Query psy14529
Match_columns 59
No_of_seqs 34 out of 36
Neff 2.9
Searched_HMMs 46136
Date Fri Aug 16 22:12:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14529.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14529hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01175 IPT_COE IPT domain of 99.7 2.3E-18 5E-23 109.5 3.6 34 26-59 8-41 (85)
2 KOG3836|consensus 98.5 4.6E-08 1E-12 78.3 1.7 53 1-53 248-357 (605)
3 KOG3836|consensus 97.9 4.3E-06 9.3E-11 67.2 1.3 59 1-59 9-109 (605)
4 cd00603 IPT_PCSR IPT domain of 97.5 0.00014 3.1E-09 42.2 3.2 31 26-56 8-41 (90)
5 cd00102 IPT Immunoglobulin-lik 97.4 0.0002 4.2E-09 40.6 3.1 30 26-55 8-40 (89)
6 PF01833 TIG: IPT/TIG domain; 97.0 0.00046 1E-08 38.3 1.6 32 26-57 8-42 (85)
7 smart00429 IPT ig-like, plexin 96.5 0.0035 7.6E-08 36.2 2.9 28 26-53 9-36 (90)
8 cd01179 IPT_plexin_repeat2 Sec 96.4 0.0045 9.8E-08 36.5 3.2 30 26-55 8-39 (85)
9 cd01180 IPT_plexin_repeat1 Fir 93.9 0.074 1.6E-06 32.1 3.0 30 26-55 8-42 (94)
10 cd01178 IPT_NFAT IPT domain of 88.1 0.63 1.4E-05 30.2 2.9 28 27-54 10-37 (101)
11 cd00602 IPT_TF IPT domain of e 86.5 0.89 1.9E-05 28.9 2.9 28 27-54 9-37 (101)
12 cd01176 IPT_RBP-Jkappa IPT dom 83.3 1.2 2.7E-05 29.2 2.5 22 35-56 20-41 (97)
13 cd01181 IPT_plexin_repeat3 Thi 79.3 1.7 3.7E-05 26.8 2.0 23 26-48 8-30 (99)
14 cd01177 IPT_NFkappaB IPT domai 69.3 6.8 0.00015 25.6 3.0 29 27-55 9-38 (102)
15 cd00604 IPT_CGTD IPT domain (d 68.8 5.6 0.00012 24.0 2.4 22 34-55 14-36 (81)
16 cd02849 CGTase_C_term Cgtase ( 64.9 7.4 0.00016 23.4 2.4 22 34-55 16-38 (81)
17 PF03525 Meiotic_rec114: Meiot 64.3 2.8 6E-05 32.3 0.5 11 1-11 96-106 (328)
18 PF13734 Inhibitor_I69: Spi pr 48.7 19 0.00042 22.7 2.4 18 6-24 54-71 (96)
19 PRK11700 hypothetical protein; 46.4 8.5 0.00018 27.5 0.6 7 26-32 107-113 (187)
20 KOG0813|consensus 43.4 42 0.00092 24.9 3.8 41 7-48 111-153 (265)
21 PF04448 DUF551: Protein of un 43.4 14 0.00031 20.1 1.1 17 19-40 3-19 (69)
22 cd01819 Patatin_and_cPLA2 Pata 39.6 26 0.00057 22.4 2.0 20 14-39 129-153 (155)
23 KOG0179|consensus 37.7 21 0.00047 26.6 1.5 13 32-44 28-40 (235)
24 PTZ00422 glideosome-associated 37.4 17 0.00037 28.1 1.0 42 4-49 13-73 (394)
25 PLN02199 shikimate kinase 37.1 19 0.00042 27.1 1.2 26 2-27 39-73 (303)
26 PF06007 PhnJ: Phosphonate met 31.8 32 0.00069 26.2 1.6 22 22-43 36-60 (277)
27 KOG3374|consensus 31.6 39 0.00085 24.8 2.0 23 7-29 62-88 (210)
28 PF10633 NPCBM_assoc: NPCBM-as 30.4 77 0.0017 17.9 2.8 18 19-37 24-43 (78)
29 cd07268 Glo_EDI_BRP_like_4 Thi 26.7 28 0.00061 24.1 0.6 7 26-32 69-75 (149)
30 PF05159 Capsule_synth: Capsul 26.0 42 0.0009 22.8 1.3 18 34-51 218-235 (269)
31 TIGR02961 allantoicase allanto 25.0 44 0.00095 25.5 1.4 15 11-25 7-21 (322)
32 smart00539 NIDO Extracellular 24.5 1.1E+02 0.0023 20.4 3.0 29 4-36 69-97 (152)
33 PF03561 Allantoicase: Allanto 24.2 46 0.001 22.5 1.3 10 16-25 2-11 (152)
34 PF11886 DUF3406: Domain of un 21.5 68 0.0015 24.3 1.8 21 30-50 132-152 (273)
35 TIGR00013 taut 4-oxalocrotonat 21.3 31 0.00068 18.5 -0.0 15 23-37 44-58 (63)
36 PRK11170 nagA N-acetylglucosam 21.0 1.5E+02 0.0033 22.0 3.5 26 16-41 266-296 (382)
37 TIGR01554 major_cap_HK97 phage 20.7 1.1E+02 0.0023 22.2 2.6 29 11-42 298-327 (378)
38 COG2986 HutH Histidine ammonia 20.5 26 0.00055 28.5 -0.6 28 17-52 305-335 (498)
39 COG2764 PhnB Uncharacterized p 20.5 2.4E+02 0.0051 18.7 4.1 33 7-39 48-81 (136)
40 cd05472 cnd41_like Chloroplast 20.4 64 0.0014 22.0 1.4 18 36-53 269-286 (299)
41 PRK10148 hypothetical protein; 20.4 2.5E+02 0.0054 18.0 4.6 36 7-42 59-94 (147)
42 PHA02146 hypothetical protein 20.2 38 0.00083 21.8 0.2 10 22-31 54-63 (86)
43 PRK13257 allantoicase; Provisi 20.1 66 0.0014 24.8 1.5 15 11-25 22-36 (336)
No 1
>cd01175 IPT_COE IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved in the regulation of the early stages of B-cell differentiation, Drosophila collier is a regulator of the head patterning, and a related protein in Xenopus is involved in primary neurogenesis. All COE family members have a well conserved DNA binding domain that contains an atypical Zn finger motif. The function of the IPT domain is unknown.
