Query psy14529
Match_columns 59
No_of_seqs 34 out of 36
Neff 2.9
Searched_HMMs 29240
Date Fri Aug 16 22:12:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14529.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14529hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mlp_A Transcription factor CO 100.0 2.1E-30 7E-35 196.0 3.0 59 1-59 185-272 (402)
2 3muj_A Transcription factor CO 99.7 9.9E-18 3.4E-22 112.5 1.2 34 26-59 13-46 (138)
3 3mln_A Transcription factor CO 98.9 4.2E-10 1.4E-14 80.4 3.0 25 1-25 185-209 (224)
4 3lyr_A Transcription factor CO 98.7 5.3E-09 1.8E-13 75.5 3.0 25 1-25 201-225 (243)
5 2cxk_A Camta1, calmodulin bind 93.8 0.018 6.3E-07 34.9 1.0 40 17-56 5-46 (95)
6 1u36_A DNA-binding, nuclear fa 91.0 0.11 3.9E-06 32.7 2.0 26 28-53 13-39 (106)
7 1ikn_C P50D, protein (NF-kappa 91.0 0.12 4E-06 33.2 2.1 27 28-54 13-40 (119)
8 2yrp_A Nuclear factor of activ 88.8 0.2 6.7E-06 32.1 1.8 28 27-54 17-44 (114)
9 1ikn_A P65, protein (NF-kappa- 88.6 0.55 1.9E-05 33.9 4.3 48 4-54 143-212 (286)
10 1imh_C NF-AT5, tonebp, nuclear 87.4 0.45 1.5E-05 34.3 3.2 48 4-54 152-217 (281)
11 1nfk_A Protein (nuclear factor 86.5 0.74 2.5E-05 33.8 3.9 47 4-53 176-245 (325)
12 2uzx_B Hepatocyte growth facto 85.7 0.15 5.3E-06 39.5 0.0 30 26-55 643-674 (727)
13 1svc_P Protein (nuclear factor 83.6 1.3 4.5E-05 33.1 4.2 48 4-54 216-286 (365)
14 3orj_A Sugar-binding protein; 82.3 1 3.5E-05 34.7 3.2 24 31-54 124-147 (439)
15 1my7_A NF-kappab P65 (RELA) su 81.1 0.83 2.8E-05 29.2 2.0 27 28-54 13-40 (114)
16 2o61_A Transcription factor P6 79.6 2.5 8.6E-05 32.9 4.6 51 4-58 144-216 (540)
17 1p7h_L Nuclear factor of activ 78.8 1.5 5E-05 31.7 2.9 28 27-54 194-221 (286)
18 1zk9_A Transcription factor RE 76.1 0.74 2.5E-05 29.3 0.7 31 27-58 21-52 (110)
19 1gji_A C-REL protein, C-REL pr 75.7 2.2 7.6E-05 30.6 3.1 49 4-55 145-216 (275)
20 2v2t_A RELB, transcription fac 73.4 2.7 9.1E-05 30.3 3.0 32 26-58 198-230 (288)
21 2uzx_B Hepatocyte growth facto 72.8 1.6 5.4E-05 33.9 1.8 30 26-55 549-587 (727)
22 1oy3_C Transcription factor P6 69.9 2.4 8.3E-05 27.9 2.0 30 28-58 13-43 (136)
23 3brd_A LIN-12 and GLP-1 phenot 64.9 3.2 0.00011 32.2 2.1 22 35-56 391-412 (477)
24 1a3q_A Protein (nuclear factor 57.7 5.5 0.00019 28.6 2.1 28 26-53 193-221 (285)
25 3iag_C Recombining binding pro 55.4 5.8 0.0002 30.4 2.0 22 35-56 343-364 (422)
26 3orj_A Sugar-binding protein; 45.1 10 0.00035 29.1 2.0 25 33-57 37-61 (439)
27 2p9w_A MAL S 1 allergenic prot 43.7 23 0.00079 25.5 3.5 32 11-42 240-278 (334)
28 4hw6_A Hypothetical protein, I 38.2 16 0.00055 25.5 2.0 34 20-55 21-57 (433)
29 3tgh_A Glideosome-associated p 28.2 22 0.00075 24.8 1.3 13 36-48 37-49 (342)
30 1dki_A Pyrogenic exotoxin B zy 27.7 37 0.0013 24.4 2.5 18 6-24 62-79 (371)
31 3tc9_A Hypothetical hydrolase; 26.9 20 0.00068 24.8 0.9 33 21-55 20-55 (430)
32 3m21_A Probable tautomerase HP 24.3 68 0.0023 16.7 2.6 18 19-37 43-60 (67)
33 3abf_A 4-oxalocrotonate tautom 21.2 45 0.0015 16.7 1.4 17 19-36 41-57 (64)
34 1b5f_B Protein (cardosin A); h 21.1 40 0.0014 18.4 1.3 17 36-52 58-74 (87)
No 1
>3mlp_A Transcription factor COE1; transcription factor, pseudo-IG-fold, TIG-domain, IPT-domain loop-helix; HET: DNA CIT; 2.80A {Mus musculus} PDB: 3n50_A
Probab=99.96 E-value=2.1e-30 Score=195.99 Aligned_cols=59 Identities=85% Similarity=1.403 Sum_probs=58.2
