RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14529
(59 letters)
>gnl|CDD|238580 cd01175, IPT_COE, IPT domain of the COE family (Col/Olf-1/EBF) of
non-basic, helix-loop-helix (HLH)-containing
transcription factors. COE family proteins are all
transcription factors and play an important role in
variety of developmental processes. Mouse EBF is
involved in the regulation of the early stages of
B-cell differentiation, Drosophila collier is a
regulator of the head patterning, and a related protein
in Xenopus is involved in primary neurogenesis. All COE
family members have a well conserved DNA binding domain
that contains an atypical Zn finger motif. The function
of the IPT domain is unknown.
Length = 85
Score = 70.0 bits (171), Expect = 5e-18
Identities = 32/34 (94%), Positives = 34/34 (100%)
Query: 26 PSEGWTSGGATVIIVGDNFFDGLQVVFGTMLVWS 59
PSEGWT+GGATVII+GDNFFDGLQVVFGTMLVWS
Sbjct: 8 PSEGWTTGGATVIIIGDNFFDGLQVVFGTMLVWS 41
>gnl|CDD|212156 cd11606, COE_DBD, Colier/Olf/Early B-cell factor (EBF) DNA Binding
Domain. COE_DBD is the amino-terminal DNA binding
domain of the COE protein family. The COE transcription
factor is a regulator of development in several organs
and tissues that contain the DBD domain as well as
IPT/TIG (immunoglobulin-like, Plexins, transcription
factors/transcription factor immunoglobulin) and basic
helix-loop-helix (bHLH) domains. COE has four members in
mammals (COE1-4) with high sequence similarity at the
amino-terminal region. COE_DBD requires a zinc ion to
bind DNA and contains a zinc finger motif
(H-X(3)-C-X(2)-C-X(5)-C) termed the zinc knuckle. COE is
homo- or heterodimerized through the bHLH domain to bind
DNA. COE1-4 each has a variant due to alternative
splicing. However, this alternative splicing does not
occur at the DBD domain.
Length = 212
Score = 54.0 bits (130), Expect = 7e-11
Identities = 19/25 (76%), Positives = 22/25 (88%)
Query: 1 MRRFQVVISTQVGVDGPLLAVSDNI 25
MRRFQVV+ST V VDG +LAVSDN+
Sbjct: 173 MRRFQVVLSTTVNVDGHVLAVSDNM 197
>gnl|CDD|238050 cd00102, IPT, Immunoglobulin-like fold, Plexins, Transcription
factors (IPT). IPTs are also known as Transcription
factor ImmunoGlobin (TIG) domains. They are present in
intracellular transcription factors, cell surface
receptors (such as plexins and scatter factor
receptors), as well as, cyclodextrin
glycosyltransferase and similar enzymes. Although they
are involved in DNA binding in transcription factors,
their function in other proteins is unknown. In these
transcription factors, IPTs form homo- or heterodimers
with the exception of the nuclear factor of activated
Tcells (NFAT) transcription factors which are mainly
monomers.
Length = 89
Score = 30.5 bits (69), Expect = 0.013
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 25 IPSEGWTSGGATVIIVGDNFFDG--LQVVFGTMLVWS 59
PS G SGG V I G NF G L+V FG + S
Sbjct: 7 SPSSGPVSGGTEVTITGSNFGSGSNLRVTFGGGVPCS 43
>gnl|CDD|214657 smart00429, IPT, ig-like, plexins, transcription factors.
Length = 90
Score = 27.4 bits (61), Expect = 0.21
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 26 PSEGWTSGGATVIIVGDNFFDGLQVVFGTMLVWS 59
P+ G SGG + + G N VVF + V
Sbjct: 9 PTSGPVSGGTEITLCGKNLKSI-SVVFVEVGVGE 41
>gnl|CDD|216730 pfam01833, TIG, IPT/TIG domain. This family consists of a domain
that has an immunoglobulin like fold. These domains are
found in cell surface receptors such as Met and Ron as
well as in intracellular transcription factors where it
is involved in DNA binding. CAUTION: This family does
not currently recognise a significant number of
members.