Probab=99.73 E-value=2.3e-18 Score=109.54 Aligned_cols=34 Identities=94% Similarity=1.653 Sum_probs=33.5
Q ss_pred CCCCceecCeEEEEecCccccceeeEEeeeEeeC
Q psy14529 26 PSEGWTSGGATVIIVGDNFFDGLQVVFGTMLVWS 59 (59)
Q Consensus 26 pseGW~tgG~tViiiG~nFf~GLqvvfG~~lvws 59 (59)
|+|||++||++|+|+|||||+||||+||++.+|+
T Consensus 8 P~eG~~tGGt~VtI~GenF~~gl~V~FG~~~~w~ 41 (85)
T cd01175 8 PSEGWTTGGATVIIIGDNFFDGLQVVFGTMLVWS 41 (85)
T ss_pred CCCCcccCCeEEEEECCCCCCCcEEEECCEeEEE
Confidence 9999999999999999999999999999999996
No 2
>KOG3836|consensus
Probab=98.49 E-value=4.6e-08 Score=78.26 Aligned_cols=53 Identities=32% Similarity=0.232 Sum_probs=50.8
Q ss_pred CceEEEEEEeeeccCCceEEEecCC-------------------------------------------------------
Q psy14529 1 MRRFQVVISTQVGVDGPLLAVSDNI------------------------------------------------------- 25 (59)
Q Consensus 1 mRrfqV~vstt~~vdg~~LavSDnm------------------------------------------------------- 25 (59)
|||||+.+.+.+.+++..++.+|+|
T Consensus 248 ~~~~Q~~i~~~~~v~~~g~n~~~~als~~~~~~s~~~~~l~~~d~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~ 327 (605)
T KOG3836|consen 248 MRRFQVLINGGVEVTLLGANFKDIALSTQCSEESTMVNYLPPSDNPGSVSVSITDPSETSDSNNSNSSPPTSSSTKAIFT 327 (605)
T ss_pred cccccccccccceecccccchhhhhhcccccccccceeeccccccCCCceeeeccccccccccccccCCccCCCccccee
Confidence 7999999999999999999999988
Q ss_pred --CCCCceecCeEEEEecCccccceeeEEe
Q psy14529 26 --PSEGWTSGGATVIIVGDNFFDGLQVVFG 53 (59)
Q Consensus 26 --pseGW~tgG~tViiiG~nFf~GLqvvfG 53 (59)
|++||..||..+.|+|.|||.||++.||
T Consensus 328 yvp~t~~q~~~~al~ivg~n~~~~l~~a~~ 357 (605)
T KOG3836|consen 328 YVPSTDRQLIEYALQIVGLNMNGKLEDARN 357 (605)
T ss_pred eecCCCceeeeeEEEEecccccCchhhhcC
Confidence 9999999999999999999999999998
No 3
>KOG3836|consensus
Probab=97.90 E-value=4.3e-06 Score=67.22 Aligned_cols=59 Identities=19% Similarity=0.088 Sum_probs=54.4
Q ss_pred CceEEEEEEe-eeccCCceEEEecCC-----------------------------------------CCCCceecCeEEE
Q psy14529 1 MRRFQVVIST-QVGVDGPLLAVSDNI-----------------------------------------PSEGWTSGGATVI 38 (59)
Q Consensus 1 mRrfqV~vst-t~~vdg~~LavSDnm-----------------------------------------pseGW~tgG~tVi 38 (59)
|+++|..+++ .+....+.|+++|++ |++.|..++.+..
T Consensus 9 ~~~iq~~l~~~~~~~~~~~l~~~~~n~l~~~v~n~~~~pld~~~~~l~~v~t~~~~~~~v~~~~~~~~~~ahfek~~p~~ 88 (605)
T KOG3836|consen 9 IASIQGPLHRHVVFGRKEPLRTVYANPLDNIVINPQQLPLDLEVIGLPKVSTPRKNEFIVFNSKQLFPIRAHFEKDLPTR 88 (605)
T ss_pred hhhccCccccCccccCCCcccchhcccccccccCcccccCChhhhccccccCcccccccccccccccchhhhcccCCCcc
Confidence 6789999999 899999999999998 6788888999999
Q ss_pred EecCccccceeeEEeeeEeeC
Q psy14529 39 IVGDNFFDGLQVVFGTMLVWS 59 (59)
Q Consensus 39 iiG~nFf~GLqvvfG~~lvws 59 (59)
|+++|||+++|.+|+.|++|+
T Consensus 89 l~~~nffH~~~~~F~~m~ly~ 109 (605)
T KOG3836|consen 89 LVCYNFFHKAQNGFVVMALYK 109 (605)
T ss_pred ccccceecccccceEEEEeec
Confidence 999999999999999999985
No 4
>cd00603 IPT_PCSR IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup contains IPT domains of plexins, receptors, like the plasminogen-related growth factor receptors, the hepatocyte growth factor-scatter factors, and the macrophage-stimulating receptors and of fibrocystin. Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT_PCSR domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=97.48 E-value=0.00014 Score=42.15 Aligned_cols=31 Identities=39% Similarity=0.621 Sum_probs=28.6
Q ss_pred CCCCceecCeEEEEecCccccc---eeeEEeeeE
Q psy14529 26 PSEGWTSGGATVIIVGDNFFDG---LQVVFGTML 56 (59)
Q Consensus 26 pseGW~tgG~tViiiG~nFf~G---LqvvfG~~l 56 (59)
|+.|+..||+.|.|.|.||.+. ++|.||...
T Consensus 8 P~~g~~~Ggt~vtI~G~~f~~~~~~~~V~ig~~~ 41 (90)
T cd00603 8 PSSGPLSGGTRLTITGSNLGSGSPRVRVTVGGVP 41 (90)
T ss_pred CCCCCCCCCeEEEEEEECCCCCCceEEEEECCEE
Confidence 9999999999999999999998 899998753
No 5
>cd00102 IPT Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor receptors), as well as, cyclodextrin glycosyltransferase and similar enzymes. Although they are involved in DNA binding in transcription factors, their function in other proteins is unknown. In these transcription factors, IPTs form homo- or heterodimers with the exception of the nuclear factor of activated Tcells (NFAT) transcription factors which are mainly monomers.