Q ss_pred CceEEEEEEeeeccCCceEEEecCC-----------------------------CCCCceecCeEEEEecCccccceeeE
Q psy14529 1 MRRFQVVISTQVGVDGPLLAVSDNI-----------------------------PSEGWTSGGATVIIVGDNFFDGLQVV 51 (59)
Q Consensus 1 mRrfqV~vstt~~vdg~~LavSDnm-----------------------------pseGW~tgG~tViiiG~nFf~GLqvv 51 (59)
||||||+|||++++|||+||||||| |+|||++||++|+|+|+|||+||||+
T Consensus 185 mRrfqv~vstt~~~~g~~lavSdnmfvHNnSkHGRra~r~~~s~~~tP~IkaIsPnEG~~tGG~tV~IiGenFf~GLQVv 264 (402)
T 3mlp_A 185 MRRFQVVVSTTVNVDGHVLAVSDNMFVHNNSKHGRRARRLDPSEAATPCIKAISPSEGWTTGGATVIIIGDNFFDGLQVI 264 (402)
T ss_dssp CCCEEEEEESSSCCSSCCSEEEEEEEEECCTTTTBCCCCCCTTTTSCCEEEECSSCEECTTCCCEEEEEEECCCTTCEEE
T ss_pred ceeEEEEEeccccCCCceeeccCCceeecccccccccccCCcccCCCcceEEecCCCCCccCCeEEEEeCCCcccCCEEE
Confidence 8999999999999999999999999 99999999999999999999999999
Q ss_pred EeeeEeeC
Q psy14529 52 FGTMLVWS 59 (59)
Q Consensus 52 fG~~lvws 59 (59)
||++++|+
T Consensus 265 FGtt~vWs 272 (402)
T 3mlp_A 265 FGTMLVWS 272 (402)
T ss_dssp ETTEEECE
T ss_pred EccEeeee
Confidence 99999995
No 2
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=99.66 E-value=9.9e-18 Score=112.55 Aligned_cols=34 Identities=94% Similarity=1.653 Sum_probs=33.4
Q ss_pred CCCCceecCeEEEEecCccccceeeEEeeeEeeC
Q psy14529 26 PSEGWTSGGATVIIVGDNFFDGLQVVFGTMLVWS 59 (59)
Q Consensus 26 pseGW~tgG~tViiiG~nFf~GLqvvfG~~lvws 59 (59)
|+|||++||++|+|+|+|||+||||+||++++|+
T Consensus 13 P~eG~~~GG~~V~I~G~nF~~GlqV~FG~t~~w~ 46 (138)
T 3muj_A 13 PSEGWTTGGATVIIIGDNFFDGLQVVFGTMLVWS 46 (138)
T ss_dssp SSEEETTCCCEEEEEEESCCTTCEEEETTEEECE
T ss_pred CCCCCccCCeEEEEeCCCcccCCEEEECCeeeee
Confidence 9999999999999999999999999999999995
No 3
>3mln_A Transcription factor COE1; transcription factor, pseudo-IG-fold, Zn-finger, Zn-knuckle; HET: DNA; 2.40A {Mus musculus} PDB: 3mlo_A*
Probab=98.92 E-value=4.2e-10 Score=80.43 Aligned_cols=25 Identities=76% Similarity=1.068 Sum_probs=24.7
Q ss_pred CceEEEEEEeeeccCCceEEEecCC
Q psy14529 1 MRRFQVVISTQVGVDGPLLAVSDNI 25 (59)
Q Consensus 1 mRrfqV~vstt~~vdg~~LavSDnm 25 (59)
||||||+|||++++|||+|||||||
T Consensus 185 mRrFqv~istt~~~dg~vlavSdnm 209 (224)
T 3mln_A 185 MRRFQVVVSTTVNVDGHVLAVSDNM 209 (224)
T ss_dssp CCCEEEEEESSSCSSSSEEEECCCB
T ss_pred ceeeEEEEeeccccCCCeeeccCCc
Confidence 8999999999999999999999999
No 4
>3lyr_A Transcription factor COE1; immunoglobulin (IG)-like domain, structural genomics, struct genomics consortium, SGC, activator, developmental protein; 2.51A {Homo sapiens}
Probab=98.72 E-value=5.3e-09 Score=75.50 Aligned_cols=25 Identities=76% Similarity=1.068 Sum_probs=24.7
Q ss_pred CceEEEEEEeeeccCCceEEEecCC
Q psy14529 1 MRRFQVVISTQVGVDGPLLAVSDNI 25 (59)
Q Consensus 1 mRrfqV~vstt~~vdg~~LavSDnm 25 (59)
||||||+|||+.+++||+|||||||
T Consensus 201 ~RrFqV~Istt~~vdG~vLavSdnm 225 (243)
T 3lyr_A 201 MRRFQVVVSTTVNVDGHVLAVSDNM 225 (243)
T ss_dssp CCCEEEEEESSSCTTSSEEEECCCB
T ss_pred ceeeEEEEeeccccCCCeeeccCCc
Confidence 8999999999999999999999999
No 5
>2cxk_A Camta1, calmodulin binding transcription activator 1; structural genomics, TIG/IPT domain, NPPSFA; 1.85A {Homo sapiens} SCOP: b.1.18.1
Probab=93.81 E-value=0.018 Score=34.89 Aligned_cols=40 Identities=23% Similarity=0.309 Sum_probs=31.6
Q ss_pred ceEEEecCCCCCCceecCeEEEEecCccccc--eeeEEeeeE
Q psy14529 17 PLLAVSDNIPSEGWTSGGATVIIVGDNFFDG--LQVVFGTML 56 (59)
Q Consensus 17 ~~LavSDnmpseGW~tgG~tViiiG~nFf~G--LqvvfG~~l 56 (59)
.++.|.|=-|+.|-..||+.|+|.|.++=+| .++.||...
