NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 35.0 bits (81), Expect = 0.019
Identities = 23/105 (21%), Positives = 33/105 (31%), Gaps = 23/105 (21%)
Query: 74 VFVTGGTGFMGKTLTEKLLRACPHLERVYLLVRPKKGKTVSERLDELFEDREFYRGASVF 133
V V G G + + L +L +VR + E+ EL E GAS
Sbjct: 24 VLVVGANGKVARYLLSELKNKG---HEPVAMVRNE------EQGPELRER-----GASDI 69
Query: 134 VTGGTGFMGKTLTEKLLRACPHLERVYLLV--RPKKGKTVSERLD 176
V L E A ++ V P G + +D
Sbjct: 70 VVA-------NLEEDFSHAFASIDAVVFAAGSGPHTGADKTILID 107
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD
UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A*
3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Length = 351
Score = 34.9 bits (81), Expect = 0.021
Identities = 30/133 (22%), Positives = 43/133 (32%), Gaps = 35/133 (26%)
Query: 132 VFVTGGTGFMGKTLTEKLLRACPHLERVYLLVRPKKGKTVSERLDEL---FEDRLFSRLK 188
+TG GF+G L EKLL K + V LD + L
Sbjct: 28 WLITGVAGFIGSNLLEKLL---------------KLNQVVIG-LDNFSTGHQYNLDEVKT 71
Query: 189 AEVPHFRSKISVVTGDVSLPGLGLSAADRAVLRR---NVTVVFHGAA--TVRFD-ENIKV 242
S+ + GD+ D + V V H AA +V +
Sbjct: 72 LVSTEQWSRFCFIEGDI---------RDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPIT 122
Query: 243 AIAINIFGSFVHV 255
A NI G F+++
Sbjct: 123 TNATNITG-FLNI 134
Score = 29.5 bits (67), Expect = 1.3
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 74 VFVTGGTGFMGKTLTEKLLR 93
+TG GF+G L EKLL+
Sbjct: 28 WLITGVAGFIGSNLLEKLLK 47
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK,
UDP, N-acetylglucosamine, N- acetylgalactosamine,
UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas
aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Length = 352
Score = 34.6 bits (80), Expect = 0.029
Identities = 27/130 (20%), Positives = 37/130 (28%), Gaps = 34/130 (26%)
Query: 132 VFVTGGTGFMGKTLTEKLLRACPHLERVYLLVRPKKGKTVSERLDEL---FEDRLFSRLK 188
+TG GF+G L E LL K + V LD + L
Sbjct: 30 WLITGVAGFIGSNLLETLL---------------KLDQKVVG-LDNFATGHQRNLDEVRS 73
Query: 189 AEVPHFRSKISVVTGDVSLPGLGLSAADRAVLRR---NVTVVFHGAA--TVRFD-ENIKV 242
S + GD+ + V V H AA +V +
Sbjct: 74 LVSEKQWSNFKFIQGDI---------RNLDDCNNACAGVDYVLHQAALGSVPRSINDPIT 124
Query: 243 AIAINIFGSF 252
+ A NI G
Sbjct: 125 SNATNIDGFL 134
Score = 29.5 bits (67), Expect = 1.2
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 74 VFVTGGTGFMGKTLTEKLLRA 94
+TG GF+G L E LL+
Sbjct: 30 WLITGVAGFIGSNLLETLLKL 50
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A
{Clarkia breweri}
Length = 321
Score = 34.5 bits (79), Expect = 0.032
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 5/62 (8%)
Query: 73 SVFVTGGTGFMGKTLTEKLLRACPHLERVYLLVRPKKGKTVSERLDELFEDREFYRGASV 132
+ + GGTG++GK + L ++ RP + + E R G ++
Sbjct: 6 KIIIYGGTGYIGKFMVRASLSFSHP---TFIYARPLTPDSTPSSVQLREEFRS--MGVTI 60
Query: 133 FV 134
Sbjct: 61 IE 62
Score = 33.4 bits (76), Expect = 0.073
Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 131 SVFVTGGTGFMGKTLTEKLLRACPHLERVYLLVRPKKGKTVSERLDELFE 180
+ + GGTG++GK + L ++ RP + + E
Sbjct: 6 KIIIYGGTGYIGKFMVRASLSFSHP---TFIYARPLTPDSTPSSVQLREE 52
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 34.5 bits (79), Expect = 0.034
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 73 SVFVTGGTGFMGKTLTEKLLRACPHLERVYLLVRPKKGKTVS 114
V + GGTG++GK + + Y+L RP+ +
Sbjct: 6 RVLIVGGTGYIGKRIVNASISLGHP---TYVLFRPEVVSNID 44
Score = 34.5 bits (79), Expect = 0.034
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 131 SVFVTGGTGFMGKTLTEKLLRACPHLERVYLLVRPKKGKTVS 172
V + GGTG++GK + + Y+L RP+ +
Sbjct: 6 RVLIVGGTGYIGKRIVNASISLGHP---TYVLFRPEVVSNID 44
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase;
1.60A {Medicago sativa}
Length = 307
Score = 34.1 bits (78), Expect = 0.042
Identities = 25/153 (16%), Positives = 54/153 (35%), Gaps = 27/153 (17%)
Query: 131 SVFVTGGTGFMGKTLTEKLLRACPHLERVYLLVRPKKGKTVSERLDELFEDRLFSRLKAE 190
+ + G TG +G+ + ++A + Y LVR E +EL ++ + L
Sbjct: 4 KILILGPTGAIGRHIVWASIKA-GN--PTYALVRKTITAANPETKEELIDN--YQSLGVI 58
Query: 191 VPHFRSKISVVTGDVSLPGLGLSAADRAVLR---RNVTVVFHGAATVRFDENIKVAIAIN 247
++ GD++ D L + V +V A + ++ +K+ AI
Sbjct: 59 ---------LLEGDIN---------DHETLVKAIKQVDIVICAAGRLLIEDQVKIIKAIK 100
Query: 248 IFGSFVHV-STAYTHCPRQEIDEVFYPPPYDYK 279
G+ + + + ++ K
Sbjct: 101 EAGNVKKFFPSEFGLDVDRHDAVEPVRQVFEEK 133
Score = 33.3 bits (76), Expect = 0.080
Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 73 SVFVTGGTGFMGKTLTEKLLRACPHLERVYLLVRPKKGKTVSERLDELFEDREFYRGASV 132
+ + G TG +G+ + ++A + Y LVR E +EL ++ + G +
Sbjct: 4 KILILGPTGAIGRHIVWASIKA-GN--PTYALVRKTITAANPETKEELIDNYQ-SLGVIL 59
Query: 133 FV 134
Sbjct: 60 LE 61
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase,
structural genomics, PSI-2, protein structure
initiative; HET: UDP; 2.95A {Bacillus cereus}
Length = 311
Score = 34.1 bits (79), Expect = 0.047
Identities = 26/141 (18%), Positives = 37/141 (26%), Gaps = 49/141 (34%)
Query: 132 VFVTGGTGFMGKTLTEKLLRACPHLERVYLLVRPKKGKTVSERLDELFEDRLFSRLKAEV 191