Probab=97.40 E-value=0.0002 Score=40.57 Aligned_cols=30 Identities=53% Similarity=0.856 Sum_probs=28.0
Q ss_pred CCCCceecCeEEEEecCccccc--eeeEE-eee
Q psy14529 26 PSEGWTSGGATVIIVGDNFFDG--LQVVF-GTM 55 (59)
Q Consensus 26 pseGW~tgG~tViiiG~nFf~G--Lqvvf-G~~ 55 (59)
|..|...||+.|.|.|+||-++ .+|.| |..
T Consensus 8 P~~g~~~GGt~itI~G~~f~~~~~~~v~~~g~~ 40 (89)
T cd00102 8 PSSGPVSGGTEVTITGSNFGSGSNLRVTFGGGV 40 (89)
T ss_pred CCcCCCCCCeEEEEEEECCCCCCcEEEEEeCCC
Confidence 9999999999999999999999 99999 654
No 6
>PF01833 TIG: IPT/TIG domain; InterPro: IPR002909 This family consists of a domain that has an immunoglobulin like fold. These domains are found in cell surface receptors such as Met and Ron as well as in intracellular transcription factors where it is involved in DNA binding. The Ron tyrosine kinase receptor shares with the members of its subfamily (Met and Sea) a unique functional feature: the control of cell dissociation, motility, and invasion of extracellular matrices (scattering) [].; GO: 0005515 protein binding; PDB: 3HRP_A 1UAD_D 3MLP_E 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A 7CGT_A 1CGU_A ....
Probab=96.97 E-value=0.00046 Score=38.32 Aligned_cols=32 Identities=34% Similarity=0.611 Sum_probs=29.3
Q ss_pred CCCCceecCeEEEEecCcc---ccceeeEEeeeEe
Q psy14529 26 PSEGWTSGGATVIIVGDNF---FDGLQVVFGTMLV 57 (59)
Q Consensus 26 pseGW~tgG~tViiiG~nF---f~GLqvvfG~~lv 57 (59)
|+.|+..||..|.|.|.|| -+-+++.||....
T Consensus 8 P~~~~~~gg~~ItI~G~~f~~~~~~~~v~i~~~~~ 42 (85)
T PF01833_consen 8 PNSGSISGGTNITITGSNFGSNSSNISVKIGGSQC 42 (85)
T ss_dssp SSEEETTCTSEEEEEEESSESSSTTEEEEETTEEE
T ss_pred CCeEecCCCEEEEEEEEeecccCCceEEEECCEee
Confidence 9999999999999999999 8899999987653
No 7
>smart00429 IPT ig-like, plexins, transcription factors.
Probab=96.45 E-value=0.0035 Score=36.16 Aligned_cols=28 Identities=29% Similarity=0.426 Sum_probs=24.9
Q ss_pred CCCCceecCeEEEEecCccccceeeEEe
Q psy14529 26 PSEGWTSGGATVIIVGDNFFDGLQVVFG 53 (59)
Q Consensus 26 pseGW~tgG~tViiiG~nFf~GLqvvfG 53 (59)
|+.|+..||+.|+|.|.||-++-++.+.
T Consensus 9 P~~g~~~GGt~iti~G~nf~~~~~~~~~ 36 (90)
T smart00429 9 PTSGPVSGGTEITLCGKNLDSISVVFVE 36 (90)
T ss_pred cCcCcCCCCeEEEEeeecCCcceEEEEE
Confidence 9999999999999999999887776553
No 8
>cd01179 IPT_plexin_repeat2 Second repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=96.40 E-value=0.0045 Score=36.55 Aligned_cols=30 Identities=37% Similarity=0.606 Sum_probs=27.3
Q ss_pred CCCCceecCeEEEEecCccccc--eeeEEeee
Q psy14529 26 PSEGWTSGGATVIIVGDNFFDG--LQVVFGTM 55 (59)
Q Consensus 26 pseGW~tgG~tViiiG~nFf~G--LqvvfG~~ 55 (59)
|++|=..||++|.|.|.||-++ .+|.||..
T Consensus 8 P~~Gp~~GGT~vtI~G~~~~~~~~~~V~ig~~ 39 (85)
T cd01179 8 PSYGPQSGGTRLTITGKHLNAGSSVRVTVGGQ 39 (85)
T ss_pred CCCCCCCCCEEEEEEEECCCCCCeEEEEECCe
Confidence 9999999999999999999888 77888865
No 9
>cd01180 IPT_plexin_repeat1 First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=93.94 E-value=0.074 Score=32.11 Aligned_cols=30 Identities=30% Similarity=0.372 Sum_probs=26.2
Q ss_pred CCCCceecCeEEEEecCccccc-----eeeEEeee
Q psy14529 26 PSEGWTSGGATVIIVGDNFFDG-----LQVVFGTM 55 (59)
Q Consensus 26 pseGW~tgG~tViiiG~nFf~G-----LqvvfG~~ 55 (59)
|..|=..||+.|+|-|.||-.+ .+|.+|..
T Consensus 8 P~~Gp~~GGT~vTI~G~nl~~~~~~~~~~V~ig~~ 42 (94)
T cd01180 8 PLSGPLEGGTRLTICGSNLGLRKNDVRHGVRVGGV 42 (94)
T ss_pred CCCCCCCCCEEEEEEEEcCCCCcccceeEEEECCE
Confidence 9999999999999999999988 46777754
No 10
>cd01178 IPT_NFAT IPT domain of the NFAT family of transcription factors. NFAT transcription complexes are a target of calcineurin, a calcium dependent phosphatase, and activate genes mainly involved in cell-cell-interaction.
Probab=88.12 E-value=0.63 Score=30.21 Aligned_cols=28 Identities=29% Similarity=0.572 Sum_probs=25.0
Q ss_pred CCCceecCeEEEEecCccccceeeEEee
Q psy14529 27 SEGWTSGGATVIIVGDNFFDGLQVVFGT 54 (59)
Q Consensus 27 seGW~tgG~tViiiG~nFf~GLqvvfG~ 54 (59)
+.|-..||..++++||||-...+|+|--
T Consensus 10 ~s~sv~GG~Ev~Ll~~k~~kDikV~F~E 37 (101)
T cd01178 10 NSCSVNGGEELFLTGKNFLKDSKVVFQE 37 (101)
T ss_pred CceeecCCCEEEEEehhcCCCCEEEEEE
Confidence 4566899999999999999999999974
No 11
>cd00602 IPT_TF IPT domain of eukaryotic transcription factors NF-kappaB/Rel, nuclear factor of activated Tcells (NFAT), and recombination signal J-kappa binding protein (RBP-Jkappa). The IPT domains in these proteins are involved in DNA binding. Most NF-kappaB/Rel proteins form homo- and heterodimers, while NFAT proteins are largely monomeric (with TonEBP being an exception). While the majority of sequence-specific DNA binding elements are found in the N-terminal domain, several are found in the IPT domain in loops adjacent to, and including, the linker region.