T Consensus 5 ~~~~Itd~sP~~gp~sGGTkv~I~G~~L~~gs~~~~~fG~~~ 46 (95)
T 2cxk_A 5 SSGMVTDYSPEWSYPEGGVKVLITGPWQEASNNYSCLFDQIS 46 (95)
T ss_dssp CCSCCCEEECSEECTTCCCEEEEESSCCCCSSCEEEEETTEE
T ss_pred CcEEEEEECCCcccCCCCEEEEEEeECCCCCccEEEEECCEE
Confidence 3445555559999999999999999877655 889999864
No 6
>1u36_A DNA-binding, nuclear factor NF-kappa-B P105 subunit; transcription factor, NF-KB, dimerization domain, intertwined folding; 1.89A {Mus musculus} SCOP: b.1.18.1 PDB: 1u3z_A 1u3y_A 3jv4_B 1bfs_A 1u3j_A 1u42_A 1u41_A 1nfi_B
Probab=91.01 E-value=0.11 Score=32.67 Aligned_cols=26 Identities=27% Similarity=0.533 Sum_probs=22.8
Q ss_pred CCceecCeEEEEecCccc-cceeeEEe
Q psy14529 28 EGWTSGGATVIIVGDNFF-DGLQVVFG 53 (59)
Q Consensus 28 eGW~tgG~tViiiG~nFf-~GLqvvfG 53 (59)
.|-.+||..|+++||||- +..+|+|=
T Consensus 13 s~~v~GG~Ev~Llc~kv~K~dikV~F~ 39 (106)
T 1u36_A 13 AGCVTGGEEIWLLCDKVQKDDIQIRFY 39 (106)
T ss_dssp EEETTCCCEEEEEESCCCTTSCEEEEE
T ss_pred ccccCCCCEEEEEeccccCCCCEEEEE
Confidence 355689999999999999 69999995
No 7
>1ikn_C P50D, protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Mus musculus} SCOP: b.1.18.1
Probab=91.00 E-value=0.12 Score=33.24 Aligned_cols=27 Identities=26% Similarity=0.525 Sum_probs=23.2
Q ss_pred CCceecCeEEEEecCccc-cceeeEEee
Q psy14529 28 EGWTSGGATVIIVGDNFF-DGLQVVFGT 54 (59)
Q Consensus 28 eGW~tgG~tViiiG~nFf-~GLqvvfG~ 54 (59)
.|-.+||..|+++||||- +..+|+|=.
T Consensus 13 s~~v~GG~Ev~Llc~kv~K~dikV~F~e 40 (119)
T 1ikn_C 13 AGCVTGGEEIYLLCDKVQKDDIQIRFYE 40 (119)
T ss_dssp EEETTCCCEEEEEESCCCTTSEEEEEEE
T ss_pred ccccCCCCEEEEEeccccCCCCEEEEEE
Confidence 355789999999999999 699999953
No 8
>2yrp_A Nuclear factor of activated T-cells, cytoplasmic 4; beta-sandwich, immunoglobulin-like fold, TIG domain, IPT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.78 E-value=0.2 Score=32.13 Aligned_cols=28 Identities=32% Similarity=0.541 Sum_probs=24.2
Q ss_pred CCCceecCeEEEEecCccccceeeEEee
Q psy14529 27 SEGWTSGGATVIIVGDNFFDGLQVVFGT 54 (59)
Q Consensus 27 seGW~tgG~tViiiG~nFf~GLqvvfG~ 54 (59)
..|-..||..++++||||-...+|+|=.
T Consensus 17 ~s~~v~GG~Ev~Ll~~k~~kd~kV~F~E 44 (114)
T 2yrp_A 17 SACSVRGGEELVLTGSNFLPDSKVVFIE 44 (114)
T ss_dssp SCEETTCCSEEEEEEESCCTTCEEEEEC
T ss_pred cccccCCCCEEEEEecccCCCCEEEEEE
Confidence 4456789999999999999899999953
No 9
>1ikn_A P65, protein (NF-kappa-B P65 subunit); transcription factor, IKB/NFKB complex; 2.30A {Mus musculus} SCOP: b.1.18.1 b.2.5.3 PDB: 1nfi_A 2ram_A* 1ram_A* 2i9t_A 1lei_A* 1le9_A 1le5_A* 1vkx_A* 3gut_A
Probab=88.62 E-value=0.55 Score=33.91 Aligned_cols=48 Identities=27% Similarity=0.466 Sum_probs=35.7
Q ss_pred EEEEEEeeeccCCceEE----EecCC-----------------CCCCceecCeEEEEecCccc-cceeeEEee
Q psy14529 4 FQVVISTQVGVDGPLLA----VSDNI-----------------PSEGWTSGGATVIIVGDNFF-DGLQVVFGT 54 (59)
Q Consensus 4 fqV~vstt~~vdg~~La----vSDnm-----------------pseGW~tgG~tViiiG~nFf-~GLqvvfG~ 54 (59)
|||.+-.. +|..+. +|+.+ -..|-.+||..|+++||||- +..+|+|=.