+ VTGGTGF+G+ + E + G T + R
Sbjct: 5 IAVTGGTGFLGQYVVESIK---------------NDGNTP--IIL----TRSIGNKAIND 43
Query: 192 PHFRSKISVVTGDVSLPGLGLSAADRAVLRRNVTVVFHGAATVRFDENIKVAIAINIFGS 251
+ D +L D +V V H AAT I N +
Sbjct: 44 YEY------RVSDYTL-------EDLINQLNDVDAVVHLAATRGSQGKIS-EFHDNEILT 89
Query: 252 --------------FVHVSTA 258
V+ ST
Sbjct: 90 QNLYDACYENNISNIVYASTI 110
Score = 29.4 bits (67), Expect = 1.2
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 74 VFVTGGTGFMGKTLTEKLLR 93
+ VTGGTGF+G+ + E +
Sbjct: 5 IAVTGGTGFLGQYVVESIKN 24
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370,
Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2;
2.00A {Bacteroides thetaiotaomicron}
Length = 227
Score = 33.5 bits (77), Expect = 0.047
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 74 VFVTGGTGFMGKTLTEKLLRACPHLERVYLLVR-PKKGKTVSERLD 118
+ + G +GF+G L + L V +VR P+K K +E L
Sbjct: 7 IVLIGASGFVGSALLNEALNR-GF--EVTAVVRHPEKIKIENEHLK 49
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, sugar binding protein; HET: NAD;
2.19A {Bordetella bronchiseptica}
Length = 333
Score = 33.8 bits (78), Expect = 0.062
Identities = 28/129 (21%), Positives = 45/129 (34%), Gaps = 37/129 (28%)
Query: 132 VFVTGGTGFMGKTLTEKLLRACPHLERVYLLVRPKKGKTVSERLDELFEDRLFSRLKAEV 191
VF+TG G +G + E LL ++G V +D R LK +
Sbjct: 24 VFITGICGQIGSHIAELLL---------------ERGDKVVG-IDNFATGRR-EHLK-DH 65
Query: 192 PHFRSKISVVTGDVSLPGLGLSAADRAVLRR-----NVTVVFHGAATVRFDENIKVAIAI 246
P+ V G + AD A++ + V H AA+ + ++
Sbjct: 66 PNLT----FVEGSI---------ADHALVNQLIGDLQPDAVVHTAASYKDPDDWYNDTLT 112
Query: 247 NIFGSFVHV 255
N G +V
Sbjct: 113 NCVG-GSNV 120
Score = 29.1 bits (66), Expect = 1.7
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 74 VFVTGGTGFMGKTLTEKLLRA 94
VF+TG G +G + E LL
Sbjct: 24 VFITGICGQIGSHIAELLLER 44
>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase,
epimerization, oxidoreductase; 1.88A {Streptomyces
venezuelae}
Length = 525
Score = 33.6 bits (77), Expect = 0.066
Identities = 24/123 (19%), Positives = 36/123 (29%), Gaps = 21/123 (17%)
Query: 122 EDREFYRGASVFVTGGTGFMGKTLTEKLLRACPHLERVYLLVRPKKGKTVSERLDELFED 181
+ +V VTG +L R + L G +E ED
Sbjct: 244 ASPWWQADGTVLVTGAEEPAAAEAARRLARD--GAGHLLLHTT-PSGSEGAEGTSGAAED 300
Query: 182 RLFSRLKAEVPHFRSKISVVTGDVSLPGLGLSAADRAVLRR---------NVTVVFHGAA 232
+ L AE+ + +VVT D+ D R ++ V H
Sbjct: 301 SGLAGLVAELADLGATATVVTCDL---------TDAEAAARLLAGVSDAHPLSAVLHLPP 351
Query: 233 TVR 235
TV
Sbjct: 352 TVD 354
Score = 29.4 bits (66), Expect = 1.7
Identities = 10/56 (17%), Positives = 16/56 (28%), Gaps = 4/56 (7%)
Query: 53 PRVV--PPDEVGSPIQEFYRGASVFVTGGTGFMGKTLTEKLLRACPHLERVYLLVR 106
R+V G+ + +V VTG +L R + L
Sbjct: 231 RRLVRASLPAHGTASPWWQADGTVLVTGAEEPAAAEAARRLARD--GAGHLLLHTT 284
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics,
PSI-2, protein structure initiative; 1.40A {Lactococcus
lactis subsp}
Length = 219
Score = 33.1 bits (76), Expect = 0.074
Identities = 18/98 (18%), Positives = 37/98 (37%), Gaps = 25/98 (25%)
Query: 74 VFVTGGTGFMGKTLTEKLLRACPHLERVYLLVR-PKKGKTVS-------------ERLDE 119
+F+ G TG +GK+L + L + ++Y R ++ + E + +
Sbjct: 3 IFIVGSTGRVGKSLLKSLSTT-DY--QIYAGARKVEQVPQYNNVKAVHFDVDWTPEEMAK 59
Query: 120 LFEDREFYRGASVFVTGGTGFMGKTL----TEKLLRAC 153
+ A + V+G G + KL++A
Sbjct: 60 QLHGMD----AIINVSGSGGKSLLKVDLYGAVKLMQAA 93
>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase
reductase, NADPH, dihydroquercetin, rossmann fold,
oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera}
PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*
Length = 337
Score = 33.4 bits (77), Expect = 0.077
Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 30/114 (26%)
Query: 128 RGASVFVTGGTGFMGKTLTEKLLRACPHLERVYLL---VR-PKKGKTVSERLDELFEDRL 183
+ +V VTG +GF+G L +L LER Y + VR P K V L +L
Sbjct: 4 QSETVCVTGASGFIGSWLVMRL------LERGYTVRATVRDPTNVKKVKH-LLDL----- 51
Query: 184 FSRLKAEVPHFRSKISVVTGDVSLPGLGLSAADRAVLRRNVTVVFHGAATVRFD 237
P + +++ D++ G + D A+ + T VFH A + F+
Sbjct: 52 --------PKAETHLTLWKADLADEG----SFDEAI--KGCTGVFHVATPMDFE 91
Score = 30.3 bits (69), Expect = 0.68
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 70 RGASVFVTGGTGFMGKTLTEKLLRA 94
+ +V VTG +GF+G L +LL
Sbjct: 4 QSETVCVTGASGFIGSWLVMRLLER 28
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA;
3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Length = 660
Score = 33.5 bits (77), Expect = 0.084
Identities = 38/145 (26%), Positives = 57/145 (39%), Gaps = 21/145 (14%)
Query: 131 SVFVTGGTGFMGKTLTEKLLRACPHLERVYLLVRPKKGKTVSERLDELFEDRLFSRLKAE 190
V + G GF+G LTE+LLR + VY L S+ + F ++ +
Sbjct: 317 RVLILGVNGFIGNHLTERLLREDHY--EVYGL------DIGSDAISRFLNHPHFHFVEGD 368
Query: 191 VPHFRSKIS--VVTGDVSLPGLGLSA-ADRAVLRRNVTVVFHGAATVRFDENIKVAIAIN 247
+ I V DV LP L A A RN VF + F+EN+++
Sbjct: 369 ISIHSEWIEYHVKKCDVVLP---LVAIATPIEYTRNPLRVFE----LDFEENLRIIRYCV 421