Probab=86.48 E-value=0.89 Score=28.94 Aligned_cols=28 Identities=29% Similarity=0.522 Sum_probs=24.3
Q ss_pred CCCceecCeEEEEecCcccc-ceeeEEee
Q psy14529 27 SEGWTSGGATVIIVGDNFFD-GLQVVFGT 54 (59)
Q Consensus 27 seGW~tgG~tViiiG~nFf~-GLqvvfG~ 54 (59)
.+|-..||..++++++||-- .++|.|+.
T Consensus 9 ~s~~~~GG~ev~Ll~~k~~k~dikV~F~e 37 (101)
T cd00602 9 LSGSVNGGDEVFLLCDKVNKPDIKVWFGE 37 (101)
T ss_pred CeeEcCCCcEEEEEecCCCCCCCEEEEEe
Confidence 35666799999999999866 99999997
No 12
>cd01176 IPT_RBP-Jkappa IPT domain of the recombination signal Jkappa binding protein (RBP-Jkappa). RBP-J kappa, was initially considered to be involved in V(D)J recombination because of its DNA binding specificity and structural similarity to site-specific recombinases known as the integrase family. Further studies indicated that RBP-J kappa functions as a repressor of transcription, via destabilization of the general transcription factor IID and recruitment of histone deacetylase complexes.
Probab=83.30 E-value=1.2 Score=29.25 Aligned_cols=22 Identities=36% Similarity=0.576 Sum_probs=19.6
Q ss_pred eEEEEecCccccceeeEEeeeE
Q psy14529 35 ATVIIVGDNFFDGLQVVFGTML 56 (59)
Q Consensus 35 ~tViiiG~nFf~GLqvvfG~~l 56 (59)
+.+-+.||||-..|+|-||...
T Consensus 20 amlEl~GenF~pnLkVWFG~ve 41 (97)
T cd01176 20 AMLELHGENFTPNLKVWFGDVE 41 (97)
T ss_pred EEEEEecCcCCCCceEEECCcc
Confidence 6778899999999999999764
No 13
>cd01181 IPT_plexin_repeat3 Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=79.28 E-value=1.7 Score=26.76 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.6
Q ss_pred CCCCceecCeEEEEecCccccce
Q psy14529 26 PSEGWTSGGATVIIVGDNFFDGL 48 (59)
Q Consensus 26 pseGW~tgG~tViiiG~nFf~GL 48 (59)
|+.|-..||+++.|.|-||-.|-
T Consensus 8 P~~g~~SGGt~itV~G~~Lds~q 30 (99)
T cd01181 8 PEWSFLSGGTPITVTGTNLNTVQ 30 (99)
T ss_pred cCCCccCCCEEEEEEeeccCccc
Confidence 89999999999999999996554
No 14
>cd01177 IPT_NFkappaB IPT domain of the transcription factor NFkappaB and related transcription factors. NFkappaB is considered a central regulator of stress responses, activated by different stressful conditions, including physical stress, oxidative stress, and exposure to certain chemicals. NFkappaB blocking cell apoptosis in several cell types, gives it an important role in cell proliferation and differentiation.
Probab=69.35 E-value=6.8 Score=25.59 Aligned_cols=29 Identities=28% Similarity=0.410 Sum_probs=25.0
Q ss_pred CCCceecCeEEEEecCccc-cceeeEEeee
Q psy14529 27 SEGWTSGGATVIIVGDNFF-DGLQVVFGTM 55 (59)
Q Consensus 27 seGW~tgG~tViiiG~nFf-~GLqvvfG~~ 55 (59)
..|-..||..|++++|++= ++.||.|-..
T Consensus 9 ~sgsv~GG~Ev~LLcdKV~K~dI~VrF~e~ 38 (102)
T cd01177 9 TSGSVKGGDEVYLLCDKVQKEDIQVRFFEE 38 (102)
T ss_pred cccccCCCcEEEEEecccCCCCCEEEEEEc
Confidence 4577899999999999998 5899999754
No 15
>cd00604 IPT_CGTD IPT domain (domain D) of cyclodextrin glycosyltransferase (CGTase) and similar enzymes. These enzymes are involved in the enzymatic hydrolysis of alpha-1,4 linkages of starch polymers and belong to the glycosyl hydrolase family 13. Most consist of three domains (A,B,C) but CGTase is more complex and has two additional domains (D,E). The function of the IPT/D domain is unknown.
Probab=68.77 E-value=5.6 Score=23.97 Aligned_cols=22 Identities=45% Similarity=0.652 Sum_probs=18.8
Q ss_pred CeEEEEecCcccc-ceeeEEeee
Q psy14529 34 GATVIIVGDNFFD-GLQVVFGTM 55 (59)
Q Consensus 34 G~tViiiG~nFf~-GLqvvfG~~ 55 (59)
|.+|.|.|.+|=+ --+|.||..
T Consensus 14 G~~VtI~G~gFg~~~~~V~~g~~ 36 (81)
T cd00604 14 GNTVTISGEGFGSTGGTVYFGGT 36 (81)
T ss_pred CCEEEEEEECCCCCccEEEECCE
Confidence 8999999999976 468999875
No 16
>cd02849 CGTase_C_term Cgtase (cyclodextrin glycosyltransferase) C-terminus domain. Enzymes such as amylases, cyclomaltodextrinase (CDase), and CGTase degrade starch to smaller oligosaccharides by hydrolyzing the alpha-D-(1,4) linkages between glucose residues present in starch. In the case of CGTases, an additional cyclization reaction is catalyzed yielding mixtures of cyclic oligosaccharides which are referred to as alpha-, beta-, or gamma-cyclodextrins (CDs) (consisting of six, seven, or eight glucoses, respectively). CGTases are characterized as depending on the major product of the cyclization reaction. Besides having similar catalytic site residues, amylases and CGTases contain carbohydrate binding domains that are distant from the active site and which are implicated in attaching the enzyme to raw starch granules and in guiding the amylose chain into the active site. The C-terminus of CGTase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These d
Probab=64.87 E-value=7.4 Score=23.43 Aligned_cols=22 Identities=45% Similarity=0.570 Sum_probs=18.7
Q ss_pred CeEEEEecCccc-cceeeEEeee
Q psy14529 34 GATVIIVGDNFF-DGLQVVFGTM 55 (59)
Q Consensus 34 G~tViiiG~nFf-~GLqvvfG~~ 55 (59)
|.+|.|.|.+|= +-.+|.||..