Length = 84
Score = 27.0 bits (60), Expect = 0.26
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 26 PSEGWTSGGATVIIVGDNF---FDGLQVVFGTMLV 57
P+ G SGG T+ I G NF + +V FG
Sbjct: 8 PATGPASGGTTITITGSNFGTDSEDTKVTFGGTEC 42
>gnl|CDD|238583 cd01178, IPT_NFAT, IPT domain of the NFAT family of transcription
factors. NFAT transcription complexes are a target of
calcineurin, a calcium dependent phosphatase, and
activate genes mainly involved in
cell-cell-interaction.
Length = 101
Score = 25.5 bits (56), Expect = 1.3
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 33 GGATVIIVGDNFFDGLQVVF 52
GG + + G NF +VVF
Sbjct: 16 GGEELFLTGKNFLKDSKVVF 35
>gnl|CDD|238337 cd00603, IPT_PCSR, IPT domain of Plexins and Cell Surface
Receptors (PCSR) and related proteins . This subgroup
contains IPT domains of plexins, receptors, like the
plasminogen-related growth factor receptors, the
hepatocyte growth factor-scatter factors, and the
macrophage-stimulating receptors and of fibrocystin.
Plexins are involved in the regulation of cell
proliferation and of cellular adhesion and repulsion
receptors. In general, there are three copies of the
IPT_PCSR domain present preceeded by SEMA (semaphorin)
and PSI (plexin, semaphorin, integrin) domains.
Length = 90
Score = 25.1 bits (55), Expect = 1.4
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 26 PSEGWTSGGATVIIVGDNF 44
PS G SGG + I G N
Sbjct: 8 PSSGPLSGGTRLTITGSNL 26
>gnl|CDD|181865 PRK09449, PRK09449, dUMP phosphatase; Provisional.
Length = 224
Score = 24.5 bits (54), Expect = 4.0
Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 14/45 (31%)
Query: 6 VVISTQVGVDGP-------LLAVSDNIPSEGWTSGGATVIIVGDN 43
+VIS QVGV P L N V++VGDN
Sbjct: 140 LVISEQVGVAKPDVAIFDYALEQMGNPDRS-------RVLMVGDN 177
>gnl|CDD|179314 PRK01641, leuD, isopropylmalate isomerase small subunit;
Provisional.
Length = 200
Score = 23.9 bits (53), Expect = 4.5
Identities = 6/11 (54%), Positives = 10/11 (90%)
Query: 34 GATVIIVGDNF 44
GA++++ GDNF
Sbjct: 67 GASILLAGDNF 77
>gnl|CDD|181457 PRK08526, PRK08526, threonine dehydratase; Provisional.
Length = 403
Score = 23.9 bits (52), Expect = 5.0
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 6/28 (21%)
Query: 17 PLLAVSDNIPSEGWTSGGATVIIVGDNF 44
PLL VS G + GA VI+ GDN+
Sbjct: 103 PLLKVS------GTKALGAEVILKGDNY 124
>gnl|CDD|178504 PLN02916, PLN02916, pectinesterase family protein.
Length = 502
Score = 24.2 bits (52), Expect = 5.8
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 13 GVDGPLLAVSDNIPSEGWTSGGATVIIVGDNFF 45
G+D ++ + N+P T AT + GD F+
Sbjct: 248 GMDKTIITNNRNVPDGSTTYSSATFGVSGDGFW 280
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.141 0.435
Gapped
Lambda K H
0.267 0.0676 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,067,546
Number of extensions: 217847
Number of successful extensions: 220
Number of sequences better than 10.0: 1
Number of HSP's gapped: 219
Number of HSP's successfully gapped: 12
Length of query: 59
Length of database: 10,937,602
Length adjustment: 31
Effective length of query: 28
Effective length of database: 9,562,628
Effective search space: 267753584
Effective search space used: 267753584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.3 bits)