T Consensus 143 Fq~~i~~~---~G~~~~L~pV~S~PI~~~ks~~~~eL~I~r~s~~sg~v~GG~Ev~Llc~kv~K~di~V~F~e 212 (286)
T 1ikn_A 143 FQVTVRDP---AGRPLLLTPVLSHPIFDNRAPNTAELKICRVNRNSGSCLGGDEIFLLCDKVQKEDIEVYFTG 212 (286)
T ss_dssp EEEEEECS---SSSEEECCCEECCCEECCCC--CCCCCEEEESCSEEETTCCCEEEEEESCCCTTSCEEEEEE
T ss_pred EEEEEECC---CCCEEEeCCeEecccccCCCCCCCCCeEEEecCCccccCCCCEEEEEecccccCCCEEEEec
Confidence 77777542 465443 46666 34578899999999999998 699999954
No 10
>1imh_C NF-AT5, tonebp, nuclear factor of activated T cells 5; beta barrel, protein-DNA complex, double helix, DNA encirclement, transcription/DNA complex; 2.86A {Homo sapiens} SCOP: b.1.18.1 b.2.5.3
Probab=87.40 E-value=0.45 Score=34.26 Aligned_cols=48 Identities=33% Similarity=0.557 Sum_probs=35.9
Q ss_pred EEEEEEeeeccCC---ceEEEecCC---------------CCCCceecCeEEEEecCccccceeeEEee
Q psy14529 4 FQVVISTQVGVDG---PLLAVSDNI---------------PSEGWTSGGATVIIVGDNFFDGLQVVFGT 54 (59)
Q Consensus 4 fqV~vstt~~vdg---~~LavSDnm---------------pseGW~tgG~tViiiG~nFf~GLqvvfG~ 54 (59)
|||.+--. +| .|-.+|+.+ -..|-.+||..|+++||||-...+|+|=-
T Consensus 152 F~v~i~~~---~G~~~~L~~~S~PI~d~k~~~~l~I~r~s~~sg~v~GG~Ev~Llc~kv~KdikVrF~E 217 (281)
T 1imh_C 152 FRVNIMRK---DGSTLTLQTPSSPILCTQPAGVPEILKKSLHSCSVKGEEEVFLIGKNFLKGTKVIFQE 217 (281)
T ss_dssp EEEEEECS---SSCEEEEEEECCCEECSCCCCCCEEEEESCCEEETTCCCEEEEEEECCCTTCEEEEES
T ss_pred EEEEEECC---CCCEEEccCcCcceecCCCCCCCeEEEEecCccccCCCcEEEEEeeccCCCcEEEEEE
Confidence 77777432 44 344466666 35578899999999999999889999954
No 11
>1nfk_A Protein (nuclear factor kappa-B (NF-KB)); NF-KB P50, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA; 2.30A {Mus musculus} SCOP: b.1.18.1 b.2.5.3 PDB: 2v2t_B 1ooa_A 1lei_B* 1le9_B 1le5_B* 2i9t_B 1vkx_B* 3gut_B 2o61_B
Probab=86.49 E-value=0.74 Score=33.80 Aligned_cols=47 Identities=30% Similarity=0.574 Sum_probs=36.5
Q ss_pred EEEEEEeeeccCCce---E--EEecCC-----------------CCCCceecCeEEEEecCccc-cceeeEEe
Q psy14529 4 FQVVISTQVGVDGPL---L--AVSDNI-----------------PSEGWTSGGATVIIVGDNFF-DGLQVVFG 53 (59)
Q Consensus 4 fqV~vstt~~vdg~~---L--avSDnm-----------------pseGW~tgG~tViiiG~nFf-~GLqvvfG 53 (59)
|||-+--. +|.+ | -+|+.+ -..|-.+||..|++++|+|- +..+|+|=
T Consensus 176 Fq~fl~~~---~G~~t~~l~pV~S~PI~d~k~~~a~eL~I~r~s~~sg~v~GG~Ev~LLc~kv~K~Di~VrF~ 245 (325)
T 1nfk_A 176 FTAFLPDS---TGSFTRRLEPVVSDAIYDSKAPNASNLKIVRMDRTAGCVTGGEEIYLLCDKVQKDDIQIRFY 245 (325)
T ss_dssp EEEEEECS---SSCEEEECCCEECCCEECTTSTTSCCCCEEEESCSCEESSCCCEEEEEESCCCTTTEEEEEE
T ss_pred EEEEEECC---CCcEeeecCCeEecceecCCCCCCCCCeEEEecCCccccCCCCEEEEEecccccCCCEEEEE
Confidence 77776543 5653 3 567766 56789999999999999999 69999994
No 12
>2uzx_B Hepatocyte growth factor receptor; signaling protein/receptor, leucine rich repeat, receptor ectodomain, signaling protein, ATP-binding; 2.8A {Homo sapiens} PDB: 2uzy_B 1shy_B 1ssl_A
Probab=85.72 E-value=0.15 Score=39.46 Aligned_cols=30 Identities=23% Similarity=0.481 Sum_probs=0.0
Q ss_pred CCCCceecCeEEEEecCccccc--eeeEEeee
Q psy14529 26 PSEGWTSGGATVIIVGDNFFDG--LQVVFGTM 55 (59)
Q Consensus 26 pseGW~tgG~tViiiG~nFf~G--LqvvfG~~ 55 (59)
|+.|...||++|+|.|.||-.+ ++|.||..
T Consensus 643 P~~G~~sGGt~ITI~G~nf~~~~~~~V~ig~~ 674 (727)
T 2uzx_B 643 PKYGPMAGGTLLTLTGNYLNSGNSRHISIGGK 674 (727)
T ss_dssp --------------------------------
T ss_pred CCccccCCCEEEEEEEECCCCCCceEEEECCE
Confidence 9999999999999999999777 45777753
No 13
>1svc_P Protein (nuclear factor kappa-B (NF-KB)); DNA-binding, transcription regulation, activator, nuclear protein, phosphorylation, repeat, DNA; HET: DNA; 2.60A {Homo sapiens} SCOP: b.1.18.1 b.2.5.3
Probab=83.58 E-value=1.3 Score=33.07 Aligned_cols=48 Identities=29% Similarity=0.562 Sum_probs=36.8
Q ss_pred EEEEEEeeeccCCce---E--EEecCC-----------------CCCCceecCeEEEEecCccc-cceeeEEee
Q psy14529 4 FQVVISTQVGVDGPL---L--AVSDNI-----------------PSEGWTSGGATVIIVGDNFF-DGLQVVFGT 54 (59)
Q Consensus 4 fqV~vstt~~vdg~~---L--avSDnm-----------------pseGW~tgG~tViiiG~nFf-~GLqvvfG~ 54 (59)
|||-+--. +|.+ | -+|+.+ -..|-.+||..|++++|+|- +..+|+|=.
T Consensus 216 Fqafl~~~---~G~~t~~l~pV~S~PI~d~K~~~a~eL~I~R~s~~sgsv~GG~Ev~LLc~Kv~K~DikVrF~E 286 (365)
T 1svc_P 216 FTAFLPDS---TGSFTRRLEPVVSDAIYDSKAPNASNLKIVRMDRTAGCVTGGEEIYLLCDKVQKDDIQIRFYE 286 (365)
T ss_dssp EEEEEECS---SSCEEEECCCEEEEEEECTTSGGGCCCCEEEESCSEEETTCCCEEEEEESSCCGGGCEEEEEE
T ss_pred EEEEEECC---CCcEeeecCCeEecceecCCCCCCCCCeEEEecCCccccCCCCEEEEEecccccCCCEEEEEE
Confidence 77766543 5653 2 567766 56688999999999999998 699999954
No 14
>3orj_A Sugar-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.16A {Bacteroides ovatus}
Probab=82.28 E-value=1 Score=34.65 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.6
Q ss_pred eecCeEEEEecCccccceeeEEee
Q psy14529 31 TSGGATVIIVGDNFFDGLQVVFGT 54 (59)
Q Consensus 31 ~tgG~tViiiG~nFf~GLqvvfG~ 54 (59)
...|.+|.|.|+||.+..+|.|+.