T Consensus 16 G~~VtI~G~gFg~~~~~V~~g~~ 38 (81)
T cd02849 16 GNTVTISGEGFGSAPGTVYFGTT 38 (81)
T ss_pred CCEEEEEEECCCCCCcEEEECCE
Confidence 889999999997 4468999975
No 17
>PF03525 Meiotic_rec114: Meiotic recombination protein rec114; InterPro: IPR004354 REC114 is one of 10 genes required for initiation of meiotic recombination in Saccharomyces cerevisiae []. Located on chromosome XIII, it is transcribed only in meiosis and has no detectable function in mitosis []. REC114 has been shown to possess an intron and is one of only three genes in yeast with 3' introns []. The 3' splice site utilised in REC114 is a very rare AAG sequence - only three other genes in yeast use this non- consensus sequence []. It appears that the intron is not essential for expression of REC114 and is not absolutely required for meiotic function. Nevertheless, it is conserved in evolution - two other species of yeast contain an intron at the same location in their REC114 genes []. ; GO: 0007131 reciprocal meiotic recombination
Probab=64.29 E-value=2.8 Score=32.29 Aligned_cols=11 Identities=55% Similarity=0.812 Sum_probs=9.3
Q ss_pred CceEEEEEEee
Q psy14529 1 MRRFQVVISTQ 11 (59)
Q Consensus 1 mRrfqV~vstt 11 (59)
||||||...+-
T Consensus 96 mrRFQV~F~n~ 106 (328)
T PF03525_consen 96 MRRFQVGFNND 106 (328)
T ss_pred EEEEEEecCCh
Confidence 89999998764
No 18
>PF13734 Inhibitor_I69: Spi protease inhibitor; PDB: 1PVJ_A 1DKI_D 2UZJ_A 2JTC_A 4D8E_A 4D8I_A 4D8B_A.
Probab=48.69 E-value=19 Score=22.75 Aligned_cols=18 Identities=44% Similarity=0.645 Sum_probs=11.9
Q ss_pred EEEEeeeccCCceEEEecC
Q psy14529 6 VVISTQVGVDGPLLAVSDN 24 (59)
Q Consensus 6 V~vstt~~vdg~~LavSDn 24 (59)
|+||.-.+ -++|||.||+
T Consensus 54 VIVSgDdr-~~~ILaYS~~ 71 (96)
T PF13734_consen 54 VIVSGDDR-MGPILAYSDE 71 (96)
T ss_dssp EEEESBTT-S-SEEEEESS
T ss_pred EEEECCCC-ccceeEEcCC
Confidence 45555444 4599999997
No 19
>PRK11700 hypothetical protein; Provisional
Probab=46.43 E-value=8.5 Score=27.48 Aligned_cols=7 Identities=57% Similarity=1.498 Sum_probs=5.5
Q ss_pred CCCCcee
Q psy14529 26 PSEGWTS 32 (59)
Q Consensus 26 pseGW~t 32 (59)
|-|||+.
T Consensus 107 p~eGWEH 113 (187)
T PRK11700 107 PHEGWEH 113 (187)
T ss_pred CCCCceE
Confidence 8899953
No 20
>KOG0813|consensus
Probab=43.39 E-value=42 Score=24.89 Aligned_cols=41 Identities=24% Similarity=0.313 Sum_probs=31.8
Q ss_pred EEEeeeccCCceE-EEecCCCCCCceecCeEEEEecCc-cccce
Q psy14529 7 VISTQVGVDGPLL-AVSDNIPSEGWTSGGATVIIVGDN-FFDGL 48 (59)
Q Consensus 7 ~vstt~~vdg~~L-avSDnmpseGW~tgG~tViiiG~n-Ff~GL 48 (59)
++.|.--.+||+. .+.+ -++|+-.--|-++...|++ ||+|+
T Consensus 111 ~l~TPgHT~~hi~~~~~~-~~~e~~iFtGDtlf~~GcG~~FEgt 153 (265)
T KOG0813|consen 111 CLHTPGHTAGHICYYVTE-STGERAIFTGDTLFGAGCGRFFEGT 153 (265)
T ss_pred EEeCCCccCCcEEEEeec-CCCCCeEEeCCceeecCccchhcCC
Confidence 4566666777764 3333 6889999999999999996 99986
No 21
>PF04448 DUF551: Protein of unknown function (DUF551) ; InterPro: IPR007539 This entry represents the C terminus of a protein of unknown function, found in dsDNA viruses with no RNA stage, including bacteriophages lambda and P22, and also in some Escherichia coli prophages.
Probab=43.39 E-value=14 Score=20.11 Aligned_cols=17 Identities=35% Similarity=0.776 Sum_probs=13.1
Q ss_pred EEEecCCCCCCceecCeEEEEe
Q psy14529 19 LAVSDNIPSEGWTSGGATVIIV 40 (59)
Q Consensus 19 LavSDnmpseGW~tgG~tViii 40 (59)
++|||-||.++ ..|++.
T Consensus 3 IsvserlPe~~-----~~Vlv~ 19 (69)
T PF04448_consen 3 ISVSERLPEEG-----EYVLVY 19 (69)
T ss_pred eEccccCCCCC-----CeEEEE
Confidence 68999999875 466666
No 22
>cd01819 Patatin_and_cPLA2 Patatins and Phospholipases. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates. This family also includes the catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms.