Query: 248 IFGS-FVHVSTA--YTHCPRQEIDE 269
+ + ST+ Y C + DE
Sbjct: 422 KYRKRIIFPSTSEVYGMCSDKYFDE 446
Score = 30.0 bits (68), Expect = 1.1
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 54 RVVPPDEVGS-PIQEFYRGASVFVTGGTGFMGKTLTEKLLRACPH 97
+V + S P R V + G GF+G LTE+LLR +
Sbjct: 297 GLVQGSRLNSQPACTARRRTRVLILGVNGFIGNHLTERLLREDHY 341
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold,
cupid domain, short-chain dehydrogenase/reduc NADPH;
2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Length = 369
Score = 33.0 bits (75), Expect = 0.093
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Query: 74 VFVTGGTGFMGKTLTEKLLRACPHLERVYLLVRPKKGKTVSERLDELFEDREF 126
+ +TG GF+GK L L H ++ + R +T E L+ +F
Sbjct: 3 IVITGAKGFVGKNLKADLTSTTDH--HIFEVHR----QTKEEELESALLKADF 49
Score = 33.0 bits (75), Expect = 0.098
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 6/50 (12%)
Query: 132 VFVTGGTGFMGKTLTEKLLRACPHLERVYLLVRPKKGKTVSERLDELFED 181
+ +TG GF+GK L L H ++ + R +T E L+
Sbjct: 3 IVITGAKGFVGKNLKADLTSTTDH--HIFEVHR----QTKEEELESALLK 46
>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N
biosynthes methyltransferase, transferase; 2.3A
{Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A
1z75_A 1z7b_A 1z74_A
Length = 345
Score = 33.1 bits (76), Expect = 0.098
Identities = 25/101 (24%), Positives = 35/101 (34%), Gaps = 27/101 (26%)
Query: 132 VFVTGGTGFMGKTLTEKLLRACPHLERVYLLVRPKKGKTVSERLDELFEDRLFSRLKAEV 191
V + G GF+G LTE+LLR + VY L S+ +
Sbjct: 3 VLILGVNGFIGNHLTERLLREDHY--EVYGL------DIGSDAISRFLNH---------- 44
Query: 192 PHFRSKISVVTGDVSLPGLGLSAADRAVLRRNVTVVFHGAA 232
PHF V GD+S+ + + VV A
Sbjct: 45 PHFH----FVEGDISIHSEWIEY-----HVKKCDVVLPLVA 76
Score = 31.2 bits (71), Expect = 0.39
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 74 VFVTGGTGFMGKTLTEKLLR 93
V + G GF+G LTE+LLR
Sbjct: 3 VLILGVNGFIGNHLTERLLR 22
>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain
dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis
vinifera} PDB: 3hfs_A
Length = 338
Score = 33.0 bits (76), Expect = 0.098
Identities = 24/111 (21%), Positives = 35/111 (31%), Gaps = 33/111 (29%)
Query: 132 VFVTGGTGFMGKTLTEKLLRACPHLERVYLLVR-----PKKGKTVSERLDELFEDRLFSR 186
V GGTGF+ L + L L++ Y V P K VS L+ L
Sbjct: 12 ACVVGGTGFVASLLVKLL------LQKGY-AVNTTVRDPDNQKKVSHLLELQELGDL--- 61
Query: 187 LKAEVPHFRSKISVVTGDVSLPGLGLSAADRAVLRRNVTVVFHGAATVRFD 237
+ D++ + + + VFH A V F
Sbjct: 62 ------------KIFRADLTDEL----SFEAPI--AGCDFVFHVATPVHFA 94
Score = 29.9 bits (68), Expect = 0.83
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 74 VFVTGGTGFMGKTLTEKLLRA 94
V GGTGF+ L + LL+
Sbjct: 12 ACVVGGTGFVASLLVKLLLQK 32
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD
binding, isomerase; HET: NAD; 2.55A {Helicobacter
pylori}
Length = 362
Score = 32.7 bits (75), Expect = 0.12
Identities = 27/129 (20%), Positives = 49/129 (37%), Gaps = 31/129 (24%)
Query: 132 VFVTGGTGFMGKTLTEKLLRACPHLERVYLLVRPKKGKTVSERLDELFEDRLFSRLK-AE 190
+ +TGG GF+G L P + ++V LD+ + LFS + +
Sbjct: 13 ILITGGAGFVGSNLAFHFQENHPKAK---VVV-----------LDKFRSNTLFSNNRPSS 58
Query: 191 VPHFRSKI----SVVTGDVSLPGLGLSAADRAVLRRNVTVVFHGAA----TVRFDENIKV 242
+ HF++ I V+ D++ P + +FH AA T+ N ++
Sbjct: 59 LGHFKNLIGFKGEVIAADINNPLDLRRLEK-----LHFDYLFHQAAVSDTTM---LNQEL 110
Query: 243 AIAINIFGS 251
+ N
Sbjct: 111 VMKTNYQAF 119
Score = 27.3 bits (61), Expect = 7.6
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 74 VFVTGGTGFMGKTLTEKLLR 93
+ +TGG GF+G L
Sbjct: 13 ILITGGAGFVGSNLAFHFQE 32
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, plant protein; HET: NDP; 1.50A
{Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A*
3c3x_A* 2qw8_A*
Length = 318
Score = 32.6 bits (74), Expect = 0.14
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 73 SVFVTGGTGFMGKTLTEKLLRACPHLERVYLLVRPKKGKT 112
+ + GGTG++G + + L+ Y+ RP KT
Sbjct: 13 KILIFGGTGYIGNHMVKGSLKLGHP---TYVFTRPNSSKT 49
Score = 32.6 bits (74), Expect = 0.14
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 131 SVFVTGGTGFMGKTLTEKLLRACPHLERVYLLVRPKKGKT 170
+ + GGTG++G + + L+ Y+ RP KT
Sbjct: 13 KILIFGGTGYIGNHMVKGSLKLGHP---TYVFTRPNSSKT 49
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.34
Identities = 8/34 (23%), Positives = 11/34 (32%), Gaps = 12/34 (35%)
Query: 182 RLFSRLKAEVPHFRSKISVVTGDVSLPGLGLSAA 215
+L + LK D S P L + A
Sbjct: 24 KLQASLKLYAD-----------D-SAPALAIKAT 45
>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant
protein; 1.40A {Medicago sativa}
Length = 322
Score = 31.4 bits (72), Expect = 0.34
Identities = 30/106 (28%), Positives = 42/106 (39%), Gaps = 21/106 (19%)
Query: 132 VFVTGGTGFMGKTLTEKLLRACPHLERVYLLVRPKKGKTVSERLDELFEDRLFSRLKAEV 191
V VTGGTGF+G + + L LE Y V T+ R D R S L +
Sbjct: 4 VCVTGGTGFLGSWIIKSL------LENGY-SVN----TTI--RADPE-RKRDVSFLTN-L 48
Query: 192 PHFRSKISVVTGDVSLPGLGLSAADRAVLRRNVTVVFHGAATVRFD 237
P K+ D+S P + A+ +FH A+ + F