T Consensus 124 ~~aGd~VTItGsNF~~iskV~FgG 147 (439)
T 3orj_A 124 PNVGEPIIVYGSGLTEIAKVVFPG 147 (439)
T ss_dssp CCTTCEEEEEEECCTTCCEEEETT
T ss_pred CCCCCEEEEEccCCCceeEEEECC
Confidence 367899999999999999999983
No 15
>1my7_A NF-kappab P65 (RELA) subunit; immunoglobulin, IG, beta-sandwich, beta-sheet, homodimerdna- binding, transcription regulation, activator; 1.49A {Mus musculus} SCOP: b.1.18.1 PDB: 1my5_A 1bft_A
Probab=81.09 E-value=0.83 Score=29.19 Aligned_cols=27 Identities=22% Similarity=0.441 Sum_probs=23.0
Q ss_pred CCceecCeEEEEecCcccc-ceeeEEee
Q psy14529 28 EGWTSGGATVIIVGDNFFD-GLQVVFGT 54 (59)
Q Consensus 28 eGW~tgG~tViiiG~nFf~-GLqvvfG~ 54 (59)
.|-..||..|+++||||-. ..+|+|=.
T Consensus 13 sg~v~GG~Ev~LLc~kv~K~Di~VrF~e 40 (114)
T 1my7_A 13 SGSCLGGDEIFLLCDKVQKEDIEVYFTG 40 (114)
T ss_dssp EEETTCCCEEEEEESCCCTTSCEEEEEE
T ss_pred ceecCCCcEEEEEecccccCCCEEEEEc
Confidence 4557899999999999985 89999954
No 16
>2o61_A Transcription factor P65/interferon regulatory FA 7/interferon regulatory factor...; protein-DNA complex, transcription-DNA complex; 2.80A {Homo sapiens}
Probab=79.59 E-value=2.5 Score=32.92 Aligned_cols=51 Identities=27% Similarity=0.483 Sum_probs=37.1
Q ss_pred EEEEEEeeeccCCceE----EEecCC-----------------CCCCceecCeEEEEecCcccc-ceeeEEeeeEee
Q psy14529 4 FQVVISTQVGVDGPLL----AVSDNI-----------------PSEGWTSGGATVIIVGDNFFD-GLQVVFGTMLVW 58 (59)
Q Consensus 4 fqV~vstt~~vdg~~L----avSDnm-----------------pseGW~tgG~tViiiG~nFf~-GLqvvfG~~lvw 58 (59)
|||-|-- -+|..+ -+|+.+ -..|-.+||..|+++||||-. ..+|+|=.. +|
T Consensus 144 Fq~fi~~---~~G~~~~L~pV~S~PI~d~k~~~~~eL~I~r~s~~sgsv~GG~Ev~LLc~kv~K~DikVrF~e~-~W 216 (540)
T 2o61_A 144 FQVTVRD---PSGRPLRLPPVLSHPIFDNRAPNTAELKICRVNRNSGSCLGGDEIFLLCDKVQKEDIEVYFTGP-GW 216 (540)
T ss_dssp EEEEEES---SSSSEEECCCEECCCEECSSSTTSSCCCEEEESCSEEETTCCCEEEEEESSCBTTBCEEEEEET-TE
T ss_pred EEEEEEC---CCCCEEecCCeeccceecCCCCCCCCCeEEEecCCccccCCCCeEEEEecccccCCcEEEEecc-cc
Confidence 7777655 345555 346665 334888999999999999986 999999542 44
No 17
>1p7h_L Nuclear factor of activated T-cells, cytoplasmic 2; DNA binding protein, transcription regulation, activator, transcription/DNA complex; 2.60A {Homo sapiens} SCOP: b.1.18.1 b.2.5.3 PDB: 2o93_L 1a02_N* 1pzu_B 1owr_M 2as5_N 1s9k_C 3qrf_N 1nfa_A 1a66_A*
Probab=78.76 E-value=1.5 Score=31.68 Aligned_cols=28 Identities=32% Similarity=0.540 Sum_probs=25.0
Q ss_pred CCCceecCeEEEEecCccccceeeEEee
Q psy14529 27 SEGWTSGGATVIIVGDNFFDGLQVVFGT 54 (59)
Q Consensus 27 seGW~tgG~tViiiG~nFf~GLqvvfG~ 54 (59)
..|-.+||..|++++|||-...+|+|=.