Probab=39.57 E-value=26 Score=22.37 Aligned_cols=20 Identities=55% Similarity=0.953 Sum_probs=14.5
Q ss_pred cCCceEEEecCCCCC-----CceecCeEEEE
Q psy14529 14 VDGPLLAVSDNIPSE-----GWTSGGATVII 39 (59)
Q Consensus 14 vdg~~LavSDnmpse-----GW~tgG~tVii 39 (59)
+|| +++||+|.+ +. |.++||
T Consensus 129 VDG---G~~~~iP~~~~~~~~r---~~~vii 153 (155)
T cd01819 129 VDG---GVSNNLPAPVLLRPGR---GVTLTI 153 (155)
T ss_pred ecc---ceecCcCCcccccCCC---CCeEEe
Confidence 455 789999876 65 677765
No 23
>KOG0179|consensus
Probab=37.65 E-value=21 Score=26.57 Aligned_cols=13 Identities=54% Similarity=1.086 Sum_probs=12.1
Q ss_pred ecCeEEEEecCcc
Q psy14529 32 SGGATVIIVGDNF 44 (59)
Q Consensus 32 tgG~tViiiG~nF 44 (59)
-||++|.|.||+|
T Consensus 28 NGGT~vaIaG~dF 40 (235)
T KOG0179|consen 28 NGGTTVAIAGEDF 40 (235)
T ss_pred CCceEEEEcCCce
Confidence 4899999999999
No 24
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=37.36 E-value=17 Score=28.13 Aligned_cols=42 Identities=17% Similarity=0.349 Sum_probs=26.7
Q ss_pred EEEEEEeeeccCCc--eEEEecC-------------C----CCCCceecCeEEEEecCcccccee
Q psy14529 4 FQVVISTQVGVDGP--LLAVSDN-------------I----PSEGWTSGGATVIIVGDNFFDGLQ 49 (59)
Q Consensus 4 fqV~vstt~~vdg~--~LavSDn-------------m----pseGW~tgG~tViiiG~nFf~GLq 49 (59)
|-+...++..++|. ++++-|= | -.++- .=|+-.||||++|+.
T Consensus 13 ~~~~~~~~~~~~~~l~F~~vGDwG~g~~~Q~~VA~~M~~~~~~~~~----~FVls~GDNF~~Gv~ 73 (394)
T PTZ00422 13 FVLIFISSYSVKAQLRFASLGNWGTGSKQQKLVASYLKQYAKNERV----TFLVSPGSNFPGGVD 73 (394)
T ss_pred hheeEEeecccCCeEEEEEEecCCCCchhHHHHHHHHHHHHHhCCC----CEEEECCccccCCCC
Confidence 34555666777776 6777771 1 11111 457889999999976
No 25
>PLN02199 shikimate kinase
Probab=37.08 E-value=19 Score=27.08 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=16.3
Q ss_pred ceEEEEEEee---------eccCCceEEEecCCCC
Q psy14529 2 RRFQVVISTQ---------VGVDGPLLAVSDNIPS 27 (59)
Q Consensus 2 RrfqV~vstt---------~~vdg~~LavSDnmps 27 (59)
+||||++|+. .+.-..-.++|||.|+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (303)
T PLN02199 39 RRFRGLSLARLQPERRNDQRRAVSPAVSCSDNNSS 73 (303)
T ss_pred cceeEEEeccccccccchhhhccccccccCCCCch
Confidence 5899999992 1122223567888854
No 26
>PF06007 PhnJ: Phosphonate metabolism protein PhnJ; InterPro: IPR010306 This family consists of several bacterial phosphonate metabolism (PhnJ) sequences. The exact role that PhnJ plays in phosphonate utilisation is unknown.; GO: 0042916 alkylphosphonate transport
Probab=31.77 E-value=32 Score=26.24 Aligned_cols=22 Identities=36% Similarity=0.965 Sum_probs=15.8
Q ss_pred ecCCC-CCCceecCeEEE--EecCc
Q psy14529 22 SDNIP-SEGWTSGGATVI--IVGDN 43 (59)
Q Consensus 22 SDnmp-seGW~tgG~tVi--iiG~n 43 (59)
|-.|| +.||-|||-+|+ +||.+
T Consensus 36 SREMP~~~GWGTGGlQvT~sliG~~ 60 (277)
T PF06007_consen 36 SREMPMPRGWGTGGLQVTLSLIGPD 60 (277)
T ss_pred cccCccccccccCceeEEEEeecCC
Confidence 45565 789999998876 45543
No 27
>KOG3374|consensus
Probab=31.60 E-value=39 Score=24.83 Aligned_cols=23 Identities=35% Similarity=0.627 Sum_probs=17.9
Q ss_pred EEEeeeccCC----ceEEEecCCCCCC
Q psy14529 7 VISTQVGVDG----PLLAVSDNIPSEG 29 (59)
Q Consensus 7 ~vstt~~vdg----~~LavSDnmpseG 29 (59)
.+||..+|.| .++++||..|+.|
T Consensus 62 TlSt~e~vkG~Pf~nViS~sDg~p~~g 88 (210)
T KOG3374|consen 62 TLSTNERVKGYPFVNVISISDGDPNNG 88 (210)
T ss_pred eeeecccccCCccceEEEccCCCCcCC
Confidence 3566676665 6899999999888
No 28
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=30.42 E-value=77 Score=17.90 Aligned_cols=18 Identities=39% Similarity=0.761 Sum_probs=8.5
Q ss_pred EEEecCCCCCCce--ecCeEE
Q psy14529 19 LAVSDNIPSEGWT--SGGATV 37 (59)
Q Consensus 19 LavSDnmpseGW~--tgG~tV 37 (59)
+.++-+. ++||+ .++.++
T Consensus 24 v~~~l~~-P~GW~~~~~~~~~ 43 (78)
T PF10633_consen 24 VSLSLSL-PEGWTVSASPASV 43 (78)
T ss_dssp -EEEEE---TTSE---EEEEE
T ss_pred EEEEEeC-CCCccccCCcccc
Confidence 4455454 59998 444443
No 29
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=26.69 E-value=28 Score=24.13 Aligned_cols=7 Identities=57% Similarity=1.517 Sum_probs=5.6
Q ss_pred CCCCcee
Q psy14529 26 PSEGWTS 32 (59)
Q Consensus 26 pseGW~t 32 (59)
|-|||+.