Sbjct: 49 PGASEKLHFFNADLSNPD----SFAAAI--EGCVGIFHTASPIDFA 88
Score = 29.9 bits (68), Expect = 0.86
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 74 VFVTGGTGFMGKTLTEKLLRA 94
V VTGGTGF+G + + LL
Sbjct: 4 VCVTGGTGFLGSWIIKSLLEN 24
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 31.4 bits (71), Expect = 0.40
Identities = 23/114 (20%), Positives = 39/114 (34%), Gaps = 28/114 (24%)
Query: 129 GASVFVTGGTGFMGKTLTEKLLRACPHLERVYLLVR--PKKGKTVSERLDELFEDRLFSR 186
S +TGG G G L + L +++ L R + G + ++ E R
Sbjct: 1884 HKSYVITGGLGGFGLQLAQWLRLR--GAQKLVLTSRSGIRTG-YQARQVREW------RR 1934
Query: 187 LKAEVPHFRSKISVVTGDVSLPGLGLSAADRAVLRRN-----VTVVFHGAATVR 235
+V V T + S R+++ V VF+ A +R
Sbjct: 1935 QGVQV-------LVSTSNASSL-----DGARSLITEATQLGPVGGVFNLAMVLR 1976
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, melioidosis,
glanders; 2.10A {Burkholderia pseudomallei}
Length = 372
Score = 30.9 bits (70), Expect = 0.45
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 70 RGASVFVTGGTGFMGKTLTEKLLR 93
+ V + G GF+G L++++L
Sbjct: 23 KAKKVLILGVNGFIGHHLSKRILE 46
Score = 30.9 bits (70), Expect = 0.45
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 128 RGASVFVTGGTGFMGKTLTEKLLR 151
+ V + G GF+G L++++L
Sbjct: 23 KAKKVLILGVNGFIGHHLSKRILE 46
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural
genomics, PSI-2, protein structure initiative; HET:
NDP; 1.78A {Lactobacillus casei atcc 334}
Length = 224
Score = 30.4 bits (68), Expect = 0.55
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 74 VFVTGGTGFMGKTLTEKLLRA 94
+ V G TG G + + R
Sbjct: 3 IAVLGATGRAGSAIVAEARRR 23
Score = 30.4 bits (68), Expect = 0.55
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 132 VFVTGGTGFMGKTLTEKLLRA 152
+ V G TG G + + R
Sbjct: 3 IAVLGATGRAGSAIVAEARRR 23
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins,
biosynthesis, EXO-glycal, rossman transferase; HET: UD1
NAD; 1.90A {Streptomyces chartreusis}
Length = 321
Score = 30.6 bits (70), Expect = 0.64
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 74 VFVTGGTGFMGKTLTEKLLRA 94
+ +TGG GF+G L L+ +
Sbjct: 10 ILITGGAGFIGGHLARALVAS 30
Score = 30.6 bits (70), Expect = 0.64
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 132 VFVTGGTGFMGKTLTEKLLRA 152
+ +TGG GF+G L L+ +
Sbjct: 10 ILITGGAGFIGGHLARALVAS 30
>2dcl_A Hypothetical UPF0166 protein PH1503; hexamer, structural genomics,
NPPSFA, national project on PR structural and functional
analyses; HET: AMP; 2.28A {Pyrococcus horikoshii}
Length = 127
Score = 29.3 bits (66), Expect = 0.69
Identities = 17/101 (16%), Positives = 41/101 (40%), Gaps = 4/101 (3%)
Query: 100 RVYLLVRPK-KGKTVSERLDELFEDREFYRGASVF-VTGGTGFMGKTLTEKLLRACPHL- 156
R+Y+ K +G+ + + + E + GA+V+ G G + + ++R L
Sbjct: 13 RIYIGENDKWEGRPLYKVIVEKLREMGI-AGATVYRGIYGFGKKSRVHSSDVIRLSTDLP 71
Query: 157 ERVYLLVRPKKGKTVSERLDELFEDRLFSRLKAEVPHFRSK 197
V ++ R + V + + +D + + V ++
Sbjct: 72 IIVEVVDRGHNIEKVVNVIKPMIKDGMITVEPTIVLWVGTQ 112
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase,
GDP-gulose, GDP-galactose, keto intermediate, vitamin
C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana}
SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Length = 379
Score = 29.6 bits (67), Expect = 1.2
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 74 VFVTGGTGFMGKTLTEKLLR 93
+ +TG GF+ + +L
Sbjct: 32 ISITGAGGFIASHIARRLKH 51
Score = 29.6 bits (67), Expect = 1.2
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 132 VFVTGGTGFMGKTLTEKLLR 151
+ +TG GF+ + +L
Sbjct: 32 ISITGAGGFIASHIARRLKH 51
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, protein-nucleotide comple binding
protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica}
PDB: 2pzl_A* 2pzk_A*
Length = 330
Score = 29.4 bits (67), Expect = 1.4
Identities = 25/107 (23%), Positives = 35/107 (32%), Gaps = 36/107 (33%)
Query: 131 SVFVTGGTGFMGKTLTEKLLRACPHLERVYLLVRPKKGKTVSERLDELFEDRLFSRLKAE 190
+ +TGG G +G L E L G + +D + K E
Sbjct: 22 RILITGGAGCLGSNLIEHWLPQ---------------GHEILV-IDNF------ATGKRE 59
Query: 191 VPHFRSKISVVTGDVSLPGLGLSAADRAVLRR-----NVTVVFHGAA 232
V + +SV+ G V D +L R T V H AA
Sbjct: 60 VLPPVAGLSVIEGSV---------TDAGLLERAFDSFKPTHVVHSAA 97
>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate
metabolism, stress response; HET: NAP ADP BMA; 2.36A
{Escherichia coli} PDB: 2x86_A*
Length = 357
Score = 29.2 bits (66), Expect = 1.6
Identities = 24/123 (19%), Positives = 36/123 (29%), Gaps = 30/123 (24%)
Query: 132 VFVTGGTGFMGKTLTEKLLRACPHLERVYLLVRPKKGKTVSERLDELFEDRLFSRLKAEV 191
+ VTGG GF+G + + L + LV +D L + F L
Sbjct: 49 IIVTGGAGFIGSNIVKALNDKGIT--DI--LV-----------VDNLKDGTKFVNL---- 89
Query: 192 PHFRSKISVVTGDVSLPGLGLSAADRAVLRRNVTVVFHGAA---TVRFDENIKVAIAINI 248
+ D L +V +FH A T +D + N
Sbjct: 90 VDLNIADYMDKEDF------LIQIMAGEEFGDVEAIFHEGACSSTTEWDGKY--MMDNNY 141
Query: 249 FGS 251
S
Sbjct: 142 QYS 144
Score = 27.6 bits (62), Expect = 5.8