T Consensus 194 ~sg~v~GG~Ei~Llc~kv~KDikVrF~E 221 (286)
T 1p7h_L 194 DSCLVYGGQQMILTGQNFTSESKVVFTE 221 (286)
T ss_dssp SEEETTCCCEEEEEEESCCSSCEEEEEE
T ss_pred ccccccCCcEEEEEecccCCCcEEEEEE
Confidence 4478899999999999999899999965
No 18
>1zk9_A Transcription factor RELB; NF-KB, transcription factors, intertwined dimer; 2.18A {Mus musculus} PDB: 1zka_A 3jv6_A 3jv4_A 3jss_A 3juz_A 3jv0_A
Probab=76.12 E-value=0.74 Score=29.26 Aligned_cols=31 Identities=29% Similarity=0.598 Sum_probs=26.3
Q ss_pred CCCceecCeEEEEecCcccc-ceeeEEeeeEee
Q psy14529 27 SEGWTSGGATVIIVGDNFFD-GLQVVFGTMLVW 58 (59)
Q Consensus 27 seGW~tgG~tViiiG~nFf~-GLqvvfG~~lvw 58 (59)
..|-.+||..|+++||||-. ..+|+|=.. +|
T Consensus 21 ~sg~v~GG~Ev~LLc~kv~K~Di~V~F~e~-~W 52 (110)
T 1zk9_A 21 ESGPCTGGEELYLLCDKVQKEDISVVFSTA-SW 52 (110)
T ss_dssp SCCCTTCCCCCCEEESCCCTTSCCCEEEET-TE
T ss_pred CccccCCCCEEEEEecccccCCcEEEEech-he
Confidence 46778999999999999998 999999643 55
No 19
>1gji_A C-REL protein, C-REL proto-oncogene protein; NF-KB/DNA complex, transcription factor, C-REL homodimer, transcription/DNA complex; 2.85A {Gallus gallus} SCOP: b.1.18.1 b.2.5.3
Probab=75.67 E-value=2.2 Score=30.56 Aligned_cols=49 Identities=27% Similarity=0.416 Sum_probs=36.3
Q ss_pred EEEEEEeeeccCCce---E--EEecCC-----------------CCCCceecCeEEEEecCcccc-ceeeEEeee
Q psy14529 4 FQVVISTQVGVDGPL---L--AVSDNI-----------------PSEGWTSGGATVIIVGDNFFD-GLQVVFGTM 55 (59)
Q Consensus 4 fqV~vstt~~vdg~~---L--avSDnm-----------------pseGW~tgG~tViiiG~nFf~-GLqvvfG~~ 55 (59)
|||-+-. -+|.. | -+|+.+ =..|-.+||..|++++|+|-. ..+|.|=..
T Consensus 145 Fq~fi~~---~~G~~~~~l~pV~S~pI~d~ks~~~~eL~I~r~s~~sg~v~GG~Ev~LLc~kv~K~di~VrF~e~ 216 (275)
T 1gji_A 145 FQAFLPD---EHGNYTLALPPLISNPIYDNRAPNTAELRICRVNKNCGSVKGGDEIFILCDKVQKDDIEVRFVLD 216 (275)
T ss_dssp EEEEEEC---SSSSEEEECCCEECCCEEBTTSTTTSCCCEEEESCSEEETTCCCEEEEEESCCCGGGCEEEEEET
T ss_pred EEEEEEC---CCCCCccccCCeEccccccCCCCCCCCCEEEEeeCCccccCCCCEEEEEecccccCCCEEEEEcc
Confidence 7777654 34643 3 467766 345788999999999999985 899999643
No 20
>2v2t_A RELB, transcription factor RELB; 4-diphosphocytidyl-2C-methyl-D-erythritol, aquifex aeolicus, nucleotide-binding, isoprene biosynthesis; 3.05A {Mus musculus} PDB: 3do7_A
Probab=73.38 E-value=2.7 Score=30.34 Aligned_cols=32 Identities=28% Similarity=0.591 Sum_probs=27.1
Q ss_pred CCCCceecCeEEEEecCccc-cceeeEEeeeEee
Q psy14529 26 PSEGWTSGGATVIIVGDNFF-DGLQVVFGTMLVW 58 (59)
Q Consensus 26 pseGW~tgG~tViiiG~nFf-~GLqvvfG~~lvw 58 (59)
-..|-.+||..|+++||||- +..+|+|=. .+|
T Consensus 198 ~~sgsv~GG~Ev~LLc~kv~K~dikV~F~e-~~W 230 (288)
T 2v2t_A 198 KESGPCTGGEELYLLCDKVQKEDISVVFST-ASW 230 (288)
T ss_dssp CSCCCSSCCCEEEEEBSSCCTTSEEEEEEC-SSC
T ss_pred CCccccCCCCEEEEEecccccCCCEEEEEe-cce
Confidence 34589999999999999999 799999964 555
No 21
>2uzx_B Hepatocyte growth factor receptor; signaling protein/receptor, leucine rich repeat, receptor ectodomain, signaling protein, ATP-binding; 2.8A {Homo sapiens} PDB: 2uzy_B 1shy_B 1ssl_A
Probab=72.76 E-value=1.6 Score=33.86 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=25.5
Q ss_pred CCCCceecCeEEEEecCccccc---------eeeEEeee
Q psy14529 26 PSEGWTSGGATVIIVGDNFFDG---------LQVVFGTM 55 (59)
Q Consensus 26 pseGW~tgG~tViiiG~nFf~G---------LqvvfG~~ 55 (59)
|..|=..||+.|+|.|.||-.+ ..|.||..
T Consensus 549 P~~Gp~~GGT~vTI~G~nf~~~~~~~~~~~~~~V~igg~ 587 (727)
T 2uzx_B 549 PNSAPLEGGTRLTICGWDFGFRRNNKFDLKKTRVLLGNE 587 (727)
T ss_dssp SSBCCSSCCCEEEEEEECCCEEETTEEESTTCEEEETTE
T ss_pred CCcccCCCCEEEEEEEecCCCCcccccCCcccEEEECCC
Confidence 9999999999999999999754 56777764
No 22
>1oy3_C Transcription factor P65; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: b.1.18.1 PDB: 1k3z_A
Probab=69.94 E-value=2.4 Score=27.90 Aligned_cols=30 Identities=23% Similarity=0.516 Sum_probs=24.2
Q ss_pred CCceecCeEEEEecCccc-cceeeEEeeeEee
Q psy14529 28 EGWTSGGATVIIVGDNFF-DGLQVVFGTMLVW 58 (59)
Q Consensus 28 eGW~tgG~tViiiG~nFf-~GLqvvfG~~lvw 58 (59)
.|-.+||..|++++|+|- +..+|.|=. .+|
T Consensus 13 sg~v~GG~Ev~LLceKv~K~Di~VrF~e-~~W 43 (136)
T 1oy3_C 13 SGSCLGGDEIFLLCDKVQKEDIEVYFTG-PGW 43 (136)
T ss_dssp EEETTCCCEEEEEESCCCTTSCEEEEEE-TTE
T ss_pred ccccCCCcEEEEEccccccCCCEEEEEc-cCe
Confidence 456789999999999998 499999843 244
No 23
>3brd_A LIN-12 and GLP-1 phenotype protein 1, isoform A; protein-DNA complex, signaling, transcription, notch; HET: DNA; 2.21A {Caenorhabditis elegans} SCOP: b.1.18.1 b.2.5.8 b.42.7.1 PDB: 2fo1_A 1ttu_A* 3brf_A*
Probab=64.94 E-value=3.2 Score=32.25 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=20.3
Q ss_pred eEEEEecCccccceeeEEeeeE
Q psy14529 35 ATVIIVGDNFFDGLQVVFGTML 56 (59)
Q Consensus 35 ~tViiiG~nFf~GLqvvfG~~l 56 (59)
+.+=+.|+||...|||-||.+.