T Consensus 69 p~eGWEH 75 (149)
T cd07268 69 PQEGWEH 75 (149)
T ss_pred CCCCceE
Confidence 8899953
No 30
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=25.98 E-value=42 Score=22.82 Aligned_cols=18 Identities=33% Similarity=0.767 Sum_probs=15.3
Q ss_pred CeEEEEecCccccceeeE
Q psy14529 34 GATVIIVGDNFFDGLQVV 51 (59)
Q Consensus 34 G~tViiiG~nFf~GLqvv 51 (59)
|..|++.|+.||+|.-+.
T Consensus 218 gkpVi~~G~~~Y~~~glt 235 (269)
T PF05159_consen 218 GKPVIVFGRAFYAGWGLT 235 (269)
T ss_pred CCceEEecCcccCCCCcc
Confidence 789999999999986553
No 31
>TIGR02961 allantoicase allantoicase. A different but similarly named enzyme, allantoate amidohydrolase (EC 3.5.3.9), simultaneously breaks down the urea to ammonia and carbon dioxide.
Probab=25.03 E-value=44 Score=25.54 Aligned_cols=15 Identities=27% Similarity=0.406 Sum_probs=12.1
Q ss_pred eeccCCceEEEecCC
Q psy14529 11 QVGVDGPLLAVSDNI 25 (59)
Q Consensus 11 t~~vdg~~LavSDnm 25 (59)
+...-|++|++||.-
T Consensus 7 ~~~~Gg~vl~~sDe~ 21 (322)
T TIGR02961 7 DRRLGGKVLFASDEF 21 (322)
T ss_pred hhhcCCEEEEEccch
Confidence 456789999999865
No 32
>smart00539 NIDO Extracellular domain of unknown function in nidogen (entactin) and hypothetical proteins.
Probab=24.49 E-value=1.1e+02 Score=20.38 Aligned_cols=29 Identities=38% Similarity=0.513 Sum_probs=17.0
Q ss_pred EEEEEEeeeccCCceEEEecCCCCCCceecCeE
Q psy14529 4 FQVVISTQVGVDGPLLAVSDNIPSEGWTSGGAT 36 (59)
Q Consensus 4 fqV~vstt~~vdg~~LavSDnmpseGW~tgG~t 36 (59)
||+|+.|. |.-.=+-=|-|..||+++.++
T Consensus 69 FQ~VL~td----g~~sfa~f~Y~~~~~~~~~~~ 97 (152)
T smart00539 69 FQAVLATD----GSRTYAIFLYPSLGWTSDTTA 97 (152)
T ss_pred eEEEEEEC----CCceEEEEEecCCCceeeccc
Confidence 89998883 221111122299999876543
No 33
>PF03561 Allantoicase: Allantoicase repeat; InterPro: IPR015908 Allantoicase (also known as allantoate amidinohydrolase) is involved in purine degradation, facilitating the utilization of purines as secondary nitrogen sources under nitrogen-limiting conditions. While purine degradation converges to uric acid in all vertebrates, its further degradation varies from species to species. Uric acid is excreted by birds, reptiles, and some mammals that do not have a functional uricase gene, whereas other mammals produce allantoin. Amphibians and microorganisms produce ammonia and carbon dioxide using the uricolytic pathway. Allantoicase performs the second step in this pathway catalyzing the conversion of allantoate into ureidoglycolate and urea. allantoate + H(2)0 = (S)-ureidoglycolate + urea The structure of allantoicase is best described as being composed of two repeats (the allantoicase repeats: AR1 and AR2), which are connected by a flexible linker. The crystal structure, resolved at 2.4A resolution, reveals that AR1 has a very similar fold to AR2, both repeats being jelly-roll motifs, composed of four-stranded and five-stranded antiparallel beta-sheets []. Each jelly-roll motif has two conserved surface patches that probably constitute the active site []. The mammalian proteins matched by this entry are thought to be non-functional as mammals do not appear to possess allantoicase activity [].; GO: 0004037 allantoicase activity; PDB: 1O59_A 1SG3_A.
Probab=24.20 E-value=46 Score=22.54 Aligned_cols=10 Identities=40% Similarity=0.684 Sum_probs=4.9
Q ss_pred CceEEEecCC
Q psy14529 16 GPLLAVSDNI 25 (59)
Q Consensus 16 g~~LavSDnm 25 (59)
|.++++||.-
T Consensus 2 g~vv~~SD~~ 11 (152)
T PF03561_consen 2 GRVVACSDEF 11 (152)
T ss_dssp -EEEEES--S
T ss_pred CEEEEEcccc
Confidence 5677787743
No 34
>PF11886 DUF3406: Domain of unknown function (DUF3406); InterPro: IPR024283 This C-terminal domain is found in chloroplast protein import component Toc86/159 [] and homologue Toc90 [], and in some uncharacterised proteins.