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 74 VFVTGGTGFMGKTLTEKLLRA 94
+ VTGG GF+G + + L
Sbjct: 49 IIVTGGAGFIGSNIVKALNDK 69
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine
reductase fold (domain II), alpha/beta protein; 1.70A
{Saccharomyces cerevisiae}
Length = 467
Score = 29.4 bits (65), Expect = 1.6
Identities = 13/86 (15%), Positives = 29/86 (33%), Gaps = 8/86 (9%)
Query: 79 GTGFMGKTLTEKLLR--------ACPHLERVYLLVRPKKGKTVSERLDELFEDREFYRGA 130
G+GF+ + + + L AC L L +P K +S + + +
Sbjct: 30 GSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADN 89
Query: 131 SVFVTGGTGFMGKTLTEKLLRACPHL 156
V ++ + + +R +
Sbjct: 90 DVVISLIPYTFHPNVVKSAIRTKTDV 115
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta
protein., structural genomics, PSI-2, protein STR
initiative; 1.60A {Staphylococcus aureus subsp}
Length = 289
Score = 29.2 bits (66), Expect = 1.7
Identities = 10/45 (22%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 73 SVFVTGGTGFMGKTLTEKLLRACPHLERVYLLVR-PKKGKTVSER 116
++ +TG TG +G +T + + H++ ++ VR +K
Sbjct: 2 NIMLTGATGHLGTHITNQAIAN--HIDHFHIGVRNVEKVPDDWRG 44
Score = 29.2 bits (66), Expect = 1.7
Identities = 10/45 (22%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 131 SVFVTGGTGFMGKTLTEKLLRACPHLERVYLLVR-PKKGKTVSER 174
++ +TG TG +G +T + + H++ ++ VR +K
Sbjct: 2 NIMLTGATGHLGTHITNQAIAN--HIDHFHIGVRNVEKVPDDWRG 44
>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; 1.80A {Thermotoga maritima}
SCOP: c.2.1.3 d.81.1.1
Length = 351
Score = 29.0 bits (66), Expect = 1.8
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 132 VFVTGGTGFMGKTLTEKLLRACPHLERVYLLVRPKKGKTVSERLDELFEDRLFSRLKAE 190
+ G TG+ G L +LL+ P + YL R GK + E E+ + S E
Sbjct: 16 AGIIGATGYTGLELV-RLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPE 73
Score = 26.7 bits (60), Expect = 8.7
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 74 VFVTGGTGFMGKTLTEKLLRACPHLERVYLLVRPKKGKTVSERLDELFEDREF 126
+ G TG+ G L +LL+ P + YL R GK + E E+
Sbjct: 16 AGIIGATGYTGLELV-RLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSIL 67
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid
decarboxylase, structural genomics, STRU genomics
consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo
sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*
Length = 343
Score = 28.9 bits (65), Expect = 1.9
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 74 VFVTGGTGFMGKTLTEKLLR 93
+ +TGG GF+G LT+KL+
Sbjct: 30 ILITGGAGFVGSHLTDKLMM 49
Score = 28.9 bits (65), Expect = 1.9
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 132 VFVTGGTGFMGKTLTEKLLR 151
+ +TGG GF+G LT+KL+
Sbjct: 30 ILITGGAGFVGSHLTDKLMM 49
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct
structural genomics, PSI, protein structure initiative;
HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Length = 335
Score = 29.0 bits (66), Expect = 2.0
Identities = 23/95 (24%), Positives = 33/95 (34%), Gaps = 26/95 (27%)
Query: 126 FYRGASVFVTGGTGFMGKTLTEK---LLRACPHLERVYLLVRPKKGKTVSERLDEL---- 178
F+R + V GG G + E+ L R V L+ R R DE
Sbjct: 152 FFRDQDIAVIGG----GDSAMEEATFLTRFARS---VTLVHR---------R-DEFRASK 194
Query: 179 -FEDRLFSRLKAEVPHFRSKISVVTGDVSLPGLGL 212
DR + K + V GD ++ GL +
Sbjct: 195 IMLDRARNNDKIRF-LTNHTVVAVDGDTTVTGLRV 228
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein,
redox-active center, oxidoreductase, D oxidoreductase;
HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5
c.3.1.5 PDB: 2whd_A*
Length = 333
Score = 29.1 bits (66), Expect = 2.0
Identities = 20/93 (21%), Positives = 31/93 (33%), Gaps = 26/93 (27%)
Query: 126 FYRGASVFVTGGTGFMGKTLTEK---LLRACPHLERVYLLVRPKKGKTVSERLDEL---- 178
+R + V GG G + E+ L + VY++ R R D
Sbjct: 156 IFRNKPLAVIGG----GDSAMEEANFLTKYGSK---VYIIHR---------R-DAFRASK 198
Query: 179 -FEDRLFSRLKAEVPHFRSKISVVTGDVSLPGL 210
+ R S K +V + S + GD L
Sbjct: 199 IMQQRALSNPKIDV-IWNSSVVEAYGDGERDVL 230
>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate
aldolase; sequestered tunnel, substrate channeling; HET:
NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1
Length = 312
Score = 28.8 bits (64), Expect = 2.0
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 79 GTGFMGKTLTEKLLRACPHLERVYLLVR 106
G+G +G L K+LR +LE ++
Sbjct: 11 GSGNIGTDLMIKVLRNAKYLEMGAMVGI 38
Score = 28.8 bits (64), Expect = 2.0
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 137 GTGFMGKTLTEKLLRACPHLERVYLLVR 164
G+G +G L K+LR +LE ++
Sbjct: 11 GSGNIGTDLMIKVLRNAKYLEMGAMVGI 38
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM
radical, activase, glycyl radical, 4Fe- 4S, carbohydrate
metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia
coli} PDB: 3cb8_A*
Length = 245
Score = 28.8 bits (65), Expect = 2.2
Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 4/51 (7%)
Query: 107 PKKGK--TVSERLDELFEDREFYR--GASVFVTGGTGFMGKTLTEKLLRAC 153
GK TV + + E+ R F G V +GG + RAC