T Consensus 391 ~mlel~G~nF~~~l~VWfG~~~ 412 (477)
T 3brd_A 391 SRVELHGRDFKPNLKVWFGATP 412 (477)
T ss_dssp CEEEEEEECCCTTEEEEETTEE
T ss_pred eEEEEEcccCCCCCeEEECCcc
Confidence 7888999999999999999875
No 24
>1a3q_A Protein (nuclear factor kappa-B P52); transcription factor, immune response, DNA-protein complex, transcription/DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: b.1.18.1 b.2.5.3 PDB: 3do7_B 3jv6_B 3jv5_A
Probab=57.65 E-value=5.5 Score=28.65 Aligned_cols=28 Identities=25% Similarity=0.413 Sum_probs=24.2
Q ss_pred CCCCceecCeEEEEecCcccc-ceeeEEe
Q psy14529 26 PSEGWTSGGATVIIVGDNFFD-GLQVVFG 53 (59)
Q Consensus 26 pseGW~tgG~tViiiG~nFf~-GLqvvfG 53 (59)
-..|-.+||..|++++|+|-. ..+|+|=
T Consensus 193 ~~sg~v~GG~Ev~Llc~kv~K~Di~V~F~ 221 (285)
T 1a3q_A 193 KTAGSVRGGDEVYLLCDKVQKDDIEVRFY 221 (285)
T ss_dssp CSEEETTCCCEEEEEESSCCTTTEEEEEE
T ss_pred CCccccCCCCEEEEEeccccCCCCEEEEE
Confidence 456888999999999999985 7999984
No 25
>3iag_C Recombining binding protein suppressor of hairless; protein-DNA complex, signaling, transcription, notch, activator, alternative splicing; HET: XYL; 2.00A {Mus musculus} PDB: 3brg_C* 3nbn_A 2f8x_C 3v79_C*
Probab=55.41 E-value=5.8 Score=30.42 Aligned_cols=22 Identities=36% Similarity=0.579 Sum_probs=20.1
Q ss_pred eEEEEecCccccceeeEEeeeE
Q psy14529 35 ATVIIVGDNFFDGLQVVFGTML 56 (59)
Q Consensus 35 ~tViiiG~nFf~GLqvvfG~~l 56 (59)
+.+-+.|+||...|+|-||.+.
T Consensus 343 amlEl~G~nF~~~L~VWFG~v~ 364 (422)
T 3iag_C 343 AMLELTGQNFTPNLRVWFGDVE 364 (422)
T ss_dssp CEEEEEEESCCTTEEEEETTEE
T ss_pred eEEEEEccCCCCCceEEECCCC
Confidence 6788999999999999999875
No 26
>3orj_A Sugar-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.16A {Bacteroides ovatus}
Probab=45.13 E-value=10 Score=29.13 Aligned_cols=25 Identities=20% Similarity=0.157 Sum_probs=22.2
Q ss_pred cCeEEEEecCccccceeeEEeeeEe
Q psy14529 33 GGATVIIVGDNFFDGLQVVFGTMLV 57 (59)
Q Consensus 33 gG~tViiiG~nFf~GLqvvfG~~lv 57 (59)
-|..|+|.|+||-+...|.|+...+
T Consensus 37 pGd~ItItGsNL~~vtkV~FNdvea 61 (439)
T 3orj_A 37 LGQLIRIEGEGFNGLKKVYINGYNC 61 (439)
T ss_dssp TTCEEEEEEECCTTCCEEEETTEEC
T ss_pred CCCEEEEEeeCCCCeeEEEECCEEe
Confidence 4899999999999999999987654
No 27
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=43.68 E-value=23 Score=25.45 Aligned_cols=32 Identities=16% Similarity=0.213 Sum_probs=25.0
Q ss_pred eeccCCceEEEecCC-------CCCCceecCeEEEEecC
Q psy14529 11 QVGVDGPLLAVSDNI-------PSEGWTSGGATVIIVGD 42 (59)
Q Consensus 11 t~~vdg~~LavSDnm-------pseGW~tgG~tViiiG~ 42 (59)
+++.+|.+|.|+|+| .++||.+.+..-.+-++
T Consensus 240 p~~~~G~vllV~~~~~~~~~l~S~DgW~sa~~~g~~~~~ 278 (334)
T 2p9w_A 240 TVPVGNESVLVGARAPYAISFRSWDNWKSANIKKTKRSE 278 (334)
T ss_dssp EEEETTEEEEEEEETTEEEEEECSSTTSEEEEEEEECGG
T ss_pred ccccCCEEEEEEcCCCCEEEEECCCCcceeEEeeeecCc
Confidence 566899999999998 66789887776665553
No 28
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=38.24 E-value=16 Score=25.47 Aligned_cols=34 Identities=32% Similarity=0.644 Sum_probs=25.3
Q ss_pred EEecCCCCCCceecCeEEEEecCcc---ccceeeEEeee
Q psy14529 20 AVSDNIPSEGWTSGGATVIIVGDNF---FDGLQVVFGTM 55 (59)
Q Consensus 20 avSDnmpseGW~tgG~tViiiG~nF---f~GLqvvfG~~ 55 (59)
.|++=.|.||= -|++++|-|+|| -+-+.|.||.+
T Consensus 21 ~i~~~~P~~g~--~~~~~~i~G~nfg~~~~~~~v~~~~~ 57 (433)
T 4hw6_A 21 VVEKFLPTEGR--KGTRVVVYGRNFGNDVSKVKVTIGGY 57 (433)
T ss_dssp EEEEEESSEEC--TTCEEEEEEECCCSCGGGEEEEETTE
T ss_pred EEEEECCCCCC--CCCEEEEEeECCCCCcceeEEEECCE
Confidence 45555588876 499999999999 44567877754
No 29
>3tgh_A Glideosome-associated protein 50; phosphatase fold, NOT A phosphatase, motor protein, structur protein, membrane protein; 1.70A {Plasmodium falciparum 3D7}
Probab=28.21 E-value=22 Score=24.84 Aligned_cols=13 Identities=38% Similarity=0.830 Sum_probs=11.3
Q ss_pred EEEEecCccccce
Q psy14529 36 TVIIVGDNFFDGL 48 (59)
Q Consensus 36 tViiiG~nFf~GL 48 (59)
=|++.|||||+|.