Probab=21.48 E-value=68 Score=24.33 Aligned_cols=21 Identities=38% Similarity=0.640 Sum_probs=18.2
Q ss_pred ceecCeEEEEecCccccceee
Q psy14529 30 WTSGGATVIIVGDNFFDGLQV 50 (59)
Q Consensus 30 W~tgG~tViiiG~nFf~GLqv 50 (59)
=|++|-+++.+|++.+-|+.+
T Consensus 132 kt~~G~S~T~lG~~~~~G~Kl 152 (273)
T PF11886_consen 132 KTTAGLSVTFLGDNVATGLKL 152 (273)
T ss_pred cccceeEEEEecCeEEEEEee
Confidence 378999999999999999853
No 35
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=21.25 E-value=31 Score=18.51 Aligned_cols=15 Identities=33% Similarity=0.747 Sum_probs=12.1
Q ss_pred cCCCCCCceecCeEE
Q psy14529 23 DNIPSEGWTSGGATV 37 (59)
Q Consensus 23 DnmpseGW~tgG~tV 37 (59)
+.+|.|-|-.||.++
T Consensus 44 ~e~~~~~w~~gG~~~ 58 (63)
T TIGR00013 44 DEMPKNNYGIGGELV 58 (63)
T ss_pred EEcCHHHeeECCEEh
Confidence 344999999999875
No 36
>PRK11170 nagA N-acetylglucosamine-6-phosphate deacetylase; Provisional
Probab=21.02 E-value=1.5e+02 Score=21.97 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=19.7
Q ss_pred CceEEEecCC-----CCCCceecCeEEEEec
Q psy14529 16 GPLLAVSDNI-----PSEGWTSGGATVIIVG 41 (59)
Q Consensus 16 g~~LavSDnm-----pseGW~tgG~tViiiG 41 (59)
.+++.|||.| |..-..-||..|.+-+
T Consensus 266 ~~~~lvtDa~~~~G~~~g~y~l~~~~v~v~~ 296 (382)
T PRK11170 266 DKLCLVTDATAPAGANIEQFIFAGKTIYYRD 296 (382)
T ss_pred CcEEEEeccccCCCCCCCeEEECCEEEEEEC
Confidence 4689999999 5566777888887544
No 37
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=20.75 E-value=1.1e+02 Score=22.21 Aligned_cols=29 Identities=17% Similarity=0.296 Sum_probs=20.5
Q ss_pred eeccCCceEEEec-CCCCCCceecCeEEEEecC
Q psy14529 11 QVGVDGPLLAVSD-NIPSEGWTSGGATVIIVGD 42 (59)
Q Consensus 11 t~~vdg~~LavSD-nmpseGW~tgG~tViiiG~ 42 (59)
...+.|..+-++| .||+ ...|...+++||
T Consensus 298 ~~tl~G~pV~~~~d~~~~---~~~~~~~i~~GD 327 (378)
T TIGR01554 298 PYSLLGRPVVELEDQMLD---IGAGKKPVIFGD 327 (378)
T ss_pred CceeCCceEEEecccccC---CCCCcceEEEEc
Confidence 3456677777776 9987 345677888887
No 38
>COG2986 HutH Histidine ammonia-lyase [Amino acid transport and metabolism]
Probab=20.52 E-value=26 Score=28.52 Aligned_cols=28 Identities=39% Similarity=0.540 Sum_probs=18.9
Q ss_pred ceEEEecCC---CCCCceecCeEEEEecCccccceeeEE
Q psy14529 17 PLLAVSDNI---PSEGWTSGGATVIIVGDNFFDGLQVVF 52 (59)
Q Consensus 17 ~~LavSDnm---pseGW~tgG~tViiiG~nFf~GLqvvf 52 (59)
.+=|++||. +.++ -+|+|.|| .|-++.|
T Consensus 305 ElNsvtDNPlv~~~~~-------~ViSgGNF-hg~pva~ 335 (498)
T COG2986 305 ELNSVTDNPLVFGDEE-------EVISGGNF-HGEPVAL 335 (498)
T ss_pred hhhhcCCCCcccCCCC-------ccccCCCc-CchhHHH
Confidence 445789996 4444 45699999 6666543
No 39
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.51 E-value=2.4e+02 Score=18.72 Aligned_cols=33 Identities=24% Similarity=0.595 Sum_probs=23.5
Q ss_pred EEEeeeccCCceEEEecCCCCCCceecC-eEEEE
Q psy14529 7 VISTQVGVDGPLLAVSDNIPSEGWTSGG-ATVII 39 (59)
Q Consensus 7 ~vstt~~vdg~~LavSDnmpseGW~tgG-~tVii 39 (59)
+.-+.-.++|-.|-+||++|+++=+.|+ .+++|
T Consensus 48 i~HA~l~i~g~~im~sd~~~~~~~~~~~~~s~~l 81 (136)
T COG2764 48 IMHAELRIGGSTIMLSDAFPDMGATEGGGTSLSL 81 (136)
T ss_pred eEEEEEEECCEEEEEecCCCccCcccCCCeeEEE
Confidence 3445667889999999999999855543 44443
No 40
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=20.43 E-value=64 Score=21.97 Aligned_cols=18 Identities=22% Similarity=0.422 Sum_probs=15.0
Q ss_pred EEEEecCccccceeeEEe
Q psy14529 36 TVIIVGDNFFDGLQVVFG 53 (59)
Q Consensus 36 tViiiG~nFf~GLqvvfG 53 (59)
...|+||.|.....++|=
T Consensus 269 ~~~ilG~~fl~~~~vvfD 286 (299)
T cd05472 269 GLSIIGNVQQQTFRVVYD 286 (299)
T ss_pred CCEEEchHHccceEEEEE
Confidence 356899999999999883
No 41
>PRK10148 hypothetical protein; Provisional
Probab=20.41 E-value=2.5e+02 Score=18.01 Aligned_cols=36 Identities=25% Similarity=0.370 Sum_probs=22.1
Q ss_pred EEEeeeccCCceEEEecCCCCCCceecCeEEEEecC
Q psy14529 7 VISTQVGVDGPLLAVSDNIPSEGWTSGGATVIIVGD 42 (59)
Q Consensus 7 ~vstt~~vdg~~LavSDnmpseGW~tgG~tViiiG~ 42 (59)
+.-+...+.|..|-+||++|.......+.++.|--|
T Consensus 59 i~Ha~l~i~g~~lm~sD~~~~~~~~~~~~~l~l~~~ 94 (147)
T PRK10148 59 IAHANVRIAGSDIMMSDAIPSGKAHYSGFTLVLDTQ 94 (147)
T ss_pred EEEEEEEECCEEEEEECCCCCcCCCCCeEEEEEECC
Confidence 445566778888999998865533222455554433
No 42
>PHA02146 hypothetical protein
Probab=20.18 E-value=38 Score=21.76 Aligned_cols=10 Identities=60% Similarity=1.092 Sum_probs=7.2
Q ss_pred ecCCCCCCce
Q psy14529 22 SDNIPSEGWT 31 (59)
Q Consensus 22 SDnmpseGW~ 31 (59)
||--|+|||.
T Consensus 54 s~~ap~~gwa 63 (86)
T PHA02146 54 SAFAPSEGWA 63 (86)
T ss_pred cccCcchhHH
Confidence 4444999993
No 43
>PRK13257 allantoicase; Provisional
Probab=20.06 E-value=66 Score=24.79 Aligned_cols=15 Identities=27% Similarity=0.384 Sum_probs=12.2
Q ss_pred eeccCCceEEEecCC
Q psy14529 11 QVGVDGPLLAVSDNI 25 (59)
Q Consensus 11 t~~vdg~~LavSDnm 25 (59)
+...-|++|++||.-
T Consensus 22 s~~~Gg~vl~~sDe~ 36 (336)
T PRK13257 22 DRRLGAQVLAASDEF 36 (336)
T ss_pred hhhcCCEEEEEchhh
Confidence 556789999999965
Done!