Sbjct: 44 THGGKEVTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRAC 94
>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A
{Escherichia coli} PDB: 2zcv_A*
Length = 286
Score = 28.8 bits (65), Expect = 2.2
Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 76 VTGGTGFMGKTLTEKLLRACPHLERVYLLVR-PKKGKTVSER 116
+TG TG +G + E L++ P ++ +VR P K + ++ +
Sbjct: 4 ITGATGQLGHYVIESLMKTVPA-SQIVAIVRNPAKAQALAAQ 44
Score = 28.8 bits (65), Expect = 2.2
Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 134 VTGGTGFMGKTLTEKLLRACPHLERVYLLVR-PKKGKTVSER 174
+TG TG +G + E L++ P ++ +VR P K + ++ +
Sbjct: 4 ITGATGQLGHYVIESLMKTVPA-SQIVAIVRNPAKAQALAAQ 44
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET:
NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A
2vrc_D
Length = 287
Score = 28.4 bits (64), Expect = 2.4
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 73 SVFVTGGTGFMGKTLTEKLLRACPHLERVYLLVR-PKKGKTVSER 116
S+ VTG TG +G + + LL+ P ++ +VR +K T++++
Sbjct: 2 SIAVTGATGQLGGLVIQHLLKKVPA-SQIIAIVRNVEKASTLADQ 45
Score = 28.4 bits (64), Expect = 2.4
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 131 SVFVTGGTGFMGKTLTEKLLRACPHLERVYLLVR-PKKGKTVSER 174
S+ VTG TG +G + + LL+ P ++ +VR +K T++++
Sbjct: 2 SIAVTGATGQLGGLVIQHLLKKVPA-SQIIAIVRNVEKASTLADQ 45
>3k50_A Putative S41 protease; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative;
2.00A {Bacteroides fragilis nctc 9343}
Length = 403
Score = 28.6 bits (64), Expect = 2.7
Identities = 6/41 (14%), Positives = 12/41 (29%), Gaps = 4/41 (9%)
Query: 30 SEIVT-AQYPIDPFELLGENSFGKPRV---VPPDEVGSPIQ 66
+E+V P L+G + G+ +
Sbjct: 305 AEMVINCLNPYMKVVLIGTKTAGEYVATKPFVHPTDRFILN 345
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted
open sheet structure, oxidoreductase; 1.90A
{Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4
PDB: 1lua_A*
Length = 287
Score = 28.3 bits (63), Expect = 2.8
Identities = 16/102 (15%), Positives = 30/102 (29%), Gaps = 18/102 (17%)
Query: 70 RGASVFVTGGTGFMGKTLTEKLLRACPHLERVYLLVRPKKGKTVSERLDELF-------- 121
+G V GTG +G L + + K + ++ +++ F
Sbjct: 118 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGR--KLDKAQAAADSVNKRFKVNVTAAE 175
Query: 122 -----EDREFYRGASVFV-TGGTGFMGKTLTEKLLRACPHLE 157
E +GA G G L + + +E
Sbjct: 176 TADDASRAEAVKGAHFVFTAGAIGLE--LLPQAAWQNESSIE 215
>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose
4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis}
PDB: 3icp_A* 3aw9_A*
Length = 312
Score = 28.3 bits (64), Expect = 3.1
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 74 VFVTGGTGFMGKTLTEKLLRA 94
+ VTGG GF+G L +KL+
Sbjct: 3 IVVTGGAGFIGSHLVDKLVEL 23
Score = 28.3 bits (64), Expect = 3.1
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 132 VFVTGGTGFMGKTLTEKLLRA 152
+ VTGG GF+G L +KL+
Sbjct: 3 IVVTGGAGFIGSHLVDKLVEL 23
>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET:
NAP; 2.20A {Rattus norvegicus}
Length = 201
Score = 27.7 bits (61), Expect = 4.3
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 78 GGTGFMGKTLTEKLLRA 94
GTG GK+L K+L+
Sbjct: 25 FGTGDFGKSLGLKMLQC 41
Score = 27.7 bits (61), Expect = 4.3
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 136 GGTGFMGKTLTEKLLRA 152
GTG GK+L K+L+
Sbjct: 25 FGTGDFGKSLGLKMLQC 41
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold,
structural genomics; HET: NAP F42; 1.65A {Archaeoglobus
fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Length = 212
Score = 27.5 bits (60), Expect = 4.5
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 76 VTGGTGFMGKTLTEKLLRA 94
+ GGTG +GK L +L
Sbjct: 5 LLGGTGNLGKGLALRLATL 23
Score = 27.5 bits (60), Expect = 4.5
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 134 VTGGTGFMGKTLTEKLLRA 152
+ GGTG +GK L +L
Sbjct: 5 LLGGTGNLGKGLALRLATL 23
>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain
rossmann fold, C-terminal mixed alpha/beta domain; HET:
NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2
Length = 310
Score = 27.6 bits (62), Expect = 4.7
Identities = 24/123 (19%), Positives = 36/123 (29%), Gaps = 30/123 (24%)
Query: 132 VFVTGGTGFMGKTLTEKLLRACPHLERVYLLVRPKKGKTVSERLDELFEDRLFSRLKAEV 191
+ VTGG GF+G + + L + LV +D L + F L
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGIT--DI--LV-----------VDNLKDGTKFVNLV--- 43
Query: 192 PHFRSKISVVTGDVSLPGLGLSAADRAVLRRNVTVVFHGAA---TVRFDENIKVAIAINI 248
+ D L +V +FH A T +D + N
Sbjct: 44 -DLNIADYMDKEDF------LIQIMAGEEFGDVEAIFHEGACSSTTEWDGKY--MMDNNY 94
Query: 249 FGS 251
S
Sbjct: 95 QYS 97
Score = 27.2 bits (61), Expect = 7.4
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 74 VFVTGGTGFMGKTLTEKLLRA 94
+ VTGG GF+G + + L
Sbjct: 2 IIVTGGAGFIGSNIVKALNDK 22
>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces
nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*
Length = 496
Score = 27.8 bits (62), Expect = 4.7
Identities = 30/126 (23%), Positives = 40/126 (31%), Gaps = 38/126 (30%)