T Consensus 37 ~vl~~GD~~y~G~ 49 (342)
T 3tgh_A 37 FIVSPGSNFIDGV 49 (342)
T ss_dssp EEEECSCSBTTCC
T ss_pred EEEECCCcccCCC
Confidence 5788999999986
No 30
>1dki_A Pyrogenic exotoxin B zymogen; cysteine protease, papain-like; 1.60A {Streptococcus pyogenes} SCOP: d.3.1.1 PDB: 1pvj_A*
Probab=27.67 E-value=37 Score=24.39 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=14.1
Q ss_pred EEEEeeeccCCceEEEecC
Q psy14529 6 VVISTQVGVDGPLLAVSDN 24 (59)
Q Consensus 6 V~vstt~~vdg~~LavSDn 24 (59)
|+||...++. +|||+||+
T Consensus 62 vIVSgDdr~~-pVlays~~ 79 (371)
T 1dki_A 62 VIVSGDKRSP-EILGYSTS 79 (371)
T ss_dssp EEEESCTTSC-SEEEEESS
T ss_pred EEEeCCCCcC-ceEEEeCC
Confidence 5677766666 99999997
No 31
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=26.95 E-value=20 Score=24.85 Aligned_cols=33 Identities=30% Similarity=0.538 Sum_probs=23.1
Q ss_pred EecCCCCCCceecCeEEEEecCcccc---ceeeEEeee
Q psy14529 21 VSDNIPSEGWTSGGATVIIVGDNFFD---GLQVVFGTM 55 (59)
Q Consensus 21 vSDnmpseGW~tgG~tViiiG~nFf~---GLqvvfG~~ 55 (59)
|++=.|.||= .|+.++|-|+||=. -+.|.||..
T Consensus 20 i~~~~P~~g~--~~~~~~i~G~nfg~~~~~~~v~~~~~ 55 (430)
T 3tc9_A 20 ISEFSPKEGG--LGTRMLLYGENFGSDISKIKVTIGGQ 55 (430)
T ss_dssp EEEEECSEEC--TTCEEEEEEECCCSCGGGEEEEETTE
T ss_pred EEEEcCCCCC--CCCEEEEEEEcCCCCccceEEEECCE
Confidence 3333388886 89999999999932 235776653
No 32
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=24.32 E-value=68 Score=16.68 Aligned_cols=18 Identities=22% Similarity=0.499 Sum_probs=13.4
Q ss_pred EEEecCCCCCCceecCeEE
Q psy14529 19 LAVSDNIPSEGWTSGGATV 37 (59)
Q Consensus 19 LavSDnmpseGW~tgG~tV 37 (59)
..+.++ |.+-|-.||.++
T Consensus 43 V~i~e~-~~~~w~~gG~~~ 60 (67)
T 3m21_A 43 VIIDEV-DSNNYGLGGESV 60 (67)
T ss_dssp EEEEEC-CTTTEEETTEEH
T ss_pred EEEEEe-CHHHeEECCEEH
Confidence 444554 999999999764
No 33
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=21.18 E-value=45 Score=16.73 Aligned_cols=17 Identities=18% Similarity=0.587 Sum_probs=12.4
Q ss_pred EEEecCCCCCCceecCeE
Q psy14529 19 LAVSDNIPSEGWTSGGAT 36 (59)
Q Consensus 19 LavSDnmpseGW~tgG~t 36 (59)
+.+.|+ |.+-|..||.+
T Consensus 41 V~i~e~-~~~~w~~gG~~ 57 (64)
T 3abf_A 41 VILYEV-RRDQWAAGGVL 57 (64)
T ss_dssp EEEEEE-CGGGEEETTEE
T ss_pred EEEEEc-CHHHeeECCEE
Confidence 345555 88899999876
No 34
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=21.11 E-value=40 Score=18.39 Aligned_cols=17 Identities=35% Similarity=0.653 Sum_probs=14.1
Q ss_pred EEEEecCccccceeeEE
Q psy14529 36 TVIIVGDNFFDGLQVVF 52 (59)
Q Consensus 36 tViiiG~nFf~GLqvvf 52 (59)
...|+||.|....-++|
T Consensus 58 ~~~ILGd~Fl~~~y~vf 74 (87)
T 1b5f_B 58 PLWILGDVFMRPYHTVF 74 (87)
T ss_dssp BEEEECHHHHTTEEEEE
T ss_pred CeEEechHHhccEEEEE
Confidence 35679999999888887
Done!