BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14529
         (59 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3MLP|A Chain A, Early B-Cell Factor 1 (Ebf1) Bound To Dna
 pdb|3MLP|B Chain B, Early B-Cell Factor 1 (Ebf1) Bound To Dna
 pdb|3MLP|E Chain E, Early B-Cell Factor 1 (Ebf1) Bound To Dna
 pdb|3MLP|F Chain F, Early B-Cell Factor 1 (Ebf1) Bound To Dna
          Length = 402

 Score = 99.4 bits (246), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 50/88 (56%), Positives = 56/88 (63%), Gaps = 29/88 (32%)

Query: 1   MRRFQVVISTQVGVDGPLLAVSDNI-----------------------------PSEGWT 31
           MRRFQVV+ST V VDG +LAVSDN+                             PSEGWT
Sbjct: 185 MRRFQVVVSTTVNVDGHVLAVSDNMFVHNNSKHGRRARRLDPSEAATPCIKAISPSEGWT 244

Query: 32  SGGATVIIVGDNFFDGLQVVFGTMLVWS 59
           +GGATVII+GDNFFDGLQV+FGTMLVWS
Sbjct: 245 TGGATVIIIGDNFFDGLQVIFGTMLVWS 272


>pdb|3N50|A Chain A, Human Early B-Cell Factor 3 (Ebf3) IptTIG AND HLHLH
          DOMAINS
 pdb|3N50|B Chain B, Human Early B-Cell Factor 3 (Ebf3) IptTIG AND HLHLH
          DOMAINS
 pdb|3N50|C Chain C, Human Early B-Cell Factor 3 (Ebf3) IptTIG AND HLHLH
          DOMAINS
 pdb|3N50|D Chain D, Human Early B-Cell Factor 3 (Ebf3) IptTIG AND HLHLH
          DOMAINS
 pdb|3N50|E Chain E, Human Early B-Cell Factor 3 (Ebf3) IptTIG AND HLHLH
          DOMAINS
 pdb|3N50|F Chain F, Human Early B-Cell Factor 3 (Ebf3) IptTIG AND HLHLH
          DOMAINS
          Length = 159

 Score = 72.8 bits (177), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 32/34 (94%), Positives = 34/34 (100%)

Query: 26 PSEGWTSGGATVIIVGDNFFDGLQVVFGTMLVWS 59
          PSEGWT+GGATVII+GDNFFDGLQVVFGTMLVWS
Sbjct: 14 PSEGWTTGGATVIIIGDNFFDGLQVVFGTMLVWS 47


>pdb|3MUJ|A Chain A, Early B-Cell Factor 3 (Ebf3) IptTIG AND DIMERIZATION
          HELICES
 pdb|3MUJ|B Chain B, Early B-Cell Factor 3 (Ebf3) IptTIG AND DIMERIZATION
          HELICES
          Length = 138

 Score = 72.4 bits (176), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 32/34 (94%), Positives = 34/34 (100%)

Query: 26 PSEGWTSGGATVIIVGDNFFDGLQVVFGTMLVWS 59
          PSEGWT+GGATVII+GDNFFDGLQVVFGTMLVWS
Sbjct: 13 PSEGWTTGGATVIIIGDNFFDGLQVVFGTMLVWS 46


>pdb|3MQI|A Chain A, Human Early B-Cell Factor 1 (Ebf1) IptTIG DOMAIN
 pdb|3MQI|B Chain B, Human Early B-Cell Factor 1 (Ebf1) IptTIG DOMAIN
 pdb|3MQI|C Chain C, Human Early B-Cell Factor 1 (Ebf1) IptTIG DOMAIN
          Length = 96

 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 31/34 (91%), Positives = 34/34 (100%)

Query: 26 PSEGWTSGGATVIIVGDNFFDGLQVVFGTMLVWS 59
          PSEGWT+GGATVII+GDNFFDGLQV+FGTMLVWS
Sbjct: 14 PSEGWTTGGATVIIIGDNFFDGLQVIFGTMLVWS 47


>pdb|3MLN|A Chain A, Dna Binding Domain Of Early B-Cell Factor 1 (Ebf1) Bound
           To Dna (Crystal Form Ii)
 pdb|3MLN|B Chain B, Dna Binding Domain Of Early B-Cell Factor 1 (Ebf1) Bound
           To Dna (Crystal Form Ii)
 pdb|3MLN|E Chain E, Dna Binding Domain Of Early B-Cell Factor 1 (Ebf1) Bound
           To Dna (Crystal Form Ii)
 pdb|3MLO|A Chain A, Dna Binding Domain Of Early B-Cell Factor 1 (Ebf1) Bound
           To Dna (Crystal Form I)
 pdb|3MLO|B Chain B, Dna Binding Domain Of Early B-Cell Factor 1 (Ebf1) Bound
           To Dna (Crystal Form I)
          Length = 224

 Score = 42.7 bits (99), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/25 (76%), Positives = 22/25 (88%)

Query: 1   MRRFQVVISTQVGVDGPLLAVSDNI 25
           MRRFQVV+ST V VDG +LAVSDN+
Sbjct: 185 MRRFQVVVSTTVNVDGHVLAVSDNM 209


>pdb|3LYR|A Chain A, Human Early B-Cell Factor 1 (Ebf1) Dna-Binding Domain
          Length = 243

 Score = 40.0 bits (92), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/23 (78%), Positives = 20/23 (86%)

Query: 2   RRFQVVISTQVGVDGPLLAVSDN 24
           RRFQVV+ST V VDG +LAVSDN
Sbjct: 202 RRFQVVVSTTVNVDGHVLAVSDN 224


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.141    0.435 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,804,809
Number of Sequences: 62578
Number of extensions: 55646
Number of successful extensions: 490
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 483
Number of HSP's gapped (non-prelim): 7
length of query: 59
length of database: 14,973,337
effective HSP length: 30
effective length of query: 29
effective length of database: 13,095,997
effective search space: 379783913
effective search space used: 379783913
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)