Query: 124 REFYRGASVFVTGGTGFMGKTLTEKLLRA-CPHLERVYLLV--RPKKGKTVSERLDELFE 180
+ SV VTGGTG +G + +L HL +L R +E EL
Sbjct: 234 KRPPVHGSVLVTGGTGGIGGRVARRLAEQGAAHL----VLTSRRGADAPGAAELRAEL-- 287
Query: 181 DRLFSRLKAEVPHFRSKISVVTGDVSLPGLGLSAADRAVLRR---------NVTVVFHGA 231
+L V ++ D ADR L +T VFH A
Sbjct: 288 ----EQLGVRV-------TIAACDA---------ADREALAALLAELPEDAPLTAVFHSA 327
Query: 232 ATVRFD 237
D
Sbjct: 328 GVAHDD 333
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
2.10A {Burkholderia thailandensis}
Length = 272
Score = 27.6 bits (62), Expect = 4.8
Identities = 25/121 (20%), Positives = 44/121 (36%), Gaps = 32/121 (26%)
Query: 134 VTGGTGFMGKTLTEKLLRACPHLERVYLLVRP---------------KKGKTVSERLDEL 178
+ G +G MG+ L E + A P V L R + G +++ ++ +
Sbjct: 12 IAGASGRMGRMLIE-AVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQTGVALTDDIERV 70
Query: 179 FE--DRL--FSRLKAEVPHFR----SKISVVTGDVSLPGLGLSAADRAVLR---RNVTVV 227
D L F+ + + H + +V G G S +A LR + +V
Sbjct: 71 CAEADYLIDFTLPEGTLVHLDAALRHDVKLVIGTT-----GFSEPQKAQLRAAGEKIALV 125
Query: 228 F 228
F
Sbjct: 126 F 126
>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics,
protein structure initiative, NEW YORK SGX resear for
structural genomics; HET: NAD; 1.87A {Archaeoglobus
fulgidus}
Length = 313
Score = 27.5 bits (62), Expect = 5.8
Identities = 21/103 (20%), Positives = 33/103 (32%), Gaps = 36/103 (34%)
Query: 132 VFVTGGTGFMGKTLTEKLLRACPHLERVYLLVRPKKGKTVSERLDELFEDRLFSRLKAEV 191
+ VTGG GF+G + +KL + + V D L S + V
Sbjct: 4 IVVTGGAGFIGSHVVDKLSES--NEIVVI--------------------DNLSSGNEEFV 41
Query: 192 PHFRSKISVVTGDVSLPGLGLSAADRAVLR--RNVTVVFHGAA 232
+V D+ A + + V+H AA
Sbjct: 42 NE---AARLVKADL---------AADDIKDYLKGAEEVWHIAA 72
Score = 27.1 bits (61), Expect = 7.0
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 74 VFVTGGTGFMGKTLTEKLLR 93
+ VTGG GF+G + +KL
Sbjct: 4 IVVTGGAGFIGSHVVDKLSE 23
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 249
Score = 27.1 bits (61), Expect = 6.2
Identities = 8/41 (19%), Positives = 13/41 (31%), Gaps = 15/41 (36%)
Query: 198 ISVVTGDVSLPGLGLSAADRA------------VLRRNVTV 226
SV++ + L S + R V +TV
Sbjct: 141 FSVISP---IENLYTSNSARMALTGFLKTLSFEVAPYGITV 178
>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A
{Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A*
1dru_A* 1drv_A* 1drw_A*
Length = 273
Score = 27.2 bits (61), Expect = 6.9
Identities = 25/122 (20%), Positives = 41/122 (33%), Gaps = 33/122 (27%)
Query: 134 VTGGTGFMGKTLTEKLLRACPHLERVYLLVRP----------------KKGKTVSERLDE 177
+ G G MG+ L + A ++ L R K G TV LD
Sbjct: 10 IAGAGGRMGRQLIQ-AALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDA 68
Query: 178 LFE--DRL--FSRLKAEVPHFR----SKISVVTGDVSLPGLGLSAADRAVLR---RNVTV 226
+ + D F+R + + H +V G G A + +R ++ +
Sbjct: 69 VKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTT-----GFDEAGKQAIRDAAADIAI 123
Query: 227 VF 228
VF
Sbjct: 124 VF 125
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP,
oxidoreductase, phosphoprotein, redox-A center; HET: FAD
CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Length = 338
Score = 27.1 bits (61), Expect = 7.0
Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 26/87 (29%)
Query: 126 FYRGASVFVTGGTGFMGKTLTEK---LLRACPHLERVYLLVRPKKGKTVSERLDEL---- 178
+R + V GG G + E+ L + V++LVR + D L
Sbjct: 170 IFRNKPLAVIGG----GDSACEEAQFLTKYGSK---VFMLVR---------K-DHLRAST 212
Query: 179 -FEDRLFSRLKAEVPHFRSKISVVTGD 204
+ R K E+ + + GD
Sbjct: 213 IMQKRAEKNEKIEI-LYNTVALEAKGD 238
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur
cluster, oxidoreductase, bacteriochlorophyll
biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus}
PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Length = 525
Score = 27.1 bits (60), Expect = 7.6
Identities = 11/70 (15%), Positives = 20/70 (28%), Gaps = 4/70 (5%)
Query: 82 FMGKTLTEKLLRACPHLERVYLLVRPKKGKTVSERLDELFEDREFYRGASVFVTGGTGFM 141
+G T L + ++ L T+ + D + G VF+ G G
Sbjct: 236 PIGVGATRDFLAE---VSKITGLPVVTDESTLRQPWWSASVDSTYLTGKRVFIFGD-GTH 291
Query: 142 GKTLTEKLLR 151
+
Sbjct: 292 VIAAARIAAK 301
>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase,
oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora
erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*
Length = 486
Score = 27.4 bits (61), Expect = 7.7
Identities = 35/125 (28%), Positives = 45/125 (36%), Gaps = 38/125 (30%)
Query: 123 DREFYRGASVFVTGGTGFMGKTLTEKLLRA-CPHLERVYLLV--RPKKGKTVSERLDELF 179
D E+ +V VTGGTG +G + L R PHL LLV E + EL
Sbjct: 220 DDEWKPTGTVLVTGGTGGVGGQIARWLARRGAPHL----LLVSRSGPDADGAGELVAEL- 274
Query: 180 EDRLFSRLKAEVPHFRSKISVVTGDVSLPGLGLSAADRAVLRR---------NVTVVFHG 230
L A +V DV DR +R ++ VFH
Sbjct: 275 -----EALGART-------TVAACDV---------TDRESVRELLGGIGDDVPLSAVFHA 313
Query: 231 AATVR 235
AAT+
Sbjct: 314 AATLD 318
>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET:
NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*
Length = 311
Score = 27.1 bits (61), Expect = 7.8
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 74 VFVTGGTGFMGKTLTEKLLRA 94
V VTGG GF+G + E LL
Sbjct: 3 VLVTGGAGFIGSHIVEDLLAR 23
Score = 27.1 bits (61), Expect = 7.8
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 132 VFVTGGTGFMGKTLTEKLLRA 152
V VTGG GF+G + E LL
Sbjct: 3 VLVTGGAGFIGSHIVEDLLAR 23
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann
fold, transport, cell cycle, transferrin, flavoprotein,
alternative splicing; HET: CIT; 2.0A {Homo sapiens}
PDB: 2vq3_A*
Length = 215
Score = 26.8 bits (59), Expect = 8.1
Identities = 4/16 (25%), Positives = 10/16 (62%)
Query: 79 GTGFMGKTLTEKLLRA 94
G+G ++L +L+ +
Sbjct: 35 GSGDFARSLATRLVGS 50
Score = 26.8 bits (59), Expect = 8.1
Identities = 4/16 (25%), Positives = 10/16 (62%)
Query: 137 GTGFMGKTLTEKLLRA 152
G+G ++L +L+ +
Sbjct: 35 GSGDFARSLATRLVGS 50
>3q9t_A Choline dehydrogenase and related flavoproteins;
glucose-methanol-choline oxidoreductase family, formate
OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A
{Aspergillus oryzae}
Length = 577
Score = 27.2 bits (61), Expect = 8.4
Identities = 4/35 (11%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 213 SAADRAVLRRNVTVVFHGAAT-VRFDENIKVAIAI 246
+ + N+T+V + + +E + +
Sbjct: 210 GSFLFVKNKPNITIVPEVHSKRLIINEADRTCKGV 244
>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2;
short-chain dehydrogenase/reductase, rossman fold; 1.95A
{Streptomyces fradiae}
Length = 511
Score = 27.1 bits (60), Expect = 8.4
Identities = 26/112 (23%), Positives = 36/112 (32%), Gaps = 30/112 (26%)
Query: 130 ASVFVTGGTGFMGKTLTEKLLRACPHLERVYLLVRPKKGKTVSERL-DELFEDRLFSRLK 188
+V +TGG G +G+ L +L ER+ L R + L +EL
Sbjct: 260 GTVLITGGMGAIGRRLARRLAAE--GAERLVLTSRRGPEAPGAAELAEEL------RGHG 311
Query: 189 AEVPHFRSKISVVTGDVSLPGLGLSAADRAVLRR-----NVTVVFHGAATVR 235
EV DV A+R L VFH A +
Sbjct: 312 CEV-------VHAACDV---------AERDALAALVTAYPPNAVFHTAGILD 347
>3c5o_A UPF0311 protein RPA1785; beta-barrels, structural genomics, PSI-2,
protein structure initiative; 2.20A {Rhodopseudomonas
palustris}
Length = 157
Score = 26.5 bits (58), Expect = 8.7
Identities = 34/162 (20%), Positives = 54/162 (33%), Gaps = 30/162 (18%)
Query: 24 APKLEMSEIVTAQYPIDPFELLGENSFGKPRVVPPDEVGSPIQEFYRGASVFVTGGTGFM 83
P LE + T I GE G R++P + GG
Sbjct: 4 TPTLETKYVFTITARIGDVTSAGEIGTGVRRIIP------------------ILGGE-VK 44
Query: 84 GKTLTEKLLRACPHLERVYLLVRPKKGKTVSERLDELFEDREFYRGASVFVTG-GTGFMG 142
G+ ++ ++L + ++RP + + + FE + GA V+V G F
Sbjct: 45 GEGISGQVLPFGAD----FQIIRPNELIELEAKY--AFETDD---GAVVYVENVGIRFGP 95
Query: 143 KTLTEKLLRACPHLERVYLLVRPKKGKTVSERLDELFEDRLF 184
L KL R P +V + +T L LF
Sbjct: 96 VELLRKLKRGEPVDPKVIYFRTRPRFETGHPNYQWL-MQYLF 136
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode
biostructures, niaid, amino-acid biosynthesis,
cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Length = 288
Score = 26.8 bits (60), Expect = 8.7
Identities = 23/122 (18%), Positives = 42/122 (34%), Gaps = 33/122 (27%)
Query: 134 VTGGTGFMGKTLTEKLLRACPHLERVYLLVRP----------------KKGKTVSERLDE 177
V G G MG+ L + R +E +LVR G +++ +
Sbjct: 26 VVGANGRMGRELITAIQRR-KDVELCAVLVRKGSSFVDKDASILIGSDFLGVRITDDPES 84
Query: 178 LFE--DRL--FSRLKAEVPHFR----SKISVVTGDVSLPGLGLSAADRAVLR---RNVTV 226
F + + FS+ +A V + + + G G S + A + + T+
Sbjct: 85 AFSNTEGILDFSQPQASVLYANYAAQKSLIHIIGTT-----GFSKTEEAQIADFAKYTTI 139
Query: 227 VF 228
V
Sbjct: 140 VK 141
>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase
superfami oxidoreductase; 2.20A {Escherichia coli} SCOP:
b.43.4.2 c.25.1.1
Length = 232
Score = 26.8 bits (60), Expect = 9.4
Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 15/68 (22%)
Query: 132 VFVTGGTGF--MGKTLTEKLLRACPHLERVYLL--VRPKKGKTVSERLDELFEDRLFSRL 187
+ + GGTGF +++ L P+ + + R L++ L
Sbjct: 106 ILIAGGTGFSYA-RSILLTALARNPN-RDITIYWGGR---------EEQHLYDLCELEAL 154
Query: 188 KAEVPHFR 195
+ P +
Sbjct: 155 SLKHPGLQ 162
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP
COA; 1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 26.8 bits (60), Expect = 9.7
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 5/47 (10%)
Query: 53 PRVVPPDEVGSPIQEFYR-----GASVFVTGGTGFMGKTLTEKLLRA 94
P V D+ + + F+TGG +G + E +R
Sbjct: 4 PPDVEGDDCLPAYRHLFCPDLLRDKVAFITGGGSGIGFRIAEIFMRH 50
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.139 0.405
Gapped
Lambda K H
0.267 0.0763 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,843,427
Number of extensions: 313693
Number of successful extensions: 1186
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1165
Number of HSP's successfully gapped: 180
Length of query: 298
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 205
Effective length of database: 4,105,140
Effective search space: 841553700
Effective search space used: 841553700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.7 bits)